Query psy17958
Match_columns 678
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 18:43:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv0a_ a.2.12.1 (A:) Sporulat 15.5 14 0.001 26.6 -0.2 14 3-16 9-22 (46)
2 d1tnsa_ a.6.1.7 (A:) mu transp 3.5 1.4E+02 0.01 22.0 0.7 14 6-20 3-16 (76)
3 d1qpma_ a.6.1.7 (A:) mu transp 2.6 2.2E+02 0.016 20.6 0.9 14 5-19 2-15 (69)
4 d2cbia3 d.92.2.3 (A:41-178) Hy 1.5 3.3E+02 0.024 19.1 0.3 31 17-47 3-33 (138)
5 d1lnga_ d.201.1.1 (A:) SRP19 { 1.5 3.8E+02 0.028 19.6 0.6 9 2-10 2-10 (87)
6 d1ulza3 d.142.1.2 (A:115-328) 1.5 4.4E+02 0.032 19.6 1.0 12 9-20 3-16 (214)
7 d1wxxa1 b.122.1.9 (A:1-64) Hyp 1.5 4.8E+02 0.035 18.0 1.1 22 3-24 3-24 (64)
8 d1g8kb_ b.33.1.1 (B:) Arsenite 1.3 9.7E+02 0.071 17.8 2.7 18 8-25 12-29 (133)
9 d2as0a1 b.122.1.9 (A:1-72) Hyp 1.2 5.5E+02 0.04 17.1 0.8 16 9-24 10-25 (72)
10 d2h9fa2 d.21.1.4 (A:187-395) H 1.2 3.8E+02 0.028 22.3 -0.2 21 10-30 25-45 (209)
No 1
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=15.48 E-value=14 Score=26.60 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=10.7
Q ss_pred ccccchhhhhhhcC
Q psy17958 3 VYSSYFKAKEIQAG 16 (678)
Q Consensus 3 vyssyfkakeiqag 16 (678)
..-|||||||++-+
T Consensus 9 LiEsYykA~El~L~ 22 (46)
T d1pv0a_ 9 LIESYFKATEMNLN 22 (46)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 45689999998743
No 2
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=3.50 E-value=1.4e+02 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=9.9
Q ss_pred cchhhhhhhcCCCcc
Q psy17958 6 SYFKAKEIQAGMPTV 20 (678)
Q Consensus 6 syfkakeiqagmptv 20 (678)
.+|-|+|| ||+|-+
T Consensus 3 ~W~tA~EL-agLpgl 16 (76)
T d1tnsa_ 3 LWVSPKEL-ANLPGL 16 (76)
T ss_dssp CEECHHHH-TTCSSS
T ss_pred ccccHHHH-hcCCCC
Confidence 57889999 555543
No 3
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=2.59 E-value=2.2e+02 Score=20.62 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=9.6
Q ss_pred ccchhhhhhhcCCCc
Q psy17958 5 SSYFKAKEIQAGMPT 19 (678)
Q Consensus 5 ssyfkakeiqagmpt 19 (678)
+-+|-|+||. |+|-
T Consensus 2 ~~W~tA~ELa-gLpg 15 (69)
T d1qpma_ 2 SIWCSPQEIM-AADG 15 (69)
T ss_dssp CCCBCHHHHH-TSTT
T ss_pred CeeecHHHHh-cCCC
Confidence 3589999994 4443
No 4
>d2cbia3 d.92.2.3 (A:41-178) Hyaluronidase N-terminal domain {Clostridium perfringens [TaxId: 1502]}
Probab=1.52 E-value=3.3e+02 Score=19.06 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=21.5
Q ss_pred CCcccCCCCCcccCCCcccCCcccceEeecc
Q psy17958 17 MPTVYSPPARLNWSTPCLTSPRQTKLVYSTP 47 (678)
Q Consensus 17 mptvyspparlnwstpcltsprqtklvystp 47 (678)
||.|+--|..+.|..--+.-+...+++++..
