RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17959
(790 letters)
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 66.5 bits (163), Expect = 1e-13
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 107 FLVISYIIGGAFLFSHWE---PWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETA 163
L++ +I G +S E W F D+ YF F+TLTTIG+GD VP T
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVP-----------LTD 49
Query: 164 ELRIALCSLYLLFGIALLAMSFNLVQ 189
R+ +Y+L GI L + ++
Sbjct: 50 AGRL-FTIIYILIGIPLFLLFLAVLG 74
Score = 59.5 bits (145), Expect = 3e-11
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 17/88 (19%)
Query: 517 MIMVGYIYGGAVLFSKWED---WNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGVQ 573
++++ + G V +S E+ W+ LD YF F++L+TIG+GDIVP G+
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLT-DAGR------- 52
Query: 574 TLELSFILCAMYLMLGMALIAMCFNLMQ 601
+ +Y+++G+ L + ++
Sbjct: 53 ------LFTIIYILIGIPLFLLFLAVLG 74
Score = 54.5 bits (132), Expect = 2e-09
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 678 LIIISFILLGSLIFNKLEN---WTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGNKNI 734
++++ ++ G++ ++ E W FLD +F F +L TIG+G+++P R
Sbjct: 1 ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGR-------- 52
Query: 735 SVLVSSSYILVGMAVISMCFNLIQ 758
L + YIL+G+ + + ++
Sbjct: 53 --LFTIIYILIGIPLFLLFLAVLG 74
Score = 50.7 bits (122), Expect = 3e-08
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 30 GYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIG 64
GYG I P T G++ TI Y ++GIPL LL L+ +G
Sbjct: 40 GYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVLG 74
Score = 47.2 bits (113), Expect = 7e-07
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Query: 347 TIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIG 384
TI GYG++ P+T G++ TI Y + G+PLFLL+L+ +G
Sbjct: 38 TI-GYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAVLG 74
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 66.6 bits (162), Expect = 4e-11
Identities = 31/55 (56%), Positives = 34/55 (61%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
NA N +D D + EEEEEE+EEEEEEEEEEEEEEEEEE EE
Sbjct: 838 NAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 62.7 bits (152), Expect = 5e-10
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 412 QKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYED---SDFDTSDEEYDSSEEEEEEEE 468
+T D T + +N + A+ + + SD S+EE EEEEEEEE
Sbjct: 819 SETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE----EEEEEEEE 874
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETET 495
+EEEEEEEEEEEEEE EE E ET
Sbjct: 875 EEEEEEEEEEEEEEENEEPLSLEWPET 901
Score = 53.1 bits (127), Expect = 6e-07
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
SD S+EE + EEEEEEE+EEEEEEEEE E EE
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 51.5 bits (123), Expect = 2e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
D D E + EEEEEEE+EEEEEEEEE EEE E S
Sbjct: 859 DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLS 895
Score = 50.4 bits (120), Expect = 4e-06
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
D D+ +EE + EEEEEEE+EEEEEEEEE EE
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 47.3 bits (112), Expect = 3e-05
Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 7/42 (16%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
S GDSE E+ EE + EEEEEEE+EEEEEEEE E
Sbjct: 858 SDGGDSEEEE-------EEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 46.5 bits (110), Expect = 5e-05
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE---EEEEEEEEEEEEEEGEEEETE 494
A + + + E + + + E ++++E+ + + EEEEEEEEEEEE EEEE E
Sbjct: 823 ADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Query: 495 TASSSTAKNDPQMVTVPIT 513
+P + P T
Sbjct: 883 EEEEEEENEEPLSLEWPET 901
Score = 46.1 bits (109), Expect = 7e-05
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D + EEEEE+EEEEEEEEE EEEE E
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEE 885
Score = 43.4 bits (102), Expect = 5e-04
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E + + + EEEE+EEEEEEEEE EEEE E
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Score = 40.0 bits (93), Expect = 0.006
Identities = 21/54 (38%), Positives = 25/54 (46%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
G+ E E + D E E E E E E E+E E E EE EE +E E E
Sbjct: 695 GEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Score = 39.2 bits (91), Expect = 0.009
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 216 EDSDFDTSDEEYDSSEEE----EEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
E+ DE+ + EE+EEEEEEEEE EEEE E +P + P
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWP 899
Query: 272 IT 273
T
Sbjct: 900 ET 901
Score = 37.7 bits (87), Expect = 0.026
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
R G+ E E + +E EE E E E E E E+E E E EEGEE E E
Sbjct: 689 RKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Query: 499 STAKNDPQ 506
+ K++ +
Sbjct: 749 AEGKHEVE 756
Score = 37.7 bits (87), Expect = 0.029
Identities = 21/68 (30%), Positives = 29/68 (42%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
G+ E +++D E + E E E E E+E E E EE EE E+ E E E
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGK 752
Query: 497 SSSTAKND 504
+ D
Sbjct: 753 HEVETEGD 760
Score = 36.9 bits (85), Expect = 0.049
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
N G+ E + E ++ E + + E + EE E E E E E E+EGE E E
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGE 736
Score = 36.9 bits (85), Expect = 0.052
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+S+ + E E E E E E + + E E EE E E E E E TE +
Sbjct: 679 NESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEG 738
Query: 506 QMV 508
+ V
Sbjct: 739 EEV 741
Score = 36.5 bits (84), Expect = 0.072
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 415 IQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYD---SSEEEEEEEEDEE 471
++ GA + + G SE + D + DE + ++E + E ++DE+
Sbjct: 791 MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEK 850
Query: 472 EEEEEEEE---EEEEEEEEGEEEETETASSSTAKNDPQMVTVPITL 514
+ + EEEEEE EEEE E + + + P++L
Sbjct: 851 GVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896
Score = 34.6 bits (79), Expect = 0.23
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE--EEEEEEGEEEETETASSS 499
++E + + +T E + E E EE EE E+E E E E E E EG+ +ETE +
Sbjct: 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGET 770
Query: 500 TAK 502
A+
Sbjct: 771 EAE 773
Score = 34.2 bits (78), Expect = 0.36
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G++E E + E + E + E E E E E +E + + E E EE E E + +
Sbjct: 665 GEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Query: 501 AKNDPQ 506
D
Sbjct: 725 GTEDEG 730
Score = 33.8 bits (77), Expect = 0.40
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 171 SLYLLFGIAL--LAMSFN-----LVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTS 223
SL LL AL M +N V+E++ + + +AK + + S GD + + +
Sbjct: 588 SLLLLLAYALYVFTMKWNKQIELWVKEQL--SRRPVAKVMALGDLSKGDVAEAEHTGERT 645
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
EE + E E E EE E E+ E ET+ + S
Sbjct: 646 GEEGERPTEAEGENGEESGGEAEQEGETETKGENESE 682
Score = 33.8 bits (77), Expect = 0.47
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 209 SNGDSEYEDSDF--DTSDEEYDSSEEEEEE--EDEEEEEEEEEGEEEETETASSSTAKND 264
G+ E +++D +T EE + E E E EDE E E EEGEE E E + K++
Sbjct: 695 GEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHE 754
Query: 265 PQ 266
+
Sbjct: 755 VE 756
Score = 33.4 bits (76), Expect = 0.52
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 417 DTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
+ TG R + A N + + E E ++ E + E + E+E E E E +
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAK 702
Query: 477 EEEEEEEEEEEGEEEETET 495
E + + E E E E E ET
Sbjct: 703 EADHKGETEAEEVEHEGET 721
Score = 32.7 bits (74), Expect = 0.93
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE--EEEEEEEEEEEGEEEETE 494
A + E E T DE + EE EE EDE E E E E E E + +E E E
Sbjct: 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGET 770
Query: 495 TASSSTAKND 504
A +++
Sbjct: 771 EAEGKEDEDE 780
Score = 32.3 bits (73), Expect = 1.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 209 SNGDSEYE-----DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
S G+ E + + + +E D E E EE E E E E EG E+E E + +
Sbjct: 681 SEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE 739
Score = 31.9 bits (72), Expect = 1.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
GD + + + EE + E E E +E E E+E E E + E E E
Sbjct: 633 GDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIP 686
Score = 31.5 bits (71), Expect = 2.0
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+K G+ E + + ++ + + + EEEEEE EEEE E + +
Sbjct: 828 VKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEE 887
Query: 266 QMVTVPITL 274
+ P++L
Sbjct: 888 EENEEPLSL 896
Score = 30.7 bits (69), Expect = 3.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 451 DTSDEEYDSSEEEEEE-EEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + E + E E E + E E E E E E +E+E+EGE + E
Sbjct: 743 DEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGE 787
Score = 30.7 bits (69), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
S E E+E E E + E E E E E + +E E E +
Sbjct: 663 SGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 30.3 bits (68), Expect = 4.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E E E E +EDE+E E + E+ E + +EG E + E + A
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEA 809
Score = 30.0 bits (67), Expect = 6.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D +E E E EE E E E E EE G E E E + + +N+
Sbjct: 634 DVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENE 680
Score = 30.0 bits (67), Expect = 6.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+T + ++ E E E E +E+E+E E + E+ E +G+E
Sbjct: 756 ETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGA 797
Score = 29.6 bits (66), Expect = 8.0
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE-EEETETASSS 499
GD D E E E E + E EE E E+E E E + E E+E +
Sbjct: 628 GDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPA 687
Query: 500 TAKND 504
K +
Sbjct: 688 ERKGE 692
Score = 29.6 bits (66), Expect = 9.2
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
A H G ++ + E E T DE + EE EE ++E E E E E ETE
Sbjct: 704 ADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 62.7 bits (153), Expect = 6e-10
Identities = 20/73 (27%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D ++ + D D+ + E+ + +E+E+EE+E+ ++E++EEEEE E+E+ + S+ +
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAEST 387
Query: 502 KND-PQMVTVPIT 513
+++ P P +
Sbjct: 388 RSELPFTFPCPKS 400
Score = 53.9 bits (130), Expect = 3e-07
Identities = 17/62 (27%), Positives = 37/62 (59%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ +EE D ++E+EE++D++ EEEEE+ + +EEE+ E+E+++ + +
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Query: 505 PQ 506
+
Sbjct: 375 EK 376
Score = 53.1 bits (128), Expect = 5e-07
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 440 NGDSEYEDSD-FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ + E +D D F E D EEE+ ++++EE+++++ EEEEE+ + +EEE E
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDED 362
Query: 499 STAKND 504
S ++D
Sbjct: 363 SDDEDD 368
Score = 51.9 bits (125), Expect = 1e-06
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND-PQMVTV 270
D E E+ D D SDEE +EE+E+ D+E++EEEEE E+E+ + S+ + +++ P
Sbjct: 341 DLEEEEEDVDLSDEE---EDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELPFTFPC 397
Query: 271 PIT 273
P +
Sbjct: 398 PKS 400
Score = 51.2 bits (123), Expect = 2e-06
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D E +D D + +E+ D S+EEE+EEDE+ ++E++E EEEE + + +
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 50.4 bits (121), Expect = 3e-06
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + + +D + + D + EE+EE+E+ ++E++EEEEEEE+E++++ E T +
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Score = 48.8 bits (117), Expect = 9e-06
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
ED + + D D EE+++++ +EEEE+ + +EEE+EE+E ++E +
Sbjct: 316 LGQGEEDEE-EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Query: 501 AK 502
K
Sbjct: 375 EK 376
Score = 48.8 bits (117), Expect = 1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEE-------EEDEEEEEEEEEEEEEEEEE 486
RR D E E+ +++D+ D E ++++ EEDEEEEE+ ++E+EE+++
Sbjct: 280 RRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDD 339
Query: 487 EGEEEETETASSSTAKND 504
+ EEE E S + D
Sbjct: 340 DDLEEEEEDVDLSDEEED 357
Score = 48.5 bits (116), Expect = 1e-05
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ D ++ + D D EE+EEEE++ ++E+EE+++++ EEE E+ +
Sbjct: 297 ESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Query: 499 STAKND 504
D
Sbjct: 357 DEEDED 362
Score = 48.1 bits (115), Expect = 2e-05
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 202 HLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
G + +D D + D++ + EE+ + DEEE+EE+E+ ++E+ E
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Query: 262 KN 263
+
Sbjct: 377 EK 378
Score = 47.3 bits (113), Expect = 3e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D E E+ D DEE D + EEEEED + +EEE+ E+E+++ + + +
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 46.9 bits (112), Expect = 4e-05
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVT 269
D + ED D D +EE D +EEE++E+E+ ++E+ EEEE E K+ +
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Score = 43.4 bits (103), Expect = 4e-04
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 209 SNGDSEYEDSD-FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ + E +D D F E D EEE+ +DE+EE+++++ EEEE + S +++
Sbjct: 302 LDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Score = 38.1 bits (89), Expect = 0.021
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ +EE D ++E+EE+D+++ EEEEE + E +D
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD 364
Score = 35.7 bits (83), Expect = 0.094
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S+ D D+ D + ++++ D ++ E++EE EEE+ E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 34.6 bits (80), Expect = 0.22
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 460 SEEEEEEEEDE-----EEE-----EEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+EEE +EE E E E EEE++EEEE+ + ++ + ++
Sbjct: 259 TEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDN 313
Score = 33.8 bits (78), Expect = 0.36
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
SE + D D+++D + + +D E++EE+EEE+ E +++
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKS 174
Score = 33.4 bits (77), Expect = 0.51
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+D D + ++ D+ + EEDEEEEE+ + E+EE
Sbjct: 300 DDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEE 336
Score = 33.4 bits (77), Expect = 0.55
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ +D D ++ D + ++ E++EE+EEE+ E
Sbjct: 126 IDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 33.0 bits (76), Expect = 0.69
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ D E+ D + D + + EEEEEEE E+++++ E E
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 33.0 bits (76), Expect = 0.70
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEE--EEEDEEEEEEEEEGEEEETETAS 257
+ E D D+E++ +++ + EE+EEEEE+G ++E E
Sbjct: 291 EEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDD 338
Score = 32.7 bits (75), Expect = 0.87
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S ++ D +F+ D++ + EE+E+EEE+ ++E EE++ +
Sbjct: 295 SKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD 340
Score = 32.7 bits (75), Expect = 0.96
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 202 HLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEE------DEEEEEEEEEGEE 250
HLG +S + + +D D ++ D + ++ E++EE+EEE E
Sbjct: 118 HLG--QSLSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 32.3 bits (74), Expect = 1.4
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ + +D D D + D + ++ E++EE+EEE+ E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 30.4 bits (69), Expect = 4.7
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D E E+ +++D+ D E ++++ + EE+E EEE+
Sbjct: 288 DDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDE 335
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 56.3 bits (136), Expect = 9e-09
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 408 PRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEE 467
P++L + A + S R+ + E D +++ E E+ +E
Sbjct: 113 PKELYSVMGINKKAGKKLALSK--FKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDE 170
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETET 495
EDE++EEEEEEEEEE+E+ + ++++ +
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 38.2 bits (89), Expect = 0.008
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
K ++E D + D DEE + EEEEE+ED ++++++++
Sbjct: 159 KLKELEAEDVDEE-DEKDEE-EEEEEEEEDEDFDDDDDDDDD 198
Score = 37.8 bits (88), Expect = 0.010
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E+ D +E++EEE+EEEEEE+E+ ++++ +
Sbjct: 165 AEDVDEEDEKDEEEEEEEEEEDEDFDDDDDD 195
Score = 37.4 bits (87), Expect = 0.016
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
E + + + D + + ++EEEEE+EEEE+E+ + ++++ +
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 37.0 bits (86), Expect = 0.018
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E ED D S E E E E+ DEE+E++EEE EEEE E
Sbjct: 145 EEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 36.7 bits (85), Expect = 0.028
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
E E D D DE+ + EEEEEEEDE+ ++++++ +
Sbjct: 161 KELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 35.1 bits (81), Expect = 0.089
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ E+ +E+ E++ +E E E+ +EE+E +EEE E
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEE 184
Score = 33.2 bits (76), Expect = 0.34
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE---EEEGEEEETE 254
K G E+ D D + +E E ED +EE+E EEE EEEE +
Sbjct: 135 FKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEED 186
Score = 31.3 bits (71), Expect = 1.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEEE+ +++ E++ +E E E+ + E+E+ E
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Score = 30.9 bits (70), Expect = 2.0
Identities = 9/44 (20%), Positives = 26/44 (59%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
+K + E+ + D +EE + E+E+ ++D+++++++ E
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAE 203
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 57.4 bits (139), Expect = 1e-08
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 436 WNARNGDSEYEDSDF--DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
W + ++ ++ SD+E +SS+ E+EEE+DE ++ +E+ +EE EE+ EE
Sbjct: 104 WEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAE 163
Query: 494 ETASSSTAK 502
E + + +
Sbjct: 164 EEEAEAEKE 172
Score = 52.4 bits (126), Expect = 4e-07
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 441 GDSEYEDSDFDTSDEE------YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+E + + SD+E E E + EDEEE++E ++ +E+ +EE EE+ E
Sbjct: 100 EEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEE 159
Query: 495 TASSSTAKNDPQ 506
A+ +
Sbjct: 160 EAAEEEEAEAEK 171
Score = 52.0 bits (125), Expect = 5e-07
Identities = 21/57 (36%), Positives = 39/57 (68%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
D E E SD + +E+ +++++ +E+ ++E EE+EEE EEEE E +E+ +E A++
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATT 180
Score = 51.2 bits (123), Expect = 1e-06
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 433 NRRWNARNGDSEYEDSDFDT-------SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
R D D D DE+ D E + E D+E E + E+EEE++E
Sbjct: 81 EERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDE 140
Query: 486 EEGEEEETETASSSTAKNDP 505
+ +E S +
Sbjct: 141 AAKKAKEDSDEELSEEDEEE 160
Score = 44.3 bits (105), Expect = 1e-04
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
E + E E +++++E+EE E EE+E+ ++E E E + E SS
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Score = 43.1 bits (102), Expect = 3e-04
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 208 SSNGDSEYEDSDFDTSDEEY----DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+ + E+E + + SD+E S++E E D E+EEE++E ++ E + ++
Sbjct: 97 DDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEE 156
Query: 264 D 264
D
Sbjct: 157 D 157
Score = 43.1 bits (102), Expect = 4e-04
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 212 DSEYEDSDFDT------SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E EDSD + SD+E +SS+ E+EEE +E ++ +E +EE A +
Sbjct: 106 VEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEE 164
Score = 42.3 bits (100), Expect = 6e-04
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EE +E E+ E +++++EEEE E EE+E+ +E E S
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD 124
Score = 41.9 bits (99), Expect = 7e-04
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+ +S+ E D+ DEE ++ +ED +EE EE+ EE E + + +
Sbjct: 120 DVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 41.6 bits (98), Expect = 0.001
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
DSE E+ + + + + S+EE EEDEEE EEEE E E+ + + +T +
Sbjct: 131 DSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTR 181
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
D E E SD + +EE D + ++ +E+ +EE EE+E E E E A + K
Sbjct: 124 DKEIESSDSE-DEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 40.0 bits (94), Expect = 0.003
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ +EEE + +E E+ E +++++EEEE E EE E +
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 39.6 bits (93), Expect = 0.004
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
S+ + E+ D + D E DS +EEE++E ++ +E+ + E E + ++ +
Sbjct: 111 DSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEE 165
Score = 39.3 bits (92), Expect = 0.006
Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 193 ISNVKAIAKHLGIIKSSNGDSEYEDSDFDT-SDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
I ++ + K + + +SD D +EE++ E+E+ +++ E + E + E E
Sbjct: 69 IPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIE 128
Query: 252 ETE 254
++
Sbjct: 129 SSD 131
Score = 38.5 bits (90), Expect = 0.009
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
I+SS+ + E E + +E E EE+E+E EEEE E E+E+ +++
Sbjct: 127 IESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTR 181
Score = 37.7 bits (88), Expect = 0.017
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+EEE ++ E E+ E +++++EEEE EE+ ++ +
Sbjct: 78 WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVE 122
Score = 35.8 bits (83), Expect = 0.080
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E+ +EE+ +++E E+ E +++++E EE E E S
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDS 112
Score = 35.0 bits (81), Expect = 0.11
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S+ D + E+ DE+ D E + E ++E E + +EEE +
Sbjct: 93 ESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKD 139
Score = 35.0 bits (81), Expect = 0.12
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E+ ++EE +++E E+ E ++++ EEEE E + ++ + + V
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVE 122
Score = 33.9 bits (78), Expect = 0.30
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ +E+E +++E E+ E +++++ EEE +
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEG 116
Score = 33.1 bits (76), Expect = 0.48
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
+EE E E+ E +++++EEEE E EE E +
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 32.3 bits (74), Expect = 0.82
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDE-EEEEEEEEGEEEETETASSS 259
E+ E+ S+++++EE+E E EE+E+ +E E S
Sbjct: 78 WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD 124
Score = 32.3 bits (74), Expect = 0.83
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
E++ E +++E ++ E ++++ EEEE E + ++ + + V
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVE 122
Score = 31.9 bits (73), Expect = 1.1
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+E E+ E D++++EEEE EE+ ++ +
Sbjct: 81 EERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVE 122
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 58.0 bits (140), Expect = 1e-08
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 424 RRRSSAMNHNRRWNARNGDS----EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE 479
R+ +S+ + + + ++S+ + S EE + EEEEEEEE E EEEE E+E
Sbjct: 411 RQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDE 470
Query: 480 EEEEEEEEGEEEETETASSSTAKNDP 505
EEEEE E E E SS D
Sbjct: 471 EEEEEVEADNGSEEEMEGSSEGDGDG 496
Score = 56.8 bits (137), Expect = 3e-08
