Query psy17959
Match_columns 790
No_of_seqs 638 out of 3484
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 18:45:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 100.0 8.2E-33 2.8E-37 293.2 -1.1 229 274-605 34-284 (309)
2 3ukm_A Potassium channel subfa 100.0 3.4E-33 1.2E-37 291.8 -5.5 235 269-607 10-264 (280)
3 3um7_A Potassium channel subfa 100.0 8E-31 2.7E-35 278.0 6.6 173 535-763 113-285 (309)
4 3ukm_A Potassium channel subfa 100.0 5E-30 1.7E-34 267.9 8.1 172 534-763 90-263 (280)
5 2k1e_A Water soluble analogue 99.7 5.2E-17 1.8E-21 145.8 7.2 89 671-769 6-101 (103)
6 3ldc_A Calcium-gated potassium 99.7 4.8E-17 1.6E-21 139.6 5.5 78 674-761 4-81 (82)
7 3ouf_A Potassium channel prote 99.6 2E-16 6.8E-21 140.2 6.4 82 672-763 6-87 (97)
8 3eff_K Voltage-gated potassium 99.6 2.1E-16 7.1E-21 150.0 6.3 88 670-767 5-99 (139)
9 2q67_A Potassium channel prote 99.6 2.8E-16 9.5E-21 143.5 5.1 80 673-762 24-103 (114)
10 2ih3_C Voltage-gated potassium 99.6 2E-15 6.8E-20 139.7 7.3 84 674-767 30-120 (122)
11 3ldc_A Calcium-gated potassium 99.6 9.2E-16 3.1E-20 131.6 4.7 79 102-192 3-81 (82)
12 3vou_A ION transport 2 domain 99.6 3.1E-15 1E-19 143.4 7.6 77 673-759 27-103 (148)
13 3ouf_A Potassium channel prote 99.6 1.8E-15 6.2E-20 134.0 5.2 82 100-193 5-86 (97)
14 2a9h_A Voltage-gated potassium 99.6 1.4E-15 4.7E-20 146.3 4.5 83 674-766 53-142 (155)
15 3eff_K Voltage-gated potassium 99.5 2.5E-15 8.5E-20 142.5 5.7 86 102-199 8-100 (139)
16 2q67_A Potassium channel prote 99.5 2.7E-15 9.2E-20 137.0 4.1 80 101-192 23-102 (114)
17 2k1e_A Water soluble analogue 99.5 2.7E-15 9.2E-20 134.6 3.9 85 101-197 7-98 (103)
18 3vou_A ION transport 2 domain 99.5 5.8E-15 2E-19 141.5 4.5 78 101-190 26-103 (148)
19 4h33_A LMO2059 protein; bilaye 99.5 3.8E-15 1.3E-19 140.6 2.3 76 677-762 20-97 (137)
20 2ih3_C Voltage-gated potassium 99.5 2.4E-14 8.4E-19 132.3 5.6 82 104-197 31-119 (122)
21 2a9h_A Voltage-gated potassium 99.5 1.3E-14 4.6E-19 139.4 2.3 82 102-195 52-140 (155)
22 4h33_A LMO2059 protein; bilaye 99.4 1.4E-14 4.8E-19 136.7 1.1 75 108-194 24-98 (137)
23 3pjs_K KCSA, voltage-gated pot 99.4 1.1E-15 3.8E-20 149.3 -7.9 78 675-762 37-121 (166)
24 3pjs_K KCSA, voltage-gated pot 99.3 2.3E-14 8E-19 139.9 -4.9 80 514-607 37-123 (166)
25 1orq_C Potassium channel; volt 99.3 8.7E-13 3E-17 135.1 6.3 83 673-765 133-222 (223)
26 1orq_C Potassium channel; volt 99.2 2.4E-12 8.1E-17 131.9 4.4 79 105-195 136-221 (223)
27 1lnq_A MTHK channels, potassiu 99.2 8.4E-14 2.9E-18 151.7 -7.8 80 675-764 22-101 (336)
28 4gx0_A TRKA domain protein; me 99.2 1.8E-11 6E-16 142.7 7.4 86 668-763 15-107 (565)
29 3beh_A MLL3241 protein; transm 99.2 2.7E-11 9.3E-16 132.8 8.0 87 671-767 127-220 (355)
30 1xl4_A Inward rectifier potass 99.1 3E-11 1E-15 128.6 6.2 76 678-763 55-137 (301)
31 1lnq_A MTHK channels, potassiu 99.1 3.1E-12 1.1E-16 139.3 -5.2 79 105-195 23-101 (336)
32 1p7b_A Integral membrane chann 99.1 1.4E-10 4.8E-15 124.7 7.0 78 676-763 67-151 (333)
33 2qks_A KIR3.1-prokaryotic KIR 99.0 1.4E-10 4.7E-15 124.4 6.2 58 696-763 76-133 (321)
34 2r9r_B Paddle chimera voltage 98.9 4.5E-10 1.5E-14 128.7 5.4 73 112-197 354-433 (514)
35 3beh_A MLL3241 protein; transm 98.9 6.8E-10 2.3E-14 121.6 5.8 81 105-197 132-219 (355)
36 4gx0_A TRKA domain protein; me 98.9 7E-10 2.4E-14 129.2 6.1 78 105-194 23-107 (565)
37 2r9r_B Paddle chimera voltage 98.9 1.3E-09 4.6E-14 124.8 6.5 74 682-766 353-433 (514)
38 1xl4_A Inward rectifier potass 98.9 1.1E-09 3.9E-14 116.4 4.8 66 116-193 64-136 (301)
39 1p7b_A Integral membrane chann 98.8 1.9E-09 6.6E-14 115.9 5.5 71 113-195 75-152 (333)
40 2qks_A KIR3.1-prokaryotic KIR 98.8 2.3E-09 7.8E-14 114.9 4.9 58 125-194 76-133 (321)
41 3sya_A G protein-activated inw 98.7 1.1E-08 3.8E-13 109.7 5.9 80 674-763 47-148 (340)
42 3spc_A Inward-rectifier K+ cha 98.6 3.1E-08 1E-12 106.4 6.2 80 674-763 49-151 (343)
43 3sya_A G protein-activated inw 98.3 7.2E-07 2.5E-11 95.7 7.2 59 127-195 91-149 (340)
44 3spc_A Inward-rectifier K+ cha 98.1 2.7E-06 9.3E-11 91.3 5.8 58 127-194 94-151 (343)
45 3rvy_A ION transport protein; 98.0 5.2E-06 1.8E-10 87.8 5.3 65 697-767 179-245 (285)
46 3rvy_A ION transport protein; 97.7 6.8E-06 2.3E-10 86.9 0.5 63 127-197 180-244 (285)
47 4dxw_A Navrh, ION transport pr 91.6 0.15 5.2E-06 51.3 5.0 62 697-763 164-225 (229)
48 3kg2_A Glutamate receptor 2; I 86.9 0.53 1.8E-05 56.4 5.6 54 699-763 564-617 (823)
49 4dxw_A Navrh, ION transport pr 80.9 0.72 2.5E-05 46.3 2.7 63 125-194 162-225 (229)
50 3pjz_A Potassium uptake protei 75.8 0.49 1.7E-05 53.3 -0.4 64 672-746 398-467 (494)
51 3kg2_A Glutamate receptor 2; I 70.8 2.6 8.8E-05 50.4 4.2 54 128-194 564-617 (823)
52 3pjz_A Potassium uptake protei 36.0 30 0.001 38.8 4.8 84 668-757 65-150 (494)
53 4f4l_A ION transport protein; 20.6 65 0.0022 28.1 3.2 31 736-766 72-102 (112)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.97 E-value=8.2e-33 Score=293.20 Aligned_cols=229 Identities=23% Similarity=0.323 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhccceeeeccccccccCCCCCccc------cchhhchhchHHHHHHHHHh----------------hhh
Q psy17959 274 LCLMIMVGYIYGGAVLFSKWEDWNILDGSRSSSRS------RSRQQTERSFTEKCKDYLRQ----------------FLA 331 (790)
Q Consensus 274 ~~~~~~v~y~~~Ga~iF~~~E~~~~~~~~~~~~~~------~~~~~~~~~~~e~~~~~~~~----------------~~~ 331 (790)
.+++.+++|+++||++|+++|+++|.+.+++-... +..+.++.++.+-.+..... ...