T Consensus 3 ~P~iiP~P~~i~~~~g~~~l~~~~~i~~~~~ 33 (138)
T d2cbia3 3 VPNLNPTPENLEVVGDGFKITSSINLVGEEE 33 (138)
T ss_dssp CCCCSSCCSEEEEEEEEEECCSEEEEESTTT
T ss_pred CCcEECcCeEEEECCCEEEECCCEEEEECCc
Confidence 7888888888887766666666666665443
No 5
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.49 E-value=3.8e+02 Score=19.60 Aligned_cols=9 Identities=22% Similarity=0.796 Sum_probs=4.4
Q ss_pred cccccchhh
Q psy17958 2 LVYSSYFKA 10 (678)
Q Consensus 2 lvyssyfka 10 (678)
++|-.||.+
T Consensus 2 vIyP~Y~Ds 10 (87)
T d1lnga_ 2 IIWPSYIDK 10 (87)
T ss_dssp EECGGGTBT
T ss_pred EEcchhhcC
Confidence 445555543
No 6
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=1.48 E-value=4.4e+02 Score=19.58 Aligned_cols=12 Identities=50% Similarity=1.021 Sum_probs=7.5
Q ss_pred hhhhh--hcCCCcc
Q psy17958 9 KAKEI--QAGMPTV 20 (678)
Q Consensus 9 kakei--qagmptv 20 (678)
++||+ +||+|+|
T Consensus 3 ~~k~~~~~aGvP~~ 16 (214)
T d1ulza3 3 RSKEVMKKAGVPVV 16 (214)
T ss_dssp HHHHHHHHTTCCBC
T ss_pred HHHHHHHHcCCCcC
Confidence 34554 6788875
No 7
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=1.47 E-value=4.8e+02 Score=18.02 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=16.0
Q ss_pred ccccchhhhhhhcCCCcccCCC
Q psy17958 3 VYSSYFKAKEIQAGMPTVYSPP 24 (678)
Q Consensus 3 vyssyfkakeiqagmptvyspp 24 (678)
|+-.=-+++.|++|-|-||+-.
T Consensus 3 v~lk~~~~~rl~~gHPWVf~~~ 24 (64)
T d1wxxa1 3 IQVNAKGAARLLSRHLWVFRRD 24 (64)
T ss_dssp EEECHHHHHHHHTTCCEECGGG
T ss_pred EEEccchhhHhhcCCccchhhh
Confidence 3444446788999999999863
No 8
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]}
Probab=1.28 E-value=9.7e+02 Score=17.82 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.0
Q ss_pred hhhhhhhcCCCcccCCCC
Q psy17958 8 FKAKEIQAGMPTVYSPPA 25 (678)
Q Consensus 8 fkakeiqagmptvysppa 25 (678)
-++++|.+|-|.++.-|.
T Consensus 12 ~~~~~l~~~~p~~f~yp~ 29 (133)
T d1g8kb_ 12 SVAKNLAANEPVSFTYPD 29 (133)
T ss_dssp EEGGGCCBTCCEEEECSS
T ss_pred EEHHHCCCCCCEEEeccC
Confidence 478899999998877553
No 9
>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=1.18 E-value=5.5e+02 Score=17.07 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=11.4
Q ss_pred hhhhhhcCCCcccCCC
Q psy17958 9 KAKEIQAGMPTVYSPP 24 (678)
Q Consensus 9 kakeiqagmptvyspp 24 (678)
.++.|+.|.|-||+.-
T Consensus 10 a~~~l~~g~pwi~~~~ 25 (72)
T d2as0a1 10 AARAIGKGAMIVFKKG 25 (72)
T ss_dssp HHHHHHTTCCEEEGGG
T ss_pred HHHHHHcCCCeECHhh
Confidence 4667788888887643
No 10
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.16 E-value=3.8e+02 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=14.0
Q ss_pred hhhhhcCCCcccCCCCCcccC
Q psy17958 10 AKEIQAGMPTVYSPPARLNWS 30 (678)
Q Consensus 10 akeiqagmptvyspparlnws 30 (678)
+--|.+|||.||-.-+.|.+.
T Consensus 25 vS~IDaa~P~Vfv~A~dlG~t 45 (209)
T d2h9fa2 25 ATMINAGIPTVFVNAEEIGYR 45 (209)
T ss_dssp EEEEESSSEEEEEETTTTTCC
T ss_pred EEEEeCCCcEEEEEHHHcCCC
Confidence 334667888887777777653
Done!