Query psy17959
Match_columns 790
No_of_seqs 638 out of 3484
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:44:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 2.9E-37 6.2E-42 315.5 13.5 239 273-615 10-258 (350)
2 KOG4404|consensus 100.0 1.1E-34 2.3E-39 296.8 14.6 177 13-201 79-256 (350)
3 KOG1418|consensus 99.9 1.8E-27 3.8E-32 269.3 11.3 257 267-606 14-305 (433)
4 KOG1418|consensus 99.9 1.8E-27 3.8E-32 269.3 4.9 178 13-194 114-305 (433)
5 PF07885 Ion_trans_2: Ion chan 99.5 4.8E-14 1E-18 121.3 5.5 75 679-763 2-79 (79)
6 PF07885 Ion_trans_2: Ion chan 99.4 3.2E-13 6.9E-18 116.2 4.6 73 109-193 3-78 (79)
7 KOG3713|consensus 99.2 3.7E-11 8E-16 131.8 9.7 66 127-204 377-442 (477)
8 PRK10537 voltage-gated potassi 99.1 2.3E-10 5.1E-15 127.3 9.2 83 675-767 139-228 (393)
9 KOG3713|consensus 99.0 7.4E-10 1.6E-14 121.7 9.7 85 673-767 345-436 (477)
10 KOG1419|consensus 98.8 5.4E-09 1.2E-13 115.0 7.0 81 673-763 233-324 (654)
11 PRK10537 voltage-gated potassi 98.8 4.8E-08 1E-12 108.9 12.4 62 126-199 167-229 (393)
12 KOG1420|consensus 98.7 7.5E-09 1.6E-13 113.4 4.9 104 672-786 249-365 (1103)
13 KOG1545|consensus 98.7 1.8E-09 3.8E-14 113.0 -0.9 59 127-197 393-451 (507)
14 PLN03192 Voltage-dependent pot 98.7 4E-08 8.7E-13 120.8 8.3 53 701-763 253-305 (823)
15 KOG1545|consensus 98.6 2E-08 4.4E-13 105.1 3.6 56 697-762 392-447 (507)
16 KOG1419|consensus 98.6 5.4E-08 1.2E-12 107.3 6.1 58 127-196 269-326 (654)
17 PLN03192 Voltage-dependent pot 98.5 1.1E-07 2.4E-12 116.8 5.8 55 128-194 251-305 (823)
18 KOG4390|consensus 98.3 1.4E-07 3.1E-12 99.5 -0.7 80 677-766 328-414 (632)
19 KOG3193|consensus 98.2 3.3E-06 7.2E-11 92.6 7.0 84 670-763 184-272 (1087)
20 KOG1420|consensus 98.1 3.1E-06 6.7E-11 93.3 6.3 82 511-606 249-343 (1103)
21 KOG4390|consensus 98.0 7.5E-07 1.6E-11 94.2 -2.2 86 518-617 331-422 (632)
22 KOG0498|consensus 97.9 7.1E-06 1.5E-10 96.6 4.3 55 699-763 295-349 (727)
23 KOG3684|consensus 97.8 0.00013 2.7E-09 80.0 10.5 82 101-194 253-342 (489)
24 KOG3684|consensus 97.7 4.1E-05 9E-10 83.7 5.8 82 671-762 252-341 (489)
25 KOG0498|consensus 97.7 2.3E-05 4.9E-10 92.4 3.2 65 537-615 294-358 (727)
26 PF01007 IRK: Inward rectifier 97.4 0.00026 5.5E-09 77.4 6.0 81 673-763 38-141 (336)
27 KOG0501|consensus 97.1 0.00057 1.2E-08 76.3 5.1 56 698-763 423-478 (971)
28 KOG3193|consensus 96.6 0.0047 1E-07 68.6 6.9 30 536-565 216-245 (1087)
29 KOG0501|consensus 96.5 0.0031 6.8E-08 70.6 5.2 55 128-194 424-478 (971)
30 PF01007 IRK: Inward rectifier 96.0 0.0073 1.6E-07 66.2 4.5 58 127-194 84-141 (336)
31 TIGR00933 2a38 potassium uptak 91.8 0.083 1.8E-06 59.6 1.8 42 695-746 345-389 (390)
32 PF00520 Ion_trans: Ion transp 91.6 0.33 7.2E-06 48.1 5.8 56 697-757 144-200 (200)
33 KOG0500|consensus 91.5 0.54 1.2E-05 52.8 7.6 65 701-776 186-250 (536)
34 KOG0500|consensus 89.8 0.71 1.5E-05 51.9 6.6 52 130-194 186-237 (536)
35 KOG3827|consensus 89.5 1.3 2.9E-05 48.3 8.3 88 668-763 61-169 (400)
36 PF00520 Ion_trans: Ion transp 88.5 0.52 1.1E-05 46.7 4.2 55 127-188 145-200 (200)
37 PRK10750 potassium transporter 84.4 1.8 3.9E-05 50.2 6.3 65 671-746 395-465 (483)
38 KOG0499|consensus 82.3 2.3 4.9E-05 48.9 5.7 80 673-763 363-457 (815)
39 KOG3827|consensus 81.6 5.4 0.00012 43.8 8.0 58 127-194 112-169 (400)
40 TIGR00933 2a38 potassium uptak 77.9 8.3 0.00018 43.5 8.6 43 677-719 107-149 (390)
41 COG0168 TrkG Trk-type K+ trans 75.9 6 0.00013 46.1 6.8 56 670-725 396-453 (499)
42 PF02386 TrkH: Cation transpor 75.0 0.44 9.5E-06 53.0 -2.6 64 673-746 268-338 (354)
43 PF00060 Lig_chan: Ligand-gate 71.7 3.8 8.2E-05 38.9 3.3 57 697-764 43-99 (148)
44 PLN03223 Polycystin cation cha 58.5 9.2 0.0002 48.4 3.8 27 168-194 1398-1424(1634)
45 PRK10750 potassium transporter 57.5 35 0.00077 39.6 8.2 42 516-557 74-117 (483)
46 PF04931 DNA_pol_phi: DNA poly 51.6 5.3 0.00012 49.4 0.3 13 361-373 531-543 (784)
47 KOG0499|consensus 51.3 24 0.00051 41.1 5.2 56 126-194 402-457 (815)
48 KOG3676|consensus 51.1 70 0.0015 38.7 9.2 61 128-194 587-649 (782)
49 COG3114 CcmD Heme exporter pro 49.4 82 0.0018 25.7 6.5 24 583-606 18-41 (67)
50 COG0168 TrkG Trk-type K+ trans 46.4 1.2E+02 0.0026 35.5 10.2 29 693-722 193-221 (499)
51 PF00060 Lig_chan: Ligand-gate 41.6 28 0.00061 32.8 3.6 54 128-194 45-98 (148)
52 KOG0943|consensus 38.6 14 0.00031 45.8 1.1 23 35-57 1118-1140(3015)
53 PF01595 DUF21: Domain of unkn 38.4 1.4E+02 0.0031 29.2 8.2 62 699-765 86-147 (183)
54 TIGR00927 2A1904 K+-dependent 38.1 68 0.0015 39.8 6.6 30 46-75 457-487 (1096)
55 PF06524 NOA36: NOA36 protein; 37.6 17 0.00037 37.7 1.4 6 360-365 139-144 (314)
56 TIGR00927 2A1904 K+-dependent 37.1 16 0.00035 44.9 1.3 6 129-134 562-567 (1096)
57 PRK05482 potassium-transportin 36.7 73 0.0016 37.5 6.4 40 697-746 450-491 (559)
58 KOG3676|consensus 36.4 49 0.0011 40.0 5.0 66 537-611 586-654 (782)
59 KOG1832|consensus 35.7 15 0.00033 44.4 0.8 11 348-358 1268-1278(1516)
60 COG5406 Nucleosome binding fac 34.7 16 0.00034 42.5 0.7 23 24-46 272-294 (1001)
61 KOG2302|consensus 32.0 4.4E+02 0.0095 33.2 11.6 172 44-263 1200-1421(1956)
62 PF02386 TrkH: Cation transpor 31.7 23 0.0005 39.3 1.4 43 106-148 272-315 (354)
63 KOG1307|consensus 29.3 72 0.0016 36.3 4.5 22 128-149 111-132 (588)
64 KOG4440|consensus 28.9 46 0.00099 38.9 3.0 56 697-762 612-667 (993)
65 KOG1189|consensus 27.8 27 0.00059 41.6 1.1 23 24-46 231-253 (960)
66 TIGR00934 2a38euk potassium up 26.6 72 0.0016 39.0 4.3 180 510-746 455-659 (800)
67 KOG0569|consensus 26.2 1.5E+02 0.0032 34.6 6.7 25 583-607 307-331 (485)
68 TIGR00870 trp transient-recept 26.1 3.5E+02 0.0076 33.3 10.4 47 140-193 569-616 (743)
69 KOG1052|consensus 25.7 1.4E+02 0.0031 36.0 6.8 55 697-762 380-434 (656)
70 KOG1053|consensus 25.6 3E+02 0.0065 34.1 8.9 43 144-194 622-664 (1258)
71 PRK10263 DNA translocase FtsK; 25.1 4.6E+02 0.0099 34.3 10.9 16 44-59 72-87 (1355)
72 PRK10929 putative mechanosensi 24.9 1.6E+03 0.035 29.1 16.1 26 697-722 807-832 (1109)
73 PF04694 Corona_3: Coronavirus 24.4 50 0.0011 25.6 1.6 23 537-559 16-47 (60)
74 PLN03223 Polycystin cation cha 24.3 8.6E+02 0.019 32.0 12.8 30 735-764 1396-1425(1634)
75 KOG0262|consensus 24.2 1.2E+02 0.0025 38.7 5.4 8 716-723 1569-1576(1640)
76 KOG4289|consensus 23.7 1.6E+02 0.0034 38.2 6.4 30 582-611 2167-2196(2531)
77 KOG1189|consensus 22.5 38 0.00081 40.5 0.9 18 25-42 338-355 (960)
No 1
>KOG4404|consensus
Probab=100.00 E-value=2.9e-37 Score=315.55 Aligned_cols=239 Identities=27% Similarity=0.437 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhhccceeeeccccccccCCCCCccccchhhc-----hhchHHHHHHHHHhh-----hhhhccccceeee
Q psy17959 273 TLCLMIMVGYIYGGAVLFSKWEDWNILDGSRSSSRSRSRQQT-----ERSFTEKCKDYLRQF-----LAFLFSNIGIICL 342 (790)
Q Consensus 273 ~~~~~~~v~y~~~Ga~iF~~~E~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~-----~~~~f~~~~~~~~ 342 (790)
..+++..+.|+++||+||.++|.++|.++++.-..+..+... +.++.+..--+.+.- ..|.|..+++|..