T Consensus 34 ~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~~~~ 113 (309)
T 3um7_A 34 ALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSSHSA 113 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC-----C
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCCCCC
Confidence 35666788999999999999999987764221111 11112233333222222211 134
Q ss_pred hhccccceeeeEEEEEeecccccccccCCcceehhhHHHHhHHHHHHHHHHhhHHHHHHhHHHHhhccccccCCCCCccc
Q psy17959 332 FLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFKWIYAKCCLCRGCPTRPRDL 411 (790)
Q Consensus 332 ~~f~~~~~~~~~~~~ttiGyg~~~p~t~~g~~~~i~y~~~gipl~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 411 (790)
|+|.++++|+.+ .+|||||||++|.|..||+||++|+++|||++.++++.+++.+.+.+++...+...+..
T Consensus 114 w~~~~a~yf~~~-t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~-------- 184 (309)
T 3um7_A 114 WDLGSAFFFSGT-IITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFL-------- 184 (309)
T ss_dssp CSHHHHHHHHHH-HHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHT--------
T ss_pred CChhhhhHhhhe-eeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh--------
Confidence 999999988775 45999999999999999999999999999999999999999998877655433211100
Q ss_pred cchhccccccccccccccccccccccccCCCCCccCCCCCCCccccCCchhhhhhhchhhhhhhhhhhhhhHhhhhcccc
Q psy17959 412 QKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491 (790)
Q Consensus 412 ~k~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ee~~~~~e~e~e~~~e~ee~~e~e~e~~ee~ 491 (790)
+++..
T Consensus 185 ------------~~~~~--------------------------------------------------------------- 189 (309)
T 3um7_A 185 ------------KWHVP--------------------------------------------------------------- 189 (309)
T ss_dssp ------------TTC-----------------------------------------------------------------
T ss_pred ------------ccccc---------------------------------------------------------------
Confidence 00000
Q ss_pred cccccCCCCCCCCCceeeehHHHHHHHHHHhhhhhceeeecccccCcccceeEEEEeecccccCCCccCCCcCCCCCCcc
Q psy17959 492 ETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIG 571 (790)
Q Consensus 492 ~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~ga~~f~~~e~w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~ 571 (790)
.........+.+.++.+++++++|+++|+..|+|+|.||+|||++|+|||||||++|.++.++
T Consensus 190 -----------~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~------ 252 (309)
T 3um7_A 190 -----------PELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ------ 252 (309)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC------
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc------
Confidence 000001112334455667889999999999999999999999999999999999999988776
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 572 VQTLELSFILCAMYLMLGMALIAMCFNLMQEEVV 605 (790)
Q Consensus 572 ~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~ 605 (790)
..+.|++++++|+++|+++++++++.+.+.+.
T Consensus 253 --~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 253 --DSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp --CCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23468899999999999999999998766544
No 2
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.97 E-value=3.4e-33 Score=291.84 Aligned_cols=235 Identities=26% Similarity=0.374 Sum_probs=167.2
Q ss_pred EehhHHHHHHHHHHHhhccceeeeccccccccCCCCCccccc------hhhchhchHHHHHHHHH-------------hh
Q psy17959 269 TVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGSRSSSRSRS------RQQTERSFTEKCKDYLR-------------QF 329 (790)
Q Consensus 269 ~l~~~~~~~~~v~y~~~Ga~iF~~~E~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~~~~-------------~~ 329 (790)
...+..+++.+++|+++||++|+++|+++|.+.+++-...+. .+.+++++.+-.++..+ ..
T Consensus 10 ~~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~ 89 (280)
T 3ukm_A 10 ATMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGN 89 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 344666777788999999999999999998876422211111 11222333333332221 22
Q ss_pred hhhhccccceeeeEEEEEeecccccccccCCcceehhhHHHHhHHHHHHHHHHhhHHHHHHhHHHHhhccccccCCCCCc
Q psy17959 330 LAFLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFKWIYAKCCLCRGCPTRPR 409 (790)
Q Consensus 330 ~~~~f~~~~~~~~~~~~ttiGyg~~~p~t~~g~~~~i~y~~~gipl~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 409 (790)
..|+|.++.+|+.++ +|||||||++|.|..||+++++|+++|||++.++++.+++.+.....+. .. +.
T Consensus 90 ~~w~~~~a~yf~~~t-~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~---~~--~~------ 157 (280)
T 3ukm_A 90 WNWDFTSALFFASTV-LSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRR---PV--LY------ 157 (280)
T ss_dssp CCSSHHHHHHHHHHH-HTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST---TT--TT------
T ss_pred CCCChhcchhheeee-eeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HH------
Confidence 359999999888754 5999999999999999999999999999999999999998775543110 00 00
Q ss_pred cccchhccccccccccccccccccccccccCCCCCccCCCCCCCccccCCchhhhhhhchhhhhhhhhhhhhhHhhhhcc
Q psy17959 410 DLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489 (790)
Q Consensus 410 ~~~k~i~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ee~~~~~e~e~e~~~e~ee~~e~e~e~~e 489 (790)
. +++ +.. + . ..
T Consensus 158 -----~--------~~~---------~~~----~-------~-----------~~------------------------- 168 (280)
T 3ukm_A 158 -----F--------HIR---------WGF----S-------K-----------QV------------------------- 168 (280)
T ss_dssp -----C---------------------------C-------C-----------HH-------------------------
T ss_pred -----H--------HHH---------hcC----C-------h-----------hH-------------------------
Confidence 0 000 000 0 0 00
Q ss_pred cccccccCCCCCCCCCceeeehHHHHHHHHHHhhhhhceeeeccc-ccCcccceeEEEEeecccccCCCccCCCcCCCCC
Q psy17959 490 EEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLFSKWE-DWNILDGSYFCFISLSTIGFGDIVPGDKITGKNN 568 (790)
Q Consensus 490 e~~~~~~~s~~~~~~~~~~~~~~~~~l~~~~~~i~~ga~~f~~~e-~w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~ 568 (790)
......+.+.++++++++++|+++|+..| +|+|.||+|||++|+|||||||++|.++.++
T Consensus 169 ----------------~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~--- 229 (280)
T 3ukm_A 169 ----------------VAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ--- 229 (280)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSC---
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCccc---
Confidence 00011234556677789999999999999 8999999999999999999999999988764
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 569 DIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHK 607 (790)
Q Consensus 569 ~~~~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~~~ 607 (790)
+...++++++++|+++|+++++++++.+.+....+
T Consensus 230 ----~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~ 264 (280)
T 3ukm_A 230 ----KFRELYKIGITCYLLLGLIAMLVVLETFCELHELK 264 (280)
T ss_dssp ----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred ----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999988766544
No 3
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.96 E-value=8e-31 Score=277.98 Aligned_cols=173 Identities=18% Similarity=0.414 Sum_probs=136.6
Q ss_pred ccCcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy17959 535 DWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEV 614 (790)
Q Consensus 535 ~w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 614 (790)
+|+|.||+||+++|+|||||||++|.+..|| +++++|+++|+++++++++.+.+.+.+..++...+
T Consensus 113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk--------------~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~ 178 (309)
T 3um7_A 113 AWDLGSAFFFSGTIITTIGYGNVALRTDAGR--------------LFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGH 178 (309)
T ss_dssp CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCChhhhhHhhheeeeecccCCCCCCCccch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4999999999999999999999999998876 99999999999999999999988887765443322
Q ss_pred HHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17959 615 TQRKSKQQQQQQNSLPNIYSQFNHISTGKYDGKTTPYRGGYCTHASDFEPKAFRFRVPIAVSFLIIISFILLGSLIFNKL 694 (790)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 694 (790)
.++.. ... + ..+...+....+...++.+++++++|+++|+..