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 416 QDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTS-DEEYDSSEEEEEEEEDEEEEE 474
QD T RR+ + ++R+ D S S SEEEE EE+EEEEE
Sbjct: 395 QDDTEEEERRKRQE-RERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEE 453
Query: 475 EEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EEEEEE+E EEEEGE+EE E + ++ +M
Sbjct: 454 EEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 53.0 bits (127), Expect = 5e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E+ + +EE + EEEE+E E+EE E+EEEEEE E + EE E +
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGD 495
Query: 501 AKNDPQ 506
+ +
Sbjct: 496 GEEPEE 501
Score = 49.9 bits (119), Expect = 5e-06
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE---------EEGEEEE 492
E E+ + + +EE SEEEE E+E+EEEE E + EEE E EE EE+
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDA 503
Query: 493 TETASSS 499
S
Sbjct: 504 ERRNSEM 510
Score = 46.8 bits (111), Expect = 4e-05
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
S E+ + +EE + EEEE+E +EEE E+EEE EE E + S + +
Sbjct: 433 SMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 44.9 bits (106), Expect = 2e-04
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E E+ + S+EE EEEEEE E + EEE E E + + E EE +S
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEM 510
Query: 502 KNDPQM 507
+M
Sbjct: 511 AGISRM 516
Score = 43.4 bits (102), Expect = 5e-04
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSE---EEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
S + E + + +EE + E EEEE EDEEEEEE E E E SS
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Query: 264 DP 265
D
Sbjct: 495 DG 496
Score = 43.0 bits (101), Expect = 6e-04
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
++S+ + S EE + EEEEEEE+EE+E EEEEGE+EE E + ++ +M
Sbjct: 437 QESEEEESVEEEE--EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 42.2 bits (99), Expect = 0.001
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 405 PTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEE 464
T R + +T + +S + + E E+ + + EE + +EEE
Sbjct: 413 GTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEE 472
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EEE + + EEE E E + +GEE E +
Sbjct: 473 EEEVEADNGSEEEMEGSSEGDGDGEEPEED 502
Score = 37.2 bits (86), Expect = 0.040
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
S + E E+ + + ++E + E E+EEE+EE E + EE E + + +
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEE 501
Score = 35.3 bits (81), Expect = 0.16
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E EEEE EEEEEEEEEE EEE+ + + + V
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 34.5 bits (79), Expect = 0.28
Identities = 21/61 (34%), Positives = 27/61 (44%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
S + D S S EEEE +EEEEEEEEE EEE+ + + +
Sbjct: 416 SRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEE 475
Query: 268 V 268
V
Sbjct: 476 V 476
Score = 33.7 bits (77), Expect = 0.46
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEED---EEEEEEE---------EEGEEEETE 254
+ + E E+ + S+EE EEEEEE + EEE E EE EE+
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAER 505
Query: 255 TASSS 259
S
Sbjct: 506 RNSEM 510
Score = 33.3 bits (76), Expect = 0.62
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
SE E+ + + +EE ++ EEE + E + + E EE +S +M
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM 516
Score = 32.2 bits (73), Expect = 1.4
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ S D +S S +E E+EE EEEEE EEEE E S +
Sbjct: 410 ERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGE 468
Score = 29.9 bits (67), Expect = 5.9
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE--EGEEEETETASSS 499
+ E E + S+EE + S E + + E+ EE+ E E EG++ +
Sbjct: 471 EEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPE 530
Query: 500 TAKNDPQ 506
+ + +P
Sbjct: 531 SPQEEPL 537
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 52.2 bits (125), Expect = 9e-08
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
D + +EE + EE E+ EDEEE E+EEEEEE+EE+ + ++ E + + N Q
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
Score = 44.1 bits (104), Expect = 4e-05
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 451 DTSDEEYDSSEE--EEEEEEDEEEEEEEEEEE---------EEEEEEEGEEEETETASSS 499
D E D +E E++EEE+EE+EEE EE E E+EEEEE +EE+
Sbjct: 35 DIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDI 94
Query: 500 TAKNDPQM 507
KN +
Sbjct: 95 EKKNINDI 102
Score = 43.7 bits (103), Expect = 7e-05
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
TS ++ D +E E+ +++++E++EEEEEE+EEE EE E+ E E
Sbjct: 29 TSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIV 75
Score = 41.8 bits (98), Expect = 3e-04
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E E+ + + + E EEE E+E+EEEE+EE+ + ++ E++ + + A
Sbjct: 52 EEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNA 111
Query: 502 KN 503
+N
Sbjct: 112 QN 113
Score = 40.2 bits (94), Expect = 0.001
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE----- 243
E ++ +VK + I N D + E + D +EE D E EE E+ E+EEE
Sbjct: 19 DENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDE 78
Query: 244 EEEEGEEEETETASSSTAKNDPQM 267
EEEE +EE+ KN +
Sbjct: 79 EEEEEDEEDNVDLKDIEKKNINDI 102
Score = 39.1 bits (91), Expect = 0.002
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 442 DSEYEDSDFDTSDEEYDS--SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ E E+ + D E + E+EEEEEEDEE+ + ++ E++ + + + A +
Sbjct: 55 EEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNL 114
Query: 500 TAKN 503
+KN
Sbjct: 115 ISKN 118
Score = 36.0 bits (83), Expect = 0.032
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ + E ED + E+ + EE E+E+EEEE+EE+ + ++ E + + N Q
Sbjct: 51 DEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
Score = 34.4 bits (79), Expect = 0.098
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D DEE +EEEEEEDEE+ + ++ E++ +ST ++ Q
Sbjct: 67 DIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQ 112
Score = 32.9 bits (75), Expect = 0.35
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E D + +E + EEEEE+EED + ++ E++ + +++ + S K +
Sbjct: 64 EPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKN 122
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 52.2 bits (125), Expect = 1e-07
Identities = 25/49 (51%), Positives = 30/49 (61%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
T DEE D + EE EEDEEE E+ E+ +EE+EE E EE ASS
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKA 65
Score = 50.7 bits (121), Expect = 3e-07
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET--ASSSTAK 502
E++DS EE EE+E+E E+ E+ +EE+EE EE EEE + A SS++K
Sbjct: 22 EDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSK 71
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEE 490
++ R ++ E+ D+D+ EE + EEE E+ ED +EE+EE EE EEE
Sbjct: 7 AKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAP 66
Query: 491 EETETASSSTAKNDPQMVTVP 511
+ +SS + P
Sbjct: 67 SSSSKSSSQETISIPPTPPAR 87
Score = 42.2 bits (99), Expect = 3e-04
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+ E+ D+D+ EE + EEE E+ ++ +EE+EE EE E ETA+SS A
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKA 65
Score = 39.9 bits (93), Expect = 0.002
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
E DS + +E+ + E+ E+ DEE+EE EE EE + + S++ T+ I
Sbjct: 22 EDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISI 80
Score = 35.7 bits (82), Expect = 0.035
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
S + ED + ++ DS +EE+EE +E EEE + + + SSS
Sbjct: 25 DSQAEEVEEDEE--EMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETI 78
Score = 34.9 bits (80), Expect = 0.083
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E+++ S +EE+EE +E EEE + + +ET + + P
Sbjct: 39 EDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISIPPTPPARRPS 90
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 53.2 bits (128), Expect = 1e-07
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE------------EEEEEEEE 485
+ + + +SD D SD DS +++ ++D+ E+E EE+E EE
Sbjct: 107 RKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREE 166
Query: 486 EEGEEEETETASSSTAKNDPQM 507
EE EE + +P +
Sbjct: 167 EEKAAEEEKAREEEILTGNPLL 188
Score = 50.1 bits (120), Expect = 1e-06
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE---------EEEEEEEEEEEEEE 487
+ARN D+ D +SD + + ++++ EDE +E EE+E EEEE+
Sbjct: 113 DARNSDA---DDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEK 169
Query: 488 GEEEETE 494
EEE
Sbjct: 170 AAEEEKA 176
Score = 42.0 bits (99), Expect = 6e-04
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
IK + + +SD D SD DS +++ +D++ E+E
Sbjct: 104 EIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146
Score = 41.2 bits (97), Expect = 0.001
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDS-----------SEEEEEEEDEEEEEEEEEGEEEETETA 256
S+ DS+ D D D D E ++ E EE+E EEEE+ EE + E E
Sbjct: 123 DSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEIL 182
Query: 257 SS 258
+
Sbjct: 183 TG 184
Score = 39.7 bits (93), Expect = 0.003
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 13/91 (14%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEE-----------E 236
+E+ I + + S DS D SD+ D SE+E E
Sbjct: 100 DEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDD--DDSEDETAALLRELEKIKKE 157
Query: 237 EDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
EE+E EEEE EE + +P +
Sbjct: 158 RAEEKEREEEEKAAEEEKAREEEILTGNPLL 188
Score = 39.3 bits (92), Expect = 0.004
Identities = 18/91 (19%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 409 RDLQKTIQDTTGAYNRRR---SSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEE 465
RDL+ +++ A+ ++ + + ++ N S D D D DE EE+
Sbjct: 57 RDLRAELEEAERAHKSKKENKLAIEDADKSTNLD--ASNEGDEDDDEEDEIKRKRIEEDA 114
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D ++ + + + +++ + ++ E ETA
Sbjct: 115 RNSDADDSDSSSDSDSSDDDSDDDDSEDETA 145
Score = 31.6 bits (72), Expect = 1.3
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 200 AKHLGIIKSSNGDSEYEDSDF---------DTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
A + +SN E +D + D + + D S+ + + +++ ++++ E+
Sbjct: 83 ADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSED 142
Query: 251 EETE 254
E
Sbjct: 143 ETAA 146
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 54.0 bits (130), Expect = 2e-07
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
R S R R + + DF+ DE+ E+EEEE+ +E EEEE E+ EEE
Sbjct: 344 LRNPSTKESKMRDKRR---ARLDPIDFEEVDED----EDEEEEQRSDEHEEEEGEDSEEE 396
Query: 484 EEEEGEEEETETASSSTAKNDPQ 506
+ E+ +E++S + ++ +
Sbjct: 397 GSQSREDGSSESSSDVGSDSESK 419
Score = 45.1 bits (107), Expect = 1e-04
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ D D E +E+EEEE +E EEEEGE+ E E + S +
Sbjct: 360 ARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSE 407
Score = 43.6 bits (103), Expect = 3e-04
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ + DF+ DE+ D EE+ +E EEEE E+ E E ++ SS + +D
Sbjct: 360 ARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSD 411
Score = 39.7 bits (93), Expect = 0.005
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D E D D D +E+ EEEE ED EEE + + ++ +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKA 420
Score = 38.6 bits (90), Expect = 0.011
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D + ++ + SDE + E+ EEE + E+ E + + + + E+AS S
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDS 428
Score = 36.6 bits (85), Expect = 0.051
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
D E E + +EE + SEEE + ++ E + + E + +E +++ S
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 35.9 bits (83), Expect = 0.086
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D + E+ EE + + EEE + E+ E + + E ++E+ + S S
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 33.6 bits (77), Expect = 0.47
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
G+ E+ D +SS + + E + ++E + + E
Sbjct: 389 EGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 31.6 bits (72), Expect = 1.8
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D E E + +EE + SEEE + E+ E ++E+ +
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 31.2 bits (71), Expect = 2.1
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
I D + ++ + SDE + E+ EEE + E+ + + S S A +
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 31.2 bits (71), Expect = 2.1
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ G+ E+ D S + D E + ++E + ++E
Sbjct: 386 EEEEGEDSEEEGSQSREDG--SSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 52.9 bits (127), Expect = 2e-07
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE---------DEEEEEEEEEEEEEEEEEEG 488
AR+GD E ++ +TSD+ Y + + E++E D EEEE EE EE+EEEE E
Sbjct: 38 ARDGDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Query: 489 EEEETE 494
E EE E
Sbjct: 98 ESEEFE 103
Score = 45.2 bits (107), Expect = 8e-05
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE-EEEEEGEEEETETASS 498
N D ED + + EEEE EE +E+EEEE EEE EE E + EE TE +
Sbjct: 59 NPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQ 118
Score = 43.3 bits (102), Expect = 3e-04
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
N D ED + + EEEE EE EE+EEEE E E EE E
Sbjct: 59 NPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 36.7 bits (85), Expect = 0.037
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE--EEEEE--------EEEEEGE 489
G E S+ D +EE + EE+EEEE +EE EE E + EE EE EEG
Sbjct: 68 EGRIEVRISE-DGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGF 126
Query: 490 EEETETA 496
+ E A
Sbjct: 127 QAMVEQA 133
Score = 36.0 bits (83), Expect = 0.058
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
G E S+ +E + E+EEEE +EE EE E G+ E T +S
Sbjct: 68 EGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASE 117
Score = 35.6 bits (82), Expect = 0.077
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 210 NGDSEYEDSDFDTSDEEYDS---SEEEEE-------EEDEEEEEEEEEGEEEETETASSS 259
+GD E ++ +TSD+ Y + E++E ED EEEE EE E+EE E S
Sbjct: 40 DGDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 49.2 bits (117), Expect = 3e-07
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
NA +E E++ D+E + EEEE +E+DEEEE E EEEE EEEEE A
Sbjct: 31 NAPANGNENEENGAQEGDDEME--EEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAA 88
Query: 497 SSSTAKNDPQ 506
+ +
Sbjct: 89 EDEEDDAETK 98
Score = 41.9 bits (98), Expect = 1e-04
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 431 NHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE---EEEEEEEE 487
N N A+ GD E E+ + D+E + E EEEE E+EEE E + E+EE++ E
Sbjct: 37 NENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAE 96
Query: 488 GEEEETE 494
++++T+
Sbjct: 97 TKKQKTD 103
Score = 40.7 bits (95), Expect = 2e-04
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG-EEEETETASSSTAKND 264
+NG+ E+ + DE + E +E++E+EE E EEEEG EEEETE A+ A D
Sbjct: 32 APANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAED 90
Score = 36.9 bits (85), Expect = 0.006
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
NG E +D + + + D EEE E E+EE EEEEE A + +
Sbjct: 42 NGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETK 98
Score = 35.7 bits (82), Expect = 0.013
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 25/73 (34%)
Query: 447 DSDFDTSDE--EYDSSEEEEEEEE-----------------------DEEEEEEEEEEEE 481
D+ D + E D E++E EE DE EEEEE +E++
Sbjct: 2 DTKVDAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDD 61
Query: 482 EEEEEEGEEEETE 494
EEEE EGEEEE E
Sbjct: 62 EEEEGEGEEEEGE 74
Score = 35.3 bits (81), Expect = 0.022
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ + NG + + + + + + +E EEEE+ +E++EEEEGE EE E
Sbjct: 23 VEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEE 72
Score = 33.8 bits (77), Expect = 0.063
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ E E+ D D +EE + EEE EEE+E E + E+E + A + K D
Sbjct: 47 GDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQKTD 103
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 48.0 bits (115), Expect = 3e-07
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D +YDS E EEEEE E+ E E+EE+EEE+++++
Sbjct: 39 DYDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDD 72
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
D D+D SD E++ EE E+ E E+EE+EEE+ +++
Sbjct: 39 DYDYD-SDAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 29.9 bits (68), Expect = 0.72
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 212 DSEYEDSDFDTSDEE----YDSSEEEEEEEDEEEEEE 244
D +Y DSD + +EE +S +EE+EEED++++ +
Sbjct: 39 DYDY-DSDAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 50.0 bits (120), Expect = 3e-07
Identities = 18/32 (56%), Positives = 29/32 (90%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EE+E +D+EE+EEEE++EE+++E+E EEEE+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 48.1 bits (115), Expect = 1e-06
Identities = 17/31 (54%), Positives = 27/31 (87%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EE+E ++DEE+EEEE++EE+++E+E EEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 47.7 bits (114), Expect = 2e-06
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E D S+++EE+EE+E++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.9 bits (112), Expect = 3e-06
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
S+E+ +EE+EEEED+EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.2 bits (110), Expect = 6e-06
Identities = 15/28 (53%), Positives = 25/28 (89%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E +++EEDEEEE++EE+++E+E EEE
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 45.8 bits (109), Expect = 8e-06
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
S E+E +++E++EEEE++EE+++E+E EE E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.8 bits (109), Expect = 9e-06
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
S + +SEE+E ++++E+EEEE++EE+++E+E E EE
Sbjct: 102 SGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 2e-05
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE+E +++EE+EEEE++EE+++E E EE E+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 44.6 bits (106), Expect = 3e-05
Identities = 17/30 (56%), Positives = 26/30 (86%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
++E D EE+EEEED+EE+++E+E EEEE+
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 44.2 bits (105), Expect = 3e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
DE D E+EEEE+++E+++E+E EEEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 44.2 bits (105), Expect = 4e-05
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EEDE +++EE+EEEE++EE++ E+E E S
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 43.1 bits (102), Expect = 9e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
DE D E+EEEE+DEE+++E+E EEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE++ +++EE+EEEE++EE+++ +E E E + K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 41.2 bits (97), Expect = 4e-04
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
S+E+ +EE+EEE+++EE+++E+ EEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 41.2 bits (97), Expect = 4e-04
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
EE +S ++EE+EE+E++EE+++E E EE E+
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 40.4 bits (95), Expect = 7e-04
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E D S+++EE+E+EE++EE+++ +E E E + K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEE 477
+ ++ D+E D EE++EE++DE+E EEEE
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 40.0 bits (94), Expect = 0.001
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+ ++ D+E D EE++EE+D+E+E EEEE
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
D SD++ + EEE++EE+D+E+E EEEE
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 38.5 bits (90), Expect = 0.004
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E+E +++EE+EEEE++EE ++E+ S K
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 36.9 bits (86), Expect = 0.011
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+E +++E++EEEE++EE ++E+ S K
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 35.8 bits (83), Expect = 0.028
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
S + +SEE+E ++DEE+EEEE++ E+++ +
Sbjct: 102 SGQHLVASEEDESDDDEEDEEEEDDEEDDDEDE 134
Score = 35.0 bits (81), Expect = 0.044
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE 473
SE ++SD D DEE + EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.2 bits (79), Expect = 0.085
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
SE ++SD D DEE + EE+++E++ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.4 bits (69), Expect = 1.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDE 470
+ E +D + D +E+ + ++E+E EE+E
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 29.2 bits (66), Expect = 4.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEE 240
+ E +D + D +E+ + ++E+E E+EE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 28.4 bits (64), Expect = 7.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 196 VKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDE 239
V +HL + D + ED + + DEE D +E+E EE+E
Sbjct: 99 VHISGQHLVASEEDESDDDEEDEE-EEDDEEDD--DEDESEEEE 139
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 51.6 bits (124), Expect = 4e-07
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 4/46 (8%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+ D DEE++ EEEEEEE D + ++ E++E E ++EEEGE+E
Sbjct: 36 EEED----DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKE 77
Score = 43.9 bits (104), Expect = 1e-04
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDS-SEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ D E+E + + +EE DS ++ E++E + ++EEE E+E + EE +
Sbjct: 34 FEEEEDDEEFEIEE-EEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 211 GDSEYEDSDFDTSDEE---YDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D E+E + + +E +D SE++E E D+EEE E+E EE +
Sbjct: 39 DDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 41.2 bits (97), Expect = 0.001
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 461 EEEEEEEEDEE-----EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EEE EE+E EEEE++EE E EEEEE EE +++ S + +
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESD 69
Score = 37.7 bits (88), Expect = 0.012
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEE-----DEEEEEEEEEGEEEETE 254
E+ D DEE++ EEEEEEE D+ E++E E +EEE E
Sbjct: 36 EEED----DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGE 75
Score = 37.7 bits (88), Expect = 0.014
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 208 SSNGDSEYE-DSDFDTS-DEEYDSSEEEEEEEDEEEEEEEE 246
+ E E DSDFD S D+E +S +EEE E++ + EE +
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 37.0 bits (86), Expect = 0.021
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
+ E E+ +F + + EEEE+DEE E EEEE EEE S
Sbjct: 19 EEELEEDEFFWTYLLF-----EEEEDDEEFEIEEEEEEEEVDSDFDDS 61
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 52.4 bits (126), Expect = 8e-07
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ + + ++ E D EEEE+EEE+EEE+E+E +E ++EE EE++ E+ + N
Sbjct: 376 FSALEIEDANTERDD-EEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGN 433
Score = 47.8 bits (114), Expect = 2e-05
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E ED++ + DEE + EEEEEE+EDE +E ++EE EE++ + E +SS
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSL 436
Query: 501 A---KNDPQMVT 509
A KND V
Sbjct: 437 AVGYKNDRSYVV 448
Score = 45.9 bits (109), Expect = 8e-05
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
W N + + D D+ E E+ + E ++EEEE+EEEEEEE+ +E ++
Sbjct: 353 WETLNKQK-WTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKE 411
Query: 496 ASSSTAKNDP 505
S +
Sbjct: 412 HSDDEEFEED 421
Score = 44.0 bits (104), Expect = 3e-04
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE---------EEGEEEETETASSSTAKN 263
+ + + ++ E D EEE+EEE+EEE+E+E EE EE++ E+ + N
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGN 433
Score = 40.9 bits (96), Expect = 0.003
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 207 KSSNGDSEY-EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
K+ + +Y D+ E+ ++ ++EEEEDEEEEEEE+E E E + + D
Sbjct: 363 KAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEED 421
Score = 29.7 bits (67), Expect = 7.0
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 22/101 (21%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCL 516
Y+ E E +EEED E++E + + +E+E I L
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDEW---------------------VFLIDESL 103
Query: 517 MIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDI 557
V + GG + W D + +G F F+ S++ D+
Sbjct: 104 RFRVEWRKGGDATLA-WRDLSGDEGDKFEFVIDSSVSLSDV 143
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 52.0 bits (125), Expect = 9e-07
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ +++EEEE+++EEEEEEEEE EE E EEG
