Query psy17958
Match_columns 678
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 18:43:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k3j_A Mitochondrial intermemb 2.3 4.8E+02 0.016 23.5 0.6 17 20-36 46-62 (146)
2 1g4d_A Repressor protein C; pr 1.9 6.1E+02 0.021 19.5 0.6 12 6-18 3-14 (69)
3 4d8b_A Streptopain; papain fol 1.3 8.7E+02 0.03 22.6 0.5 13 11-23 176-188 (261)
4 3tr7_A UDG, uracil-DNA glycosy 1.2 1.1E+03 0.038 22.0 0.8 31 10-44 34-66 (232)
5 3s8k_A Latex serine proteinase 1.1 1.6E+03 0.054 19.7 1.7 12 12-23 53-64 (184)
6 3fyr_A Sporulation inhibitor S 1.1 1E+03 0.035 18.0 0.2 10 5-14 13-22 (48)
7 1r8o_A STI, kunitz trypsin inh 1.0 1.4E+03 0.046 18.4 0.8 14 12-25 50-63 (96)
8 2zxt_A Maltose-binding peripla 1.0 1.5E+03 0.052 20.6 1.1 16 23-38 388-403 (465)
9 3iir_A Trypsin inhibitor; beta 0.9 1.7E+03 0.06 19.4 1.3 15 11-25 50-64 (190)
10 1u9d_A Hypothetical protein VC 0.9 1.4E+03 0.047 19.3 0.5 20 3-30 56-75 (122)
No 1
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=2.27 E-value=4.8e+02 Score=23.52 Aligned_cols=17 Identities=35% Similarity=0.982 Sum_probs=14.1
Q ss_pred ccCCCCCcccCCCcccC
Q psy17958 20 VYSPPARLNWSTPCLTS 36 (678)
Q Consensus 20 vyspparlnwstpclts 36 (678)
.+-|-..+||.-|||..
T Consensus 46 ~~~p~GeINwdCPClgg 62 (146)
T 2k3j_A 46 LILPNGNINWNCPCLGG 62 (146)
T ss_dssp CBCTTSSBCTTSHHHHH
T ss_pred ccCCCCceeecCCcccc
Confidence 46678899999999965
No 2
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=1.87 E-value=6.1e+02 Score=19.53 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=8.6
Q ss_pred cchhhhhhhcCCC
Q psy17958 6 SYFKAKEIQAGMP 18 (678)
Q Consensus 6 syfkakeiqagmp 18 (678)
.+|-|+|| ||+|
T Consensus 3 ew~ta~EL-a~l~ 14 (69)
T 1g4d_A 3 IWCSPQEI-MAAD 14 (69)
T ss_dssp CCBCHHHH-HTST
T ss_pred ccCcHHHH-hcCC
Confidence 57889998 4554
No 3
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=1.33 E-value=8.7e+02 Score=22.56 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=10.9
Q ss_pred hhhhcCCCcccCC
Q psy17958 11 KEIQAGMPTVYSP 23 (678)
Q Consensus 11 keiqagmptvysp 23 (678)
+||.+|.|++|+-
T Consensus 176 ~eL~~grPV~~~G 188 (261)
T 4d8b_A 176 KELSQNQPVYYQG 188 (261)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEEe
Confidence 6899999999874
No 4
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=1.16 E-value=1.1e+03 Score=21.96 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=18.2
Q ss_pred hhhhhcCCCcccCCCCC--cccCCCcccCCcccceEe
Q psy17958 10 AKEIQAGMPTVYSPPAR--LNWSTPCLTSPRQTKLVY 44 (678)
Q Consensus 10 akeiqagmptvysppar--lnwstpcltsprqtklvy 44 (678)
++|.++|. +|| |+.. +||.. ++.+.+.|+|.
