BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17959
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 49/216 (22%)
Query: 16 DRGSPF---KEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIMAHSFR 72
D GS F I++++ GYG++A +T G++ IFYA+VGIPL + L+ +GD + S R
Sbjct: 115 DLGSAFFFSGTIITTI-GYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173
Query: 73 FLYWKDFDFFTEYYDTKGVGNAEQI---KPVPIWLC------VFLVIS---YIIGGAFLF 120
G+G+ E I VP L +FL+I +++ F+F
Sbjct: 174 ----------------HGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVF 217
Query: 121 SHWEPWGFPDSAYFCFITLTTIGFGDFV----PAQKSTDVQTAEETAELRIALCSLYLLF 176
+ E W ++ YF +TLTT+GFGD+V P Q S Q L ++L
Sbjct: 218 CYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQP----------LVWFWILL 267
Query: 177 GIALLAMSFNLVQE--EVISNVKAIAKHLGIIKSSN 210
G+A A + V+S + A+ G+ SN
Sbjct: 268 GLAYFASVLTTIGNWLRVVSR-RTRAEMGGLTAQSN 302
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 331 AFLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKS 390
AF FS I T GYGNVA T G++ I YA+ G+PLF + L+ +GD L S
Sbjct: 119 AFFFSGTII-------TTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171
Query: 391 FK 392
+
Sbjct: 172 LR 173
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 16/133 (12%)
Query: 505 PQMVTVPITLCLMIMVG---YIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGD 561
P++V V ++ L +++G ++ +F EDW+ L+ YF ++L+T+GFGD V G
Sbjct: 190 PELVRV-LSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGA 248
Query: 562 KITGKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVTQRKSKX 621
+ + Q L +++LG+A A + + +R S T+ +
Sbjct: 249 D--PRQDSPAYQP------LVWFWILLGLAYFASVLT----TIGNWLRVVSRRTRAEMGG 296
Query: 622 XXXXXNSLPNIYS 634
NSL ++
Sbjct: 297 LTAQSNSLEVLFQ 309
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 694 LENWTFLDGTFFCFTSLGTIGFGELIPG 721
+E+W+ L+ +F +L T+GFG+ + G
Sbjct: 220 MEDWSKLEAIYFVIVTLTTVGFGDYVAG 247
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNI-GDIMAHSFRFLYWKDF 79
F + S GYGH P + GK I Y+++GIP LL L+ + I H R
Sbjct: 100 FASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRP----- 154
Query: 80 DFFTEYYDTKGVGNAEQIKPVPIWLCVFLVIS--YIIGGAFLFSHWEPWGFPDSAYFCFI 137
Y+ + + + + V L F+ +S + I A + W F +S YFCFI
Sbjct: 155 ---VLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFI 211
Query: 138 TLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFG-IALLAM 183
+L+TIG GD+VP + Q E ++ I + YLL G IA+L +
Sbjct: 212 SLSTIGLGDYVPGEGYN--QKFRELYKIGI---TCYLLLGLIAMLVV 253
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 527 AVLFSKWED-WNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
A +FS ED WN L+ YFCFISLSTIG GD VPG+ K EL I Y
Sbjct: 190 AAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFR-------ELYKIGITCY 242
Query: 586 LMLGMALIAMCFNLMQEEVVHKMR 609
L+LG LIAM L +H+++
Sbjct: 243 LLLG--LIAMLVVLETFCELHELK 264
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 695 ENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLR 729
++W FL+ +FCF SL TIG G+ +PGE Y++ R
Sbjct: 198 DDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFR 232
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNI 383
+ GYG+ P++ GK I Y++ G+P LL+L+ +
Sbjct: 106 STTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAV 142
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 103 WLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEET 162
+L +F+++ II +F E +PD+ ++ +T TT+G+GD VP +
Sbjct: 19 FLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRI------ 72
Query: 163 AELRIALCSLYLLFGIALLAM 183
L S+ +LFGIA + M
Sbjct: 73 ------LASIMMLFGIAFIGM 87
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 514 LCLMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQ 573
L + +++ I ++F + E N D ++ ++ +T+G+GDIVP I G+
Sbjct: 20 LMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPI-GR------- 71
Query: 574 TLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVTQRKSK 620
IL ++ ++ G+A I M + + K T S TQR +K
Sbjct: 72 ------ILASIMMLFGIAFIGMITSTITNFFRCKKPTNSS-TQRANK 111
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 96 QIKPVPIWLCVFLVISYIIGG--AFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPA 150
++ VP + LV++ II G F F E W S Y+ F+T+ T+G+GD+ P+
Sbjct: 14 RVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPS 68
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 502 KNDPQMVTVPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
K+ P+++ VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 10 KHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 96 QIKPVPIWLCVFLVISYIIGG--AFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPA 150
++ VP + LV++ II G F F E W S Y+ F+T+ T+G+GD+ P+
Sbjct: 14 RVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSPS 68
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 502 KNDPQMVTVPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
K+ P+++ VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 10 KHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+GFGDF P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D YF ++L+T+GFGD P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + G+G +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 505 PQMVTVPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
P+++ VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 3 PRVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 57
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 96 QIKPVPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
++ VP + LV++ II G F E + S Y+ F+T+ T+G+GD+ P
Sbjct: 4 RVLKVPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 57
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G+GDF P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D YF ++L+T+G+GD P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + GYG +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G GDF P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D YF ++L+T+G GD P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLML 57