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 47.4 bits (113), Expect = 2e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+++EE+E+E+EEEEEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 46.6 bits (111), Expect = 4e-05
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E++DEEEE+E+EEEEEEEEE E E E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 46.6 bits (111), Expect = 4e-05
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+++E+EE+E+EEEEEEEEE EE EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 46.2 bits (110), Expect = 5e-05
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+++EEE++E+EEEEEEEEE EE E E
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 45.1 bits (107), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ E EEE+E+EE+EEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 44.3 bits (105), Expect = 2e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E ++EEEE+E+EEEEEEEEE EE E E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 41.6 bits (98), Expect = 0.002
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ +++EEEE E+EEEEEEE E EE E
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPE 369
Score = 41.2 bits (97), Expect = 0.002
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETET 255
+EEEE+EDEEEEEEEEE EE E E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 40.4 bits (95), Expect = 0.003
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
E+ D EE+E+EE+EEEEEE EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 39.3 bits (92), Expect = 0.008
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ E EEE+E+E+EEEEEEE E E E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 38.9 bits (91), Expect = 0.009
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E EEEE+EEE E +EE+E EEEEE E EE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 38.9 bits (91), Expect = 0.009
Identities = 25/41 (60%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG---EEEET 493
E EEEEEEEE E +EE+E EEEEEEE E EEE T
Sbjct: 166 ELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGT 206
Score = 38.1 bits (89), Expect = 0.016
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
+E + E+EEEEEE+EE EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.7 bits (88), Expect = 0.023
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+ ++ + +E+EEEEE+EEE EE E EE
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.7 bits (88), Expect = 0.023
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE+EEEEE E +EE+E EEE EEE E
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 37.3 bits (87), Expect = 0.026
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE+EEEEEEEE E +E EE + E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEV 316
Score = 37.3 bits (87), Expect = 0.027
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+EE EEEEEEE+E EE E EEG
Sbjct: 349 EEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.3 bits (87), Expect = 0.027
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+ ++ + +E+EEEE+EEEE EE E EE
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 37.0 bits (86), Expect = 0.038
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E E E E+EEEEEE E +EE+E EE EEEE E
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 36.6 bits (85), Expect = 0.044
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
EEEEEE+EEEE E +E EE + EG E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 36.6 bits (85), Expect = 0.047
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EEEE+EEEEEE E +E EE + E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEV 316
Score = 36.6 bits (85), Expect = 0.049
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEEEE+EEEEE E +E EE + E E A S
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADS 322
Score = 36.6 bits (85), Expect = 0.050
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EEEEEEE+EEE E +E EE + E E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELAD 321
Score = 36.2 bits (84), Expect = 0.066
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
Y EEEEEEEE+E E +E EE + E E E
Sbjct: 285 YQLEEEEEEEEEEEPAERDELEENPDFEGLEVRE 318
Score = 36.2 bits (84), Expect = 0.067
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ +EE + E E +EEDE EEEEEEE EE +EEEG
Sbjct: 166 ELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEG 205
Score = 36.2 bits (84), Expect = 0.069
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
++ + E+E+EEE+EEEEE EE EE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 36.2 bits (84), Expect = 0.070
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EEE+EEEEEEE E +E EE E + + N
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDN 325
Score = 35.8 bits (83), Expect = 0.084
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 173 YLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEE 232
Y +F LA+ L + + +S V+ K LG D+ ++ E EE
Sbjct: 129 YRIF----LALK-QLAESKPLSTVRFWGKILGT-----------QKDYYVAEVELREGEE 172
Query: 233 EEEEEDEEEEEEEEEGEEEETET 255
EEEEE+ E +EE+EGEEEE E
Sbjct: 173 EEEEEEVGEADEEDEGEEEEEEE 195
Score = 35.8 bits (83), Expect = 0.088
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEEEEEEE+EE E +E EE + E E ++ +
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDN 325
Score = 34.7 bits (80), Expect = 0.19
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 36/77 (46%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEE----------------------------------- 478
+EE + EEEE E DE EE + E
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQK 347
Query: 479 -EEEEEEEEEGEEEETE 494
EEEE+E+EE EEEE E
Sbjct: 348 DEEEEQEDEEEEEEEEE 364
Score = 34.7 bits (80), Expect = 0.22
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
D +E+ D EEEEEEE +E E EE
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.5 bits (77), Expect = 0.44
Identities = 19/38 (50%), Positives = 21/38 (55%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E E E EEEEEEEE E +EE+ EEE E K
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPK 201
Score = 33.5 bits (77), Expect = 0.48
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
D +E+ D EEEEEEE EE E EE
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 32.3 bits (74), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+E + E+EEEEE+EEE EE E E
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 31.6 bits (72), Expect = 1.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
E EE+EEEEE E EE+E E + P
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVP 200
Score = 31.6 bits (72), Expect = 2.1
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+EE + E +EE+E EEEEEEE EE +EEE G
Sbjct: 173 EEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTG 207
Score = 31.2 bits (71), Expect = 2.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 473 EEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E EEEEEEEE E EE+E E + P
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVP 200
Score = 30.4 bits (69), Expect = 3.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGEEEETET 255
+ EEEEEEE E +E EE + E E
Sbjct: 289 EEEEEEEEEEPAERDELEENPDFEGLEV 316
Score = 30.4 bits (69), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+EE + EEE E DE EE + EG E
Sbjct: 289 EEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 30.0 bits (68), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E E E EEEEEEEE E +EE+ +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 29.6 bits (67), Expect = 6.3
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 232 EEEEEEDEEEEEEEEEGEEEE 252
EEEEE+EEEEE E E EE
Sbjct: 287 LEEEEEEEEEEEPAERDELEE 307
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 51.5 bits (123), Expect = 1e-06
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEE-----EEDEEEEEEEEEEEEEEEEEEGEEEETET 495
GD E + D+ SD ++ EE E E + E E++E+ EE EEE+ EEE +
Sbjct: 277 GDDEGREEDY-ISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLS 335
Query: 496 ASSSTAKND 504
K
Sbjct: 336 KKGKKLKKL 344
Score = 43.4 bits (102), Expect = 4e-04
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEE---------------DEEEEEEEEEGEEEE 252
S +GD E + D+ SD ++ EE E+ ++ EE EEE+ EEE
Sbjct: 274 SDDGDDEGREEDY-ISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Query: 253 TETASSSTAKND 264
+ K
Sbjct: 333 GLSKKGKKLKKL 344
Score = 43.0 bits (101), Expect = 5e-04
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + +D D + +E+Y S + +E E++ E + E E+ E+ E
Sbjct: 271 EYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEES 323
Score = 43.0 bits (101), Expect = 5e-04
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 437 NARNGDSEYEDS----DFDTSDEEYDSSEEEEEEEE------DEEEEEEEEEEEEEEEEE 486
A+N +D D +EYDS + ++E E + EE E++ E
Sbjct: 248 LAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPE 307
Query: 487 EGEEEETETASSSTAKND 504
+ E E S +
Sbjct: 308 IPAKPEIEQDEDSEESEE 325
Score = 39.2 bits (91), Expect = 0.009
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 425 RRSSAMNHNRRWN---ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
RR N + A+NG + + D D +T E+ ++ + +D E ++E++ +E
Sbjct: 170 RRKKTANGFQLMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDES 229
Query: 482 EEEEEEGEEEETETASSSTAKN 503
++ E+G+EE+++ AKN
Sbjct: 230 DKGGEDGDEEKSKKKKKKLAKN 251
Score = 37.6 bits (87), Expect = 0.023
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 21/84 (25%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEE-----------------EDEEEEEEEEEEEEEEEE 485
+ E D D DE D E+ +EE +D++ + +++ +E +
Sbjct: 216 KDLEGDDEDDGDES-DKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDS 274
Query: 486 EEGEEEETE---TASSSTAKNDPQ 506
++G++E E + SS + NDP+
Sbjct: 275 DDGDDEGREEDYISDSSASGNDPE 298
Score = 36.1 bits (83), Expect = 0.077
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE--EEEEGEEEETETASSSTAKND 264
+ + +D D + +E+Y S + EE E+ E + E E S +
Sbjct: 271 EYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEE 325
Score = 35.7 bits (82), Expect = 0.11
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ + SEE EEE+ +EE ++ ++ ++ + + + + + S +D
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDD 364
Score = 34.9 bits (80), Expect = 0.18
Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEE--EEEEEEGEEEETETASSSTAKND 504
+ E D EE EEE++EEE ++ ++ + + ++ ++ ++ S + +
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDS 365
Score = 32.2 bits (73), Expect = 1.1
Identities = 7/70 (10%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE----------EEEEEEEEEEEGEEE 491
+ + ++ +S EE+ EEE ++ ++ ++++ + ++ ++
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDS 365
Query: 492 ETETASSSTA 501
+ + S +
Sbjct: 366 DIDGEDSVSL 375
Score = 32.2 bits (73), Expect = 1.2
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 23/84 (27%)
Query: 206 IKSSNGDSEYEDSDFDTSDEE--------------------YDSSEEEEEEEDEEEEEEE 245
IK GD E + + D E+ D + + +D+ +E +
Sbjct: 215 IKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDS 274
Query: 246 EEGEEEETE---TASSSTAKNDPQ 266
++G++E E + SS + NDP+
Sbjct: 275 DDGDDEGREEDYISDSSASGNDPE 298
Score = 30.7 bits (69), Expect = 3.4
Identities = 9/65 (13%), Positives = 33/65 (50%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + E+S+ + ++EE S++ ++ ++ + ++ ++++ + ++ + + S S
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLV 376
Query: 502 KNDPQ 506
Q
Sbjct: 377 TAKKQ 381
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 48.2 bits (115), Expect = 2e-06
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
E SS++EEEE E+E +E E+E+ E + E E+++ E T K P+
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 45.1 bits (107), Expect = 2e-05
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+SD+E + +EEE +E ++E+ E + E +E+++ E + +TE T P+
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 37.4 bits (87), Expect = 0.008
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
SS ++EEEE EEE +E E E+ S K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREV 129
Score = 37.0 bits (86), Expect = 0.012
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE---ETETASSSTAKNDPQMVTVPIT 273
+SD+E + +EEE +E E+E+ E + E + + E T K P+
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 50.2 bits (120), Expect = 2e-06
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 442 DSE-YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
DSE ED D DE+ D EEEE D E+ + EE E GE E E ++ T
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEME---SGEMEAAEASADDT 276
Query: 501 AKND 504
+D
Sbjct: 277 PDSD 280
Score = 48.7 bits (116), Expect = 4e-06
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE-EEEEEEEEEEEEEEEGEEEETETASSS 499
GD D DE+ +E++++ E+EE + E+ + EE E E E A +S
Sbjct: 213 GDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEAS 272
Query: 500 T 500
Sbjct: 273 A 273
Score = 44.4 bits (105), Expect = 1e-04
Identities = 18/49 (36%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
Query: 458 DSSEE--EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D +EE +E E D E+ E+E++ +E+E++++GEEEE+ ++ S + +D
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 44.0 bits (104), Expect = 1e-04
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEE-------EEDEEEEEEEEEGEEEE 252
A+ LG S + ED D DE+ D EEEE E+ + EE E GE E
Sbjct: 209 AEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEA 268
Query: 253 TETASSSTAKND 264
E ++ T +D
Sbjct: 269 AEASADDTPDSD 280
Score = 44.0 bits (104), Expect = 2e-04
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
+ E SE+ E+E++ +E+E++++ EEEE + E+++ +S + +
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEA 271
Score = 42.1 bits (99), Expect = 7e-04
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE E + E++E+E++ +E+E++++ EEE + S A ++
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSE 259
Score = 41.3 bits (97), Expect = 0.001
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ D + +E E + ++ E+E++ +E+E++++ E EE + + S
Sbjct: 204 SSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLS 251
Score = 39.8 bits (93), Expect = 0.004
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 439 RNGDSEYEDSDFDTSDEE---YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ D ED D D +EE S E+ + EE E E E E ++ + ++
Sbjct: 225 EDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
Score = 38.3 bits (89), Expect = 0.012
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 190 EEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSS------EEEEEEEDEEEEE 243
+ + +A A+ + + SS +E E D S + D+ E+E++++ EEEE
Sbjct: 186 AACVDDQQAFARVVRDMLSSMDMAE-ELGDEPESADSEDNEDEDDPKEDEDDDQGEEEES 244
Query: 244 EEEEGEEEETETASSSTAKNDPQMVTV 270
+ E+++ +S + +
Sbjct: 245 GSSDSLSEDSDASSEEMESGEMEAAEA 271
Score = 30.6 bits (69), Expect = 2.7
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
G+ E S D+ E+ D+S EE E + E E + + +
Sbjct: 236 DDQGEEEESGSS-DSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 49.0 bits (117), Expect = 2e-06
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E E D + E D +E E +EED+ +EE+ E EE E+EE + EE+ K+
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Score = 42.8 bits (101), Expect = 3e-04
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + + +E+ E+ E EE ++EE E+ EE E + EE ++E +
Sbjct: 15 EDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 42.4 bits (100), Expect = 3e-04
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
A++ + E + + + EE EE+ E EE E+EE E+ EE E + E ++E
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
Query: 498 SSTAK 502
K
Sbjct: 68 EENKK 72
Score = 42.4 bits (100), Expect = 3e-04
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E + + + E E++ +E E +EE++ +EE+ E EE E +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEE 50
Score = 42.0 bits (99), Expect = 4e-04
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEE-EEEEEEEGEEEETETASSSTAKND 504
E+ + E EED +E E +EE+ +EE+ E EE E E + +++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 41.7 bits (98), Expect = 7e-04
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ + E EE+ E E +EE++ +EE+ E E E+E S +
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEV 54
Score = 39.4 bits (92), Expect = 0.004
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E E D + E D +E E +E+++ +EE+ E EE E E + +++
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 35.5 bits (82), Expect = 0.054
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D EE + E E+ EE E + EE ++E + +EE ++ E E
Sbjct: 29 GKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 35.5 bits (82), Expect = 0.063
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE----EEEEEGEEEETET 495
+++ ED + E + +EE E+ +E E + EE ++E +EE + E E E
Sbjct: 20 ENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEA 79
Score = 34.3 bits (79), Expect = 0.14
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+++ ED + E + +EE E+ EE E + E ++E K
Sbjct: 20 ENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Score = 34.0 bits (78), Expect = 0.18
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
E+ ++ + + +EE+ E EE E+EE + EE+ K+
Sbjct: 10 HENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Score = 32.0 bits (73), Expect = 0.74
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ E+ D E++ E+EE ED EE E + E ++
Sbjct: 17 CCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Score = 31.6 bits (72), Expect = 1.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ + E + + + EE EE+ E E+ E+EE E+ EE
Sbjct: 10 HENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 30.9 bits (70), Expect = 1.8
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ E + + EE EE E + EE ++E + +EE ++ E E E
Sbjct: 24 KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEAL 80
Score = 30.5 bits (69), Expect = 3.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
AKH + + ++E ++ D +E+ + E E+EE E+ EE E EE + +
Sbjct: 8 AKHENMEEDCCKENENKEEDKG-KEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKL 66
Query: 260 TAKN 263
+N
Sbjct: 67 KEEN 70
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 48.1 bits (115), Expect = 2e-06
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 439 RNGDSE----YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+SE ED + DE+ +SS+EEE + D+E++EE + EEE+ EEE
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 47.8 bits (114), Expect = 4e-06
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+S+ SD+ + E EE+E+DE +EEE + ++E++EE + EE +
Sbjct: 1 SGSESE---SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQ 48
Score = 47.8 bits (114), Expect = 4e-06
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
SE ++ EE++E EE+E++E +EEE + ++E + S S
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDS 44
Score = 42.4 bits (100), Expect = 2e-04
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
SE E ++ E++EE EE+E++E +EEE + + E S ++ + VT
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQ 54
Score = 42.4 bits (100), Expect = 2e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 451 DTSDEEYDSSEEEEE--EEEDEEEEEEEEEEEEEEEEEEGE---EEETETASSSTAKNDP 505
S+ E D EE+EE EE++++E +EEE + ++E++ E EEE + + DP
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60
Query: 506 QM 507
+
Sbjct: 61 EA 62
Score = 42.0 bits (99), Expect = 3e-04
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+SD DEE +E++E ++EE + ++E++EE + EE + T
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52
Score = 41.6 bits (98), Expect = 4e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
S D ED + DE+ +SS+EEE + ++E++EE + EEE+
Sbjct: 4 ESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQ 48
Score = 41.6 bits (98), Expect = 4e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
ED D ++SDEE ++E++EE + EEE+ +EEE + E E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
Score = 40.8 bits (96), Expect = 7e-04
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ S+ E+ D +++ +S EEE+ +EEE + E E E + E
Sbjct: 23 DESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 40.4 bits (95), Expect = 8e-04
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE---EEEEEGEEE 491
E ED + +E +E++EE + EEE+ +EEE E E E + E
Sbjct: 17 PEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 39.7 bits (93), Expect = 0.002
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+S+ D +E+ + EE+E++E +EEE + +E++ E+ S
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDS 44
Score = 37.4 bits (87), Expect = 0.010
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG--EEEETETASSSTAKNDP 265
S + + + + EE + E +EEE + ++E++E EEE + + DP
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDP 60
Query: 266 QM 267
+
Sbjct: 61 EA 62
Score = 34.3 bits (79), Expect = 0.12
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+S E+ DE+ + S+ EEE+ +EEE + E E
Sbjct: 23 DESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEA 64
Score = 33.5 bits (77), Expect = 0.21
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
SS+ + D +++ +S EEE+ +EEE + E E
Sbjct: 25 SSDEEEVDLPDD----EQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
Score = 31.2 bits (71), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE---EEETE 254
D + E SD + D D +EE + E+E+ +E E E E E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 50.8 bits (121), Expect = 3e-06
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
SEYE S D SDE D EE +E ED E+E E + +EE+ E+ +E E++ A S
Sbjct: 939 SEYEASSDDESDET-DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDS 994
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE---GEEEE 492
W+ S+ E + + EY++S ++E +E DE+EE +E E+ E+E E +EE+
Sbjct: 920 WSFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEED 979
Query: 493 TE 494
E
Sbjct: 980 GE 981
Score = 41.9 bits (98), Expect = 0.001
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
SEYE S D SDE + E +E ED E+E E + +EE
Sbjct: 939 SEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEE 978
Score = 41.2 bits (96), Expect = 0.002
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 453 SDEEYDSSEEEEEEEE---DEEEEEEEEEEEEEEEEEEGEEEETETASS 498
SD+E D SEEE E E D+E +E +E+EE +E E+ E+E+E SS
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSS 975
Score = 38.5 bits (89), Expect = 0.018
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
SD ++ + E + SE E +++ +E +E+EE +E E+ +E E ++
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDS 974
Score = 36.5 bits (84), Expect = 0.062
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
D E ++S D S++E ++ +EE+ ED +E E + +
Sbjct: 955 DEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 35.8 bits (82), Expect = 0.12
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 205 IIKSSNGD--SEYED---------SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
I+KS D S +ED SD ++ + E + SE E +DE +E +E+E +E +
Sbjct: 903 IMKSIMKDPISFFEDGGWSFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDESS 962
Query: 254 ETASSSTAKND 264
E S ++ND
Sbjct: 963 EDLSEDESEND 973
Score = 35.0 bits (80), Expect = 0.17
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E +E EEE E E ++E +E +E+E +E +E S ++ND
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESEND 973
Score = 34.6 bits (79), Expect = 0.26
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 212 DSEYEDSDFDTS-DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
D E ++S+ + S E E +E +EDEE +E E+ E+E+E SS
Sbjct: 928 DDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSS 975
Score = 34.2 bits (78), Expect = 0.37
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
++ D E ++S D S++E ++ +EE+ ++ +E E + +
Sbjct: 951 ETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 46.9 bits (111), Expect = 3e-06
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G +E + T+ E E + +ED +E E + +E +EEEE +E ETA +
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEAD 115
Query: 501 AKND 504
A+ +
Sbjct: 116 AEAE 119
Score = 45.7 bits (108), Expect = 7e-06
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 408 PRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEE 467
RDL+ T ++A A ++ D D D + E + E +EEEE
Sbjct: 47 ARDLEWTEAGRAEKGPAAAATAAAEA----AEEAEAADADEDADEAAEADAADEADEEEE 102
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETETA 496
DE +E +E + E EE + EE+E A
Sbjct: 103 TDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 41.1 bits (96), Expect = 3e-04
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE-----EEEEEEEEEEGEEEETETASSST 500
E ++ + + + ++E E + +E +EEEE +E +E + E EE + E +
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Query: 501 A 501
A
Sbjct: 131 A 131
Score = 39.9 bits (93), Expect = 7e-04
Identities = 13/66 (19%), Positives = 31/66 (46%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ + EE ++++ +E+ +E E + +E +EEEE +E +E E +
Sbjct: 58 AEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
Query: 499 STAKND 504
+ ++