T Consensus 10 l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~GaFYFa~ 89 (350)
T KOG4404|consen 10 LLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGAFYFAT 89 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcceEEEE
Confidence 344455677999999999999999888875433333332222 222222211111111 2399998887765
Q ss_pred EEEEEeecccccccccCCcceehhhHHHHhHHHHHHHHHHhhHHHHHHhHHHHhhccccccCCCCCccccchhccccccc
Q psy17959 343 VIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFKWIYAKCCLCRGCPTRPRDLQKTIQDTTGAY 422 (790)
Q Consensus 343 ~~~~ttiGyg~~~p~t~~g~~~~i~y~~~gipl~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~ 422 (790)
|++||||||+.+|.|.+||+|||+||++|||+.++.+..+|+.+...+..+.+++.++.+
T Consensus 90 -TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~------------------- 149 (350)
T KOG4404|consen 90 -TVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLG------------------- 149 (350)
T ss_pred -EEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------------
Confidence 777999999999999999999999999999999999999999999999887655332211
Q ss_pred cccccccccccccccccCCCCCccCCCCCCCccccCCchhhhhhhchhhhhhhhhhhhhhHhhhhcccccccccCCCCCC
Q psy17959 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502 (790)
Q Consensus 423 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ee~~~~~e~e~e~~~e~ee~~e~e~e~~ee~~~~~~~s~~~~ 502 (790)
.+.+.. +
T Consensus 150 ----------~r~~~~----S----------------------------------------------------------- 156 (350)
T KOG4404|consen 150 ----------RRRWDV----S----------------------------------------------------------- 156 (350)
T ss_pred ----------cccCCC----c-----------------------------------------------------------
Confidence 000100 0
Q ss_pred CCCceeeehHHHHHHHHHHhhhhhceeeecccccCcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHH
Q psy17959 503 NDPQMVTVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILC 582 (790)
Q Consensus 503 ~~~~~~~~~~~~~l~~~~~~i~~ga~~f~~~e~w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~ 582 (790)
..-.+.+.+...++.++.||++|+..|+|+|+||+||||||+|||||||+|+.++... -+..+.|..+.
T Consensus 157 -----~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~a------lq~qplYv~~s 225 (350)
T KOG4404|consen 157 -----VYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAA------LQSQPLYVFFS 225 (350)
T ss_pred -----HHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhh------hhCCCceehHh
Confidence 0013455556667789999999999999999999999999999999999999866322 24556788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy17959 583 AMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVT 615 (790)
Q Consensus 583 ~~~il~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (790)
++||++|+++++.++|++.-.+.....+..++.
T Consensus 226 f~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr~ 258 (350)
T KOG4404|consen 226 FVFILLGLCVIYALLNLLVLRFMTMNAEDERRD 258 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999998877666544444433
No 2
>KOG4404|consensus
Probab=100.00 E-value=1.1e-34 Score=296.76 Aligned_cols=177 Identities=28% Similarity=0.486 Sum_probs=137.5
Q ss_pred CCCCCCCCeEEEEEeccccccccccCCCcceehhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC
Q psy17959 13 GSHDRGSPFKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIMAHSFRFLYWKDFDFFTEYYDTKGVG 92 (790)
Q Consensus 13 ~~~~~~~~f~~t~~tTiGYG~i~P~T~~Gr~f~i~yaliGIPl~l~~l~~~g~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (790)
|-|.++.+|+.||+|||||||.+|.|++||+|||+||++|||+.++++..+|+.+...++++..+-..+. ..+.
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~----~~r~-- 152 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRL----GRRR-- 152 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccc--
Confidence 3444445599999999999999999999999999999999999999999999999888776554321111 0000
Q ss_pred Ccccccchhhh-HHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHH
Q psy17959 93 NAEQIKPVPIW-LCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCS 171 (790)
Q Consensus 93 ~~~~~~~~~~~-~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~ 171 (790)
.......++ +.+.+.++.++.||++|+..|+|+|+||+||||||+|||||||+|+.++... ..+.++++.+.+
T Consensus 153 --~~~S~~~l~~i~~~~~~~~i~~gaa~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~a----lq~qplYv~~sf 226 (350)
T KOG4404|consen 153 --WDVSVYNLVLILFTACILLICCGAAMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAA----LQSQPLYVFFSF 226 (350)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHhhHHHhhcccCcchhhhhheeeeeeeeccccchhhhcchhh----hhCCCceehHhH
Confidence 011112222 3344456778999999999999999999999999999999999999876422 224567899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 172 LYLLFGIALLAMSFNLVQEEVISNVKAIAK 201 (790)
Q Consensus 172 ~~~l~Gl~~~~~~i~~i~~~~~~~~~~~~~ 201 (790)
+||++|+++++.++|++.-.+........|
T Consensus 227 ~fIL~Gl~vi~a~~NllvLrf~t~~~~~~r 256 (350)
T KOG4404|consen 227 VFILLGLCVIYALLNLLVLRFMTMNAEDER 256 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999887765544433
No 3
>KOG1418|consensus
Probab=99.94 E-value=1.8e-27 Score=269.34 Aligned_cols=257 Identities=30% Similarity=0.434 Sum_probs=170.9
Q ss_pred eeEehhHHHHHHHHHHHhhccceeeeccccccccCC-CCCccccch-------hhchhchHHHHHHHHH-----------
Q psy17959 267 MVTVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGS-RSSSRSRSR-------QQTERSFTEKCKDYLR----------- 327 (790)
Q Consensus 267 ~~~l~~~~~~~~~v~y~~~Ga~iF~~~E~~~~~~~~-~~~~~~~~~-------~~~~~~~~e~~~~~~~----------- 327 (790)
+....|..+++.++.|.+.||.+|.++|.+++.+.. ........+ +..+............
T Consensus 14 ~~~~~~~~l~~~~~~y~~~ga~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (433)
T KOG1418|consen 14 RFGIRHVLLLLLVLLYLVLGAFIFQALERPKELELKQRELGLLLSNFILRIWRCIDELVLEEESRTKAHKQKASVLLALL 93 (433)
T ss_pred hhhcchhhHHHHHHHHHhhHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888999999999999999998877762 111111110 0001110111111000
Q ss_pred ----------------hhhhhhccccceeeeEEEEEeecccccccccCCcceehhhHHHHhHHHHHHHHHHhhHHHHHHh
Q psy17959 328 ----------------QFLAFLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSF 391 (790)
Q Consensus 328 ----------------~~~~~~f~~~~~~~~~~~~ttiGyg~~~p~t~~g~~~~i~y~~~gipl~~~~~~~~g~~l~~~~ 391 (790)
....|+|.++.+|+. |++|||||||++|.|.+||++||+||++|||+++++++++|+++.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~W~f~~al~fs~-tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 94 LGVANSALSLEGDESPDTQQWSFSSALLFSI-TVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred hhcchhhcccccccCCCCcceecchhHhhhh-heeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 011399999998887 667999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccCCCCCccccchhccccccccccccccccccccccccCCCCCccCCCCCCCccccCCchhhhhhhchhh
Q psy17959 392 KWIYAKCCLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEE 471 (790)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ee~~~~~e~e~ 471 (790)
++++.+.... +++.. ...... .+.++ +.. +
T Consensus 173 ~~~~~~~~~~----------------------~~~~~-----~~~~~~---~~~~~--------------~~~----~-- 202 (433)
T KOG1418|consen 173 RKLYRRRHVE----------------------LQRDR-----IRSNLR---RSIGL--------------RNR----S-- 202 (433)
T ss_pred HHHHHHhhhh----------------------hhhhh-----hhhhhh---ccccc--------------hhc----c--
Confidence 9888530000 00000 000000 00000 000 0
Q ss_pred hhhhhhhhhhhHhhhhcccccccccCCCCCCCCCceeeehHHHHHHHHHHhhhhhceeeecccccCcccceeEEEEeecc
Q psy17959 472 EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLST 551 (790)
Q Consensus 472 e~~~e~ee~~e~e~e~~ee~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~ga~~f~~~e~w~~~da~Yf~~itltT 551 (790)
.+.+.+ .... .+.++.+++.++++|+..|+.++..+|+|+|++|+||||+|+||
T Consensus 203 -------------~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltT 256 (433)
T KOG1418|consen 203 -------------VELGIE------------LLDE-LRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTT 256 (433)
T ss_pred -------------cccchh------------hccC-cceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeee
Confidence 000000 0001 45678888888999999999999999999999999999999999
Q ss_pred cccCCCccCCCcCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 552 IGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVH 606 (790)
Q Consensus 552 IGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~~ 606 (790)
|||||++|.+..++. .....+..+..+++++|++.++++.......+..