F + + G G +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVF 75
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 100 VPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
VP + LV++ II G F E + S Y+ F+T+ T+G+GD+ P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 50
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 510 VPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 50
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 34.7 bits (78), Expect = 0.23, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 100 VPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
VP + LV++ II G F E + S Y+ F+T+ T+G+GD+ P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 50
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 510 VPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 50
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 100 VPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
VP + LV++ II G F E + S Y+ F+T+ T+G+GD+ P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 50
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 510 VPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
VP T + L+++ IYG A F + E W + Y+ F++++T+G+GD P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIATVGYGDYSP 50
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAK 389
V+ T GYG+V P T +GK+ IA + G+ L + + ++ K
Sbjct: 186 VVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 232
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 518 IMVGYIYGG-AVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIG 571
+M+ +YG A+ ++ D N + D ++ ++ +T+G+GD+VP I GK I
Sbjct: 152 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPI-GKVIGIA 210
Query: 572 VQTLELSFILCAMYLMLG 589
V +S A+ L++G
Sbjct: 211 VMLTGIS----ALTLLIG 224
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 24 ILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDI 66
+ ++ GYG + P T +GKV I + GI + L + + ++
Sbjct: 187 VTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 130 DSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFG 177
D+ ++ +T TT+G+GD VPA T + A + + +L LL G
Sbjct: 180 DALWWAVVTATTVGYGDVVPA---TPIGKVIGIAVMLTGISALTLLIG 224
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAK 389
V+ T GYG+V P T +GK+ IA + G+ L + + ++ K
Sbjct: 174 VVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 518 IMVGYIYGG-AVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIG 571
+M+ +YG A+ ++ D N + D ++ ++ +T+G+GD+VP I GK I
Sbjct: 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPI-GKVIGIA 198
Query: 572 VQTLELSFILCAMYLMLG 589
V +S A+ L++G
Sbjct: 199 VMLTGIS----ALTLLIG 212
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 24 ILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDI 66
+ ++ GYG + P T +GKV I + GI + L + + ++
Sbjct: 175 VTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 130 DSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFG 177
D+ ++ +T TT+G+GD VPA T + A + + +L LL G
Sbjct: 168 DALWWAVVTATTVGYGDVVPA---TPIGKVIGIAVMLTGISALTLLIG 212
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ +F +TLTT+G+GDF P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + GYG +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D +F ++L+T+G+GD P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
L I +I G +S E D+ YF +TLTT+G+G+F P
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSP 54
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + GYG +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLV 74
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D YF ++L+T+G+G+ P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G+G+F P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + GYG+ +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLV 74
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D YF ++L+T+G+G+ P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPL 375
V+ T GYGN +P T GKI TI Y G+ L
Sbjct: 41 VVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 100 VPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
VP + LV++ II G F E + S Y+ F+T+ +G+GD+ P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDYSP 50
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 510 VPIT-LCLMIMVGYIYGGAVL-FSKWEDWNILDGSYFCFISLSTIGFGDIVP 559
VP T + L+++ IYG A F + E W + Y+ F++++ +G+GD P
Sbjct: 1 VPATRILLLVLAVIIYGTAGFHFIEGESWTV--SLYWTFVTIAAVGYGDYSP 50
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ +F +TLTT+G+GDF P + T
Sbjct: 13 LTILTLISGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTI-------- 64
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 65 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 94
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + GYG +P+T GK+ TI Y +GI L+
Sbjct: 39 FSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLV 74
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E +D +F ++L+T+G+GD P D G I +Y
Sbjct: 21 GTIFYSTVEGLRPIDALWFSVVTLTTVGYGDFSP-------QTDFGK-------IFTILY 66
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 67 IFIGIGLV 74
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 23/88 (26%)
Query: 514 LCLMIMVGYI-YGGAVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVP---GDKIT 564
L + +G I + AV F++ ++ + I D ++ +S++T+G+GD+VP G KI
Sbjct: 346 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 405
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMAL 592
G LCA+ +L +AL
Sbjct: 406 GS--------------LCAIAGVLTIAL 419
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 23/88 (26%)
Query: 514 LCLMIMVGYI-YGGAVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVP---GDKIT 564