T Consensus 179 le~~~----------~~~-------------------------~---~~~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~ 220 (309)
T 3um7_A 179 IEAIF----------LKW-------------------------H---VPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYM 220 (309)
T ss_dssp HHHHH----------TTT-------------------------C-----CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHH----------hcc-------------------------c---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22110 000 0 000111222233444556677889999999999
Q ss_pred cCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 695 ENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 695 e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
|+|+|+||+|||++|+|||||||++|.+..||. ....++++++++++|++++++.++.+++.+..
T Consensus 221 E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~----~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 221 EDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD----SPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp HCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCC----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHhheeccccCCCCCCCccccc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999983 23566799999999999999999998876654
No 4
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.96 E-value=5e-30 Score=267.93 Aligned_cols=172 Identities=23% Similarity=0.544 Sum_probs=134.8
Q ss_pred cccCcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-H
Q psy17959 534 EDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTC-S 612 (790)
Q Consensus 534 e~w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~il~Gl~~~~~~~~~~~~~~~~~~~~~-~ 612 (790)
|+|+|.||+||+++|+|||||||++|.++.|| +++++|+++|++++++.++.+.+.+.....+. .
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk--------------~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~ 155 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGK--------------AFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPV 155 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTT
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999998877 99999999999999999988887665543110 0
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Q psy17959 613 EVTQRKSKQQQQQQNSLPNIYSQFNHISTGKYDGKTTPYRGGYCTHASDFEPKAFRFRVPIAVSFLIIISFILLGSLIFN 692 (790)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 692 (790)
+.+++ + ....+.+......+.+.++++++++++|+++|+
T Consensus 156 ~~~~~----------------------------------~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~ga~~~~ 194 (280)
T 3ukm_A 156 LYFHI----------------------------------R-------WGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFS 194 (280)
T ss_dssp TTC-----------------------------------------------CCHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHH----------------------------------H-------hcCChhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 00000 0 000111112233445566777888899999999
Q ss_pred hhc-CCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 693 KLE-NWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 693 ~~e-~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
..| +|+|+||+|||++|+|||||||++|.++.||.+ ....+++++++|++|++++++.++.+++.+..
T Consensus 195 ~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~---~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 195 VLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKF---RELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHhcCCchhhhhhheeeeeecccCCCCCCCCCccccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999999999988532 23456999999999999999999999987664
No 5
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.67 E-value=5.2e-17 Score=145.79 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-------CccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHH
Q psy17959 671 VPIAVSFLIIISFILLGSLIFNKLENW-------TFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYI 743 (790)
Q Consensus 671 ~~~~~~~~~~~~~~~~g~~~~~~~e~~-------s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~ 743 (790)
+.+..+++++++++++++.+|+..|+| +|.||+||+++|+|||||||++|.++.|| +++++++
T Consensus 6 r~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr----------~~~~~~~ 75 (103)
T 2k1e_A 6 REAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGR----------KVAEQVM 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCT----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHH----------HHHHHHH
Confidence 345566777888889999999999987 99999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 744 LVGMAVISMCFNLIQEEIIFMIKKFT 769 (790)
Q Consensus 744 ~~g~~~~~~~~~~i~~~~~~~~~~~~ 769 (790)
++|++++++.++.++..+.++.++..
T Consensus 76 l~G~~~~~~~~~~i~~~~~~~~~~~~ 101 (103)
T 2k1e_A 76 KAGIEVFALVTAALATDFVRREEERR 101 (103)
T ss_dssp HHHHHHHHHTHHHHHTTGGGHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998888666543
No 6
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.66 E-value=4.8e-17 Score=139.61 Aligned_cols=78 Identities=17% Similarity=0.454 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q psy17959 674 AVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMC 753 (790)
Q Consensus 674 ~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~ 753 (790)
...++++++++++|+++|+..|+|++.||+||+++|+|||||||++|.|+.|| ++++++++.|++++++.
T Consensus 4 ~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r----------~~~~~~~~~G~~~~~~~ 73 (82)
T 3ldc_A 4 TRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGM----------YFTCTLIVLGIGTFAVA 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHH----------HHHHHHHHHHHHHHHHH
Confidence 44566677788899999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHH
Q psy17959 754 FNLIQEEI 761 (790)
Q Consensus 754 ~~~i~~~~ 761 (790)
++.+++.+
T Consensus 74 ~~~i~~~l 81 (82)
T 3ldc_A 74 VERLLEFL 81 (82)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 7
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.63 E-value=2e-16 Score=140.18 Aligned_cols=82 Identities=18% Similarity=0.528 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHH
Q psy17959 672 PIAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVIS 751 (790)
Q Consensus 672 ~~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~ 751 (790)
.+...++++++++++|+++|+..|+|++.||+||+++|+|||||||++|.++.|| +++++++++|+++++
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr----------~~~~~~~~~G~~~~~ 75 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGK----------IFTILYIFIGIGLVF 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHH----------HHHHHHHHHHHHHHH
Confidence 4556677777888899999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17959 752 MCFNLIQEEIIF 763 (790)
Q Consensus 752 ~~~~~i~~~~~~ 763 (790)
+.++.+++.+..
T Consensus 76 ~~i~~i~~~~~~ 87 (97)
T 3ouf_A 76 GFIHKLAVNVQL 87 (97)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHHhH
Confidence 999999987764
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.62 E-value=2.1e-16 Score=149.96 Aligned_cols=88 Identities=16% Similarity=0.311 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHH
Q psy17959 670 RVPIAVSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSY 742 (790)
Q Consensus 670 ~~~~~~~~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~ 742 (790)
.+.+..+++++++++++++.+++..|+ |+|+||+||+++|+|||||||++|.|+.|| ++++++
T Consensus 5 ~r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r----------~~~~~~ 74 (139)
T 3eff_K 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR----------LVAVVV 74 (139)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHH----------HHHHHH
Confidence 345667777888889999999999998 999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 743 ILVGMAVISMCFNLIQEEIIFMIKK 767 (790)
Q Consensus 743 ~~~g~~~~~~~~~~i~~~~~~~~~~ 767 (790)
+++|++++++.++.++..+.+..++
T Consensus 75 ~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 75 MVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp HHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776654443
No 9
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.61 E-value=2.8e-16 Score=143.52 Aligned_cols=80 Identities=19% Similarity=0.497 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISM 752 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~ 752 (790)
+...++++++++++|+++|+..|+|++.||+||+++|+|||||||++|.|+.|| +++++++++|++++++
T Consensus 24 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr----------~~~~~~~~~G~~~~~~ 93 (114)
T 2q67_A 24 FQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGK----------IFTILYIFIGIGLVFG 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHH----------HHHHHHHHHHHHHHHH
Confidence 345566677778889999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHH
Q psy17959 753 CFNLIQEEII 762 (790)
Q Consensus 753 ~~~~i~~~~~ 762 (790)
.++.+++.+.