T Consensus 257 IG~GD~vp~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 305 (433)
T KOG1418|consen 257 IGFGDIVPRTLLGRF------RREELVDPLASVWILSGLALLALVLLGPDRRLEN 305 (433)
T ss_pred ecCCccccCCCccee------eccccccchhHHHHHhhhhHHHHHhhccccchhh
Confidence 999999999876541 0111123678889999999999998654444433
No 4
>KOG1418|consensus
Probab=99.93 E-value=1.8e-27 Score=269.35 Aligned_cols=178 Identities=36% Similarity=0.565 Sum_probs=132.3
Q ss_pred CCCCCCCCeEEEEEeccccccccccCCCcceehhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---hcccc-cccccc
Q psy17959 13 GSHDRGSPFKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIMAHSFRFLYWK---DFDFF-TEYYDT 88 (790)
Q Consensus 13 ~~~~~~~~f~~t~~tTiGYG~i~P~T~~Gr~f~i~yaliGIPl~l~~l~~~g~~l~~~~~~l~~~---~~~~~-~~~~~~ 88 (790)
|+|-.+++|++|++|||||||++|.|+.||+|||+||++||||++++++++|+++...++.++.+ ...+. .+....
T Consensus 114 W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (433)
T KOG1418|consen 114 WSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIRSNLR 193 (433)
T ss_pred eecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 45555555999999999999999999999999999999999999999999999999999887752 10000 000000
Q ss_pred c-------CCCCcccc---cchhhhHHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhh
Q psy17959 89 K-------GVGNAEQI---KPVPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQT 158 (790)
Q Consensus 89 ~-------~~~~~~~~---~~~~~~~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~ 158 (790)
. ........ .+.++...+..+++|+..|+.++..+|+|+|++|+||||+|+|||||||++|.+......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~- 272 (433)
T KOG1418|consen 194 RSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFR- 272 (433)
T ss_pred ccccchhcccccchhhccCcceehhhhheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceee-
Confidence 0 00001111 245566666677789999999999999999999999999999999999999998652100
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 159 AEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
.......+..+++++|+..++++.......+.+
T Consensus 273 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 305 (433)
T KOG1418|consen 273 ---REELVDPLASVWILSGLALLALVLLGPDRRLEN 305 (433)
T ss_pred ---ccccccchhHHHHHhhhhHHHHHhhccccchhh
Confidence 000123577889999999999998655554444
No 5
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.47 E-value=4.8e-14 Score=121.32 Aligned_cols=75 Identities=23% Similarity=0.704 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhhh---hcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy17959 679 IIISFILLGSLIFNK---LENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFN 755 (790)
Q Consensus 679 ~~~~~~~~g~~~~~~---~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 755 (790)
+++++++.|++.++. .|+|++.||+||+++|+|||||||+.|.++.|| +++++++++|+.++++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr----------~~~~~~~~~G~~~~~~~~~ 71 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAGR----------IFTIIYMLIGIFLFALFLS 71 (79)
T ss_dssp HHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccchH----------HHHHHHHHHHHHHHHHHHH
Confidence 345556677777777 678999999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHH
Q psy17959 756 LIQEEIIF 763 (790)
Q Consensus 756 ~i~~~~~~ 763 (790)
.+++.+.+
T Consensus 72 ~~~~~l~~ 79 (79)
T PF07885_consen 72 VLASVLTQ 79 (79)
T ss_dssp HHHHHHH-
T ss_pred HHHHHhcC
Confidence 99987653
No 6
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.38 E-value=3.2e-13 Score=116.19 Aligned_cols=73 Identities=33% Similarity=0.669 Sum_probs=60.3
Q ss_pred HHHHHHHHhHHhhc---ccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17959 109 VISYIIGGAFLFSH---WEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSF 185 (790)
Q Consensus 109 ~~~~i~~ga~~~~~---~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i 185 (790)
++.+++.+++.+.. .|+|+|.||+||+++|+|||||||++|.++. +|+++++++++|+.++++++
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~------------gr~~~~~~~~~G~~~~~~~~ 70 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPA------------GRIFTIIYMLIGIFLFALFL 70 (79)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccc------------hHHHHHHHHHHHHHHHHHHH
Confidence 34556667777776 6789999999999999999999999999654 89999999999999999999
Q ss_pred HHHHHHHH
Q psy17959 186 NLVQEEVI 193 (790)
Q Consensus 186 ~~i~~~~~ 193 (790)
+.+.+.+.
T Consensus 71 ~~~~~~l~ 78 (79)
T PF07885_consen 71 SVLASVLT 78 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99888765
No 7
>KOG3713|consensus
Probab=99.21 E-value=3.7e-11 Score=131.78 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=58.4
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLG 204 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~~~~~~~~~~ 204 (790)
|..-++|||+||+|||||||++|.|.. |++++..-++.|+.++|+.+.+|.+.+.+.+++.+.+-.
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm~P~T~~------------Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDMVPVTVL------------GKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred cccchhheeeEEEeeecccCccccccc------------hHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 478899999999999999999999876 899999999999999999999999999987765554433
No 8
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.09 E-value=2.3e-10 Score=127.27 Aligned_cols=83 Identities=20% Similarity=0.413 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHH
Q psy17959 675 VSFLIIISFILLGSLIFNKLEN------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMA 748 (790)
Q Consensus 675 ~~~~~~~~~~~~g~~~~~~~e~------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~ 748 (790)
..+..+..+++.|+++++++|+ +++.||+||+++|+|||||||+.|.|+.|| +|+++++++|++
T Consensus 139 ~~~~~~~~l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~gr----------l~~i~~ii~Gi~ 208 (393)
T PRK10537 139 FAVISITSLLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESAR----------LFTISVIILGIT 208 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHHH----------HHHHHHHHHHHH
Confidence 4444555566777887777774 899999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHH
Q psy17959 749 VISMCFNLIQEEII-FMIKK 767 (790)
Q Consensus 749 ~~~~~~~~i~~~~~-~~~~~ 767 (790)
++++.++.+...++ .++++
T Consensus 209 vf~~~is~i~~p~i~~~l~~ 228 (393)
T PRK10537 209 VFATSISAIFGPVIRGNLKR 228 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988876444 34443
No 9
>KOG3713|consensus
Probab=99.02 E-value=7.4e-10 Score=121.65 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILV 745 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~ 745 (790)
+.+.++.+++-+++.+...|+.|. -|..-|+|||+||+|||||||++|.|..|| +++..=++.
T Consensus 345 lglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gk----------lvas~cil~ 414 (477)
T KOG3713|consen 345 LGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGK----------LVASLCILC 414 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchH----------HHHHHHHHH
Confidence 443333333334444455555663 488999999999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17959 746 GMAVISMCFNLIQEEIIFMIKK 767 (790)
Q Consensus 746 g~~~~~~~~~~i~~~~~~~~~~ 767 (790)
|+.++++.+..|..-|.+-.++
T Consensus 415 GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 415 GVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred hHHHhhcchHhHhhhHHHHHHH
Confidence 9999999999999888875544
No 10
>KOG1419|consensus
Probab=98.82 E-value=5.4e-09 Score=115.04 Aligned_cols=81 Identities=19% Similarity=0.423 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC-----------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLEN-----------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSS 741 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~-----------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~ 741 (790)
++...-+-++.+++.+.+.|..|. -||-||+||.+||+|||||||.+|.|..|| +++..
T Consensus 233 LiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr----------~laa~ 302 (654)
T KOG1419|consen 233 LITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGR----------LLAAC 302 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhH----------HHHHH
Confidence 444444444455566777777773 389999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17959 742 YILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 742 ~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
+.++|+.++++..+.++.-|.-
T Consensus 303 fsligiSFFALPAGILGSGfAL 324 (654)
T KOG1419|consen 303 FSLIGISFFALPAGILGSGFAL 324 (654)
T ss_pred HHHHHHHHHhcccccccchhhh
Confidence 9999999999999999866653
No 11
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.76 E-value=4.8e-08 Score=108.93 Aligned_cols=62 Identities=29% Similarity=0.562 Sum_probs=53.2
Q ss_pred CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy17959 126 WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS-NVKAI 199 (790)
Q Consensus 126 wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~-~~~~~ 199 (790)
|++.||+||+++|+|||||||++|.+.. +|+++.+++++|++++++.++.+...+++ +.++.
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~------------grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~ 229 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSES------------ARLFTISVIILGITVFATSISAIFGPVIRGNLKRL 229 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998765 89999999999999999988877765554 34433
No 12
>KOG1420|consensus
Probab=98.74 E-value=7.5e-09 Score=113.39 Aligned_cols=104 Identities=24% Similarity=0.306 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcC-------------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHH
Q psy17959 672 PIAVSFLIIISFILLGSLIFNKLEN-------------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLV 738 (790)
Q Consensus 672 ~~~~~~~~~~~~~~~g~~~~~~~e~-------------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~ 738 (790)
++.-.+.+++.+|+.+|...+++|+ .+|+|++||-+||++||||||+.-.|..|| +|
T Consensus 249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgr----------lf 318 (1103)
T KOG1420|consen 249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGR----------LF 318 (1103)
T ss_pred hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhH----------HH
Confidence 3455566788888999999999884 589999999999999999999999999999 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Q psy17959 739 SSSYILVGMAVISMCFNLIQEEIIFMIKKFTLKLNKSGGSSGGVCDKN 786 (790)
Q Consensus 739 ~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (790)
.+++++.|+++++..+..|.+.+-. ++|++...+.--|-++-++||.