Sbjct: 118 AEEADE 123
Score = 38.8 bits (90), Expect = 0.002
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ + + E ++E+ +E + + +E +EEEE +E + +E + +
Sbjct: 62 PAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEA 121
Query: 501 AKNDPQ 506
+ + +
Sbjct: 122 DEEEDE 127
Score = 38.0 bits (88), Expect = 0.004
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E ++ + + + ++E E + +E +EEEE +E ETA + A+ +
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAE 119
Score = 38.0 bits (88), Expect = 0.004
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
D E D +DEE ++ E +E DE + E EE EEE+ E
Sbjct: 85 ADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEA 129
Score = 36.5 bits (84), Expect = 0.014
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ E + +E + +ED +E E + +E + E +
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 35.3 bits (81), Expect = 0.035
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+E + +D +EE D + +E +E + E EE +E E+EE E
Sbjct: 89 AEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 34.5 bits (79), Expect = 0.056
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
++ E+ E EE E + +E +E E ++ A + +
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEE 102
Score = 34.5 bits (79), Expect = 0.062
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+N D E D + ++ E EE E + +E+ +E E +
Sbjct: 39 KNYDLGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAA 94
Score = 34.2 bits (78), Expect = 0.081
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
ED+D + ++ + +EEEE DE +E +E + E E
Sbjct: 79 ADADEDAD-EAAEADAADEADEEEETDEAVDETADEADAEAEEAD 122
Score = 33.8 bits (77), Expect = 0.095
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+ E ++ D +DE D EE +E DE +E + E EE + E + A
Sbjct: 82 DEDADEAAEADAADEA-DEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 33.4 bits (76), Expect = 0.13
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E + E EE E + +E+ +E E + + T +
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 32.2 bits (73), Expect = 0.32
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ + + E ++E+ +E E + +E + EEE E + + D +
Sbjct: 62 PAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
Score = 32.2 bits (73), Expect = 0.36
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+E E+ E EE E + +E+ E A + A
Sbjct: 53 TEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAA 94
Score = 32.2 bits (73), Expect = 0.37
Identities = 11/54 (20%), Positives = 27/54 (50%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
++ E D ++ +++E + +E +EEEE +E +E E + + ++
Sbjct: 70 AEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADE 123
Score = 31.8 bits (72), Expect = 0.49
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
G + + + ++E + +E+ +E E + +E EEEET+ A TA
Sbjct: 61 GPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 31.5 bits (71), Expect = 0.66
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
++ E EE E + +E+ E E + A
Sbjct: 60 KGPAAAATAAAEAAEEAEAADADEDADEAAEADAA 94
Score = 31.5 bits (71), Expect = 0.68
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
D++ + + +D ++ EEEE +E +E +E + E EE + A
Sbjct: 80 DADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEA 129
Score = 31.5 bits (71), Expect = 0.73
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
E + + E EE E + +E+ + E + + + V
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVD 108
Score = 30.7 bits (69), Expect = 1.2
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E E +D D +E ++ +E ++EEE +E + +E + + + + +
Sbjct: 73 AEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDE 127
Score = 29.9 bits (67), Expect = 1.9
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
G +E + T+ E E + +++ +E E + +E E + A
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEA 106
Score = 28.8 bits (64), Expect = 5.9
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
DS+ E ++D E D E E E EE E + +E ++
Sbjct: 34 DSKCE-KNYDLGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEAD 92
Query: 502 KND 504
D
Sbjct: 93 AAD 95
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 50.4 bits (120), Expect = 4e-06
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
M +R AR+ E+ + D +E+E+E++D+EE++EEEEEEEEE
Sbjct: 123 EIGDLDMIIIKRRRARHLA---EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Query: 484 ------EEEEGEEEETETASSS 499
E+EE E E T S
Sbjct: 180 IKGFDDEDEEDEGGEDFTYEKS 201
Score = 45.8 bits (108), Expect = 1e-04
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
EE S + ++D+E+E+E++++EE++EEEE EEEE + +++
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Score = 43.5 bits (102), Expect = 5e-04
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ D D ++E+E+ED+++EE++EE EEEE E
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 40.0 bits (93), Expect = 0.005
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 192 VISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEE-----EEEE 246
+I + A+HL S D+ D D + DE+ D E++EEEE+EEEE +E+E
Sbjct: 130 IIIKRR-RARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDE 188
Query: 247 EGEEEETETASSS 259
E E E T S
Sbjct: 189 EDEGGEDFTYEKS 201
Score = 39.6 bits (92), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
ED + D E+E+E++D+EE++EEEE EEEE + +++
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Score = 36.9 bits (85), Expect = 0.049
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
RRR+ + N + +D D D D++ + EEEEEEEE+ + ++E+EE+E
Sbjct: 134 RRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGG 193
Query: 484 EEEEGEEEETE 494
E+ E+ E +
Sbjct: 194 EDFTYEKSEVD 204
Score = 36.2 bits (83), Expect = 0.091
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEE---EDEEEEEEEEEEEEEEEEEEGEEEE 492
D + ED D D DEE D EEEEEEE D+E+EE+E E+ E+ E ++ +
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
Score = 30.0 bits (67), Expect = 6.5
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
EE D S + D+++E+E+E+ ++EE +
Sbjct: 141 AEE-DMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEE 176
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 49.8 bits (119), Expect = 4e-06
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 441 GDSEYEDSD-FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D ED+D D D++ D++E+ E E+ E +E EE+E E + EGEE E + A +S
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEAS 283
Score = 47.9 bits (114), Expect = 2e-05
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 411 LQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE 470
+ I+D G ++ ++ + A D ++E D EE+ +EED
Sbjct: 180 WRDEIEDKAGEDLDGLAAEIDDQQ---AFARVVRDMLGSMDMAEETGDDGIEEDADEEDG 236
Query: 471 EE------EEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
++ E+ E EE E +E EE+E E + +
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEAS 283
Score = 46.0 bits (109), Expect = 7e-05
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 18/77 (23%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEE-------------EDEEEEEEEE-----EEEEEE 483
D++ ED D D D DS EE E + E EE E + E+ E +
Sbjct: 230 DADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESD 289
Query: 484 EEEEGEEEETETASSST 500
E +E E E A +T
Sbjct: 290 ESDEDTETPGEDARPAT 306
Score = 43.3 bits (102), Expect = 4e-04
Identities = 13/61 (21%), Positives = 22/61 (36%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 270
GD E+ + ++ E+ E EE E +E EE+E E + +
Sbjct: 223 GDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEA 282
Query: 271 P 271
Sbjct: 283 S 283
Score = 41.0 bits (96), Expect = 0.003
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEE-------DEEEEEEEEEGEEEETETASSST 260
S G E E SD DE + E EE E ++ E +E +E E E A +T
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPAT 306
Score = 37.5 bits (87), Expect = 0.026
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ D + D + EE + S+E EE+E E + E EEGE + E
Sbjct: 236 GDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAE 281
Score = 33.7 bits (77), Expect = 0.39
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEE------EEEEDEEEEEEEEEGEEEETETASSSTAK 262
S G E E+ + + +D E + E + + E DE +E+ E GE+ T + +
Sbjct: 254 SEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPATPFTELME 313
Score = 32.9 bits (75), Expect = 0.72
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 211 GDSEYEDSDFDTSDE------EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
D ++E E D+ EE+ +++ + E+ E G EE + S + +
Sbjct: 207 RVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAE 266
Score = 31.0 bits (70), Expect = 3.0
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 214 EYEDSDFDTSDEEYDSSEEE-EEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E D + +E D +++ + ED E EE EG +E+E + + +
Sbjct: 221 ETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEG-SDESEEDEAEATDGEGE 273
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 48.2 bits (115), Expect = 4e-06
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E +++ E+ +E+E+EE E+E EEE+EE +E E+E E + E
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Query: 497 S 497
Sbjct: 121 E 121
Score = 47.8 bits (114), Expect = 5e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E + ++E +SE++E++ + E+E+EE EEE EEE+EE +E E ET + +
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Query: 502 K 502
Sbjct: 117 N 117
Score = 44.7 bits (106), Expect = 6e-05
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E ++ + + ++ + E++ + E+++EE EEE EEE+EE +E E+E E S+
Sbjct: 62 IEEVKEEEKEAANS--EDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVE 119
Query: 502 K 502
K
Sbjct: 120 K 120
Score = 44.7 bits (106), Expect = 6e-05
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE----ETETA 496
D + + +EE +++ E++E++ + E+E+EE EEE EEE+E + ETE
Sbjct: 54 SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEK 113
Query: 497 SSSTAK 502
+ S +
Sbjct: 114 TESNVE 119
Score = 44.3 bits (105), Expect = 7e-05
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D D E + E EEE EE++EE +E E+E EE+ E E+E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEIT 123
Score = 42.8 bits (101), Expect = 3e-04
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEE---EEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
A +++ D EE E+E E++ED+ + E+E+EE EEE EEE EE
Sbjct: 45 AADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Query: 494 ETASSSTAKNDPQ 506
E + K +
Sbjct: 105 ENEKETEEKTESN 117
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ + S+++ D + E+E+EE EEE EEE+EE +E E+E EE+
Sbjct: 68 EEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 39.7 bits (93), Expect = 0.003
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE-EEEEEEEEGEEEETETASSSTAKNDP 505
SD +DE+ +++E E EE +EEE+E E++E++G+ E+ + S + +
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 506 Q 506
+
Sbjct: 100 E 100
Score = 38.9 bits (91), Expect = 0.004
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE-----EEEEEEEEEEEEEGEEEETE 494
+ + + ++ D E E EE EEE+E ++E++ + E+E+E EEE E
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Query: 495 TASSSTAKND 504
++ +
Sbjct: 97 EEDEESSDEN 106
Score = 38.6 bits (90), Expect = 0.005
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ + E ++ + + ++ E + + E+EDEE EEE EE +EE ++ T +
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Query: 267 MVTVPIT 273
V IT
Sbjct: 117 NVEKEIT 123
Score = 38.2 bits (89), Expect = 0.008
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+K ++ + D D E + E EEE E+E+EE +E +E E +T S
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Score = 37.4 bits (87), Expect = 0.013
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 172 LYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSE 231
L + GI ++ + Q + + ++ D + + +EE +++
Sbjct: 16 LNIAIGIVVVLIIIVAYQL-FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAAN 74
Query: 232 EEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
E++E+ + E+E+EE EEE E S+ +N
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Score = 36.3 bits (84), Expect = 0.037
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
D + + + S+EE + +EE +E+E+E EE+ E E+ T S
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 35.5 bits (82), Expect = 0.055
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
F S ++ +E+E ++ +++E E EE +EEE+E E+ E + +++
Sbjct: 35 FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDE 89
Score = 33.6 bits (77), Expect = 0.25
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ ++ + E+E ++ D++E E EE +EEE E A+S ++
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGD 83
Score = 33.6 bits (77), Expect = 0.30
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ +SE E+ + D + + E EE+ E + E+E + E+ G T + S
Sbjct: 88 DEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPVGTEQTGPHAMTFDSGS 146
Score = 32.0 bits (73), Expect = 0.89
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ E E+S+ + +E+ +SS+E E+E E++ E E+E + G E+ A +
Sbjct: 85 EKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPVGTEQTGPHAMT 141
Score = 31.6 bits (72), Expect = 0.99
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEE--EEEEEEGEEEETETASSSTAKND 264
SD +DE+ +++E + EE EEE+E E+ E + +++
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDE 89
Score = 30.9 bits (70), Expect = 2.1
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S+ + E + D+E EE +EEE E E++E + + + S +N+
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Score = 30.9 bits (70), Expect = 2.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
SD+ +E ++ +D+E E EE EEE+ S
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDA 84
Score = 30.9 bits (70), Expect = 2.3
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
S ++ DE+E ++ +++E E EE EEE+ S
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDA 84
Score = 30.5 bits (69), Expect = 3.0
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
D EE E+E +++E++ + E E+EE+E + +
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESS 103
Score = 29.7 bits (67), Expect = 4.5
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEE-DEEEEEEEEE 247
+EE + + G + + +SE E+ + D + + E EE+ E + E+E
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Query: 248 GEEEETETASSSTAKND 264
+ TE D
Sbjct: 127 WKPVGTEQTGPHAMTFD 143
Score = 28.9 bits (65), Expect = 7.8
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE-------EEEGEEEETETASSSTAK 262
+ + + ++ D E E EE +EEE+E E++G+ E+ + S +
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Query: 263 NDPQ 266
+ +
Sbjct: 97 EEDE 100
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 45.0 bits (107), Expect = 7e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ EEEE+EEEEEEEEEEE EEE G
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 45.0 bits (107), Expect = 8e-06
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
++ EE+EEEEEEEEEEEEE EEE
Sbjct: 68 AAAAAAAAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 41.6 bits (98), Expect = 1e-04
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEE 492
EEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEE 491
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEEEEEEEEEEEE EE E E +
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
EEEE+EEEEEEEEE E EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
Score = 39.6 bits (93), Expect = 6e-04
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEE 490
EEEEEEEEEEEEEEEE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 38.9 bits (91), Expect = 0.001
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASS 258
++ EEE+EEEEEEEEE EE E E +
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 36.6 bits (85), Expect = 0.007
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETAS 257
++ E+EEEEEEEEE EEEE+E +
Sbjct: 68 AAAAAAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 34.6 bits (80), Expect = 0.029
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGE 249
+ EEEEEEE+EEEE EEE
Sbjct: 74 AAEEEEEEEEEEEEEEEESEEEAMA 98
Score = 34.2 bits (79), Expect = 0.051
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEE 476
+ EEEEEEEE+EEE EEE
Sbjct: 74 AAEEEEEEEEEEEEEEEESEEE 95
Score = 31.9 bits (73), Expect = 0.27
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
EE + EEEEEEE+EE EEE G
Sbjct: 76 EEEEEEEEEEEEEEEESEEEAMAG 99
Score = 28.5 bits (64), Expect = 4.6
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 454 DEEYDSSEEEEEEEEDEEE 472
+EE + EEEEEEEE EEE
Sbjct: 77 EEEEEEEEEEEEEEESEEE 95
Score = 28.1 bits (63), Expect = 7.1
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 224 DEEYDSSEEEEEEEDEEEE 242
+EE + EEEEEEE+ EEE
Sbjct: 77 EEEEEEEEEEEEEEESEEE 95
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 44.9 bits (107), Expect = 9e-06
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
EE+ EEEEEEEE+EE EEE G
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 44.6 bits (106), Expect = 1e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+E++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
E+++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 42.2 bits (100), Expect = 7e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 4e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE++EEEEEEEE+EE E E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 39.9 bits (94), Expect = 5e-04
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASS 498
EE++EEEEEEEE EE E E A+
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EE++EEEEEEE +EE E A++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
EE+ EEEEEEEE+ E EE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEE 95
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASS 258
EE +EEEEEEEE EE E E A+
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 36.5 bits (85), Expect = 0.008
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
E+++EEEEEEE +EE E A++
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 35.3 bits (82), Expect = 0.020
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
+E++EEEEEE E+EE+E +++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.9 bits (81), Expect = 0.030
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
E EEEEEEE EE EEE G
Sbjct: 77 AEEKKEEEEEEEEKEESEEEAAAG 100
Score = 34.5 bits (80), Expect = 0.033
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEE 479
+ +EEEEEEE++EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.5 bits (80), Expect = 0.040
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGE 249
+ +EEEEEE+E+EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 48.1 bits (115), Expect = 1e-05
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
++ D + E+ + EEE++ E E+E+EE+E+EEEEE+++EG++
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 47.0 bits (112), Expect = 2e-05
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D D E + EEEEEED+ E E+E+EE+E+EEEE +++E +
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 46.6 bits (111), Expect = 3e-05
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D + +E + +EEEEEE++ E E+E+EE+E+EEEEE+ +E +
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 43.9 bits (104), Expect = 2e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE EEEEEE+D E E+E+EE+E+EEEEE ++E +
Sbjct: 280 EELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 43.5 bits (103), Expect = 2e-04
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
G E + + EE + ++ E E+++EE+E+EEEEE+++E ++
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 43.1 bits (102), Expect = 4e-04
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
GD E + + ++EE + + E E+EDEE+E+EEEEE+++E ++
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 42.3 bits (100), Expect = 6e-04
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E D E E+ EE+EEE++ E E+E+EE+E+ EEEE
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 40.8 bits (96), Expect = 0.002
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+EE+ EE E+ EEEEEE++ E E+ +EE+ +
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDED 307
Score = 39.6 bits (93), Expect = 0.005
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 190 EEVISNVKAIAKHLGIIKSSNGDSEYEDSDFD---TSDEEYDSSEEEEEEEDEEEEEEEE 246
+EVI K G + GD E + + +EE D SE E+E+E++E+EEEEE
Sbjct: 253 KEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Query: 247 EGEEEE 252
+ +E +
Sbjct: 313 DDDEGD 318
Score = 39.6 bits (93), Expect = 0.005
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
D + EE E+ EEEEEE++ E E+E+EE E+EE E
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 39.6 bits (93), Expect = 0.005
Identities = 14/30 (46%), Positives = 25/30 (83%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+ D+ +S +E+EE+EDEEEEE+++EG++
Sbjct: 290 EEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 38.9 bits (91), Expect = 0.007
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 196 VKAIAKHLGIIKSSNGDSEY---------EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
++AI + +IK GD + ++ D + E+ + EEE++ + E+E+EE+
Sbjct: 249 LEAIKE---VIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEED 305
Query: 247 EGEEEETE 254
E EEEE +
Sbjct: 306 EDEEEEED 313
Score = 38.9 bits (91), Expect = 0.008
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ EE E EEEEEE++ E E+E+E +E+E E
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEE 310
Score = 38.9 bits (91), Expect = 0.008
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+EE+ E+ E+ EEEEEE++ E E E+EE E
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEE 309
Score = 35.0 bits (81), Expect = 0.12
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
E E+ + D S+ E D EE+E+EE+EE+++E ++
Sbjct: 287 EEEEEEDDYSESE-DEDEEDEDEEEEEDDDEGDK 319
Score = 34.3 bits (79), Expect = 0.25
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+EE+ +E E+ EEEEEE++ E +E+E + +D
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 33.5 bits (77), Expect = 0.41
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
+ E ED ++ DE+ + +EEEEE+D+E ++
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 31.6 bits (72), Expect = 1.5
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEE 242
+ + +Y +S+ ++E D EEEEE++DE ++
Sbjct: 287 EEEEEEDDYSESE---DEDEEDEDEEEEEDDDEGDK 319
Score = 30.8 bits (70), Expect = 2.6
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE 244
+ E E+ D+ S++E + E+EEEEED++E ++
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 30.4 bits (69), Expect = 3.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
DEE E+ EE+EEE++ E +E+E + +D
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 29.6 bits (67), Expect = 6.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEE 471
A + E + S+ + DEE + EEEE+++E ++
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 48.2 bits (115), Expect = 1e-05
Identities = 14/65 (21%), Positives = 23/65 (35%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D E ED+ + + E + E E+ E E+ E EE+ E +
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Query: 502 KNDPQ 506
+ Q
Sbjct: 437 LEEAQ 441
Score = 43.6 bits (103), Expect = 3e-04
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
S+ E+ + + + E E+ E EE+ E E+E +E+E E A
Sbjct: 390 SQREEEE---ALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 43.6 bits (103), Expect = 3e-04
Identities = 19/63 (30%), Positives = 24/63 (38%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+EY+ D E S EEEE + E EE E E+ E EE+ E
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Query: 503 NDP 505
D
Sbjct: 434 EDE 436
Score = 42.5 bits (100), Expect = 8e-04
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
R + + + + E EE+ + E+E E+E+E EE EEE E
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 41.3 bits (97), Expect = 0.002
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E+ EE +E+ E EED E E+E E+E+ EE
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 40.9 bits (96), Expect = 0.002
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E+ E E+E E+E+E EE + EEEE
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 40.2 bits (94), Expect = 0.004
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E D+ E ++E E+E+E EE + EEEE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 38.6 bits (90), Expect = 0.013
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 195 NVKAIAKHLG----IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
NV+ A+ G I S+ D E ED+ + + E + E +E E E+ E E
Sbjct: 356 NVRLAARLTGWKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAE 415
Query: 251 EETE 254
E+
Sbjct: 416 EDAR 419
Score = 35.5 bits (82), Expect = 0.096
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEE--EEEEEEEEEE 487
EE E EDE E+E+E + EEEEE
Sbjct: 411 AERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 35.1 bits (81), Expect = 0.14
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
++E + + + E+E E+++E EE + EEEEE
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 34.4 bits (79), Expect = 0.27