T Consensus 94 ~~~~l~~~~~ 103 (114)
T 2q67_A 94 FIHKLAVNVQ 103 (114)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999997763
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.57 E-value=2e-15 Score=139.70 Aligned_cols=84 Identities=15% Similarity=0.316 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHH
Q psy17959 674 AVSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVG 746 (790)
Q Consensus 674 ~~~~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g 746 (790)
..++..+++++++++.+++..|+ |++.||+||+++|+|||||||++|.|+.|| +++++++++|
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr----------~~~~~~~~~G 99 (122)
T 2ih3_C 30 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGR----------LVAVVVMVAG 99 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHH----------HHHHHHHHHH
Confidence 34455666777889999999997 999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17959 747 MAVISMCFNLIQEEIIFMIKK 767 (790)
Q Consensus 747 ~~~~~~~~~~i~~~~~~~~~~ 767 (790)
++++++.++.+++.+.+..++
T Consensus 100 i~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 100 ITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999886654
No 11
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.57 E-value=9.2e-16 Score=131.57 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy17959 102 IWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALL 181 (790)
Q Consensus 102 ~~~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~ 181 (790)
....+.+++.+++.|+++|+..|+|+|.||+||+++|+|||||||++|.++. +|.++.+++++|+.++
T Consensus 3 ~~~~~~l~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~------------~r~~~~~~~~~G~~~~ 70 (82)
T 3ldc_A 3 ATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPL------------GMYFTCTLIVLGIGTF 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCcc------------HHHHHHHHHHHHHHHH
Confidence 3455666677889999999999999999999999999999999999998764 8999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17959 182 AMSFNLVQEEV 192 (790)
Q Consensus 182 ~~~i~~i~~~~ 192 (790)
+++++.+.+.+
T Consensus 71 ~~~~~~i~~~l 81 (82)
T 3ldc_A 71 AVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.56 E-value=3.1e-15 Score=143.40 Aligned_cols=77 Identities=19% Similarity=0.468 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISM 752 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~ 752 (790)
+...++++++++++|+++|+..|+|+|.||+|||++|+|||||||++|.|+.|| +++++++++|++++++
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r----------~~~~~~~~~g~~~~~~ 96 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGK----------VFTILYIFIGIGLVFG 96 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHH----------HHHHHHHHHHHHHHHH
Confidence 455666777788899999999999999999999999999999999999999999 8999999999999999
Q ss_pred HHHHHHH
Q psy17959 753 CFNLIQE 759 (790)
Q Consensus 753 ~~~~i~~ 759 (790)
.++.++.
T Consensus 97 ~~~~~~~ 103 (148)
T 3vou_A 97 FIHKLAV 103 (148)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9999875
No 13
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.56 E-value=1.8e-15 Score=133.98 Aligned_cols=82 Identities=29% Similarity=0.455 Sum_probs=73.3
Q ss_pred hhhhHHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHH
Q psy17959 100 VPIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIA 179 (790)
Q Consensus 100 ~~~~~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~ 179 (790)
.++...+++++++++.|+++|+..|+|+|.||+||+++|+|||||||++|.+.. +|+++.+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~------------gr~~~~~~~~~G~~ 72 (97)
T 3ouf_A 5 KEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDF------------GKIFTILYIFIGIG 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCcc------------HHHHHHHHHHHHHH
Confidence 455566677778889999999999999999999999999999999999998764 89999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy17959 180 LLAMSFNLVQEEVI 193 (790)
Q Consensus 180 ~~~~~i~~i~~~~~ 193 (790)
+++++++.+...+.
T Consensus 73 ~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 73 LVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887665
No 14
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.55 E-value=1.4e-15 Score=146.34 Aligned_cols=83 Identities=17% Similarity=0.358 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCC-------CccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHH
Q psy17959 674 AVSFLIIISFILLGSLIFNKLENW-------TFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVG 746 (790)
Q Consensus 674 ~~~~~~~~~~~~~g~~~~~~~e~~-------s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g 746 (790)
...++++++++++++++|+..|+| ++.||+||+++|+|||||||++|.|+.|| +++++++++|
T Consensus 53 ~~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr----------~~~~~~~l~G 122 (155)
T 2a9h_A 53 GAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGR----------CVAVVVMVAG 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHH----------HHHHHHHHHH
Confidence 344555667778899999999987 89999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17959 747 MAVISMCFNLIQEEIIFMIK 766 (790)
Q Consensus 747 ~~~~~~~~~~i~~~~~~~~~ 766 (790)
++++++.++.++..+.++.+
T Consensus 123 v~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 123 ITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886443
No 15
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.55 E-value=2.5e-15 Score=142.52 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHhHHhhcccC-------CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHH
Q psy17959 102 IWLCVFLVISYIIGGAFLFSHWEP-------WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYL 174 (790)
Q Consensus 102 ~~~~~~~~~~~i~~ga~~~~~~e~-------wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (790)
+...+++++++++++++++...|+ |+|.||+||+++|+|||||||++|.+.. +++++++++
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~------------~r~~~~~~~ 75 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLW------------GRLVAVVVM 75 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcC------------HHHHHHHHH
Confidence 344566677788899999999997 9999999999999999999999998765 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 175 LFGIALLAMSFNLVQEEVISNVKAI 199 (790)
Q Consensus 175 l~Gl~~~~~~i~~i~~~~~~~~~~~ 199 (790)
++|+++++++++.+.+.+.+..++.
T Consensus 76 ~~G~~~~~~~~~~i~~~~~~~~~~~ 100 (139)
T 3eff_K 76 VAGITSFGLVTAALATWFVGREQER 100 (139)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877765543
No 16
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.53 E-value=2.7e-15 Score=136.98 Aligned_cols=80 Identities=29% Similarity=0.440 Sum_probs=71.0
Q ss_pred hhhHHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHH
Q psy17959 101 PIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIAL 180 (790)
Q Consensus 101 ~~~~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~ 180 (790)
++...+++++++++.|+++|+..|+|+|.||+||+++|+|||||||++|.++. +++++.+++++|+++
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~------------gr~~~~~~~~~G~~~ 90 (114)
T 2q67_A 23 EFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDF------------GKIFTILYIFIGIGL 90 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHH------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHh------------HHHHHHHHHHHHHHH
Confidence 34455666677888999999999999999999999999999999999998765 899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17959 181 LAMSFNLVQEEV 192 (790)
Q Consensus 181 ~~~~i~~i~~~~ 192 (790)
++++++.+.+.+
T Consensus 91 ~~~~~~~l~~~~ 102 (114)
T 2q67_A 91 VFGFIHKLAVNV 102 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 17
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.53 E-value=2.7e-15 Score=134.59 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHHHHhHHhhcccCC-------CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHH
Q psy17959 101 PIWLCVFLVISYIIGGAFLFSHWEPW-------GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLY 173 (790)
Q Consensus 101 ~~~~~~~~~~~~i~~ga~~~~~~e~w-------sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~ 173 (790)
++...++++++++++++.+|+..|+| +|.||+||+++|+|||||||++|.+.. +|++++++
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~------------gr~~~~~~ 74 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEE------------GRKVAEQV 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSS------------CTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChh------------HHHHHHHH
Confidence 44455666777888999999999987 899999999999999999999999876 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 174 LLFGIALLAMSFNLVQEEVISNVK 197 (790)
Q Consensus 174 ~l~Gl~~~~~~i~~i~~~~~~~~~ 197 (790)
+++|+.+++++++.+.+.+.++.+
T Consensus 75 ~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 75 MKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp HHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887776544
No 18
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.51 E-value=5.8e-15 Score=141.49 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHH
Q psy17959 101 PIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIAL 180 (790)
Q Consensus 101 ~~~~~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~ 180 (790)
++.+.+++++++++.|+++|...|+|+|.||+|||++|+|||||||++|.++. +++++++++++|+++
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~------------~r~~~~~~~~~g~~~ 93 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDF------------GKVFTILYIFIGIGL 93 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHH------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCcc------------HHHHHHHHHHHHHHH
Confidence 44555666777889999999999999999999999999999999999998754 899999999999999
Q ss_pred HHHHHHHHHH
Q psy17959 181 LAMSFNLVQE 190 (790)
Q Consensus 181 ~~~~i~~i~~ 190 (790)
++++++.+..