T Consensus 319 mvffil~glamfasyvpeiielign-r~kyggeyk~ehgkkhivvcgh 365 (1103)
T KOG1420|consen 319 MVFFILGGLAMFASYVPEIIELIGN-RKKYGGEYKAEHGKKHIVVCGH 365 (1103)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHcc-ccccCceeehhcCCeeEEEecc
Confidence 9999999999999999888876655 4444443333334444466653
No 13
>KOG1545|consensus
Probab=98.71 E-value=1.8e-09 Score=112.97 Aligned_cols=59 Identities=24% Similarity=0.474 Sum_probs=51.3
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVK 197 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~~~ 197 (790)
|..||+||++||+|||||||++|.+.. |+++..+..+.|+..+|+.+-+|.+.+..-+|
T Consensus 393 SIPdaFWwavVTMTTVGYGDm~P~Tvg------------GKIVGslCAiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 393 SIPDAFWWAVVTMTTVGYGDMVPVTVG------------GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred cCcccceEEEEEEEeeccccceecccC------------ceehhhHHhhhhheEecccccEEEecccceee
Confidence 489999999999999999999999876 78888899999999999998888776655443
No 14
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.65 E-value=4e-08 Score=120.79 Aligned_cols=53 Identities=13% Similarity=0.382 Sum_probs=49.9
Q ss_pred chhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 701 DGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 701 da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
.|+||+++|+|||||||++|.+..+| +|+++++++|++++++.++.++..+..
T Consensus 253 ~slYwai~TmtTVGYGDi~p~t~~E~----------i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 253 SAIYWSITTMTTVGYGDLHAVNTIEM----------IFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHhhccCCCcCCCccchH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999 999999999999999999999987764
No 15
>KOG1545|consensus
Probab=98.62 E-value=2e-08 Score=105.12 Aligned_cols=56 Identities=18% Similarity=0.408 Sum_probs=50.0
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEII 762 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 762 (790)
-|..||+||++||+|||||||.+|.|..|| ++..+-.+.|+..+++..-+|...+.
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGK----------IVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGK----------IVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCce----------ehhhHHhhhhheEecccccEEEeccc
Confidence 589999999999999999999999999999 77888888999999888888775554
No 16
>KOG1419|consensus
Probab=98.59 E-value=5.4e-08 Score=107.31 Aligned_cols=58 Identities=29% Similarity=0.501 Sum_probs=51.4
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNV 196 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~~ 196 (790)
+|.||+||..||+|||||||.+|.+-. +++++.++.++|++++++.-+++.+-+.-++
T Consensus 269 TyADALWWG~ITltTIGYGDk~P~TWl------------Gr~laa~fsligiSFFALPAGILGSGfALKV 326 (654)
T KOG1419|consen 269 TYADALWWGVITLTTIGYGDKTPQTWL------------GRLLAACFSLIGISFFALPAGILGSGFALKV 326 (654)
T ss_pred hHHHHHHhhheeEEeeccCCcCcccch------------hHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 599999999999999999999998644 9999999999999999999998877655433
No 17
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.48 E-value=1.1e-07 Score=116.84 Aligned_cols=55 Identities=24% Similarity=0.529 Sum_probs=50.1
Q ss_pred CccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 128 FPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 128 f~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
|+.|+||+++|+|||||||++|.+.. .++++++++++|+++.+++++.+...+.+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~------------E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTI------------EMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccc------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999999876 88999999999999999999999987765
No 18
>KOG4390|consensus
Probab=98.26 E-value=1.4e-07 Score=99.50 Aligned_cols=80 Identities=15% Similarity=0.319 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHH
Q psy17959 677 FLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAV 749 (790)
Q Consensus 677 ~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~ 749 (790)
++.+..-|++.|-++++.|. -|..-|+|+++||+||.||||.+|.|.+|| +|..+-.+.|+.+
T Consensus 328 lFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGK----------IfGsiCSLSGVLV 397 (632)
T KOG4390|consen 328 LFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGK----------IFGSICSLSGVLV 397 (632)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHH----------HhhhhhcccceEE
Confidence 33344444555666666673 478899999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17959 750 ISMCFNLIQEEIIFMIK 766 (790)
Q Consensus 750 ~~~~~~~i~~~~~~~~~ 766 (790)
+++..-+|...+.+..+
T Consensus 398 IALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 398 IALPVPVIVSNFSRIYH 414 (632)
T ss_pred EeccccEEEechhHHHh
Confidence 99988877766665443
No 19
>KOG3193|consensus
Probab=98.16 E-value=3.3e-06 Score=92.58 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc-----CCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHH
Q psy17959 670 RVPIAVSFLIIISFILLGSLIFNKLE-----NWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYIL 744 (790)
Q Consensus 670 ~~~~~~~~~~~~~~~~~g~~~~~~~e-----~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~ 744 (790)
.+.+.+.+..++++++.|....-+++ +.+.+.++||.+||++||||||.+|--.+.+ +..+++|.
T Consensus 184 ~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sq----------l~~vi~ic 253 (1087)
T KOG3193|consen 184 FRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQ----------LCVVILIC 253 (1087)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhh----------HHHHHHHH
Confidence 34566677778888888888887776 4799999999999999999999999966665 77888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17959 745 VGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 745 ~g~~~~~~~~~~i~~~~~~ 763 (790)
++++++.--+..++....+
T Consensus 254 val~~ip~q~~~l~~tw~e 272 (1087)
T KOG3193|consen 254 VALGLIPKQLDELGQTWSE 272 (1087)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 8888888877777754433
No 20
>KOG1420|consensus
Probab=98.14 E-value=3.1e-06 Score=93.35 Aligned_cols=82 Identities=18% Similarity=0.413 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhhhhceeeecccc----c---------CcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhh
Q psy17959 511 PITLCLMIMVGYIYGGAVLFSKWED----W---------NILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLEL 577 (790)
Q Consensus 511 ~~~~~l~~~~~~i~~ga~~f~~~e~----w---------~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~ 577 (790)
.+.-.+.+++..++.+|.+.+.+|+ | +|.+++||.++|++||||||+.-.+..||
T Consensus 249 rl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgr------------ 316 (1103)
T KOG1420|consen 249 RLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGR------------ 316 (1103)
T ss_pred hHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhH------------
Confidence 4455556666777788888887765 4 79999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 578 SFILCAMYLMLGMALIAMCFNLMQEEVVH 606 (790)
Q Consensus 578 ~~~~~~~~il~Gl~~~~~~~~~~~~~~~~ 606 (790)
+|.++|++.|+++++-.+.-+.+.+-+
T Consensus 317 --lfmvffil~glamfasyvpeiielign 343 (1103)
T KOG1420|consen 317 --LFMVFFILGGLAMFASYVPEIIELIGN 343 (1103)
T ss_pred --HHHHHHHHHHHHHHHhhhHHHHHHHcc
Confidence 899999999999998877666665543
No 21
>KOG4390|consensus
Probab=97.98 E-value=7.5e-07 Score=94.19 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=66.7
Q ss_pred HHHHhhhhhceeeecccc------cCcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHHHHHHH
Q psy17959 518 IMVGYIYGGAVLFSKWED------WNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYLMLGMA 591 (790)
Q Consensus 518 ~~~~~i~~ga~~f~~~e~------w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gl~ 591 (790)
+.+..|++..++|..-.+ -+..-||||+++||||.||||+||.+-.|+ +|..+.-+.|+.
T Consensus 331 LtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGK--------------IfGsiCSLSGVL 396 (632)
T KOG4390|consen 331 LTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGK--------------IFGSICSLSGVL 396 (632)
T ss_pred HHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHH--------------HhhhhhcccceE
Confidence 344556666666654322 356788999999999999999999988877 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy17959 592 LIAMCFNLMQEEVVHKMRTCSEVTQR 617 (790)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (790)
++++.+.++.+.+.+.++...+.-+|
T Consensus 397 VIALPVPvIVSNFSRIYHQNQRADKR 422 (632)
T KOG4390|consen 397 VIALPVPVIVSNFSRIYHQNQRADKR 422 (632)
T ss_pred EEeccccEEEechhHHHhhhhhhhHH
Confidence 99999998888887777665544333
No 22
>KOG0498|consensus
Probab=97.92 E-value=7.1e-06 Score=96.55 Aligned_cols=55 Identities=13% Similarity=0.333 Sum_probs=50.5
Q ss_pred ccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 699 FLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 699 ~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
|.-|+||++.|+|||||||.+|.+..-+ +|+++++++|+++.+++||+++..+++
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~----------iFsi~~mi~GllL~A~lIGNmt~~iqs 349 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEK----------IFSIFIMLFGLLLFAYLIGNMTALLQS 349 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHH----------HHHHHHHHHhHHHHHHHHhhHHHhHHH
Confidence 4458999999999999999999987666 999999999999999999999988886
No 23
>KOG3684|consensus
Probab=97.77 E-value=0.00013 Score=79.98 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHHHHHhHHhhccc--C------CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHH
Q psy17959 101 PIWLCVFLVISYIIGGAFLFSHWE--P------WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSL 172 (790)
Q Consensus 101 ~~~~~~~~~~~~i~~ga~~~~~~e--~------wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~ 172 (790)
|..+.+.+.+.+.++.+.++..-| . -.|.+++|+-.||+.+|||||++|.+.- |+.++++
T Consensus 253 Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~Tyc------------Gr~v~l~ 320 (489)
T KOG3684|consen 253 PGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYC------------GRGVALL 320 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccc------------cchHHHH
Confidence 444444445556667777777665 2 2389999999999999999999999876 8889888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17959 173 YLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 173 ~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
--++|.++.|+++.++...+..