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
++E + + + E+E EDE+E EE + EEEE
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 33.6 bits (77), Expect = 0.41
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
S E ++E ED + E + EEEE + EE E + A+ D
Sbjct: 373 SAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEED 417
Score = 32.4 bits (74), Expect = 0.87
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
DS+E ++E E+ + E + EEEE + E EE +
Sbjct: 372 DSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAE 415
Score = 32.1 bits (73), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+E + + D E+E+E E+ + EEEEE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 31.7 bits (72), Expect = 1.6
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
S+ E+ + + E E+ E +E+ E E+ + P
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Score = 31.3 bits (71), Expect = 2.2
Identities = 9/53 (16%), Positives = 18/53 (33%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ E E + +E EE+ E E E E+ + + + +
Sbjct: 393 EEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 30.9 bits (70), Expect = 2.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
+E + + D E+E+E EE + EEEEE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 30.9 bits (70), Expect = 3.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
D + D + + EEE+ + E EE E E+ E A
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAE 415
Score = 30.1 bits (68), Expect = 5.1
Identities = 11/67 (16%), Positives = 24/67 (35%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
AK +I + + + + E EE+ E E+E E+E+ +
Sbjct: 383 AKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQP 442
Query: 260 TAKNDPQ 266
+ + +
Sbjct: 443 EEEEEAR 449
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 48.6 bits (116), Expect = 1e-05
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ E + +EEEEEE++E++EEEE+ ++EEE +E EE+E + + K
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
Score = 44.4 bits (105), Expect = 2e-04
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E E+E DEEEEEE+EE++EEEE+ +EEE +
Sbjct: 27 VEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE 63
Score = 42.8 bits (101), Expect = 6e-04
Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
DEE + EE+EE++E+EE+ ++EEE +EEEE+E ++++T+ +T + + T PI
Sbjct: 36 PDEEEE--EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPI 93
Score = 41.3 bits (97), Expect = 0.002
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+EE + EE++EEE++ ++EEE EEEE E T K
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKK 76
Score = 41.3 bits (97), Expect = 0.002
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
W + + E D + + EE +EEEE+ D+EEE +EEEE+EE++++ + +ET T
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEE---KKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 39.4 bits (92), Expect = 0.008
Identities = 16/51 (31%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D E E+ + +EE + + ++EEE ++EEE+EE++++ ++ +E E E
Sbjct: 37 DEEEEEEKEEKKEEE-EKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 39.0 bits (91), Expect = 0.010
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+EE EEEDEE E E E EE+ E+ EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 37.4 bits (87), Expect = 0.030
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E+EE EE++EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 37.1 bits (86), Expect = 0.038
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 223 SDEEYDSSEEEEEEEDE---EEEEEEEEGEEEETETASSSTAKN 263
DEE + +EE++EE+E ++EEE +E EE+E + + K
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKE 79
Score = 36.3 bits (84), Expect = 0.060
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
+ E D + + EE EE+ +++EE +EEEE+ E
Sbjct: 32 EKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 36.3 bits (84), Expect = 0.062
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
E E D + +E+ + EEEE+ D+EEE +EEE +EE
Sbjct: 32 EKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 36.3 bits (84), Expect = 0.062
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
D E E+ + +EE ++++EEE ++EEE+EE+++ ++ ET
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 35.9 bits (83), Expect = 0.082
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+E ++E +EEEEEE+EE++EE E+ + +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEK 67
Score = 35.9 bits (83), Expect = 0.089
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
+ E + +EEEEEE EE++EEEE+ ++E E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVD 62
Score = 35.5 bits (82), Expect = 0.10
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETAS 497
DE+EE EEE+EE E E E EE+ E +
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 34.4 bits (79), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+E+EE E+E+EE E E E EE+ E + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.36
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E+EE EEE+EE E E E EE+ E+ + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.38
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D EEE+EE + E E EE+ E+ + EE
Sbjct: 498 DEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 33.6 bits (77), Expect = 0.44
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+EE EEE++E E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 33.2 bits (76), Expect = 0.56
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
DE+ + EE+EE E + E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 32.8 bits (75), Expect = 0.88
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E+EE +EE+EE E E E EE+ + + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 32.0 bits (73), Expect = 1.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
D EE EEE+E+ E E E EE+ E+ + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 32.0 bits (73), Expect = 1.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+EE EEEDEE E E E EE+ E +
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 31.7 bits (72), Expect = 1.5
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 174 LLFGIALLAMSFNLVQEEVISN--VKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSE 231
LL+ ALL F+L + ++ + I L I D D EE D
Sbjct: 462 LLYETALLTSGFSLEDPKAFASRIYRMIKLGLSI-------------DEDEEVEEEDEEA 508
Query: 232 EEEEEEDEEEEEEEEEGEE 250
E E E EE+ E+ + EE
Sbjct: 509 EVETTEPAEEDAEDSKMEE 527
Score = 31.3 bits (71), Expect = 2.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETETASSS 499
+E+EE EEE+EE E E E E + S
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 30.9 bits (70), Expect = 2.8
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 236 EEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 270
+EDEE EEE+EE E E TE A D +M V
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAE--DSKMEEV 528
Score = 30.9 bits (70), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E +EEE+EE+EE++EE E+ + +
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEK 67
Score = 30.1 bits (68), Expect = 4.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E+EE EEE+EE E E EE S
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 30.1 bits (68), Expect = 5.8
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 476 EEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
+E+EE EEE+EE E E TE A D +M V
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAE--DSKMEEV 528
Score = 30.1 bits (68), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
++E E+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 29.7 bits (67), Expect = 6.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASS 258
E+EE EE++EE E E EE S
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 29.7 bits (67), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
+E+EE E+E+EE E E E E + S
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 29.7 bits (67), Expect = 7.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 474 EEEEEEEEEEEEEEGEEEETETASSSTAK 502
+E+EE EEE+EE E E E + +K
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 46.4 bits (111), Expect = 1e-05
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ + SE +EE+ ED+++++E+E+E++EEE + G + E
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPE 78
Score = 44.5 bits (106), Expect = 7e-05
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + ++ E E DEE+ E++++++E+E+E++ EE +
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 43.7 bits (104), Expect = 1e-04
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ E + +EE+ E++++++E+E+E +EEE +
Sbjct: 36 AAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 43.7 bits (104), Expect = 1e-04
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+ E E +EE+ E++++++E E+E+ E + DP+
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP--DPEEA 80
Score = 43.7 bits (104), Expect = 1e-04
Identities = 10/44 (22%), Positives = 28/44 (63%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D + + ++ E E +E++ E++++++E+E+E++EE +
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D + + E + EE+ E+++D++E+E+E++EEE + + EE
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 41.4 bits (98), Expect = 6e-04
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ D + + + E E +EE+ E++++++E+E+E++EEE
Sbjct: 29 FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 39.9 bits (94), Expect = 0.002
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
D + + E + EE+ E++D+++E+E+E+ EEE
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 38.7 bits (91), Expect = 0.006
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ + E E+ E+++D++E+E+E++ EE +
Sbjct: 36 AAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 37.9 bits (89), Expect = 0.010
Identities = 9/38 (23%), Positives = 24/38 (63%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
++ + SE +EE+ +++++++E+E E++E E
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 37.6 bits (88), Expect = 0.013
Identities = 9/46 (19%), Positives = 27/46 (58%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ + ++ +E D ++++++E+++E++EEE + + EE
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 37.2 bits (87), Expect = 0.016
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
+ D + + + E E +EED E++++++E E+E+ E + DP+
Sbjct: 29 FIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP--DPEEA 80
Score = 37.2 bits (87), Expect = 0.016
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 204 GIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
G I + + + ++ +E D ++++++EDE+E++EEE
Sbjct: 28 GFIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 36.8 bits (86), Expect = 0.021
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
N + + S+ + + E++++++EDE+E++EEE + + EE
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 34.9 bits (81), Expect = 0.11
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
++ + + E D + E++++D+E+E+E++E E +
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 31.8 bits (73), Expect = 1.1
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
+SE ++ D + D++ + +E++EEE + + EE
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 29.5 bits (67), Expect = 5.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE 245
E+ D D++ D E++EEE D + EE
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 45.0 bits (107), Expect = 1e-05
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN-DPQMVTVPI 512
+ EEE +DEE+ E E+ E+ E++E EG E T T + D TV +
Sbjct: 77 KLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTV 129
Score = 40.4 bits (95), Expect = 6e-04
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
EEE ++EED E E+ E+ E++E E VTV
Sbjct: 79 LEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTV 129
Score = 38.5 bits (90), Expect = 0.002
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E ++ +EE+ E ED E+ E++E E E EEE
Sbjct: 78 LLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
Score = 38.5 bits (90), Expect = 0.003
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+++ + +E E+ E+ +++E E E + EEE +E+
Sbjct: 82 ENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDED 121
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+E +E + EEE ++EE+ E E+ E+ E++E E T +
Sbjct: 70 KERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 38.1 bits (89), Expect = 0.004
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
D+E D+ E+ E+ ED+E E E + EEE +E++ +T
Sbjct: 84 DDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKT 125
Score = 37.3 bits (87), Expect = 0.006
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
R+ + E E+ D ++ E+ E++E E E + EEE
Sbjct: 61 RKQELEKQLKERKEALKLLEEENDD---EEDAETEDTEDVEDDEWEGFPEPTVTDYEEEY 117
Query: 485 EEEGEEEETETASS 498
+E + + T T
Sbjct: 118 IDEDKYKTTVTVEE 131
Score = 35.8 bits (83), Expect = 0.020
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN-DPQMVTVPI 272
+EE D E+ E E+ E+ E++E EG E T T + D TV +
Sbjct: 79 LEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTV 129
Score = 34.2 bits (79), Expect = 0.083
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ + K L K + E E+ D + ++ E E++E E E + EE E
Sbjct: 63 QELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDE 120
Score = 33.5 bits (77), Expect = 0.13
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDE-EEEEEEE 246
++E+ +K + L +++ N D E + DT D E D E E EEE +
Sbjct: 61 RKQELEKQLKERKEALKLLEEENDDEE-DAETEDTEDVEDDEWEGFPEPTVTDYEEEYID 119
Query: 247 EGEEEETETASS 258
E + + T T
Sbjct: 120 EDKYKTTVTVEE 131
Score = 32.7 bits (75), Expect = 0.28
Identities = 15/69 (21%), Positives = 25/69 (36%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
E+ + K K L D+E ED++ DE E + +EE +E++
Sbjct: 65 LEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Query: 249 EEEETETAS 257
E
Sbjct: 125 TTVTVEELD 133
Score = 32.3 bits (74), Expect = 0.36
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE ++E E++ +E +E + EEE +EE+ ET + ++D
Sbjct: 59 EERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDD 100
Score = 31.9 bits (73), Expect = 0.49
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
E++ +E E + EEE ++EE+ E + E+ E
Sbjct: 66 EKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 31.5 bits (72), Expect = 0.65
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
EE ++E E + +E +E + EEE ++ E+ ETE
Sbjct: 59 EERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVE 98
Score = 31.5 bits (72), Expect = 0.68
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D E + DT D E D E E E + EEE +E++ + EE +
Sbjct: 80 EEENDDEEDAETEDTEDVEDD---EWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELD 133
Score = 30.0 bits (68), Expect = 2.4
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVT 269
+ EE+ ++EE+ E + E+ E
Sbjct: 77 KLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Score = 29.6 bits (67), Expect = 2.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
N D+E ED++ DE E + E+E +E++ + EE +
Sbjct: 83 NDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELD 133
Score = 29.6 bits (67), Expect = 3.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
E E++ +E +E + EEE ++EE+ E E+ E +P +
Sbjct: 64 ELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTD 112
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 44.0 bits (103), Expect = 2e-05
Identities = 13/30 (43%), Positives = 27/30 (90%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
D + DS EEE++++EDEE+++E+++E+++E
Sbjct: 11 DSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 43.2 bits (101), Expect = 3e-05
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E EE+ + D +EEE++++E+EE+++E+ +E++ E S
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPS 45
Score = 43.2 bits (101), Expect = 3e-05
Identities = 13/32 (40%), Positives = 28/32 (87%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E DS + +EEE+D++E+EE+++E+++E+++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 42.8 bits (100), Expect = 5e-05
Identities = 14/36 (38%), Positives = 30/36 (83%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
F +E+ DS +EEE+++DE+EE+++E+++E+++E
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.9 bits (95), Expect = 2e-04
Identities = 13/32 (40%), Positives = 28/32 (87%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
EE S+ +EEE++D+E+EE+++E+++E+++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.5 bits (94), Expect = 3e-04
Identities = 13/41 (31%), Positives = 30/41 (73%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
EE+ + + DEEE++++E+EE+++E+++ +++E S A
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGEA 49
Score = 40.1 bits (93), Expect = 4e-04
Identities = 17/32 (53%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
EDSD D SDEE D +E+EE++DE+++E+++E
Sbjct: 10 EDSDSD-SDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.8 bits (92), Expect = 6e-04
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
EDSD D+ +EE D E+EE+++ED++E+++E
Sbjct: 10 EDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.0 bits (90), Expect = 9e-04
Identities = 11/33 (33%), Positives = 28/33 (84%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E + S+ + +EEED+++E+EE+++E+++E+++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDD 39
Score = 37.8 bits (87), Expect = 0.002
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
F +E+ DS +EEE++D+E+EE+++E ++E+ +
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDD 39
Score = 37.8 bits (87), Expect = 0.002
Identities = 9/34 (26%), Positives = 28/34 (82%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ E+ + + ++EE++++E+EE+++E+++E ++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.88
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE 472
+ DSD + D++ D +++E+++ED++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 1.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 234 EEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
E EED + + +EEE +++E E D V VP
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVP 44
Score = 30.1 bits (67), Expect = 1.4
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 11/39 (28%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
+ DS+ E+ D ++E+EE++DE+++E+++E
Sbjct: 13 DSDSDEEEDD-----------DDEDEEDDDEDDDEDDDE 40
Score = 29.0 bits (64), Expect = 3.4
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEE 242
+ DSD + D++ D +++E+++++++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 28.6 bits (63), Expect = 4.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 474 EEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E EE+ + + +EEE +++E E D V VP
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVP 44
Score = 28.6 bits (63), Expect = 4.7
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDE 239
+ S+ DS+ E+ D D ++E D E+++E++DE
Sbjct: 10 EDSDSDSDEEEDDDD--EDEEDDDEDDDEDDDE 40
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 45.5 bits (108), Expect = 2e-05
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
R R + E + ++ +EEEE EE+ E+++EEEE +E EE+ E+EE
Sbjct: 16 ARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEY 75
Query: 494 ETASSS 499
E SS
Sbjct: 76 EKLKSS 81
Score = 37.4 bits (87), Expect = 0.014
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
RR+ R + + + E + + E + +++EEEE E EE+ +E+EE E
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYE 76
Query: 484 E-------EEEGEEEET 493
+ EEEG ++ +
Sbjct: 77 KLKSSFVVEEEGTDKLS 93
Score = 36.6 bits (85), Expect = 0.021
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE-----------EEEEEEEE 487
E E + + +EE + +EEEE +E EE+ +E+EE EE ++
Sbjct: 34 LEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLS 93
Query: 488 GEEEETETAS 497
+EE E
Sbjct: 94 ADEESNELLE 103
Score = 32.4 bits (74), Expect = 0.60
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ E EE EEE ++++EEEE + EE+
Sbjct: 39 EGERKEEEELEEEREKKKEEEERKEREEQ 67
Score = 32.0 bits (73), Expect = 0.86
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EEEE E+ ++ EE+ E E +EEEE EE E +
Sbjct: 15 QARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKK 55
Score = 30.8 bits (70), Expect = 1.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
E + + +E + E+++EEE+ +E EE+ E+EE E SS
Sbjct: 36 EKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 28.5 bits (64), Expect = 9.8
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
EE EE+ E E +EEEE EEE E+++ E
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Score = 28.5 bits (64), Expect = 9.9
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E++ ++ E EEEE EE ++ EE+ EGE +E E
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEE 47
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 46.4 bits (110), Expect = 3e-05
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 437 NARNGDSEYEDSDF--DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
A + D + SD SD+E D ++ + EE E +E+EEEEE EEEEEEE E+E
Sbjct: 229 AAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 46.4 bits (110), Expect = 3e-05
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 442 DSEYEDSDFDTSDEEYDS----------SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ YE D + + D S++EE++++D + EE+E +E+EEEEE EEE
Sbjct: 219 EEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Query: 492 ETETAS 497
E E
Sbjct: 279 EEEDED 284
Score = 42.9 bits (101), Expect = 3e-04
Identities = 15/64 (23%), Positives = 35/64 (54%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ E D+ D S + ++ +++E+++++ + EE+E +E+ EEEETE
Sbjct: 222 YEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Query: 501 AKND 504
+++
Sbjct: 282 DEDE 285
Score = 37.5 bits (87), Expect = 0.018
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+D + D D +Y EE+E +EDEEEEE EEE EEE+ +
Sbjct: 248 DDEEDDDQDGDY--VEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 37.5 bits (87), Expect = 0.022
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 206 IKSSNGDSEYEDSDF------DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+++ D + SD D D++ D EE+E E+EEEEE E EEEE +
Sbjct: 228 DAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 36.7 bits (85), Expect = 0.031
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 204 GIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+ + D E +D D D +E+ +EEEEE +EEEEEE+E+
Sbjct: 241 DVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 32.1 bits (73), Expect = 1.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 20/71 (28%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDS------------SEEEEEEEDE--------EEEEEEE 246
K+ + + YE D + + D EE+++++ + E+EEEEE
Sbjct: 214 KNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
Query: 247 EGEEEETETAS 257
EEEE E
Sbjct: 274 TEEEEEEEDED 284
Score = 32.1 bits (73), Expect = 1.1
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEE 241
D +Y + DEE + +EEEEEEEDE+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.7 bits (72), Expect = 1.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 431 NHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEE 471
+ + D +Y + DEE + +EEEEEEE+++E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.2 bits (68), Expect = 4.2
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE----------EEGEEEETETASSST 260
+ E D+ D S + ++ +DEE+++++ E+ EEEETE
Sbjct: 222 YEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Query: 261 AKND 264
+++
Sbjct: 282 DEDE 285
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 47.2 bits (112), Expect = 3e-05
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
A S ++ F+ +E+ D EE +++E++ E E+ E E E + E+ E+E+ + A
Sbjct: 633 KADENKSRHQQL-FEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691
Query: 497 SSSTAKNDPQM 507
++
Sbjct: 692 EANEGVVPIDK 702
Score = 45.6 bits (108), Expect = 1e-04
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ + + E E+ D D +E D +E E E+ E E E + E+ EE+E+E+
Sbjct: 632 LKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691
Query: 490 E 490
E
Sbjct: 692 E 692
Score = 44.1 bits (104), Expect = 3e-04
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 430 MNHNRRWNARNGDSEYEDSDF----DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ N+ + + + E ED D D ++E ++ E+ E E E + E+ EE+E+E++ E
Sbjct: 634 ADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEA 693
Query: 486 EEGEEEETETASSSTAKN 503
EG + + K
Sbjct: 694 NEGVVPIDKAVRRALPKV 711
Score = 40.6 bits (95), Expect = 0.003
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
D + S + EEE+E++ EE +++E+E E E+ E E + E ++D +
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEAN 694
Query: 509 T 509
Sbjct: 695 E 695
Score = 40.2 bits (94), Expect = 0.004
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+ G+ E ED +T D+E + E+ E + E + E+ E +E+E + ++ +
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDK 702
Query: 267 MVT 269
V
Sbjct: 703 AVR 705
Score = 38.3 bits (89), Expect = 0.018