T Consensus 94 ~~~~~~~~~~ 103 (148)
T 3vou_A 94 VFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988775
No 19
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.50 E-value=3.8e-15 Score=140.57 Aligned_cols=76 Identities=20% Similarity=0.430 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhhhhc--CCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q psy17959 677 FLIIISFILLGSLIFNKLE--NWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCF 754 (790)
Q Consensus 677 ~~~~~~~~~~g~~~~~~~e--~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 754 (790)
++++++++++++..+++.| .|+|+||+|||++|+|||||||++|.|+.|| +++++++++|++++++.+
T Consensus 20 l~~~~~~~~~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr----------~~~~~~~~~g~~~~~~~~ 89 (137)
T 4h33_A 20 LMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGR----------ILASIMMLFGIAFIGMIT 89 (137)
T ss_dssp HHHHHHHHHHTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHH----------HHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555 5999999999999999999999999999999 899999999999999999
Q ss_pred HHHHHHHH
Q psy17959 755 NLIQEEII 762 (790)
Q Consensus 755 ~~i~~~~~ 762 (790)
+.++..+.
T Consensus 90 ~~i~~~~~ 97 (137)
T 4h33_A 90 STITNFFR 97 (137)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHH
Confidence 99997765
No 20
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.47 E-value=2.4e-14 Score=132.34 Aligned_cols=82 Identities=16% Similarity=0.310 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhHHhhcccC-------CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHH
Q psy17959 104 LCVFLVISYIIGGAFLFSHWEP-------WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLF 176 (790)
Q Consensus 104 ~~~~~~~~~i~~ga~~~~~~e~-------wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (790)
..++.+++++++++.+++..|+ |+|.||+||+++|+|||||||++|.++. +++++.+++++
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~------------gr~~~~~~~~~ 98 (122)
T 2ih3_C 31 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLW------------GRLVAVVVMVA 98 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCcc------------HHHHHHHHHHH
Confidence 3444555677888898988886 9999999999999999999999998765 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17959 177 GIALLAMSFNLVQEEVISNVK 197 (790)
Q Consensus 177 Gl~~~~~~i~~i~~~~~~~~~ 197 (790)
|+.+++++++.+.+.+.+..+
T Consensus 99 Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 99 GITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998887654
No 21
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.45 E-value=1.3e-14 Score=139.43 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHhHHhhcccCC-------CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHH
Q psy17959 102 IWLCVFLVISYIIGGAFLFSHWEPW-------GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYL 174 (790)
Q Consensus 102 ~~~~~~~~~~~i~~ga~~~~~~e~w-------sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (790)
....+++++++++++|++++..|+| +|.||+||+++|+|||||||++|.+.. +++++++++
T Consensus 52 ~~~~~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~------------gr~~~~~~~ 119 (155)
T 2a9h_A 52 AGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLW------------GRCVAVVVM 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChh------------HHHHHHHHH
Confidence 3344555667788999999999987 899999999999999999999998765 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17959 175 LFGIALLAMSFNLVQEEVISN 195 (790)
Q Consensus 175 l~Gl~~~~~~i~~i~~~~~~~ 195 (790)
++|+++++++++.+.+.+.+.
T Consensus 120 l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 120 VAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887764
No 22
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.43 E-value=1.4e-14 Score=136.70 Aligned_cols=75 Identities=29% Similarity=0.519 Sum_probs=61.3
Q ss_pred HHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy17959 108 LVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNL 187 (790)
Q Consensus 108 ~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~ 187 (790)
+++++++.++..+...|.|+|.||+||+++|+|||||||++|.+.. +++++++++++|+++++++++.
T Consensus 24 ~~~~~~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~------------gr~~~~~~~~~g~~~~~~~~~~ 91 (137)
T 4h33_A 24 VLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPI------------GRILASIMMLFGIAFIGMITST 91 (137)
T ss_dssp HHHHHHTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555679999999999999999999999998765 8999999999999999999998
Q ss_pred HHHHHHH
Q psy17959 188 VQEEVIS 194 (790)
Q Consensus 188 i~~~~~~ 194 (790)
+.+.+.+
T Consensus 92 i~~~~~~ 98 (137)
T 4h33_A 92 ITNFFRC 98 (137)
T ss_dssp HHTTTTT
T ss_pred HHHHHHH
Confidence 8876543
No 23
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.42 E-value=1.1e-15 Score=149.32 Aligned_cols=78 Identities=18% Similarity=0.395 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHH
Q psy17959 675 VSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGM 747 (790)
Q Consensus 675 ~~~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~ 747 (790)
..++++++++++++++++..|+ |+|+||+|||++|+|||||||++|.|+.|| +++++++++|+
T Consensus 37 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r----------~~~~~~~l~G~ 106 (166)
T 3pjs_K 37 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR----------LVAVVVMVAGI 106 (166)
T ss_dssp TTSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTT----------TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHH----------HHHHHHHHHHH
Confidence 3444566777889999999998 999999999999999999999999999999 88999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17959 748 AVISMCFNLIQEEII 762 (790)
Q Consensus 748 ~~~~~~~~~i~~~~~ 762 (790)
+++++.++.++..+.
T Consensus 107 ~~~~~~~~~i~~~~~ 121 (166)
T 3pjs_K 107 TSFGLVTAALATWFV 121 (166)
T ss_dssp HHHHHHHTTSSSSSS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999975544
No 24
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.33 E-value=2.3e-14 Score=139.89 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhhhceeeecccc-------cCcccceeEEEEeecccccCCCccCCCcCCCCCCcccchhhhHHHHHHHHH
Q psy17959 514 LCLMIMVGYIYGGAVLFSKWED-------WNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQTLELSFILCAMYL 586 (790)
Q Consensus 514 ~~l~~~~~~i~~ga~~f~~~e~-------w~~~da~Yf~~itltTIGfGD~~P~~~~~~~~~~~~~~~~~~~~~~~~~~i 586 (790)
..++++++++++++.+|...|+ |+|.||+||+++|+|||||||++|.+..++ +++++++
T Consensus 37 ~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r--------------~~~~~~~ 102 (166)
T 3pjs_K 37 AATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGR--------------LVAVVVM 102 (166)
T ss_dssp TTSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTT--------------TTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHH--------------HHHHHHH
Confidence 3344556788889999999998 999999999999999999999999998887 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17959 587 MLGMALIAMCFNLMQEEVVHK 607 (790)
Q Consensus 587 l~Gl~~~~~~~~~~~~~~~~~ 607 (790)
++|+++++++++.+.+.+.+.
T Consensus 103 l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 103 VAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp HHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876665543
No 25
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.33 E-value=8.7e-13 Score=135.15 Aligned_cols=83 Identities=13% Similarity=0.393 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHH
Q psy17959 673 IAVSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILV 745 (790)
Q Consensus 673 ~~~~~~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~ 745 (790)
+...+..+++++.+++.+++..|+ |++.||+||+++|+|||||||++|.|+.|| ++++++++.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~----------~~~~~~~~~ 202 (223)
T 1orq_C 133 FYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGK----------VIGIAVMLT 202 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHH----------HHHHHHHHH
Confidence 444555666777889999999998 999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17959 746 GMAVISMCFNLIQEEIIFMI 765 (790)
Q Consensus 746 g~~~~~~~~~~i~~~~~~~~ 765 (790)
|++++++.++.+++.+.++.