L + +G I + AV F++ ++ + I D ++ +S++T+G+GD+VP G KI
Sbjct: 346 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 405
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMAL 592
G LCA+ +L +AL
Sbjct: 406 GS--------------LCAIAGVLTIAL 419
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 129 PDSAYFCFITLTTIGFGDFVP 149
PD+ ++ +++TT+G+GD VP
Sbjct: 377 PDAFWWAVVSMTTVGYGDMVP 397
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 23/88 (26%)
Query: 514 LCLMIMVGYI-YGGAVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVP---GDKIT 564
L + +G I + AV F++ ++ + I D ++ +S++T+G+GD+VP G KI
Sbjct: 331 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 390
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMAL 592
G LCA+ +L +AL
Sbjct: 391 GS--------------LCAIAGVLTIAL 404
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFKWIY------- 395
V+ T GYG++ P T GKI AIAG +L ++ ++ +F + Y
Sbjct: 369 VVSMTTVGYGDMVPTTIGGKIVGSLCAIAG----VLTIALPVPVIVSNFNYFYHRETEGE 424
Query: 396 --AKCCLCRGCPTRPR--DLQKTIQDTT---GAYNRRRSSAMNHNRRWNARN 440
A+ CP P DL+K+ +T Y + N N + N
Sbjct: 425 EQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREEN 476
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 23/88 (26%)
Query: 514 LCLMIMVGYI-YGGAVLFSKWEDWN-----ILDGSYFCFISLSTIGFGDIVP---GDKIT 564
L + +G I + AV F++ ++ + I D ++ +S++T+G+GD+VP G KI
Sbjct: 331 LIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIV 390
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMAL 592
G LCA+ +L +AL
Sbjct: 391 GS--------------LCAIAGVLTIAL 404
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFKWIY------- 395
V+ T GYG++ P T GKI AIAG +L ++ ++ +F + Y
Sbjct: 369 VVSMTTVGYGDMVPTTIGGKIVGSLCAIAG----VLTIALPVPVIVSNFNYFYHRETEGE 424
Query: 396 --AKCCLCRGCPTRPR--DLQKTIQDTT---GAYNRRRSSAMNHNRRWNARN 440
A+ CP P DL+K+ +T Y + N N + N
Sbjct: 425 EQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREEN 476
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 59 CLSNIGDIMAHSFRFLYWKDFDFFTEYYDTKGVGNAEQIKPVPIWLCVFLVISYIIGGAF 118
C G++ + + R+L D FT D K + + + L Y++G A
Sbjct: 15 CNVQHGNLGSETSRYLS----DLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAP 70
Query: 119 LFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGI 178
+ + + P GF + +F TL T+G+GD P T T E+ + + S+ L G
Sbjct: 71 IANQF-PAGFGGAFFFSVETLATVGYGDMHP---QTVYAHWIATLEIFVGMSSIALATGC 126
Query: 179 ALLAMS 184
A + MS
Sbjct: 127 AFIKMS 132
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
L I +I G +S E D+ YF +TLTT+G G+F P
Sbjct: 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSP 71
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
L I +I G +S E D+ YF +TLTT+G G+F P
Sbjct: 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFEP 71
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G G+F P + T
Sbjct: 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTI-------- 81
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 82 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G G+F P + T
Sbjct: 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTI-------- 81
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 82 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 111
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVP 149
L I +I G +S E D+ YF +TLTT+G G+F P
Sbjct: 30 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSP 71
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 102 IWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEE 161
+++ FL ++ G +S E D+ YF +TLTT+G G+F P V T
Sbjct: 30 LFVLTFLTLT---SGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTI-- 84
Query: 162 TAELRIALCSLYLLFGIALL-----AMSFNLVQEEVISNVK 197
LY+ GI L+ ++ N+ ++SN K
Sbjct: 85 ----------LYIFIGIGLVFGFIHKLAVNVQLPSILSNRK 115
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 526 GAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMY 585
G + +S E LD YF ++L+T+G G+ P D G + +Y
Sbjct: 41 GTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSP-------QTDFGK-------VFTILY 86
Query: 586 LMLGMALI 593
+ +G+ L+
Sbjct: 87 IFIGIGLV 94
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 21 FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLM 56
F + + G G+ +P+T GKV TI Y +GI L+
Sbjct: 59 FSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLV 94
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRI 167
L I +I G +S E D+ YF +TLTT+G G+F P + T
Sbjct: 12 LTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTI-------- 63
Query: 168 ALCSLYLLFGIALL-----AMSFNLVQEEVISNV 196
LY+ GI L+ ++ N+ ++SN+
Sbjct: 64 ----LYIFIGIGLVFGFIHKLAVNVQLPSILSNL 93
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
VI T GYG++ P+T G+ + +AG+ F L
Sbjct: 49 VITATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGL 84
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 52 TTVGYGDLCPVTLWGRLVAVVVMVAGITSFGL 83
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 53 TTVGYGDLCPVTLWGRLVAVVVMVAGITSFGL 84
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 80 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 111
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 53 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 84
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 81 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 112
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 74 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 105
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLL 378
T GYG++ P+T G++ + +AG+ F L
Sbjct: 74 TCVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,227,581
Number of Sequences: 62578
Number of extensions: 716435
Number of successful extensions: 1615
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1457
Number of HSP's gapped (non-prelim): 156
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)