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 178 IALLAMSFNLVQEEVISNVKAIAKHLG---------IIKS------SNGDSEYEDSDFDT 222
++LLA L+++ V + + ++K+ E E+ D D
Sbjct: 595 LSLLAQPSALLRKLVEQVFTYFIEDVTNEGLQLILDVLKADENKSRHQQLFEGEEEDEDD 654
Query: 223 SDEEYDSSEEEEEEEDEEEEEEE--EEGEE-EETETASSSTAKNDPQM 267
+E D +E E ED E E E E+GEE E+ + A ++
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDK 702
Score = 34.8 bits (80), Expect = 0.22
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 441 GDSEYEDSDFDT-SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+++ ++ + + D E +S + E+ EEDE+E++ E E ++ + +
Sbjct: 656 EETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLP 715
Query: 500 TAKND 504
A +
Sbjct: 716 DALDG 720
Score = 31.0 bits (70), Expect = 2.7
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
D E E + S+ E +S E+ EE+++E++ E EG + + K
Sbjct: 654 DLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKV 711
Score = 31.0 bits (70), Expect = 2.8
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 40/97 (41%)
Query: 441 GDSEYEDSDFDTSDEE------YDSSEEEEEEEEDEEEEEEEE----------------- 477
G+ E ED +T D+E DS E E + ED EE+E+E+
Sbjct: 647 GEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRR 706
Query: 478 -----------------EEEEEEEEEEGEEEETETAS 497
E+EE ++E+ +T A
Sbjct: 707 ALPKVLNLPDALDGGDSEDEEGMDDEQMMRLDTYLAQ 743
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 42.9 bits (101), Expect = 3e-05
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE EE +E+EEEEEEEE+E E E + EE E E
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSDDEELEEE 91
Score = 42.9 bits (101), Expect = 3e-05
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE EE DEEEEEEEEEE+E E E ++EE E
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELE 89
Score = 42.2 bits (99), Expect = 6e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
Y D ++ S + + E EE EE++EEEEEEEEEE+E E E ++E
Sbjct: 39 YGDEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEEL 88
Score = 41.0 bits (96), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE + ++EEEEEEE+EE+E E E ++EE EE E+
Sbjct: 57 AEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 41.0 bits (96), Expect = 2e-04
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S F + E +S E +EEEEE+EEEE+E E E ++EE EE E
Sbjct: 48 QSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ E + EEEEEEEE++E E E ++EE EEE + E
Sbjct: 59 ESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 40.2 bits (94), Expect = 3e-04
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+EEEEEE+EEE+E E E ++EE E E E+ E
Sbjct: 62 ENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 39.9 bits (93), Expect = 4e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E ++ EEEEEEEE+E+E E E ++EE EEE E+ E
Sbjct: 59 ESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 39.9 bits (93), Expect = 5e-04
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + SEE +EEEE+EEEEE+E E E ++EE EEE +
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
Score = 39.1 bits (91), Expect = 7e-04
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 453 SDEEYDSSEE------EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
DE Y+ S+ E EE E+ +EEEEEEEEEE+E E E ++ E
Sbjct: 40 GDEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEE 91
Score = 37.5 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ + S+E + EEEEEEE++ E E ++EE EEE E+ E
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 36.8 bits (85), Expect = 0.006
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E E+S+ + +EE + EE+E E E ++EE EEE E+ E
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 35.2 bits (81), Expect = 0.017
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
E + + +DEE + EEEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 34.5 bits (79), Expect = 0.036
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 435 RWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
+ E E++D + +EE + E E E D+EE EEE E+ E
Sbjct: 50 AFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 34.1 bits (78), Expect = 0.049
Identities = 18/27 (66%), Positives = 19/27 (70%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETETASS 258
EE EE DEEEEEEEEE +E E E S
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSD 84
Score = 33.7 bits (77), Expect = 0.061
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
EE + ++EEEEEE+EEE+E E E ++ E
Sbjct: 57 AEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEE 91
Score = 33.7 bits (77), Expect = 0.071
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E E+S+ + +EE + EE+E E + ++EE E E E+ E
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 32.5 bits (74), Expect = 0.14
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
N + E E+ + + E S++EE EE+ E+ E
Sbjct: 59 ESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 32.5 bits (74), Expect = 0.17
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
Y D ++ S + + E EE E+ +EEEEEEE EE+E E
Sbjct: 39 YGDEPYNISQSAFKKALEAEESEENDEEEEEEEEEEDEGEI 79
Score = 32.2 bits (73), Expect = 0.25
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ ++ E EE +E+EEEEEEEE+ E E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYV 82
Score = 31.0 bits (70), Expect = 0.56
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E + + +DEE + EEEE+E + E ++EE EEE +
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
Score = 30.6 bits (69), Expect = 0.67
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E + SEE +EEE+EEEEEE+E E ++ D
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
Score = 30.2 bits (68), Expect = 0.93
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
S F + E +S E +EEEE+EEEEE+E E E +
Sbjct: 48 QSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEE 90
Score = 28.3 bits (63), Expect = 5.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
E E++D + +EE + E E E ++EE EEE + E
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 46.8 bits (111), Expect = 3e-05
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDE-------------EEEEEEEEEEEEEEEEEGE 489
SE ED E DS +EEEE+ + E +EEE EE E+ E
Sbjct: 175 SESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSE 234
Query: 490 EEETETASSSTAKNDP 505
E E+ S +
Sbjct: 235 SESDESDSEISESRSV 250
Score = 44.4 bits (105), Expect = 2e-04
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+++ DS E+ + Y+ E E +E + E E + EE ++
Sbjct: 205 SQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPK 264
Query: 494 ETASSSTAKNDPQMVTVPITLCLMIMVGYIYGG 526
E +SST P + M GY G
Sbjct: 265 EKKTSST--FLPSL-----------MGGYFSGS 284
Score = 43.7 bits (103), Expect = 3e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E D +EEE E EDE + EE E++ ++EEEE + E
Sbjct: 164 KESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 43.3 bits (102), Expect = 4e-04
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 437 NARNGDSEYEDSDFDTSD-EEYDSSEEEEEEEEDEEEEEEEEEE-------------EEE 482
+ + D + S+ E+ SEE E++ D+EEEE+ + E +EE
Sbjct: 159 KKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEE 218
Query: 483 EEEEEGEEEETETASSSTAKNDPQ 506
E EE E S S +
Sbjct: 219 EGEEAPSINYNEDTSESESDESDS 242
Score = 40.6 bits (95), Expect = 0.003
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEE--------------EEEEEEEGEEE 251
K +SE ED E DS +EEEE+ D E EEE EE
Sbjct: 168 DKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSIN 227
Query: 252 ETETASSSTAKNDPQ 266
E S S +
Sbjct: 228 YNEDTSESESDESDS 242
Score = 39.4 bits (92), Expect = 0.007
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 208 SSNGDSEYEDSDFDTSDEEY-DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ + + D+ D DSS+EEE EE E+ E E E+ S +
Sbjct: 192 DDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSV 250
Score = 39.0 bits (91), Expect = 0.008
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ +E S ++++EEE E E+E + EE E++ ++ EEE++++
Sbjct: 158 SKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDS 201
Score = 38.7 bits (90), Expect = 0.011
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE--------- 487
+ + ++SD++ + E E+E + EE E++ ++EEEE+ +
Sbjct: 151 AKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGM 210
Query: 488 ---GEEEETETASSSTAKND 504
+EE + S N+
Sbjct: 211 LVDSSDEEEGEEAPSINYNE 230
Score = 38.7 bits (90), Expect = 0.012
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE---------EEEEEEEEEEEEEEGEE 490
+ + E E D S+E + ++EEEE+ + E+ + +EEE EE
Sbjct: 170 DDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYN 229
Query: 491 EETETASSSTAKNDP 505
E+T + S + ++
Sbjct: 230 EDTSESESDESDSEI 244
Score = 38.3 bits (89), Expect = 0.013
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
K + D + S+ E D S+ EE ED+ ++EEEE+ + E+
Sbjct: 159 KKKEAKESSDKDDEEESESE-DESKSEESAEDDSDDEEEEDSDSED 203
Score = 37.9 bits (88), Expect = 0.021
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 183 MSFNLVQEEVISNVKAIAKHLGII------------KSSNGDSEYEDSDFDTSDEEYDSS 230
++ V+ + S ++ + K LGI K S E SD D +EE +S
Sbjct: 120 LNSKPVKNVLESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKD-DEEESESE 178
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+E + EE E++ ++EE E+ ++E S
Sbjct: 179 DESKSEESAEDDSDDEEEEDSDSEDYSQYDG 209
Score = 36.0 bits (83), Expect = 0.079
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 458 DSSEEEEEEEEDEEEEEEEEE--EEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+E +++DEEE E E+E EE E++ +EEE ++ S ++ D +V
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLV 212
Score = 34.0 bits (78), Expect = 0.32
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA-SSSTAKNDPQMVT 269
DS E+ + Y+ E E ++ + E E + E++ S K T
Sbjct: 212 VDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSST 271
Query: 270 VPITLCLMIMVGYIYGG 286
+L M GY G
Sbjct: 272 FLPSL----MGGYFSGS 284
Score = 33.3 bits (76), Expect = 0.46
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ ++ S+++E +E ++++EEE E E+E + EE E++++
Sbjct: 149 GKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEE 197
Score = 31.7 bits (72), Expect = 1.6
Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE------------------EEEEEEEEE 483
+SE ++SD + S+ S EE + +E+ E+E++++E+
Sbjct: 234 ESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPSLMGGYFSGSEDEDDDDED 293
Query: 484 EEEEGEEEETE 494
+ + ++
Sbjct: 294 IDPDQVVKKPV 304
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 47.0 bits (112), Expect = 3e-05
Identities = 24/33 (72%), Positives = 25/33 (75%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S E EEEE+EEEE EEEEEEEEEEE EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 46.2 bits (110), Expect = 5e-05
Identities = 24/33 (72%), Positives = 25/33 (75%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
S E EEEEE+EEE EEEEEEEEEEE EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 45.0 bits (107), Expect = 1e-04
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE+EEEEEE EEEEEEEEEE E E
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/30 (66%), Positives = 20/30 (66%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E EEEEEEEEE EEEEE EEEE T
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEE------EEEEEGEEEETETA 496
EE + EEE EEE+EEEEEEE EEE E EEE T +A
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSA 353
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/30 (60%), Positives = 19/30 (63%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E EEEEEEEEE EEE EEEE E +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 40.4 bits (95), Expect = 0.004
Identities = 19/30 (63%), Positives = 19/30 (63%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E EEEEEEEEE EEEE EEEE E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 38.5 bits (90), Expect = 0.014
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E EEEEEEEEE E EEEE E +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 38.1 bits (89), Expect = 0.017
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
EE + EEE EE+EEEEEEEE EEE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.7 bits (88), Expect = 0.026
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETAS 257
S E EEEE+EEEE EEE EEEE E +
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 37.3 bits (87), Expect = 0.029
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASS 258
S E EEE+EEEEE EE EEEE E +
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 37.3 bits (87), Expect = 0.035
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
E EE+EEEEEE E EEEE E +
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 37.3 bits (87), Expect = 0.035
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
E + EEEE EE+EEEEEEEE EEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.2 bits (84), Expect = 0.076
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
S E + EEEEEE EEEEEEEEE E
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 35.8 bits (83), Expect = 0.093
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETETASSST 500
E EEEEEEEEE EEEE E T
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 35.0 bits (81), Expect = 0.16
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+EE + EE EEE+EEEEEEE EEE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 35.0 bits (81), Expect = 0.18
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASSST 260
E E+EEEEEEE EEEE E T
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 34.2 bits (79), Expect = 0.27
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
E + EEEE E+EEEEEEEEE EE
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 34.2 bits (79), Expect = 0.29
Identities = 18/26 (69%), Positives = 18/26 (69%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETE 254
EEEEEEE EEEEEEEE EE E
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFE 331
Score = 33.1 bits (76), Expect = 0.58
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E + EEEEE +EEEEEEEEE E E
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 32.7 bits (75), Expect = 0.79
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 407 RPRDLQKTIQDTTGAYNRRRSSAMNH-------NRRWNARNGDSEYEDSDFDTSDEEYDS 459
RPR+ + + T + RRR + RR R S E + + +EE
Sbjct: 261 RPRENGRAV---TESMRRRRGEMIRRFIDRLPLRRRRRRRPPPSPPEPEEEEEEEEEVP- 316
Query: 460 SEEEEEEEEDEEEEEEEE 477
EEEEEEEE+EE EEE
Sbjct: 317 -EEEEEEEEEEERTFEEE 333
Score = 30.8 bits (70), Expect = 3.6
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE---------EEGEEEETETA 256
S E + + +EE EEEEEEE+E EEE EEE T +A
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSA 353
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 46.9 bits (112), Expect = 4e-05
Identities = 17/58 (29%), Positives = 39/58 (67%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+GD E E D D+ Y EE+++++E+ +EE+EE + E++E+++ ++++ + A+
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Score = 45.0 bits (107), Expect = 1e-04
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+GD E E D D+ Y EE++++++E +EE+EE + E+ E +D
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIA 159
Score = 41.5 bits (98), Expect = 0.002
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
D +EE ++ D EE+++++EE +EE+EE + E+ E +D
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIA 159
Score = 39.6 bits (93), Expect = 0.006
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
D Y D + D D+E E+EE + +++E++++++++++ E E
Sbjct: 117 DDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Score = 38.4 bits (90), Expect = 0.013
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D Y D + D D+E E+EE + E++E+++++ ++++ T S
Sbjct: 117 DDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERS 164
Score = 36.5 bits (85), Expect = 0.056
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
D EE E ++ + EE+++++EE +EE+EE + E + +D
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIA 159
Score = 33.4 bits (77), Expect = 0.56
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
D E +D D + SDEE + S + E++ ED+++++++++ E E
Sbjct: 122 DLEEDDDDDEESDEEDEESSKSEDD-EDDDDDDDDDDIATRERSLERRRR 170
Score = 32.3 bits (74), Expect = 1.1
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE---EEEEEEEEEEGEEEETETASS 498
D E E+S DE+ D +++++ E E E EE+ E E + +
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEFYYYQGTYYGT 193
Query: 499 STA 501
S+A
Sbjct: 194 SSA 196
Score = 31.5 bits (72), Expect = 2.0
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+D + EEE +++ ++ + EE+++++E +EE E +S S D
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 29.2 bits (66), Expect = 10.0
Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+ D E ++ DEE SE++E+++D++++++ E
Sbjct: 127 DDDDEESDE-----EDEESSKSEDDEDDDDDDDDDDIATRER 163
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 44.2 bits (105), Expect = 4e-05
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
D ++E + EE E EE DEEE+ +E E+E + + + E E K +M+
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 38.4 bits (90), Expect = 0.004
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ +++++EEEEEEE E EE +EEE +E E +
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELA 129
Score = 36.9 bits (86), Expect = 0.011
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D++ EEEEE E +E +EEE+ +E E+E + + E+
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREK 135
Score = 36.5 bits (85), Expect = 0.018
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
D ++E + EE E EE +EEE+ +E E+E + +N+
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 35.3 bits (82), Expect = 0.043
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
K + K LG+ K + E E+ + + DEE E E+E + + E+ E E ++ E
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 31.1 bits (71), Expect = 1.3
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E E+ + + + E EE+ +E ++E + + E+ E E ++ E
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 42.9 bits (101), Expect = 4e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ EE+ EE++EE+++EEE+EEEEEE G
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 42.9 bits (101), Expect = 5e-05
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
EE+ E++EEE+++EEE+EEEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
EE+ +E+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 40.6 bits (95), Expect = 3e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EE+ EE+EEE+++EEE+E EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E+ EE+EEE+++EEE+EE EEE +
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEALAGLGA 104
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EE+ EE+EEE+++EE +EEE E A +
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 39.8 bits (93), Expect = 5e-04
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGE 489
EE EE+EEE+++EEE+EEEE E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E++ EE+EEE+++EEE+EEE EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.0 bits (91), Expect = 0.001
Identities = 15/25 (60%), Positives = 24/25 (96%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEE 483
++EE+ EE+E+E+++EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.0 bits (91), Expect = 0.001
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
EE+ E++EEE+++EE +EEE E A +
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 38.2 bits (89), Expect = 0.002
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASS 258
+ EE+ EE EEE+++EEE EEEE E +
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 36.3 bits (84), Expect = 0.009
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEE 479
+ +EE+EEE++ EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 35.2 bits (81), Expect = 0.020
Identities = 13/24 (54%), Positives = 22/24 (91%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEE 252
++EE+ EE++EE+++EEE+ EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 34.8 bits (80), Expect = 0.034
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASS 258
+ EE+EE++++EEE+EE EEE +
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEEEALAGLGA 104
Score = 34.8 bits (80), Expect = 0.036
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
EE +EEE++++EE+EEEEEE
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 34.0 bits (78), Expect = 0.053
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGE 249
+ +EE+EEE+ +EEE+EEEE E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.9 bits (75), Expect = 0.14
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSS 259
EE+ +E+EEE+++E E+EE E + +
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 32.5 bits (74), Expect = 0.20
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGE 249
E+ + EEE+++E+E+EEEEEE
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEEALA 100
Score = 31.7 bits (72), Expect = 0.32
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETA 256
EE+ EE+EEE+++ EE+E E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 31.3 bits (71), Expect = 0.43
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEE 245
++ + EE+++EE++EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.69
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEE 475
++ + EE+++EEE EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.85
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEG 248
E E+++EEE EEEEEE G
Sbjct: 77 KAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 473 EEEEEEEEEEEEEEEGEEEETETASSSTA 501
EE+ EE+EEE+ +EEE E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEAL 99
Score = 29.4 bits (66), Expect = 2.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTA 261
E++ EE+EEE+ +EEE E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEAL 99
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 43.8 bits (102), Expect = 5e-05
Identities = 27/66 (40%), Positives = 34/66 (51%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G+ + DT+ + D EEEEE E EEE EEE E EEE EEE EE E
Sbjct: 44 GEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103
Query: 501 AKNDPQ 506
+ +P+
Sbjct: 104 PEPEPE 109
Score = 41.5 bits (96), Expect = 3e-04
Identities = 28/66 (42%), Positives = 36/66 (54%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+D++ D+E + EE E EEE EEE E EEE EEE E EE EEE E + +P
Sbjct: 53 DDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEP 112
Query: 506 QMVTVP 511
+ P
Sbjct: 113 EPEPEP 118
Score = 38.8 bits (89), Expect = 0.002
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
D +EE + EEE EEE E EEE EEE E EE EE E E E + +P+
Sbjct: 62 DEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Query: 511 P 511
P
Sbjct: 122 P 122
Score = 38.0 bits (87), Expect = 0.004
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ G + E +D+ + ++E EEE+E E EEE EEE E EEE EE E E
Sbjct: 38 KGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGE 97
Query: 499 STAKNDPQ 506
+ +P+
Sbjct: 98 EEPEPEPE 105
Score = 37.6 bits (86), Expect = 0.006
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 5/103 (4%)
Query: 171 SLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSE--YEDSDFDTSDEEYD 228
SLYLL A+L S NL + GI K G E + DT+ + D
Sbjct: 5 SLYLL---AILLFSANLFAGVGFAAAADEPADKGITKGGKGKGEKGTKVGADDTNGTDPD 61
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
EEEEE + EEE EEE EEE E + + P
Sbjct: 62 DEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEP 104
Score = 37.6 bits (86), Expect = 0.007
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
+EE + EE EEE E EEE EEE E EE EEE E E E + +P+ T
Sbjct: 67 EEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEPGAAT 126
Query: 514 L 514
L
Sbjct: 127 L 127
Score = 34.5 bits (78), Expect = 0.081
Identities = 25/69 (36%), Positives = 33/69 (47%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + E + + + E + EE E EEE EEE E EE EEE E E E E E
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEP 118
Query: 502 KNDPQMVTV 510
+ +P T+
Sbjct: 119 EPEPGAATL 127
Score = 33.8 bits (76), Expect = 0.11
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEE---EDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
D+ D D + +EE EEE EEE E+E EEE E EE EEE E E E E
Sbjct: 54 DTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPE 113
Query: 499 STAKNDPQ 506
+ +P+
Sbjct: 114 PEPEPEPE 121
Score = 33.4 bits (75), Expect = 0.17
Identities = 25/80 (31%), Positives = 33/80 (41%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E E+ + + EE EEE EEE + EE EEE E E E E E E E
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEP 122
Query: 501 AKNDPQMVTVPITLCLMIMV 520
+ V +P + +V
Sbjct: 123 GAATLKSVALPFAIAAAALV 142
Score = 31.1 bits (69), Expect = 1.1
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 418 TTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE 477
T G + N + D E E+ + +EE + E EEE E+E E EE
Sbjct: 37 TKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETG 96
Query: 478 EEEEEEEEEEGEEEETE 494
EEE E E E E E E
Sbjct: 97 EEEPEPEPEPEPEPEPE 113
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 45.4 bits (107), Expect = 5e-05