T Consensus 203 G~~~~~~~i~~i~~~~~~~~ 222 (223)
T 1orq_C 203 GISALTLLIGTVSNMFQKIL 222 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999888754
No 26
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.25 E-value=2.4e-12 Score=131.88 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhHHhhcccC-------CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHH
Q psy17959 105 CVFLVISYIIGGAFLFSHWEP-------WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFG 177 (790)
Q Consensus 105 ~~~~~~~~i~~ga~~~~~~e~-------wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~G 177 (790)
.+.++++++.++|.+++..|+ |+|.||+||+++|+|||||||++|.++. +++++.+++++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~------------~~~~~~~~~~~G 203 (223)
T 1orq_C 136 LFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPI------------GKVIGIAVMLTG 203 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHh------------HHHHHHHHHHHH
Confidence 444455667778888888887 9999999999999999999999998654 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17959 178 IALLAMSFNLVQEEVISN 195 (790)
Q Consensus 178 l~~~~~~i~~i~~~~~~~ 195 (790)
+++++++++.+.+.+.++
T Consensus 204 ~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 204 ISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887764
No 27
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.23 E-value=8.4e-14 Score=151.71 Aligned_cols=80 Identities=18% Similarity=0.440 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q psy17959 675 VSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCF 754 (790)
Q Consensus 675 ~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 754 (790)
..++++++++++|+++|+..|+|+|+||+||+++|+|||||||++|.|+.|| +|+++++++|++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r----------~~~~~~~~~g~~~~~~~~ 91 (336)
T 1lnq_A 22 RILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGM----------YFTVTLIVLGIGTFAVAV 91 (336)
T ss_dssp SSTTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHH----------HHHTHHHHTTSTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHH----------HHHHHHHHHHHHHHHHHH
Confidence 3444556677889999999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHH
Q psy17959 755 NLIQEEIIFM 764 (790)
Q Consensus 755 ~~i~~~~~~~ 764 (790)
+.+++.+..+
T Consensus 92 ~~~~~~~~~~ 101 (336)
T 1lnq_A 92 ERLLEFLINR 101 (336)
T ss_dssp HHHTTTC---
T ss_pred HHHHHHHHHH
Confidence 9998877763
No 28
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.17 E-value=1.8e-11 Score=142.75 Aligned_cols=86 Identities=17% Similarity=0.360 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhh----hcC--CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHH
Q psy17959 668 RFRVPIAVSFLIIISFILLGSLIFNK----LEN--WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSS 741 (790)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~g~~~~~~----~e~--~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~ 741 (790)
+.++.+...++++++++++++++|+. .|+ |+|+||+||+++|+|||||||++|.|+.|| +|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~----------~~~~~ 84 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGY----------LFASI 84 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHH----------HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHH----------HHHHH
Confidence 33445566666677777778887776 566 999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHH
Q psy17959 742 YILVGMAVISMCFNL-IQEEIIF 763 (790)
Q Consensus 742 ~~~~g~~~~~~~~~~-i~~~~~~ 763 (790)
++++|++++++.++. +.+.+..
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 85 VTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 5554443
No 29
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.17 E-value=2.7e-11 Score=132.83 Aligned_cols=87 Identities=11% Similarity=0.268 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCC-------CccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHH
Q psy17959 671 VPIAVSFLIIISFILLGSLIFNKLENW-------TFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYI 743 (790)
Q Consensus 671 ~~~~~~~~~~~~~~~~g~~~~~~~e~~-------s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~ 743 (790)
..+...++++++++.++|.+++..|++ ++.||+||+++|+|||||||++|.|+.|| +++++++
T Consensus 127 ~~l~~~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~----------~~~~~~~ 196 (355)
T 3beh_A 127 RNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGR----------VLAGAVM 196 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHH----------HHHHHHH
Confidence 345555666677788899999999986 89999999999999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 744 LVGMAVISMCFNLIQEEIIFMIKK 767 (790)
Q Consensus 744 ~~g~~~~~~~~~~i~~~~~~~~~~ 767 (790)
++|++++++.++.+++.+.+..++
T Consensus 197 ~~g~~~~~~~~~~i~~~~~~~~~~ 220 (355)
T 3beh_A 197 MSGIGIFGLWAGILATGFYQEVRR 220 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876554
No 30
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.13 E-value=3e-11 Score=128.59 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhhhcC-------CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHH
Q psy17959 678 LIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVI 750 (790)
Q Consensus 678 ~~~~~~~~~g~~~~~~~e~-------~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~ 750 (790)
++.++.+++.|.+|+..++ ++|.||+||+++|+|||||||++|.++.|| +++++++++|++++
T Consensus 55 ~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr----------~~~~~~~l~G~~~~ 124 (301)
T 1xl4_A 55 GLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLAN----------TLVTLEALCGMLGL 124 (301)
T ss_dssp HHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHH----------HHHHHHHHHHHHHH
Confidence 3334454566666776652 899999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17959 751 SMCFNLIQEEIIF 763 (790)
Q Consensus 751 ~~~~~~i~~~~~~ 763 (790)
++.++.+...+.+
T Consensus 125 a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 125 AVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999988877654
No 31
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.07 E-value=3.1e-12 Score=139.27 Aligned_cols=79 Identities=27% Similarity=0.488 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhHHhhcccCCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy17959 105 CVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMS 184 (790)
Q Consensus 105 ~~~~~~~~i~~ga~~~~~~e~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~ 184 (790)
.++++++++++|+++|+..|+|+|.||+||+++|+|||||||++|.+.. +++++++++++|+++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~------------~r~~~~~~~~~g~~~~~~~ 90 (336)
T 1lnq_A 23 ILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPL------------GMYFTVTLIVLGIGTFAVA 90 (336)
T ss_dssp STTTTTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSS------------HHHHHTHHHHTTSTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcC------------HHHHHHHHHHHHHHHHHHH
Confidence 3444455678899999999999999999999999999999999999776 8999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy17959 185 FNLVQEEVISN 195 (790)
Q Consensus 185 i~~i~~~~~~~ 195 (790)
++.+.+.+.+.
T Consensus 91 ~~~~~~~~~~~ 101 (336)
T 1lnq_A 91 VERLLEFLINR 101 (336)
T ss_dssp HHHHTTTC---
T ss_pred HHHHHHHHHHH
Confidence 99988876664
No 32
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.05 E-value=1.4e-10 Score=124.72 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhhhc-------CCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHH
Q psy17959 676 SFLIIISFILLGSLIFNKLE-------NWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMA 748 (790)
Q Consensus 676 ~~~~~~~~~~~g~~~~~~~e-------~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~ 748 (790)
.++++++++++++++|+... .++|.||+||+++|+|||||||++|.++.|| +++++++++|++
T Consensus 67 ~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr----------~~~~~~~l~G~~ 136 (333)
T 1p7b_A 67 LAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAH----------AIATLEIFVGMS 136 (333)
T ss_dssp HHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHH----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHH----------HHHHHHHHHHHH