T Consensus 321 tGivGa~~sallvAvisRKLeL 342 (489)
T KOG3684|consen 321 TGIVGAGCSSLLVAVIARKLEL 342 (489)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 8999999999999988876553
No 24
>KOG3684|consensus
Probab=97.72 E-value=4.1e-05 Score=83.67 Aligned_cols=82 Identities=20% Similarity=0.390 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc--C------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHH
Q psy17959 671 VPIAVSFLIIISFILLGSLIFNKLE--N------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSY 742 (790)
Q Consensus 671 ~~~~~~~~~~~~~~~~g~~~~~~~e--~------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~ 742 (790)
++....++..+.+|++.+..+...| + -++++++|+..+|+-+|||||++|.|-.|| ..+++-
T Consensus 252 ~Pg~vL~vftl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr----------~v~l~t 321 (489)
T KOG3684|consen 252 CPGTVLLVFTLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCGR----------GVALLT 321 (489)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCccccc----------hHHHHh
Confidence 3455666777888888898888877 2 359999999999999999999999999999 778888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17959 743 ILVGMAVISMCFNLIQEEII 762 (790)
Q Consensus 743 ~~~g~~~~~~~~~~i~~~~~ 762 (790)
.++|.++.+.++.++++-+.
T Consensus 322 GivGa~~sallvAvisRKLe 341 (489)
T KOG3684|consen 322 GIVGAGCSSLLVAVIARKLE 341 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 89999999999999986654
No 25
>KOG0498|consensus
Probab=97.67 E-value=2.3e-05 Score=92.40 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=56.2
Q ss_pred CcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy17959 537 NILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVT 615 (790)
Q Consensus 537 ~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (790)
-|.-|+||++.||||+||||..|.+..-. +|+++++++|+.++|++++-|+..+++...+..++.
T Consensus 294 kY~~aLyw~l~tLstvG~g~~~s~~~~E~--------------iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r 358 (727)
T KOG0498|consen 294 KYVYALYWGLSTLSTVGYGLVHANNMGEK--------------IFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMR 358 (727)
T ss_pred HHHHHHHHHhhHhhhccCCccCCCCcHHH--------------HHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHH
Confidence 57889999999999999999999866433 999999999999999999999999988766554443
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.36 E-value=0.00026 Score=77.43 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-------cC--------------CCccchhhheeeeeeccccCC--cccCCCcccccc
Q psy17959 673 IAVSFLIIISFILLGSLIFNKL-------EN--------------WTFLDGTFFCFTSLGTIGFGE--LIPGESYDRTLR 729 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~-------e~--------------~s~~da~Y~~~vt~tTVGyGD--~~p~t~~gr~~~ 729 (790)
+.+.++..++.+++.|++|+.+ +. -+|.+|++|++-|.||||||. +.|..+.+-
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~--- 114 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAI--- 114 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHH---
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhH---
Confidence 3344456677777778777652 11 489999999999999999999 455544443
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 730 GNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 730 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
++.++..++|+.+.+.++|.+-.-+.+
T Consensus 115 -------~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 115 -------FLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667889999999999999888655443
No 27
>KOG0501|consensus
Probab=97.09 E-value=0.00057 Score=76.35 Aligned_cols=56 Identities=18% Similarity=0.523 Sum_probs=51.7
Q ss_pred CccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 698 TFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 698 s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
-|..++||+++++||||||.+.|.|..-| +|++..+++|-.+-+..++.++..|+.
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EK----------iF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEK----------IFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 37789999999999999999999999999 999999999999999999999877775
No 28
>KOG3193|consensus
Probab=96.55 E-value=0.0047 Score=68.56 Aligned_cols=30 Identities=27% Similarity=0.609 Sum_probs=26.3
Q ss_pred cCcccceeEEEEeecccccCCCccCCCcCC
Q psy17959 536 WNILDGSYFCFISLSTIGFGDIVPGDKITG 565 (790)
Q Consensus 536 w~~~da~Yf~~itltTIGfGD~~P~~~~~~ 565 (790)
.+.+.++||.++|++||||||.+|.--+++
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~sq 245 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWASQ 245 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchhh
Confidence 688999999999999999999999755443
No 29
>KOG0501|consensus
Probab=96.50 E-value=0.0031 Score=70.62 Aligned_cols=55 Identities=25% Similarity=0.482 Sum_probs=46.6
Q ss_pred CccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 128 FPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 128 f~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
|+.++||+..++||||||.+.|.++. .++|.+..+++|-.+-|.+++-+..-+.+
T Consensus 424 YissLYfTMt~mttvGFGNiA~~TD~------------EKiF~v~mMii~aLLYAtIFG~vTTI~QQ 478 (971)
T KOG0501|consen 424 YISSLYFTMTCMTTVGFGNIAPNTDN------------EKIFGVCMMIIGALLYATIFGHVTTIIQQ 478 (971)
T ss_pred ehhhhhhhhhhhhcccccccCCCccH------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88999999999999999999999876 67888889999988888887766554444
No 30
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=95.95 E-value=0.0073 Score=66.17 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=42.1
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+|.+|++||+-|+||||||...|... ..++.+++.+=.++|+.+.+.+++++-.++.+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~----------c~~a~~l~~~q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPE----------CPYAIFLVTIQSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhheeEEEEEEEEeccCCcccCCC----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999998544321 23466677778899999999998887776554
No 31
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=91.80 E-value=0.083 Score=59.58 Aligned_cols=42 Identities=19% Similarity=0.403 Sum_probs=30.5
Q ss_pred cCCCccchhhheeeeeeccccC--C-cccCCCcccccccccchhhHHHHHHHHHH
Q psy17959 695 ENWTFLDGTFFCFTSLGTIGFG--E-LIPGESYDRTLRGNKNISVLVSSSYILVG 746 (790)
Q Consensus 695 e~~s~~da~Y~~~vt~tTVGyG--D-~~p~t~~gr~~~~~~~~~~~~~~~~~~~g 746 (790)
.+.++.|+++=++-+++|||.+ . ....++.+| +..++.|++|
T Consensus 345 ~~~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k----------~il~~~M~~G 389 (390)
T TIGR00933 345 SGYDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGK----------LILIVLMFIG 389 (390)
T ss_pred cCCCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHH----------HHHHHHHHcC
Confidence 3789999999999999999964 2 334556677 5555555544
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=91.61 E-value=0.33 Score=48.07 Aligned_cols=56 Identities=20% Similarity=0.430 Sum_probs=39.7
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHH-HHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVS-SSYILVGMAVISMCFNLI 757 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~i 757 (790)
-++..|+|+.+.++||.|+||..|.....+ .....++. ++.++.++.++.++++.+
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPSCMSAR-----SWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHHHHHTT-----STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcccccccccccc-----chhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 479999999999999999999999721000 12223555 666677777777777654
No 33
>KOG0500|consensus
Probab=91.49 E-value=0.54 Score=52.78 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=47.8
Q ss_pred chhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy17959 701 DGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIFMIKKFTLKLNKSG 776 (790)
Q Consensus 701 da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 776 (790)
=++|||.-|+||+| --..|.+..- ..|.++=.++|+.++|..+|.++..+..+-.......++..
T Consensus 186 ~S~YWStLTlTTiG-e~P~P~t~~e----------y~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mD 250 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIG-EQPPPVTSSE----------YAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMD 250 (536)
T ss_pred HHHHHHhhhhhhcc-CCCCCCcCch----------hhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHH
Confidence 38999999999998 4456665433 37889999999999999999998877764444444333333
No 34
>KOG0500|consensus
Probab=89.80 E-value=0.71 Score=51.89 Aligned_cols=52 Identities=31% Similarity=0.335 Sum_probs=38.3
Q ss_pred cceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 130 DSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 130 da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
-++|||-.|+||||=- -.|.++. .-+|.++=.++|+.++|.+++-+.+.+.+
T Consensus 186 ~S~YWStLTlTTiGe~-P~P~t~~------------ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 186 YSLYWSTLTLTTIGEQ-PPPVTSS------------EYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHHhhhhhhccCC-CCCCcCc------------hhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 3799999999999831 1222222 34577778899999999999988887665
No 35
>KOG3827|consensus
Probab=89.47 E-value=1.3 Score=48.34 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhc-------------C--------CCccchhhheeeeeeccccCCcccCCCccc
Q psy17959 668 RFRVPIAVSFLIIISFILLGSLIFNKLE-------------N--------WTFLDGTFFCFTSLGTIGFGELIPGESYDR 726 (790)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~g~~~~~~~e-------------~--------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr 726 (790)
+.+..+.+..+.+++-|++.+++++.+- + -||.-||=|++-|=||||||-=.++..=-
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP- 139 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECP- 139 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccCh-
Confidence 3445555556667777888888888631 1 27899999999999999999877765322
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 727 TLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
.+++..++..++|+.+=+..+|.+-.-+.+
T Consensus 140 -------~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 140 -------EAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 233666778888888888877776544443
No 36
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=88.51 E-value=0.52 Score=46.65 Aligned_cols=55 Identities=29% Similarity=0.538 Sum_probs=38.4
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALC-SLYLLFGIALLAMSFNLV 188 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~-~~~~l~Gl~~~~~~i~~i 188 (790)
+|..|+|+.+.++||.|+||..|.... .......++. .+.++.++.+++++++.+
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMS-------ARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHH-------TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCcccccccccc-------ccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 488999999999999999999996210 0011244444 566667778888887754
No 37
>PRK10750 potassium transporter; Provisional
Probab=84.44 E-value=1.8 Score=50.17 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeecccc--CCc----ccCCCcccccccccchhhHHHHHHHH
Q psy17959 671 VPIAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGF--GEL----IPGESYDRTLRGNKNISVLVSSSYIL 744 (790)
Q Consensus 671 ~~~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGy--GD~----~p~t~~gr~~~~~~~~~~~~~~~~~~ 744 (790)
.++...+++.++++++++++. ..++.+..+|+--+..++++||. |.. ...++.+| ++.++.|+
T Consensus 395 ~~v~~~~~ly~~~~~~~~~~l-~~~g~~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K----------~il~~~Ml 463 (483)
T PRK10750 395 EAVWGFFSAYALVFIVSMLAI-IATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAK----------WILIANML 463 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhcCCCCCchhhccccccCCHHHH----------HHHHHHHH
Confidence 344444555555556666655 56788999999888889998885 433 23455666 55666666
Q ss_pred HH
Q psy17959 745 VG 746 (790)
Q Consensus 745 ~g 746 (790)
+|
T Consensus 464 lG 465 (483)
T PRK10750 464 FG 465 (483)
T ss_pred HH
Confidence 55
No 38
>KOG0499|consensus
Probab=82.31 E-value=2.3 Score=48.90 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---------------cCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKL---------------ENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVL 737 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~---------------e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~ 737 (790)
++..+.-++.++=+-+.+|+.. +|-.|.-|+||++-|++||| |...|.+. +-++
T Consensus 363 V~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~----------~E~V 431 (815)
T KOG0499|consen 363 VIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTL----------FEIV 431 (815)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhc-CCCCcchH----------HHHH
Confidence 3333444444445566666642 23489999999999999999 99999852 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 738 VSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 738 ~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
|-.+=-+.|+-+++.++|.+-+.+-.