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE---EEEEEEEEEEEEEEGE 489
N W+ + E + D +EE + EE + EE+E+EE + E E EEE E
Sbjct: 155 NIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEE 214
Query: 490 EEE 492
E E
Sbjct: 215 EAE 217
Score = 42.7 bits (100), Expect = 5e-04
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEE-EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E D + DEE S E E +EEEEEE E ++ E+ + E E +
Sbjct: 181 RLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEE 240
Query: 501 AKNDPQMVTV 510
+ + +++ +
Sbjct: 241 EEMEEEVINL 250
Score = 39.6 bits (92), Expect = 0.004
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E SD + EEEEE E ++ E+ + E E ++++GEEEE E + +
Sbjct: 194 EEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEI 253
Query: 504 D 504
+
Sbjct: 254 E 254
Score = 39.2 bits (91), Expect = 0.006
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE----EEEEEEEEGEEEETE 494
R + E E+ + D E E E ++ + EEEE EEE E E EEE EE
Sbjct: 206 RELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVP 265
Query: 495 TASSSTAKNDPQ 506
+ + +
Sbjct: 266 RNNEESPAKKQK 277
Score = 37.3 bits (86), Expect = 0.020
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 20/85 (23%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDE---------EEEEE-------EEEEEEEE-- 483
+ E ++ S E + EEEEEE E + E E EEEE EEE
Sbjct: 189 EEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVI 248
Query: 484 --EEEEGEEEETETASSSTAKNDPQ 506
E E EEE + P
Sbjct: 249 NLFEIEWEEESPSEEVPRNNEESPA 273
Score = 36.9 bits (85), Expect = 0.027
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
D + D+ E + + + EEEE EE + EEEE EE +++
Sbjct: 159 DNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYG 202
Score = 36.5 bits (84), Expect = 0.035
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+YE D EEE EEE E E EEE EE EE
Sbjct: 224 DVVDYEGERIDKKQ----GEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
Score = 35.7 bits (82), Expect = 0.068
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
S +G+ + ++ + E EEE + E E EEE EE + + +
Sbjct: 218 GSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
Score = 35.0 bits (80), Expect = 0.11
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+D+ E+ +E + + + EEEE EE + EEE+ E S S + + ++
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNREL 208
Score = 35.0 bits (80), Expect = 0.13
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D+E E+ ++ E + EE + E E E EEEE E
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 34.6 bits (79), Expect = 0.17
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 184 SFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
FN+V + N +A + E D + DEE S E + EEE
Sbjct: 153 RFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEE 212
Query: 244 EEEEGEEEETET 255
EEE ++ E
Sbjct: 213 EEEAEGSDDGED 224
Score = 33.8 bits (77), Expect = 0.29
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ D +E + + + EEEE EE + EE E+EE + S
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYG 202
Score = 32.3 bits (73), Expect = 0.88
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
D D ++E ++ + + E+EE EE + EEEE E S
Sbjct: 159 DNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGS 198
Score = 32.3 bits (73), Expect = 0.89
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 209 SNGDSEYED----SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S+G E ED SD + EEEEE E ++ E+ + E E + + +
Sbjct: 185 SDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEME 244
Query: 265 PQMVTV 270
+++ +
Sbjct: 245 EEVINL 250
Score = 31.5 bits (71), Expect = 1.7
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 210 NGDSEYEDSDFDTSDEEYD--SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
N ++ D D +EE S EEEE++E + EG E E +D
Sbjct: 164 NDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSD 220
Score = 31.1 bits (70), Expect = 2.1
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ + +E+ ++ + + + EEEE EE + E E
Sbjct: 150 RVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEE 191
Score = 30.7 bits (69), Expect = 3.1
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 22/84 (26%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSS----------------------EEEEEEEEDEEEEE 474
N G ++ E SD + E+ D +E+ +E + +
Sbjct: 115 NEYPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDV 174
Query: 475 EEEEEEEEEEEEEGEEEETETASS 498
+ EEEE EE + EEEE E S
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGS 198
Score = 30.3 bits (68), Expect = 3.1
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 19/73 (26%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEED-------------------EEEEEEEEEGEEEE 252
D E + + E + EEEE E EEEE EEE E
Sbjct: 193 DEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFE 252
Query: 253 TETASSSTAKNDP 265
E S ++ P
Sbjct: 253 IEWEEESPSEEVP 265
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 45.5 bits (107), Expect = 6e-05
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+E+E DE+EEEEEEEEEEE E EE E+ T+++ST
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNST 167
Score = 45.1 bits (106), Expect = 8e-05
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 23/96 (23%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE----------------------- 475
+ G++ + + D SDE+ + EEEEEEE + EE E+
Sbjct: 121 KAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDN 180
Query: 476 EEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EE EEE E E T ++T+ N T P
Sbjct: 181 GEEGEEESVTEAEAEGTTVAGPTTTSPNGGFQPTTP 216
Score = 44.7 bits (105), Expect = 1e-04
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D+S+E D EEE EE+ EEE E+ + E+EE E E T ++ +
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLG 99
Score = 42.8 bits (100), Expect = 4e-04
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 458 DSSEEE----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
DSSEE EEE EEE EEE E+ + E EE E E + ST P T
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGDATPGT 108
Score = 40.1 bits (93), Expect = 0.003
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+E +E+E+EEEEEEEEE E EE E ++ T+ N
Sbjct: 133 DESDEDEEEEEEEEEEEAEVEENEQGTNGTSTN 165
Score = 38.1 bits (88), Expect = 0.012
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
D S+E+EEEE+EEEEEE E E E+ +S+ +
Sbjct: 133 DESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVD 170
Score = 37.8 bits (87), Expect = 0.016
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ +E +S E+EEEEE+EEEEE E E E+ T S+++ + D
Sbjct: 129 ATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVD 170
Score = 37.0 bits (85), Expect = 0.029
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
S + EE D + EEE EEE EEE E+ + + A+N
Sbjct: 46 SGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 35.4 bits (81), Expect = 0.093
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
S DS E+ D D+S+EE + EEE +E+ + E+E E E T S+ T
Sbjct: 46 SGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVT 97
Score = 35.1 bits (80), Expect = 0.12
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE------------------------E 246
G++ + + D SDE+ + EEEEEEE E EE E+ E
Sbjct: 123 GNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGE 182
Query: 247 EGEEEETETASSSTAKNDPQMVTVP 271
EGEEE A + T P
Sbjct: 183 EGEEESVTEAEAEGTTVAGPTTTSP 207
Score = 34.3 bits (78), Expect = 0.23
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
DSSEE + + EEE EEE EEE S +
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
Score = 32.7 bits (74), Expect = 0.63
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
D+S+E D EEE +EE EEE E+ + + A+N
Sbjct: 49 DSSEENGDGDSSEEE-GEEETSNEEENNEDSDGNEDEEAEAEN 90
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 46.1 bits (109), Expect = 6e-05
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E + + ++E D E E ED ++E E++EE++ EEEE EE+
Sbjct: 123 EDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKES 175
Score = 44.6 bits (105), Expect = 2e-04
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D ED D DE +E E E+ ++E E++EE++ EEEE GEE+E+ ++
Sbjct: 124 DESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Query: 502 KNDPQMV 508
K D V
Sbjct: 184 KFDKSGV 190
Score = 43.4 bits (102), Expect = 5e-04
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEE-----------EEEEDEEEEEEEEEEEEEEEEEEG 488
D + EDS D +EE D S E+E E E E+ ++E E++EE++
Sbjct: 106 GSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKME 165
Query: 489 EEEETETASSSTAKNDPQ 506
EEE E S +
Sbjct: 166 EEEAGEEKESVEQATREK 183
Score = 42.7 bits (100), Expect = 8e-04
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 442 DSEYEDSDFDTSDE-EYDSSEEEEEEEEDEEEEEE----------EEEEEEEEEEEEGEE 490
DSE + D SD DS+++EEEEEEDE E+E E E E+ +E
Sbjct: 96 DSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDE 155
Query: 491 EETE 494
E +
Sbjct: 156 TEDD 159
Score = 41.5 bits (97), Expect = 0.002
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ +S D SD SE+ ++EE+EEE+E E+E ++E+E E+E++
Sbjct: 92 AKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDL 151
Query: 501 AK 502
+
Sbjct: 152 SD 153
Score = 39.2 bits (91), Expect = 0.008
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE-EEEGEEEETETASSST 500
+ E E + + D+E ++ E E E+ ++E E++EE++ EEE EE E+ +T
Sbjct: 121 EEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Query: 501 AKNDP 505
+
Sbjct: 181 REKKF 185
Score = 38.4 bits (89), Expect = 0.013
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ + E E+ D + + E+ ++EEEEEE E E E
Sbjct: 75 NQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 38.0 bits (88), Expect = 0.018
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 443 SEYEDSDFDTSDEE-----YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + + D D+E DS EEE+EE+DE+E++++EEE E ++ + +E
Sbjct: 270 GDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPV 326
Score = 38.0 bits (88), Expect = 0.019
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
D ++ E D ++E ++E + + EEE+EE++E+E+++ EEE E A ++P
Sbjct: 270 GDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEP 325
Score = 38.0 bits (88), Expect = 0.019
Identities = 11/61 (18%), Positives = 27/61 (44%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+F + E + ++ E E+ + + + E+ ++E EEEE E+ ++ +
Sbjct: 78 YVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDE 137
Query: 507 M 507
Sbjct: 138 A 138
Score = 36.5 bits (84), Expect = 0.053
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ E + + ++E D E E ++ ++E E+ EE++ E
Sbjct: 123 EDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKME 165
Score = 36.5 bits (84), Expect = 0.057
Identities = 14/71 (19%), Positives = 38/71 (53%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + ++ +++D +E+ + E+E++++E+E E ++ + +E EG + E+
Sbjct: 278 DEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKE 337
Query: 497 SSSTAKNDPQM 507
SS K ++
Sbjct: 338 LSSFEKRQAKL 348
Score = 35.7 bits (82), Expect = 0.10
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
K + +S + SD D E + +EEEEEEDE E+E + E+E S ++ D
Sbjct: 93 KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLED 150
Score = 35.0 bits (80), Expect = 0.16
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ E D + + S E+ +DE E++EE++ EEEE S +
Sbjct: 128 EDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Score = 35.0 bits (80), Expect = 0.17
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D ED D DE +E E ED ++E E++ E++ E + ++ Q
Sbjct: 124 DESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Score = 35.0 bits (80), Expect = 0.18
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+S + ++ + D +E S E+ ++E E++EE++ E EE E S A
Sbjct: 124 DESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Score = 35.0 bits (80), Expect = 0.19
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ + DS+ E+ D + ++E D EEE E ++ + +E E + E E
Sbjct: 281 DKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSS 340
Query: 493 TE 494
E
Sbjct: 341 FE 342
Score = 34.6 bits (79), Expect = 0.24
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
S D + EDS D +EE D S E+E +DE+E + E E + + T
Sbjct: 104 SDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDET 156
Score = 34.2 bits (78), Expect = 0.27
Identities = 16/58 (27%), Positives = 34/58 (58%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D + +D D D+ +E ++E +E + + EEE+EE++E+E +++E E ++
Sbjct: 259 DPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAA 316
Score = 34.2 bits (78), Expect = 0.30
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
D + D+E D ++E + EEE+EE++E+E++++EE E
Sbjct: 272 DAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPV 326
Score = 34.2 bits (78), Expect = 0.34
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
S D +D D E +SS E+ +++ E++EE++ EEE E S +
Sbjct: 126 SLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 33.4 bits (76), Expect = 0.49
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 441 GDSEYED-SDFDTSDEEYDSSEEEEEE---------EEDEEEEEEEEEEEEEEEEEEGEE 490
G+ EYED D D++ D+ ++ E E +++ + + EEE+EE++E+E++ +E
Sbjct: 250 GNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDE 309
Query: 491 EETETASSSTAKND 504
EE A+ K D
Sbjct: 310 EEPPEAAMDKVKLD 323
Score = 33.4 bits (76), Expect = 0.51
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
+ + ++ D E++EE+ EEEE EE E E T
Sbjct: 141 FNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKK 184
Score = 33.4 bits (76), Expect = 0.56
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 213 SEYEDSDFDTSDEE---YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ + + D D+E ++ + EEE++E++E+E+++ EEE E A ++P
Sbjct: 270 GDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEP 325
Score = 33.0 bits (75), Expect = 0.75
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
+ + E + + S E D S++E E+++E++ EEEE GEE+E+ ++ K D V
Sbjct: 133 DDEDEADLFNESESSLE-DLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGV 190
Score = 32.3 bits (73), Expect = 1.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
+ +S D SD SE+ ++E+EEEE+E E E
Sbjct: 89 RVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 31.9 bits (72), Expect = 1.6
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S++ + E E+ + + D E + E E E+ + E E+ E
Sbjct: 114 SADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDE 160
Score = 31.5 bits (71), Expect = 1.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 201 KHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ + ++ +E E S D SD+E + EE++ EE+E EE+E +
Sbjct: 130 EMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATR 181
Score = 31.5 bits (71), Expect = 1.8
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
+ + + + + E+ ++E EEEE E+ ++ +
Sbjct: 89 RVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEA 138
Score = 31.1 bits (70), Expect = 2.8
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D + + D +++ E ++E + + EEE+EE++E+E++++E E E
Sbjct: 262 EKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVK 321
Query: 500 T 500
Sbjct: 322 L 322
Score = 30.3 bits (68), Expect = 4.2
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
DS+ E+ D + ++E D EEE E ++ + +E E
Sbjct: 289 ADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLE 333
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 43.8 bits (104), Expect = 8e-05
Identities = 21/42 (50%), Positives = 25/42 (59%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ + EEE EE E EE E+E EEE EEE E E + E A
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 42.3 bits (100), Expect = 3e-04
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+E+ + EE E EE E+E EEE EEE E E +EE+ + A
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIA 47
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE + EEE EE + EE E+E EEE EEE E E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDE 41
Score = 41.5 bits (98), Expect = 6e-04
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EE+ ++ EEE EE E EE E+E EEE E S + ++ Q
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQ 43
Score = 41.1 bits (97), Expect = 7e-04
Identities = 18/44 (40%), Positives = 22/44 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE E EE EDE EEE EEE E E +E + + E
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 41.1 bits (97), Expect = 7e-04
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE+ E+ E+E EE E EE E+E EEE EEE+E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEA 36
Score = 41.1 bits (97), Expect = 7e-04
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEE EE E EE E+E EEE EEE E E + +
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ E+ EE+ EE E EE E+E EEE EEE
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAEL 38
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E+ EEE EE E EE E+E EEE EE E E AK
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E ++ EE E+E EEE EEE E E +EE+ + E E
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELE 50
Score = 39.2 bits (92), Expect = 0.003
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EE+ E+ +EE EE E EE E+E EE EE A
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAE 37
Score = 38.8 bits (91), Expect = 0.004
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+T EE E EEE E+E E E +EE+ + E E + +E E
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 38.8 bits (91), Expect = 0.004
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
EE + EEE EE E EE E+E EEE E S + ++ Q
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQ 43
Score = 38.1 bits (89), Expect = 0.007
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+N E E + + + D EEE EEE E E +EE+ + E E + +E E
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELE 57
Score = 36.1 bits (84), Expect = 0.035
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E E+++ + + E+ + EE EEE + E +EE+ + E E + E EE
Sbjct: 7 QVEEEVEETEVEEAVED-EVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60
Score = 33.4 bits (77), Expect = 0.22
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
+E ++ EE E++ EEE EEE E E + +
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 32.7 bits (75), Expect = 0.47
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
E E EE E +E E+E EE EE A
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAE 37
Score = 31.5 bits (72), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 213 SEYEDSDFDTSDEEY--DSSEEEEEEEDEEEEEEEEEGEEEETETA 256
E + + +E ++ E+E EEE EEE E E +EE+ + A
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIA 47
Score = 31.5 bits (72), Expect = 1.1
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E E EE E+E EEE EE E E AK
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 30.7 bits (70), Expect = 2.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
K+ + E E+++ + + E+ + EE EEE E E +EE+ + E E
Sbjct: 4 KNEQVEEEVEETEVEEAVED-EVEEETVEEESEAELLDEEQAKIAELE 50
Score = 30.0 bits (68), Expect = 3.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
EE+ E+ EEE EE E E E E + +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEA 36
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 42.4 bits (100), Expect = 8e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ E E DE EEEE+EEE EEE +++
Sbjct: 73 AAAGAEAAAEADEAEEEEKEEEAEEESDDDM 103
Score = 40.8 bits (96), Expect = 2e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ E E +E EEEE+EEE EEE ++
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 40.1 bits (94), Expect = 5e-04
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
++ E E +E EEEE+EEE EEE ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 39.7 bits (93), Expect = 6e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
E E ++ EEEE+EEE EEE +++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDDDML 104
Score = 38.5 bits (90), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
++ E E +E EEEE+EEE EEE +++
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.2 bits (89), Expect = 0.002
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ E E +E EEEE+EEE EE +++
Sbjct: 69 AAAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.0 bits (86), Expect = 0.006
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETE 494
E E +E EEEE+EEE EEE +
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDD 101
Score = 36.6 bits (85), Expect = 0.007
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ + E +E EEEE+EEE E E ++
Sbjct: 68 GAAAAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 36.2 bits (84), Expect = 0.009
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETE 494
E E +E EEEE+EE EEE++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESD 100
Score = 35.8 bits (83), Expect = 0.013
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETE 254
E E DE EEEE+EE EEE++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESD 100
Score = 34.7 bits (80), Expect = 0.033
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETE 254
+E E ++ EEEE+EEE EEE +
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 33.9 bits (78), Expect = 0.056
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E E +E EEEE+ EE E E+
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 32.0 bits (73), Expect = 0.26
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 231 EEEEEEEDEEEEEEEEEGEE 250
+E EEE++EEE EEE ++
Sbjct: 83 ADEAEEEEKEEEAEEESDDD 102
Score = 32.0 bits (73), Expect = 0.26
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
++ E + +E EEEE+ EE E E+
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 32.0 bits (73), Expect = 0.32
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGE 249
E ++E EEEE EEE EEE + +
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESDDD 102
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
E D +EEEE+EE+ EEE +++
Sbjct: 81 AEADEAEEEEKEEEAEEESDDDML 104
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEE 479
E ++E EEEE++EE EEE +++
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.6 bits (72), Expect = 0.37
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 231 EEEEEEEDEEEEEEEEEGEEE 251
E +E EE+E+EEE EEE +++
Sbjct: 82 EADEAEEEEKEEEAEEESDDD 102
Score = 30.8 bits (70), Expect = 0.75
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEE 478
++ ++ E EEEE+E+E EEE +++
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.8 bits (70), Expect = 0.76
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEG 248
++ ++ E EEEE++EE EEE ++
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.8 bits (70), Expect = 0.77
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
E +E E+EE+EEE EE +++
Sbjct: 81 AEADEAEEEEKEEEAEEESDDD 102
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 472 EEEEEEEEEEEEEEEEGEEEETETASSS 499
E E +E EEE +EEE E S
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 28.5 bits (64), Expect = 4.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
++ E E +E EEE +EEE E S
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 45.2 bits (108), Expect = 8e-05
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ + D + + ++ EEE+EEEEEEEEEE EEE G
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 44.5 bits (106), Expect = 1e-04
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 448 SDFDTSDEEY---DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+D D DEE S++ + E+EEEEEEEEEEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 40.6 bits (96), Expect = 0.002
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 181 LAMSFNLVQEEVISNV--KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEED 238
LA+ +V E ++ KA+A+ L + ++ D + D + + EEEE+
Sbjct: 248 LAVEAGIVTPETADDILSKAVAQAL-ALAAALADKDALDEELKEVLSAQAQAAAAEEEEE 306
Query: 239 EEEEEEEEEGEEEE 252
EEEEEEEEE EEE
Sbjct: 307 EEEEEEEEEPSEEE 320
Score = 39.8 bits (94), Expect = 0.004
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EE +E + + EEEEEEEEEEE EE E A++
Sbjct: 286 EELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 36.8 bits (86), Expect = 0.037
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D+ +EE +E + + EEEEEEEEEE EEE +E
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSE 318
Score = 34.8 bits (81), Expect = 0.15
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 231 EEEEEEEDEEEEEEEEEG 248
EEEEEEE+EEEE EEE
Sbjct: 304 EEEEEEEEEEEEPSEEEA 321
Score = 34.8 bits (81), Expect = 0.16
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 231 EEEEEEEDEEEEEEEEEGE 249
EEEEEEE+EEE EEE
Sbjct: 305 EEEEEEEEEEEPSEEEAAA 323
Score = 32.5 bits (75), Expect = 0.77
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ ++ +EE E + + EEEEEE EEEE E S
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 31.8 bits (73), Expect = 1.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
E + EEEEEEE+E EEE G
Sbjct: 301 AEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 31.4 bits (72), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +EE ++ + + EEEEEEE EEEE E