Confidence 33444556677777765421 2589999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy17959 749 VISMCFNLIQEEIIF 763 (790)
Q Consensus 749 ~~~~~~~~i~~~~~~ 763 (790)
++++.++.+...+.+
T Consensus 137 ~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 137 GIALSTGLVFARFAR 151 (333)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877664
No 33
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.04 E-value=1.4e-10 Score=124.38 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=54.3
Q ss_pred CCCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 696 NWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 696 ~~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
+|+|.||+||+++|+|||||||++|.+..|| +++++++++|++++++.++.+...+.+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr----------~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYAH----------WIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999 889999999999999999999977765
No 34
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.93 E-value=4.5e-10 Score=128.69 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=59.5
Q ss_pred HHHHHhHHhhcccCC-------CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy17959 112 YIIGGAFLFSHWEPW-------GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMS 184 (790)
Q Consensus 112 ~i~~ga~~~~~~e~w-------sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~ 184 (790)
.++.|+++| ..|++ +|.+|+||+++|+|||||||++|.+.. +++++++++++|+++++++
T Consensus 354 ~~if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~------------gr~f~~~~~l~G~~~l~l~ 420 (514)
T 2r9r_B 354 VILFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIG------------GKIVGSLCAIAGVLTIALP 420 (514)
T ss_dssp HHHHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHH------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcc------------hHhhehhHHHHHHHHHHHH
Confidence 334444444 44543 799999999999999999999998654 7899999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy17959 185 FNLVQEEVISNVK 197 (790)
Q Consensus 185 i~~i~~~~~~~~~ 197 (790)
++++.+.+.+..+
T Consensus 421 iavI~~~f~~~~~ 433 (514)
T 2r9r_B 421 VPVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999987776544
No 35
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.91 E-value=6.8e-10 Score=121.64 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhHHhhcccCC-------CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHH
Q psy17959 105 CVFLVISYIIGGAFLFSHWEPW-------GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFG 177 (790)
Q Consensus 105 ~~~~~~~~i~~ga~~~~~~e~w-------sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~G 177 (790)
.+.++++.++++|++++..|+| +|.||+||+++|+|||||||++|.+.. +++++.+++++|
T Consensus 132 ~~~~~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~------------~~~~~~~~~~~g 199 (355)
T 3beh_A 132 VTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFA------------GRVLAGAVMMSG 199 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChh------------HHHHHHHHHHHH
Confidence 3444455677788888888876 799999999999999999999998754 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17959 178 IALLAMSFNLVQEEVISNVK 197 (790)
Q Consensus 178 l~~~~~~i~~i~~~~~~~~~ 197 (790)
+++++++++.+.+.+.+..+
T Consensus 200 ~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 200 IGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877544
No 36
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.91 E-value=7e-10 Score=129.21 Aligned_cols=78 Identities=18% Similarity=0.376 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhHHhhc----ccC--CCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHH
Q psy17959 105 CVFLVISYIIGGAFLFSH----WEP--WGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGI 178 (790)
Q Consensus 105 ~~~~~~~~i~~ga~~~~~----~e~--wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl 178 (790)
.++++++++++++++|+. +|+ |+|+||+||+++|+|||||||++|.+.. +++++++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~------------~~~~~~~~~~~g~ 90 (565)
T 4gx0_A 23 YCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDA------------GYLFASIVTVSGV 90 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCcc------------HHHHHHHHHHHHH
Confidence 334444455566665554 566 9999999999999999999999998764 8999999999999
Q ss_pred HHHHHHHHH-HHHHHHH
Q psy17959 179 ALLAMSFNL-VQEEVIS 194 (790)
Q Consensus 179 ~~~~~~i~~-i~~~~~~ 194 (790)
++++++++. +.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 91 IFLDIILPFGFVSMFLA 107 (565)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999987 5554444
No 37
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.87 E-value=1.3e-09 Score=124.76 Aligned_cols=74 Identities=20% Similarity=0.395 Sum_probs=62.4
Q ss_pred HHHHHHHHhhhhhcCC-------CccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q psy17959 682 SFILLGSLIFNKLENW-------TFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCF 754 (790)
Q Consensus 682 ~~~~~g~~~~~~~e~~-------s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 754 (790)
++++.|+++ +..|++ ++.||+||+++|+|||||||+.|.+..|| +|+++++++|++++++.+
T Consensus 353 ~~~if~~~~-~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr----------~f~~~~~l~G~~~l~l~i 421 (514)
T 2r9r_B 353 GVILFSSAV-YFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGK----------IVGSLCAIAGVLTIALPV 421 (514)
T ss_dssp HHHHHHHHH-HHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHH----------HHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhhh-heeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchH----------hhehhHHHHHHHHHHHHH
Confidence 334444444 456764 89999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy17959 755 NLIQEEIIFMIK 766 (790)
Q Consensus 755 ~~i~~~~~~~~~ 766 (790)
+.+.+.+....+
T Consensus 422 avI~~~f~~~~~ 433 (514)
T 2r9r_B 422 PVIVSNFNYFYH 433 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988776544
No 38
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.85 E-value=1.1e-09 Score=116.40 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=56.0
Q ss_pred HhHHhhccc-------CCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 116 GAFLFSHWE-------PWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLV 188 (790)
Q Consensus 116 ga~~~~~~e-------~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i 188 (790)
.|.+|...+ .++|.||+||+++|+|||||||++|.+.. +++++.+.+++|+.+++++++.+
T Consensus 64 fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~------------gr~~~~~~~l~G~~~~a~~~g~v 131 (301)
T 1xl4_A 64 FALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPL------------ANTLVTLEALCGMLGLAVAASLI 131 (301)
T ss_dssp HHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344465554 28899999999999999999999997654 89999999999999999999988
Q ss_pred HHHHH
Q psy17959 189 QEEVI 193 (790)
Q Consensus 189 ~~~~~ 193 (790)
...+.
T Consensus 132 ~~~~~ 136 (301)
T 1xl4_A 132 YARFT 136 (301)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77664
No 39
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.83 E-value=1.9e-09 Score=115.88 Aligned_cols=71 Identities=28% Similarity=0.413 Sum_probs=58.6
Q ss_pred HHHHhHHhhccc-------CCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy17959 113 IIGGAFLFSHWE-------PWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSF 185 (790)
Q Consensus 113 i~~ga~~~~~~e-------~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i 185 (790)
++++|++|.... .++|.||+||+++|+|||||||++|.+.. +++++.+++++|+.++++++
T Consensus 75 ~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~------------gr~~~~~~~l~G~~~~a~~i 142 (333)
T 1p7b_A 75 NTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVY------------AHAIATLEIFVGMSGIALST 142 (333)
T ss_dssp HHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 345566654322 35899999999999999999999998654 89999999999999999999
Q ss_pred HHHHHHHHHH
Q psy17959 186 NLVQEEVISN 195 (790)
Q Consensus 186 ~~i~~~~~~~ 195 (790)
+.+...+.+.