T Consensus 432 f~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 432 FQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555567999999999988766653
No 39
>KOG3827|consensus
Probab=81.62 E-value=5.4 Score=43.83 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=43.0
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+|.-||-|++=|=||||||--.++..= +.++++.++=.++|+.+-+.+++.+-..+.+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeC----------P~aI~ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEEC----------PEAIFLLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477889999999999999988877532 2355566666788888777777776665544
No 40
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=77.87 E-value=8.3 Score=43.51 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcc
Q psy17959 677 FLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELI 719 (790)
Q Consensus 677 ~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~ 719 (790)
+.+-++..+++++.|+..+..+++||++.++.+++|=||.=..
T Consensus 107 ~~iy~~lt~l~~~~~~~~g~~~~~~Aif~avSa~~taGFs~~~ 149 (390)
T TIGR00933 107 FVIYLLGTILLAVRFVLTGWMPLFDAIFHSISAFNNGGFSTHS 149 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCCcCCCC
Confidence 3344444445555555543379999999999999999986443
No 41
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=75.85 E-value=6 Score=46.06 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeecccc--CCcccCCCcc
Q psy17959 670 RVPIAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGF--GELIPGESYD 725 (790)
Q Consensus 670 ~~~~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGy--GD~~p~t~~g 725 (790)
..+....+++.+++++++++.....+.-++.|+++=++-++.|||. |-..|.++.+
T Consensus 396 i~~~~~~~~l~~~~~~i~~~~l~~~~~~~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~ 453 (499)
T COG0168 396 IRKALAFFFLYLLILIIGALILILTGYDPFIDALFEVVSAFGTVGLSLGITGDLASNF 453 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHhhcCCCCCCCCCCCcccc
Confidence 3444555556666677777777776644899999999999999997 4555445555
No 42
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=75.01 E-value=0.44 Score=53.02 Aligned_cols=64 Identities=22% Similarity=0.389 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCC-ccchhhheeeeeecccc--CCcccC-CCc---ccccccccchhhHHHHHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLENWT-FLDGTFFCFTSLGTIGF--GELIPG-ESY---DRTLRGNKNISVLVSSSYILV 745 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~~s-~~da~Y~~~vt~tTVGy--GD~~p~-t~~---gr~~~~~~~~~~~~~~~~~~~ 745 (790)
....+++.++++++++......+... +.|+++=++-.++|||. |...|. +.. +| ++.++.|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K----------~vli~~M~~ 337 (354)
T PF02386_consen 268 AFAFFFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGITTPNLSFSGPFSK----------LVLIFLMLL 337 (354)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SSS----SSS-HHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHH----------HHHHHHHHH
Confidence 33344455555666777777766544 79999999999999996 553343 333 55 555666655
Q ss_pred H
Q psy17959 746 G 746 (790)
Q Consensus 746 g 746 (790)
|
T Consensus 338 G 338 (354)
T PF02386_consen 338 G 338 (354)
T ss_dssp H
T ss_pred h
Confidence 5
No 43
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=71.70 E-value=3.8 Score=38.85 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIFM 764 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 764 (790)
.++.+++|+++-+++. +-++..|.+..+| ++.++|.++.+.+++...+.++..+...
T Consensus 43 ~~~~~~~~~~~~~~~~-q~~~~~~~s~s~R----------il~~~w~l~~lil~~~Yta~L~s~Lt~~ 99 (148)
T PF00060_consen 43 FSLSNSFWYTFGTLLQ-QGSSIRPRSWSGR----------ILLAFWWLFSLILIASYTANLTSFLTVP 99 (148)
T ss_dssp HHHHHHHHHCCCCCHH-HHH------HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHhhcc-ccccccccchHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3578899999988887 6678999998888 8899999999999999999998877653
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=58.46 E-value=9.2 Score=48.40 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 168 ALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 168 ~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
.|..+.+++.+.++-|+++++...+.+
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsE 1424 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGE 1424 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556678888999888887765
No 45
>PRK10750 potassium transporter; Provisional
Probab=57.45 E-value=35 Score=39.62 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHHhhhhhceeeecccc--cCcccceeEEEEeecccccCCC
Q psy17959 516 LMIMVGYIYGGAVLFSKWED--WNILDGSYFCFISLSTIGFGDI 557 (790)
Q Consensus 516 l~~~~~~i~~ga~~f~~~e~--w~~~da~Yf~~itltTIGfGD~ 557 (790)
.+.-++.-++||+-|..... -+|.||++=++--+||-|.-=+
T Consensus 74 ~~~W~~~~l~galPf~~~g~~~~s~~dA~FEs~Sg~TTTGaTvl 117 (483)
T PRK10750 74 VLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTL 117 (483)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccccchhcc
Confidence 33334445566666666544 6899999888888899996543
No 46
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=51.63 E-value=5.3 Score=49.37 Aligned_cols=13 Identities=0% Similarity=0.077 Sum_probs=5.9
Q ss_pred cceehhhHHHHhH
Q psy17959 361 GKITTIAYAIAGM 373 (790)
Q Consensus 361 g~~~~i~y~~~gi 373 (790)
.+.|-.+|+++++
T Consensus 531 ~~~f~~L~~~~~l 543 (784)
T PF04931_consen 531 AQAFELLLSLVLL 543 (784)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 47
>KOG0499|consensus
Probab=51.30 E-value=24 Score=41.06 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=41.8
Q ss_pred CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 126 WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 126 wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
-.|+-++||+.-|++||| |---|.+. .-.+|..+=-+.|+..++++|+-++..+..
T Consensus 402 n~YiRCyyfa~kt~~tiG-~~P~P~~~------------~E~Vf~~~~w~mGVFvFslliGQmRDvi~a 457 (815)
T KOG0499|consen 402 NEYIRCYYFAVKTLITIG-GLPEPQTL------------FEIVFQLLNWFMGVFVFSLLIGQMRDVIGA 457 (815)
T ss_pred CceeeehhhHHHHHHHhc-CCCCcchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999 54444322 245565555678999999999988886554
No 48
>KOG3676|consensus
Probab=51.09 E-value=70 Score=38.70 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=37.7
Q ss_pred Cccceeeeeeec--ccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 128 FPDSAYFCFITL--TTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 128 f~da~Yf~~iTl--tTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
..|++.-.+.|+ .|||+||..-..+. .+......+|....++.-+.++-|+|....+.+..
T Consensus 587 ~~ds~~~~~l~lf~ftig~~dl~~~~~~------~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~ 649 (782)
T KOG3676|consen 587 PYDSFSTFLLTLFEFTIGMGDLEACENT------DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYET 649 (782)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhhcccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 566766666666 79999999776543 11222334444445566666777777777665544
No 49
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=49.44 E-value=82 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 583 AMYLMLGMALIAMCFNLMQEEVVH 606 (790)
Q Consensus 583 ~~~il~Gl~~~~~~~~~~~~~~~~ 606 (790)
.+|.-+|+.++++.+..++.-..+
T Consensus 18 yVWlA~~~tll~l~~l~v~sv~qr 41 (67)
T COG3114 18 YVWLAVGMTLLPLAVLVVHSVLQR 41 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999888776654433
No 50
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=46.39 E-value=1.2e+02 Score=35.48 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=24.4
Q ss_pred hhcCCCccchhhheeeeeeccccCCcccCC
Q psy17959 693 KLENWTFLDGTFFCFTSLGTIGFGELIPGE 722 (790)
Q Consensus 693 ~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t 722 (790)
...+++++||++-++.+++|=||- .++.+
T Consensus 193 ~~~gm~~~dAi~hs~Sa~~ngGFS-~~~~S 221 (499)
T COG0168 193 ILAGMPLFDAIFHSMSAFNNGGFS-THDAS 221 (499)
T ss_pred HhccCCHHHHHHHHHHHhhcCCCC-CCcch
Confidence 346789999999999999999997 66554
No 51
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=41.57 E-value=28 Score=32.76 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=35.8
Q ss_pred CccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 128 FPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 128 f~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+.+++|+++-+++. +-++..|.+. ..|++.+.|.++.+.+.+...+.+...+..
T Consensus 45 ~~~~~~~~~~~~~~-q~~~~~~~s~------------s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 45 LSNSFWYTFGTLLQ-QGSSIRPRSW------------SGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHCCCCCHH-HHH------H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc-ccccccccch------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777888777666 5567777644 388999999999998888777777765553
No 52
>KOG0943|consensus
Probab=38.57 E-value=14 Score=45.83 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=12.4
Q ss_pred cccCCCcceehhhHHHHhhHHHH
Q psy17959 35 APKTTLGKVATIFYAIVGIPLML 57 (790)
Q Consensus 35 ~P~T~~Gr~f~i~yaliGIPl~l 57 (790)
+|.|-.|-...++=++.--|-++
T Consensus 1118 ~p~t~Q~~alqiId~flk~Pamf 1140 (3015)
T KOG0943|consen 1118 APGTGQGPALQIIDGFLKEPAMF 1140 (3015)
T ss_pred CCcCCCCCcccccCCccCCcchh
Confidence 35566666665555555444443
No 53
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=38.36 E-value=1.4e+02 Score=29.17 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=37.2
Q ss_pred ccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 699 FLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIFMI 765 (790)
Q Consensus 699 ~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 765 (790)
+...+.+.+.++..+=+|++.|..-.-| ...........++-.+..+.+.+..+...+.+..