T Consensus 34 ~~e~~~g~-~i~-P~~~~iF~af~--~tp~~~VKVVI 66 (232)
T 3tr7_A 34 KKERKAGK-IIY-PPQKDIFNALK--LTPYEAIKVVI 66 (232)
T ss_dssp HHHHHTTC-CEE-SCGGGTTHHHH--HSCGGGCCEEE
T ss_pred HHHHHcCC-EEe-CCHHHHHHHHh--cCCccceEEEE
Confidence 35666664 466 4443 45553 45677777775
No 5
>3s8k_A Latex serine proteinase inhibitor; kunitz-STI fold, protease inhibitor, hydrolase inhibitor; HET: NAG FUC; 1.70A {Carica papaya} PDB: 3s8j_A*
Probab=1.13 E-value=1.6e+03 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=10.7
Q ss_pred hhhcCCCcccCC
Q psy17958 12 EIQAGMPTVYSP 23 (678)
Q Consensus 12 eiqagmptvysp 23 (678)
|+..|+|+.++|
T Consensus 53 ~~~~GlPV~Fs~ 64 (184)
T 3s8k_A 53 PFDNGEPIIFSA 64 (184)
T ss_dssp TTSCBCCEEEEE
T ss_pred CCCCCceEEEEE
Confidence 778899999998
No 6
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=1.08 E-value=1e+03 Score=17.96 Aligned_cols=10 Identities=60% Similarity=0.989 Sum_probs=6.4
Q ss_pred ccchhhhhhh
Q psy17958 5 SSYFKAKEIQ 14 (678)
Q Consensus 5 ssyfkakeiq 14 (678)
-+|++|+|.+
T Consensus 13 esY~~A~el~ 22 (48)
T 3fyr_A 13 ESYFKATEMN 22 (48)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 3577777654
No 7
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=1.01 E-value=1.4e+03 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=11.7
Q ss_pred hhhcCCCcccCCCC
Q psy17958 12 EIQAGMPTVYSPPA 25 (678)
Q Consensus 12 eiqagmptvysppa 25 (678)
|.+.|.|+.++++.
T Consensus 50 ~~~~GlPV~Fs~~~ 63 (96)
T 1r8o_A 50 ELSNGLPVRFKASP 63 (96)
T ss_dssp TTCCCCCEEEECSS
T ss_pred CCCCCceEEEEecC
Confidence 57789999999875
No 8
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=0.96 E-value=1.5e+03 Score=20.62 Aligned_cols=16 Identities=31% Similarity=0.843 Sum_probs=12.8
Q ss_pred CCCCcccCCCcccCCc
Q psy17958 23 PPARLNWSTPCLTSPR 38 (678)
Q Consensus 23 pparlnwstpcltspr 38 (678)
|-..+||.-||+...+
T Consensus 388 ~~~~~~~~~~~~~~~~ 403 (465)
T 2zxt_A 388 DTGEINWDCPCLGGMA 403 (465)
T ss_dssp TTTEECTTCGGGTTTT
T ss_pred CCCeeeecCCccccCC
Confidence 4568999999998654
No 9
>3iir_A Trypsin inhibitor; beta-trefoil fold, hydrolase inhib; 2.90A {Murraya koenigii} SCOP: b.42.4.0
Probab=0.94 E-value=1.7e+03 Score=19.44 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=11.9
Q ss_pred hhhhcCCCcccCCCC
Q psy17958 11 KEIQAGMPTVYSPPA 25 (678)
Q Consensus 11 keiqagmptvysppa 25 (678)
.|+..|+|+.++|.+
T Consensus 50 ~~~~~GlPV~Fsp~~ 64 (190)
T 3iir_A 50 PDLHKGTRLRFAAYN 64 (190)
T ss_dssp CTTCCBSCEEEEETT
T ss_pred CCCCCCeeEEEEecC
Confidence 467789999999765
No 10
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=0.91 E-value=1.4e+03 Score=19.28 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=13.1
Q ss_pred ccccchhhhhhhcCCCcccCCCCCcccC
Q psy17958 3 VYSSYFKAKEIQAGMPTVYSPPARLNWS 30 (678)
Q Consensus 3 vyssyfkakeiqagmptvyspparlnws 30 (678)
+.|.||.+. .+||.| .+.|-
T Consensus 56 i~s~~i~~G---~~MP~V-----eV~~f 75 (122)
T 1u9d_A 56 INTQYFAEG---GVYPMV-----EVLWF 75 (122)
T ss_dssp CCCCCCCTT---CCCCEE-----EEEES
T ss_pred eeeEEEecC---CCCCEE-----EEEEc
Confidence 445666655 778876 56676
Done!