T Consensus 143 g~i~~~~~~~ 152 (333)
T 1p7b_A 143 GLVFARFARP 152 (333)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHHH
Confidence 9988877643
No 40
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.80 E-value=2.3e-09 Score=114.91 Aligned_cols=58 Identities=24% Similarity=0.450 Sum_probs=52.8
Q ss_pred CCCCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 125 PWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 125 ~wsf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+|+|.||+||+++|+|||||||++|.+.. +++++.+++++|+++++++++.+...+.+
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~------------gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVY------------AHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999998654 89999999999999999999998877664
No 41
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.69 E-value=1.1e-08 Score=109.67 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-----c---------------CCCccchhhheeeeeeccccCCcccC--CCcccccccc
Q psy17959 674 AVSFLIIISFILLGSLIFNKL-----E---------------NWTFLDGTFFCFTSLGTIGFGELIPG--ESYDRTLRGN 731 (790)
Q Consensus 674 ~~~~~~~~~~~~~g~~~~~~~-----e---------------~~s~~da~Y~~~vt~tTVGyGD~~p~--t~~gr~~~~~ 731 (790)
.+.++..++.+++.|++|+.+ + .-++.||+||+++|+|||||||+.|. ++.|+
T Consensus 47 lif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~----- 121 (340)
T 3sya_A 47 LIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGI----- 121 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHH-----
Confidence 344444666677778777652 1 13899999999999999999999997 57788
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 732 KNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 732 ~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
+++++.+++|+.+++..++.+...+.+
T Consensus 122 -----~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 122 -----ILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 889999999999999999998876665
No 42
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.60 E-value=3.1e-08 Score=106.44 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh---c------------------CCCccchhhheeeeeeccccCCcccC--CCccccccc
Q psy17959 674 AVSFLIIISFILLGSLIFNKL---E------------------NWTFLDGTFFCFTSLGTIGFGELIPG--ESYDRTLRG 730 (790)
Q Consensus 674 ~~~~~~~~~~~~~g~~~~~~~---e------------------~~s~~da~Y~~~vt~tTVGyGD~~p~--t~~gr~~~~ 730 (790)
.+.++..++.+++.|++|+.+ + .-+|.||+||+++|+|||||||+.|. ++.|+
T Consensus 49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~---- 124 (343)
T 3spc_A 49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAV---- 124 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccCCHHHHhheeeeeeEeecCCCccCCCCCHHHH----
Confidence 344455677778888887652 1 14899999999999999999999975 78888
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 731 NKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 731 ~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
+++++.+++|+.+++..++.+...+.+
T Consensus 125 ------~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 125 ------FMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999988866554
No 43
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.30 E-value=7.2e-07 Score=95.70 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=51.4
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISN 195 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~ 195 (790)
+|.||+||+++|+|||||||+.|... ...+++++.+-+++|+.++|++++++...+.+-
T Consensus 91 sf~~af~fSv~T~TTvGYGd~~p~~~----------~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp 149 (340)
T 3sya_A 91 GFVSAFLFSIETETTIGYGYRVITDK----------CPEGIILLLIQSVLGSIVNAFMVGCMFVKISQP 149 (340)
T ss_dssp STTHHHHHHHHHHSCCCCSSSCBCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHhhhheeeeeecCCCccCcCc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 68999999999999999999999742 235889999999999999999999888776653
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.07 E-value=2.7e-06 Score=91.32 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=49.8
Q ss_pred CCccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+|.||+||+++|+|||||||+.|... ...+++++.+-+++|+.++|.+++++..++.+
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~----------~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEE----------CPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSS----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHhheeeeeeEeecCCCccCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998632 23478899999999999999999988877654
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.95 E-value=5.2e-06 Score=87.79 Aligned_cols=65 Identities=11% Similarity=0.153 Sum_probs=51.9
Q ss_pred CCccchhhheeeeeeccccC-Ccc-cCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFG-ELI-PGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIFMIKK 767 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyG-D~~-p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 767 (790)
-|+.||+||+++|+||+||| |+. |.+..|+ .....|+++.++.|++++.+.++.+.+.+.+..++
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~------~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYP------YAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT------TTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC------hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999 996 9887764 23457888999999999999999999988865443
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.68 E-value=6.8e-06 Score=86.89 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=49.1
Q ss_pred CCccceeeeeeeccccccc-ccc-cCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 127 GFPDSAYFCFITLTTIGFG-DFV-PAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVK 197 (790)
Q Consensus 127 sf~da~Yf~~iTltTIGfG-Di~-P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~~~~ 197 (790)
++.+|+||+|+++||+||| |+. |.+..+ ...++.++.+.++.|+.+++++++++.+.+.+..+
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~--------~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVY--------PYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTC--------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcC--------ChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999 997 876541 12357788888899999999999999998876544
No 47
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=91.62 E-value=0.15 Score=51.31 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=45.6
Q ss_pred CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 697 WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 697 ~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
-|+.+|+|+.+.++||.|++|+-..+-.+. ......|..++++.+..++.+.++.+.+.+.+
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~-----~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIY-----WWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999844322111 12334556667777788999999998887764
No 48
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=86.91 E-value=0.53 Score=56.43 Aligned_cols=54 Identities=13% Similarity=0.287 Sum_probs=43.9
Q ss_pred ccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 699 FLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIF 763 (790)
Q Consensus 699 ~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 763 (790)
+.+++|+++.+++..| ++..|.+..+| ++.++|+++++.+++...+.++..+..
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~R----------~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSGR----------IVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhhh----------hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6689999999999999 78899988888 889999999999999999999988775
No 49
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=80.94 E-value=0.72 Score=46.26 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCC-CccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 125 PWG-FPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 125 ~ws-f~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+++ +.+|+|+.|.++||.|++|+....... .......+...+++.+..++.++++++.+.+.+
T Consensus 162 ~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~-------~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 162 RWGDLGISLITLFQVLTLSSWETVMLPMQEI-------YWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp TTSSHHHHHHHHHHHHTTSSTHHHHHHHHTT-------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHccCCHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343 899999999999999999985432110 011234455556666688889999888877664
No 50
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=75.82 E-value=0.49 Score=53.28 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCccchhhheeeeeeccc--cCCccc----CCCcccccccccchhhHHHHHHHHH
Q psy17959 672 PIAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIG--FGELIP----GESYDRTLRGNKNISVLVSSSYILV 745 (790)
Q Consensus 672 ~~~~~~~~~~~~~~~g~~~~~~~e~~s~~da~Y~~~vt~tTVG--yGD~~p----~t~~gr~~~~~~~~~~~~~~~~~~~ 745 (790)
+....+++.++++++++++.... +.++.+|+.=++-+++||| .|.+-| .++.+| ++.++.|++
T Consensus 398 ~~~~~~~ly~~~~~~~~~~l~~~-g~~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K----------~vl~~~M~~ 466 (494)
T 3pjz_A 398 AVWGFFSAYALVFVVCMLGLIAT-GMDELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAK----------WVLIVSMLF 466 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SSCHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHH----------HHHHHHHHH
Confidence 33334444455555566655544 5899999999999999999 454433 344455 656666665
Q ss_pred H
Q psy17959 746 G 746 (790)
Q Consensus 746 g 746 (790)
|
T Consensus 467 G 467 (494)
T 3pjz_A 467 G 467 (494)
T ss_dssp H
T ss_pred H
Confidence 5
No 51
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=70.80 E-value=2.6 Score=50.36 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=40.0
Q ss_pred CccceeeeeeecccccccccccCCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 128 FPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVIS 194 (790)
Q Consensus 128 f~da~Yf~~iTltTIGfGDi~P~~~~~~~~~~~~~~~~~~~~~~~~~l~Gl~~~~~~i~~i~~~~~~ 194 (790)
+.+++||++.+++..| ++..|.+. .+|++.++|+++++.+.+...+.+.+.+..
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~------------~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSL------------SGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcch------------hhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5578999999999988 67777644 388999999999999999888888877664
No 52
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=35.96 E-value=30 Score=38.76 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhcC--CCccchhhheeeeeeccccCCcccCCCcccccccccchhhHHHHHHHHH
Q psy17959 668 RFRVPIAVSFLIIISFILLGSLIFNKLEN--WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNISVLVSSSYILV 745 (790)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~g~~~~~~~e~--~s~~da~Y~~~vt~tTVGyGD~~p~t~~gr~~~~~~~~~~~~~~~~~~~ 745 (790)
+.+..+.+..+..+++.++|++-|+..++ .||.||++=++--+||.|.-=+...+..++.+ ..+=....=+.
T Consensus 65 ~~re~~~~v~l~W~~~~~~galPf~~~~~~~~s~~dA~Fes~Sg~TtTG~tv~~~~~~lp~~~------l~wr~~l~wlG 138 (494)
T 3pjz_A 65 KSRDGFLIVVLFWTVLGSAGSLPFLIADNPNISVTDAFFESFSALTTTGATVIVGLDELPKAI------LFYRQFLQWFG 138 (494)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCHHHHHHHHHHHHTTCCCCCCCCCSSSCHHH------HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHhhcCCeEEecChhhccchH------HHHHHHHHHHh
Confidence 34556666777778888899999998754 89999999999999999976554444444421 11223455577
Q ss_pred HHHHHHHHHHHH
Q psy17959 746 GMAVISMCFNLI 757 (790)
Q Consensus 746 g~~~~~~~~~~i 757 (790)
|++++...+..+
T Consensus 139 GlGiivla~ail 150 (494)
T 3pjz_A 139 GMGIIVLAVAIL 150 (494)
T ss_dssp HHHHHTTTTSST
T ss_pred hHHHHHHHHHHH
Confidence 888877665443
No 53
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=20.57 E-value=65 Score=28.06 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17959 736 VLVSSSYILVGMAVISMCFNLIQEEIIFMIK 766 (790)
Q Consensus 736 ~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 766 (790)
..|..++++....++-+.++.+.+.+....+
T Consensus 72 iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~ 102 (112)
T 4f4l_A 72 VFFIPFIMLTTFTVLNLFIGIIVDAMAITKE 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666667777888888877766443
Done!