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l~~~-----~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~ 147 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKALARR-----HPEKIALRLAPLLRVLMILLYPLVWLLSFISNKI 147 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888999999854333 1222233344555555555555555555554433
No 54
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=38.13 E-value=68 Score=39.84 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=16.3
Q ss_pred hhHHHHhhHHHHHHHHHHH-HHHHHHHHHHH
Q psy17959 46 IFYAIVGIPLMLLCLSNIG-DIMAHSFRFLY 75 (790)
Q Consensus 46 i~yaliGIPl~l~~l~~~g-~~l~~~~~~l~ 75 (790)
++..++++-+++++|+.++ +++...+..+-
T Consensus 457 VVL~l~~liy~Fv~LaIv~dDyFVPSLe~IA 487 (1096)
T TIGR00927 457 VVLHIFGMMYVFVALAIVCDEYFVPALGVIT 487 (1096)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444445556666655 56766665544
No 55
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=37.62 E-value=17 Score=37.75 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.4
Q ss_pred Ccceeh
Q psy17959 360 LGKITT 365 (790)
Q Consensus 360 ~g~~~~ 365 (790)
+||+|-
T Consensus 139 GGrif~ 144 (314)
T PF06524_consen 139 GGRIFK 144 (314)
T ss_pred CCeEEE
Confidence 344443
No 56
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=37.08 E-value=16 Score=44.94 Aligned_cols=6 Identities=17% Similarity=0.783 Sum_probs=2.6
Q ss_pred ccceee
Q psy17959 129 PDSAYF 134 (790)
Q Consensus 129 ~da~Yf 134 (790)
-|..+|
T Consensus 562 RDllFy 567 (1096)
T TIGR00927 562 RDVSFY 567 (1096)
T ss_pred hhHHHH
Confidence 355333
No 57
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=36.74 E-value=73 Score=37.45 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=33.2
Q ss_pred CCccchhhheeeeeeccc--cCCcccCCCcccccccccchhhHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIG--FGELIPGESYDRTLRGNKNISVLVSSSYILVG 746 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVG--yGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g 746 (790)
.++.|.+|=.+-...|+| +|.+.|.|+.+| +..++.+++|
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~n----------iil~~~M~iG 491 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWN----------LTLGIAMLLG 491 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHH----------HHHHHHHHHH
Confidence 689999999999999999 567899999998 5566666666
No 58
>KOG3676|consensus
Probab=36.40 E-value=49 Score=39.99 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=40.8
Q ss_pred CcccceeEEEEee--cccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17959 537 NILDGSYFCFISL--STIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYL-MLGMALIAMCFNLMQEEVVHKMRTC 611 (790)
Q Consensus 537 ~~~da~Yf~~itl--tTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~i-l~Gl~~~~~~~~~~~~~~~~~~~~~ 611 (790)
+..|++.-.+.|+ .|||+||+.-..+. ++....+++.++|+ +.-+.++-|++.+|.+.+....+..
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~---------~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENT---------DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhcccc---------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 3456644445555 79999998875443 12233333334443 4567778888889988887765544
No 59
>KOG1832|consensus
Probab=35.66 E-value=15 Score=44.38 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=6.1
Q ss_pred eeccccccccc
Q psy17959 348 IAGYGNVAPIT 358 (790)
Q Consensus 348 tiGyg~~~p~t 358 (790)
..|.|-+.|.-
T Consensus 1268 ~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1268 DYGGGGFHPSG 1278 (1516)
T ss_pred ecccccccCCC
Confidence 33566666643
No 60
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=34.74 E-value=16 Score=42.50 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=12.3
Q ss_pred EEEeccccccccccCCCcceehh
Q psy17959 24 ILSSVPGYGHIAPKTTLGKVATI 46 (790)
Q Consensus 24 t~~tTiGYG~i~P~T~~Gr~f~i 46 (790)
+++..+|.-.-.=.+..||.+.+
T Consensus 272 ~vl~s~GiRYn~YCSn~~RT~l~ 294 (1001)
T COG5406 272 VVLLSIGIRYNGYCSNMSRTILT 294 (1001)
T ss_pred eEEEEeeeeeccccccccceEEe
Confidence 46666765433233455666655
No 61
>KOG2302|consensus
Probab=32.05 E-value=4.4e+02 Score=33.15 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred ehhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--------CCCcccccchhhhHHHHHHHHHHHH
Q psy17959 44 ATIFYAIVGIPLMLLCLSNIGDIMAHSFRFLYWKDFDFFTEYYDTKG--------VGNAEQIKPVPIWLCVFLVISYIIG 115 (790)
Q Consensus 44 f~i~yaliGIPl~l~~l~~~g~~l~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (790)
|.++-+++.|-++..--. |..++..+|.++..+-.+..+...+.. +..........++++...+++|-++
T Consensus 1200 flv~vsviDilvs~asa~--g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgil 1277 (1956)
T KOG2302|consen 1200 FLVAVSVIDILVSQASAG--GAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGIL 1277 (1956)
T ss_pred HHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhh----------------cc----cCCCCcccee---------eeeeecccc-------------cccccccCCCC
Q psy17959 116 GAFLFS----------------HW----EPWGFPDSAY---------FCFITLTTI-------------GFGDFVPAQKS 153 (790)
Q Consensus 116 ga~~~~----------------~~----e~wsf~da~Y---------f~~iTltTI-------------GfGDi~P~~~~ 153 (790)
|-.+|. .. .+..|..-.| ++..+|+|- |-=|..|..+.
T Consensus 1278 gvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nh 1357 (1956)
T KOG2302|consen 1278 GVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNH 1357 (1956)
T ss_pred HHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccC
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCccccCCchhh
Q psy17959 154 TDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEE 233 (790)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ee~ 233 (790)
+...-..|.++++++--.++.|+++++++.+-+..++...
T Consensus 1358 --------npwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~-------------------------------- 1397 (1956)
T KOG2302|consen 1358 --------NPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEA-------------------------------- 1397 (1956)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Q ss_pred hhcccchhHHHhhhhhhhhhhcccccccCC
Q psy17959 234 EEEEDEEEEEEEEEGEEEETETASSSTAKN 263 (790)
Q Consensus 234 ~e~~~~e~e~e~~e~~~~~~~~~~~~~~~~ 263 (790)
|+.++.||+-..+-.++.+.-+++
T Consensus 1398 ------EeArRreEKrLrrlekkrR~Aq~k 1421 (1956)
T KOG2302|consen 1398 ------EEARRREEKRLRRLEKKRRAAQRK 1421 (1956)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhccCC
No 62
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=31.74 E-value=23 Score=39.30 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHhhcccCCC-Cccceeeeeeecccccccccc
Q psy17959 106 VFLVISYIIGGAFLFSHWEPWG-FPDSAYFCFITLTTIGFGDFV 148 (790)
Q Consensus 106 ~~~~~~~i~~ga~~~~~~e~ws-f~da~Yf~~iTltTIGfGDi~ 148 (790)
+++.++.+++++.+....+... +.|+++=+.-.++|||.+=-.
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lfe~~Sa~gtvGls~G~ 315 (354)
T PF02386_consen 272 FFLYFIIVFISTLLLSLDGLDFSFFDALFEVISAFGTVGLSLGI 315 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHSS-H--HHHHHHHHHHCTT--S--SS
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcCcCCCCCC
Confidence 3344445556666666655444 788888888899999887433
No 63
>KOG1307|consensus
Probab=29.27 E-value=72 Score=36.28 Aligned_cols=22 Identities=32% Similarity=0.387 Sum_probs=13.6
Q ss_pred Cccceeeeeeeccccccccccc
Q psy17959 128 FPDSAYFCFITLTTIGFGDFVP 149 (790)
Q Consensus 128 f~da~Yf~~iTltTIGfGDi~P 149 (790)
++.++-=.|||-.-||.|-||-
T Consensus 111 lFTSvIGVFIt~~dVGiGTIVG 132 (588)
T KOG1307|consen 111 LFTSVIGVFITQGDVGIGTIVG 132 (588)
T ss_pred HhhhheeEEEecCCcceeeeee
Confidence 4455555666666666666664
No 64
>KOG4440|consensus
Probab=28.93 E-value=46 Score=38.92 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=49.8
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEII 762 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 762 (790)
.++..|+||+.--+.--|-|+=.|.+-.+| +..++|.=+.+.+++.....++..++
T Consensus 612 lnlssAmWF~WGVLLNSGigEgtPRSfSAR----------vLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 612 LNLSSAMWFSWGVLLNSGIGEGTPRSFSAR----------VLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred cchhhhHHHHhHhhhccccCCCCCcchhHH----------HHHHHHhhhheeeehhhhhhhhhhee
Confidence 799999999999999999999999987777 88999999999988888888887665
No 65
>KOG1189|consensus
Probab=27.80 E-value=27 Score=41.63 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=10.6
Q ss_pred EEEeccccccccccCCCcceehh
Q psy17959 24 ILSSVPGYGHIAPKTTLGKVATI 46 (790)
Q Consensus 24 t~~tTiGYG~i~P~T~~Gr~f~i 46 (790)
++++.+|.=.-.=.+..+|.+.|
T Consensus 231 ~I~cs~G~RynsYCSNv~RT~Li 253 (960)
T KOG1189|consen 231 VILCSLGIRYNSYCSNVSRTYLI 253 (960)
T ss_pred eEEeeccchhhhhhccccceeee
Confidence 56666664322223444454433
No 66
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=26.65 E-value=72 Score=38.97 Aligned_cols=180 Identities=9% Similarity=0.158 Sum_probs=0.0
Q ss_pred ehHHHHHHHHHHhhhhhceeeeccccc----------CcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHH
Q psy17959 510 VPITLCLMIMVGYIYGGAVLFSKWEDW----------NILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSF 579 (790)
Q Consensus 510 ~~~~~~l~~~~~~i~~ga~~f~~~e~w----------~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~ 579 (790)
++.-++.+-++.++++++++. ....| .+.-|+|.++-..+.-|| ++.|.+=..-+++
T Consensus 455 v~~Y~~~~~llG~i~l~~wi~-~~~~~~~~l~~~gin~~W~aiFhAVSAFnNAGF-sL~~dSM~~F~~~----------- 521 (800)
T TIGR00934 455 VLVYFLGFNILGFVLLLPWIN-HVKTYSEVVRSKGVSPTWWGFFTAMSAFANLGL-TLTPESMVSFNKN----------- 521 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCccHHHHHhhcCccHHHHHHHHHHHHHhcCCC-CcCCCcchhhccC-----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCccccc
Q psy17959 580 ILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVTQRKSKQQQQQQNSLPNIYSQFNHISTGKYDGKTTPYRGGYCTHA 659 (790)
Q Consensus 580 ~~~~~~il~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (790)
.+..+.+.+-+.+-.+.+..+.+.++....++.....++++............++..-......
T Consensus 522 ~~vllvm~~LIi~GntGFPVllrliiw~~~k~~~~~s~~~e~l~fll~~pRr~~s~Lfps~~T~---------------- 585 (800)
T TIGR00934 522 SYLLLLMIWFIIIGNTGFPIFLRLIIWILFKISPDLSKRKESLGFLLDHPRRCFTLLFPSGATW---------------- 585 (800)
T ss_pred ccHHHHHHHHHHHcccchHHHHHHHHHHHhhccccccchhhhhhhhccCccceecccccccchh----------------
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCC-----------ccchhhheee----eeeccccCCcccCCCc
Q psy17959 660 SDFEPKAFRFRVPIAVSFLIIISFILLGSLIFNKLENWT-----------FLDGTFFCFT----SLGTIGFGELIPGESY 724 (790)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~~s-----------~~da~Y~~~v----t~tTVGyGD~~p~t~~ 724 (790)
+.+...++++++|.++|..+|--+ +++|++.++. -++||-++++.|.+.
T Consensus 586 ---------------ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTAGFntVdls~Lspatl- 649 (800)
T TIGR00934 586 ---------------WLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVSTRTAGFTVVDLSQLHPAIQ- 649 (800)
T ss_pred ---------------hHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcccccccccccchHhcChhHH-
Q ss_pred ccccccccchhhHHHHHHHHHH
Q psy17959 725 DRTLRGNKNISVLVSSSYILVG 746 (790)
Q Consensus 725 gr~~~~~~~~~~~~~~~~~~~g 746 (790)
++.+++|.+|
T Consensus 650 ------------vl~iiLMyIG 659 (800)
T TIGR00934 650 ------------VSYMLMMYVS 659 (800)
T ss_pred ------------HHHHHHHHhc
No 67
>KOG0569|consensus
Probab=26.24 E-value=1.5e+02 Score=34.57 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 583 AMYLMLGMALIAMCFNLMQEEVVHK 607 (790)
Q Consensus 583 ~~~il~Gl~~~~~~~~~~~~~~~~~ 607 (790)
..|+-+|+..+.++.+++.-.++++
T Consensus 307 a~~an~~~g~v~~~~t~~~~~lid~ 331 (485)
T KOG0569|consen 307 AQYANLGIGIVNLLSTLVSPFLIDR 331 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788888888888887777664
No 68
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=26.12 E-value=3.5e+02 Score=33.25 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=21.7
Q ss_pred ccccccccccCCCCcchhhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy17959 140 TTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYL-LFGIALLAMSFNLVQEEVI 193 (790)
Q Consensus 140 tTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~-l~Gl~~~~~~i~~i~~~~~ 193 (790)
+++|.+|+....... ....+.++..+|+ +.-+.++-|+|+.+...+.
T Consensus 569 ~~~G~~~~~~~~~~~-------~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~ 616 (743)
T TIGR00870 569 AIIGLGDLLANEHKF-------TEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQ 616 (743)
T ss_pred HHcCCcccccccccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 468888874332210 1123333333333 3334445555555555444
No 69
>KOG1052|consensus
Probab=25.69 E-value=1.4e+02 Score=36.01 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEII 762 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 762 (790)
|+...++|+++.++..-|-+ ..|.+..+| ++.++|.++++.+.+...+.++..+.
T Consensus 380 ~~~~~~~~~~~~~~~~q~~~-~~p~~~~~R----------ll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 380 FSLLNCLWLTVGSLLQQGSD-EIPRSLSTR----------LLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred eecccchhhhhHHHhccCCC-ccccchhhh----------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677777777777744 999988888 78888999999888888888876655
No 70
>KOG1053|consensus
Probab=25.59 E-value=3e+02 Score=34.12 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=34.9
Q ss_pred ccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 144 FGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 144 fGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
|+..||..++ ...-+++.+.+|.++++.++|.-...++..+++
T Consensus 622 FnnsVpv~nP--------KgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 622 FNNSVPVENP--------KGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred hCCCcCCCCC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888998766 345578999999999999999888777776665
No 71
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.08 E-value=4.6e+02 Score=34.32 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=10.2
Q ss_pred ehhhHHHHhhHHHHHH
Q psy17959 44 ATIFYAIVGIPLMLLC 59 (790)
Q Consensus 44 f~i~yaliGIPl~l~~ 59 (790)
--++|.++|+.-+++.
T Consensus 72 AD~L~~LFGl~AYLLP 87 (1355)
T PRK10263 72 ADTLFFIFGVMAYTIP 87 (1355)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3467778887665554
No 72
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=24.93 E-value=1.6e+03 Score=29.12 Aligned_cols=26 Identities=19% Similarity=0.223 Sum_probs=14.2
Q ss_pred CCccchhhheeeeeeccccCCcccCC
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGE 722 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t 722 (790)
.+|+|.+-..=+|.||-|-.-..|.|
T Consensus 807 ~s~Ld~i~LW~~t~~~~g~~~~~~it 832 (1109)
T PRK10929 807 FGFLENISLWDVTSTVQGVESLQPIT 832 (1109)
T ss_pred HHHhcceeEEeeeceeccccceeeee
Confidence 45666665555566655533445554
No 73
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=24.37 E-value=50 Score=25.56 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=16.3
Q ss_pred CcccceeEEEE---------eecccccCCCcc
Q psy17959 537 NILDGSYFCFI---------SLSTIGFGDIVP 559 (790)
Q Consensus 537 ~~~da~Yf~~i---------tltTIGfGD~~P 559 (790)
+=+|..||+++ -+--|||||..-
T Consensus 16 deld~~yfavtlkvef~tgkllVcigFGDTl~ 47 (60)
T PF04694_consen 16 DELDCAYFAVTLKVEFKTGKLLVCIGFGDTLF 47 (60)
T ss_pred hhhcceeEEEEEEEEEecCcEEEEEecchHHH
Confidence 34688899875 245689999654
No 74
>PLN03223 Polycystin cation channel protein; Provisional
Probab=24.33 E-value=8.6e+02 Score=32.02 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 735 SVLVSSSYILVGMAVISMCFNLIQEEIIFM 764 (790)
Q Consensus 735 ~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 764 (790)
++.|..+.+++.+.++-++++.|.+.+...
T Consensus 1396 PIYFfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1396 MIYFYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777788888889999988887763
No 75
>KOG0262|consensus
Probab=24.16 E-value=1.2e+02 Score=38.72 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.5
Q ss_pred CCcccCCC
Q psy17959 716 GELIPGES 723 (790)
Q Consensus 716 GD~~p~t~ 723 (790)
|-+.|-+.
T Consensus 1569 G~y~pfnR 1576 (1640)
T KOG0262|consen 1569 GGYQPFNR 1576 (1640)
T ss_pred cccccccc
Confidence 44444443
No 76
>KOG4289|consensus
Probab=23.69 E-value=1.6e+02 Score=38.24 Aligned_cols=30 Identities=13% Similarity=0.332 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17959 582 CAMYLMLGMALIAMCFNLMQEEVVHKMRTC 611 (790)
Q Consensus 582 ~~~~il~Gl~~~~~~~~~~~~~~~~~~~~~ 611 (790)
+.-|..+|+++.+++++.+--...+..+..
T Consensus 2167 ~~t~a~~gvslaal~lt~~llls~RsLksn 2196 (2531)
T KOG4289|consen 2167 MTTYAAVGVSLAALLLTFLLLLSLRSLKSN 2196 (2531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456888999998888876655444444433
No 77
>KOG1189|consensus
Probab=22.49 E-value=38 Score=40.55 Aligned_cols=18 Identities=6% Similarity=0.239 Sum_probs=9.9
Q ss_pred EEeccccccccccCCCcc
Q psy17959 25 LSSVPGYGHIAPKTTLGK 42 (790)
Q Consensus 25 ~~tTiGYG~i~P~T~~Gr 42 (790)
..-.+|++|+......+.
T Consensus 338 Fni~lGf~nl~n~~~~~~ 355 (960)
T KOG1189|consen 338 FNISLGFSNLTNPESKNS 355 (960)
T ss_pred EEEeeccccccCcccccc
Confidence 334566766665554444
Done!