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEE 315
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 45.7 bits (108), Expect = 9e-05
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE----EETETASSSTAKN 503
+ ++E D +E E+EE+ D+++ E E+EE+ E E EG+E +E+E +
Sbjct: 195 RSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESG 254
Query: 504 DPQMV 508
+ +MV
Sbjct: 255 EEEMV 259
Score = 43.8 bits (103), Expect = 3e-04
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
GD E D + D++ + E+EE+ E E E +E +E E + E E S
Sbjct: 204 GDDT-ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSD 262
Query: 501 AKNDPQ 506
+ P
Sbjct: 263 QDDLPD 268
Score = 41.1 bits (96), Expect = 0.002
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEE-EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D E D D T +E+ + E E E +E +E E + E E EEE + + + +
Sbjct: 211 DEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDES 270
Query: 501 AKNDPQM 507
+
Sbjct: 271 DDDSETP 277
Score = 40.7 bits (95), Expect = 0.003
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E D +E+ D + E E+E++ E E E +E +E E + E+E+ ++
Sbjct: 202 EMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQS 261
Query: 504 D 504
D
Sbjct: 262 D 262
Score = 39.9 bits (93), Expect = 0.006
Identities = 11/69 (15%), Positives = 31/69 (44%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + + E + + +E + +E E + + E EEE + ++++ + ++++ET
Sbjct: 218 DQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETP 277
Query: 497 SSSTAKNDP 505
P
Sbjct: 278 GEGARPARP 286
Score = 36.8 bits (85), Expect = 0.048
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEE-------EEDEEEEEEEEEGEEEETE 254
D E D D T +E+ + E E E +E E + E E GEEE +
Sbjct: 211 DEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ 260
Score = 34.5 bits (79), Expect = 0.21
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE----EETETASSST 260
+++S E D D ++ DEE ++ E E EE+ E E EG+E +E+E +
Sbjct: 193 MLRSMELAEEMGD-DTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Query: 261 AKNDPQMV 268
+ +MV
Sbjct: 252 ESGEEEMV 259
Score = 33.8 bits (77), Expect = 0.45
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 435 RWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
N + E E + S + + + E E +EE + ++++ +E +++ E
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
Score = 32.6 bits (74), Expect = 0.83
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE-----EEEGEEEETETASSSTAKND 264
D+E ED + D D++ +E+EE+ E E E +E E E + E+E+ ++D
Sbjct: 206 DTESEDEE-DGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSD 262
Score = 31.8 bits (72), Expect = 1.5
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+ G+ E E + E ++++ E E +EE + +++ +E++ S
Sbjct: 225 QEEQGEGEGEGQEGSAPQES-EATDRESESGEEEMVQSDQDDLPDESDDDS 274
Score = 29.5 bits (66), Expect = 7.3
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
G + + +D E +S EEE + D+++ +E + + E
Sbjct: 235 GQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 45.4 bits (108), Expect = 9e-05
Identities = 16/58 (27%), Positives = 38/58 (65%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
A + D + +D D D D + D +E+++E++D+++ ++E+EE++E +E E ++ +
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 45.4 bits (108), Expect = 1e-04
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE--EEEEEGEEEETETASSS 499
D + +D D D D++ D E++++++ D+E+EE++E +E E ++++ +E ++ +
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198
Query: 500 TAKND 504
A+ D
Sbjct: 199 QARKD 203
Score = 44.6 bits (106), Expect = 2e-04
Identities = 15/69 (21%), Positives = 37/69 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + + D D D++ D ++E+++++D ++E+EE++E +E E+ +++ S A
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Query: 502 KNDPQMVTV 510
+
Sbjct: 197 LRQARKDAK 205
Score = 44.2 bits (105), Expect = 2e-04
Identities = 15/69 (21%), Positives = 39/69 (56%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ N + +D D D ++ D +++++E++DE++++++ ++E+EE++E E E+
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Query: 496 ASSSTAKND 504
D
Sbjct: 184 DDDFVWDED 192
Score = 42.3 bits (100), Expect = 8e-04
Identities = 14/66 (21%), Positives = 38/66 (57%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + +D D D D++ D +++E++++D+ ++E+EE++E +E E+ ++++ +
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Query: 502 KNDPQM 507
Sbjct: 196 ALRQAR 201
Score = 41.5 bits (98), Expect = 0.001
Identities = 14/65 (21%), Positives = 38/65 (58%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + +D D ++ D E+++E+++D++ ++E+EE++E +E E+ +++ +
Sbjct: 135 DDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194
Query: 502 KNDPQ 506
+ Q
Sbjct: 195 EALRQ 199
Score = 40.0 bits (94), Expect = 0.004
Identities = 12/60 (20%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE---EEEEEEEEEEGEEEETETASS 498
D + + D D++ D ++++ ++D+++E+++E +++ ++E+EE +E + S
Sbjct: 123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Score = 38.8 bits (91), Expect = 0.011
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D + +D D D D++ D E++++++ ++E+EE++E +E E +
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 38.4 bits (90), Expect = 0.015
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 270
+ +D + D D++ D ++E+EE+ E +E E+ +++ S A +
Sbjct: 146 DIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAK 205
Score = 37.7 bits (88), Expect = 0.023
Identities = 13/60 (21%), Positives = 36/60 (60%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
++ + D + +D D D D + D +E+++E+D++++ ++E+ E++E + + +D
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFV 188
Score = 37.7 bits (88), Expect = 0.026
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE----EETETA 496
D E +D D D D + + E++E +E ++ ++++ +E++ E + + T TA
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATA 210
Score = 37.3 bits (87), Expect = 0.033
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
D + + D D D++ D ++E++++D+ ++E+EE+ E +E E S
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 33.4 bits (77), Expect = 0.54
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEED---EEEEEEEEEGEEEET 253
K + ++ ++ D + +D D D+ D ++E+++ED ++ ++E+EE +E +
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Query: 254 ETASS 258
S
Sbjct: 178 LEKLS 182
Score = 32.3 bits (74), Expect = 1.3
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 203 LGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA-----S 257
I + + + ED D D D+E + +E +E E ++++ E++ +
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDA 204
Query: 258 SSTAKNDP 265
TA DP
Sbjct: 205 KLTATADP 212
Score = 31.1 bits (71), Expect = 2.2
Identities = 11/71 (15%), Positives = 35/71 (49%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
K + ++ +D D D D + D ++++++ED++E++++++ ++E+ E
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Query: 257 SSSTAKNDPQM 267
+ +
Sbjct: 174 EAKELEKLSDD 184
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 45.0 bits (106), Expect = 1e-04
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++ ++D+ +E+ E E EEEE+EE EE E EETE + S KND
Sbjct: 82 KEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDW 141
Query: 506 Q 506
+
Sbjct: 142 R 142
Score = 43.9 bits (103), Expect = 2e-04
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
T Q + RR + + E + + +E ++ E++ +
Sbjct: 84 FKPTSTDQSLSEP--SRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDW 141
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE ++EE+E E EEEE + +
Sbjct: 142 RDAEECQKEEKEPEPEEEEKPKRGSL 167
Score = 41.2 bits (96), Expect = 0.002
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 3/99 (3%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
R + T + + + A N E E+ + + E E + E
Sbjct: 80 RQKEFKPTSTDQSLSEPSRRMQEDS---GAENETVEEEEKEESREEREEVEETEGVTKSE 136
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ + + EE ++EE+E E EEEE S N M
Sbjct: 137 QKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFM 175
Score = 40.0 bits (93), Expect = 0.004
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE- 482
R S A+ + + + D + ++ +E EEEE++E EE EE EE E
Sbjct: 72 ERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEG 131
Query: 483 ---EEEEEGEEEETE 494
E++ + E
Sbjct: 132 VTKSEQKNDWRDAEE 146
Score = 38.5 bits (89), Expect = 0.013
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E +E E EE+E+EE EE E EETE + S KND +
Sbjct: 102 EDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWR 142
Score = 37.3 bits (86), Expect = 0.026
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE-------EEEEEEEEEEEEEEEE 486
+ R + +++ +E+ +S EE EE EE E + + + EE ++EE+E
Sbjct: 94 SEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKE 153
Query: 487 EGEEEETETASSSTAKNDPQMVT 509
EEE + S +N+ + +T
Sbjct: 154 PEPEEEEKPKRGSLEENNGEFMT 176
Score = 37.3 bits (86), Expect = 0.028
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 451 DTSDEEYDSSEEEE----EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
D S E +E+ E +EEE+EE EE EE EE EG + + A+ +
Sbjct: 90 DQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQK 149
Query: 507 MVTVP 511
P
Sbjct: 150 EEKEP 154
Score = 35.4 bits (81), Expect = 0.10
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
D + ++ +E EEEE EE EE EE EE E T S
Sbjct: 90 DQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQK 138
Score = 34.6 bits (79), Expect = 0.18
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEG-----EEEE 492
E EE +++ EE + EEEE+ ++EE EEEE
Sbjct: 214 LELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEE 251
Score = 34.6 bits (79), Expect = 0.20
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 454 DEEYDSSEE-----EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+E EE EEEE+ ++EE + + EEEE+ EE E A ++
Sbjct: 217 EELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAA 267
Score = 34.6 bits (79), Expect = 0.23
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EEEE+ + EE + + EEEE+ +E E A+ K
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Score = 33.5 bits (76), Expect = 0.43
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE-----EEEEEEEEEEEEEEEGEEEETE 494
++ E + EE EEEE+ +EE EEEE+ +EE E E E
Sbjct: 211 EAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAE 268
Score = 33.1 bits (75), Expect = 0.61
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEE----EEEGEEEETETASSSTAK 502
EE D EEEE+ +EE E E E+ E+G E+ + T K
Sbjct: 240 EEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKKPFKCFTPK 291
Score = 33.1 bits (75), Expect = 0.61
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 428 SAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE-----EEEEEEEEE 482
N R A E +F+ ++ + E EE + + EE EEEE+ ++
Sbjct: 181 HTENTFSRGGAEGAQVEAG-KEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQ 239
Query: 483 EEEEEGEEEETE 494
EE + EE E
Sbjct: 240 EEADRKSREEEE 251
Score = 33.1 bits (75), Expect = 0.66
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
E + + + ++ + EE ++EE+E E EEE+ + S
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGS 166
Score = 32.3 bits (73), Expect = 1.1
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+EE ++EE + + EEEE+ +EE E E+ +
Sbjct: 231 EEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPED 276
Score = 31.9 bits (72), Expect = 1.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
++ E EE+EE +E EE EE EG + + A+ + P
Sbjct: 105 GAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEP 154
Score = 31.2 bits (70), Expect = 2.1
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E + + E ++++E + EE +++ EE + EEE + + E A +
Sbjct: 192 EGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKS 246
Score = 31.2 bits (70), Expect = 2.1
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
QE+ + +S E E+++ T E+ + + EE + EE+E E EE
Sbjct: 101 QEDS-GAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEE 159
Query: 249 EEEETET 255
E+ + +
Sbjct: 160 EKPKRGS 166
Score = 30.4 bits (68), Expect = 4.3
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E++D + +EE +EE E E E+ ++ E+ E+ + + T S+
Sbjct: 236 RRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDKKPFKCFTPKGSSL 295
Query: 502 K 502
K
Sbjct: 296 K 296
Score = 29.6 bits (66), Expect = 6.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ E +++E E EE +++ EE + EEEE ++ E S + + +
Sbjct: 200 KEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKR 253
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 45.2 bits (108), Expect = 1e-04
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ EED E EE +++E+E EEEE E S A
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDE--EEEEDENDDSLAADESE 215
Score = 40.9 bits (97), Expect = 0.002
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + E +E +++E+EEEEE+E ++ +E+E
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 40.9 bits (97), Expect = 0.002
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + ++ E+ + EE +++E+EEEEE+E + E+
Sbjct: 167 RELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADES 214
Score = 40.5 bits (96), Expect = 0.003
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E D D + EE + E EE D++E+EEEEE+E ++ E E
Sbjct: 167 RELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 39.8 bits (94), Expect = 0.006
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
D + + + EE +++E+ EEEE E S A
Sbjct: 170 IDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 35.9 bits (84), Expect = 0.080
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ D + + S EE +++EDEEEEE+E ++ +E E E+ E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEK 223
Score = 35.5 bits (83), Expect = 0.13
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+I + ED S+ E +E+EEEE++E ++ E E
Sbjct: 169 LIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 35.2 bits (82), Expect = 0.17
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
D + + + EE +++E++EEEE+E ++ +E E
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 34.8 bits (81), Expect = 0.17
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE + +D E E + + +E+ EE + S + D
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGRTD 103
Score = 34.8 bits (81), Expect = 0.21
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ + + ++ E E + + +E+ EEE + DP
Sbjct: 60 VEEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGRTD---DP 105
Score = 33.6 bits (78), Expect = 0.47
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ ED S+ E +E+EEEEEDE ++ +E E E+
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 32.5 bits (75), Expect = 1.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
D E+ E + ++E+EEEE++E ++ +E E E+
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 31.3 bits (72), Expect = 2.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE +++ E + + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 45.0 bits (106), Expect = 1e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEE----EEEEEEEEGEEEETETASSSTAKNDP 505
E ++ S ++ + E+ EE E E + ++ET +SS P
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Score = 44.6 bits (105), Expect = 2e-04
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE-EETETASSS 499
SE E E +S + DE E + ++ + E + +
Sbjct: 181 PTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEP 240
Query: 500 TAKNDPQ 506
+ P
Sbjct: 241 EREGPPF 247
Score = 44.2 bits (104), Expect = 2e-04
Identities = 14/60 (23%), Positives = 20/60 (33%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ G E + S + ED EE E E E + + ET T+S
Sbjct: 142 SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSS 201
Score = 43.4 bits (102), Expect = 4e-04
Identities = 10/67 (14%), Positives = 18/67 (26%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N +S S S E E ++ + E+ E
Sbjct: 122 NTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPP 181
Query: 500 TAKNDPQ 506
T++ +P
Sbjct: 182 TSEPEPD 188
Score = 41.5 bits (97), Expect = 0.001
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 2/95 (2%)
Query: 412 QKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSD-FDTSDEEYDSSEEEEEEEEDE 470
++T DT A R + + +G + E +S E
Sbjct: 67 RQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Query: 471 EEE-EEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E G E S + + N
Sbjct: 127 SPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Score = 41.5 bits (97), Expect = 0.002
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
S S D E S ++ ++ E E+E E E EG + S T
Sbjct: 199 TSSPPPQSPPDEPGE--PQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSHSYT 256
Score = 40.7 bits (95), Expect = 0.002
Identities = 9/61 (14%), Positives = 13/61 (21%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
S E + + + SS E E E + S
Sbjct: 105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPS 164
Query: 498 S 498
S
Sbjct: 165 S 165
Score = 40.7 bits (95), Expect = 0.003
Identities = 13/94 (13%), Positives = 20/94 (21%), Gaps = 1/94 (1%)
Query: 405 PTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEE 464
P P Q A R + + +R+G+ E +
Sbjct: 46 PAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTP 105
Query: 465 EEEEDEEEEEEEEEEEEEEEE-EEGEEEETETAS 497
EE E E + S
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPS 139
Score = 40.3 bits (94), Expect = 0.003
Identities = 8/53 (15%), Positives = 13/53 (24%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ S S E+ EE + E E + + E
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Score = 40.3 bits (94), Expect = 0.003
Identities = 10/65 (15%), Positives = 19/65 (29%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ + E + ++ + E+ EE E E E + S T
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Query: 501 AKNDP 505
+ P
Sbjct: 198 PTSSP 202
Score = 40.3 bits (94), Expect = 0.004
Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 417 DTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
T + + R+ A +R+ + E+S +E E
Sbjct: 50 APTTSGPQVRAVAEQGHRQTESDTE--TAEESRHGEKEERGQGGPSGSGSESVGSPTPSP 107
Query: 477 EEEEEEEEEEEGEEEETETASSSTAKNDP 505
EE E + ++ S A + P
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSP 136
Score = 40.3 bits (94), Expect = 0.004
Identities = 5/54 (9%), Positives = 10/54 (18%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ +S E S E E + +
Sbjct: 115 ASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQ 168
Score = 39.6 bits (92), Expect = 0.006
Identities = 10/57 (17%), Positives = 14/57 (24%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + S F E E E E E + + E + E
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPG 212
Score = 37.6 bits (87), Expect = 0.020
Identities = 7/66 (10%), Positives = 15/66 (22%), Gaps = 1/66 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ + S E ++ + E+ E E +
Sbjct: 130 SPASHSPPPSPPSHPG-PHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Query: 501 AKNDPQ 506
+ PQ
Sbjct: 189 SPGPPQ 194
Score = 37.3 bits (86), Expect = 0.031
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 441 GDSEYEDSDFDTSD--EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S + S D+ + E S E + + E + +E GE +
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPT 218
Score = 36.9 bits (85), Expect = 0.038
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E + + + E+ EE E E E + + E S
Sbjct: 147 HEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQS 206
Query: 498 SSTAKNDPQ 506
+PQ
Sbjct: 207 PPDEPGEPQ 215
Score = 36.9 bits (85), Expect = 0.041
Identities = 12/98 (12%), Positives = 21/98 (21%)
Query: 402 RGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSE 461
R TT R + H + + E + + + S
Sbjct: 36 RRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGS 95
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E EE E + + +S
Sbjct: 96 GSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPAS 133
Score = 36.5 bits (84), Expect = 0.053
Identities = 10/56 (17%), Positives = 15/56 (26%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S S E + + + SS E G E S + + N
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Score = 35.7 bits (82), Expect = 0.084
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEE-----EDEEEEEEEEEEEEEEEEEEGEEEETET 495
S + + S EE + E E + + E + +E E + +
Sbjct: 162 QPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
Query: 496 ASS 498
A S
Sbjct: 222 APS 224
Score = 35.7 bits (82), Expect = 0.088
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE-------ETETASSSTAKNDP 265
+ S + SS + ED EE E E E ++ET +SS P
Sbjct: 148 EPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
Score = 35.7 bits (82), Expect = 0.091
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
S D E T + + ++ E ++E E E EG + S T
Sbjct: 206 SPPDEPGEPQS-PTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSHSYT 256
Score = 35.3 bits (81), Expect = 0.13
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 211 GDSEYEDSDFDTSD-EEYDSSEEEEEEEDEEEEEEEEEGEE----------EETETASSS 259
SE E E SS + DE E + ++ E + +
Sbjct: 181 PTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEP 240
Query: 260 TAKNDPQ 266
+ P
Sbjct: 241 EREGPPF 247
Score = 34.9 bits (80), Expect = 0.15
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ D + + + E E+E E E E
Sbjct: 198 PTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 34.6 bits (79), Expect = 0.22
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
T+ + E+ + E + E EE E+EE G+ + + S S P
Sbjct: 49 PAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTP 105
Score = 34.2 bits (78), Expect = 0.28
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 431 NHNRRWNARNGDSE-YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ A +SD +T++E +EE + E E
Sbjct: 53 TSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE 112
Query: 490 EEETETASSSTAKNDPQ 506
E + + +T+ + P+
Sbjct: 113 ELASGLSPENTSGSSPE 129
Score = 33.8 bits (77), Expect = 0.36
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ E + + + + E+ EE E E E + S T + P
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSP 202
Score = 33.4 bits (76), Expect = 0.48
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+ E S +S EE E T +S
Sbjct: 83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSS 127
Score = 33.0 bits (75), Expect = 0.61
Identities = 12/77 (15%), Positives = 20/77 (25%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
Q E + ++H + G S+ S S EE E
Sbjct: 68 QTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSS 127
Query: 249 EEEETETASSSTAKNDP 265
E + + + P
Sbjct: 128 PESPASHSPPPSPPSHP 144
Score = 33.0 bits (75), Expect = 0.62
Identities = 6/46 (13%), Positives = 11/46 (23%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S +++ E+ EE E +E
Sbjct: 139 SPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
Score = 31.5 bits (71), Expect = 1.9
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 1/58 (1%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
S G E + + E+ EE E E + P
Sbjct: 142 SHPGPHEPAPPESHNPSPN-QQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETP 198
Score = 31.1 bits (70), Expect = 2.5
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
S + + S EE + E E + + E
Sbjct: 162 QPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPP 203
Score = 30.3 bits (68), Expect = 4.0
Identities = 7/53 (13%), Positives = 10/53 (18%), Gaps = 8/53 (15%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEE--------EEEEGEEEETETASSSTAKNDP 265
+ E +S E E E A + P
Sbjct: 107 PSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSP 159
Score = 29.6 bits (66), Expect = 6.5
Identities = 4/45 (8%), Positives = 9/45 (20%), Gaps = 2/45 (4%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
S + + S E E ++ +
Sbjct: 127 SPESPASHSPPPSPPSHPG--PHEPAPPESHNPSPNQQPSSFLQP 169
Score = 29.6 bits (66), Expect = 6.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 217 DSDFDTSDEEYDSSEEE--EEEEDEEEEEEEEEGEEEE 252
+ + + +E+ + E D E EE GE+EE
Sbjct: 49 PAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEE 86
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 44.1 bits (103), Expect = 1e-04
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 383 IGDILAKSFKWIYAKCCLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNG- 441
IG A + W+ L R + Q+ A +RRS H+R A
Sbjct: 24 IGRRAATALLWLSCSIALLRALASSNARAQQR------AAAQRRSFLNAHHRSAAAAAAA 77
Query: 442 ---------DSEYEDSDFDTS--DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+S++ED DF+ E +E++ + E + E E E + E E E E E
Sbjct: 78 QVFPEPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPE 137
Query: 491 EETETASSSTAKNDPQ 506
E +TA ++ + +P+
Sbjct: 138 TEPDTAPTTEPETEPE 153
Score = 39.8 bits (92), Expect = 0.003
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 207 KSSNGDSEYEDSDF------------DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ S +S++ED DF D D + ++ E E E D E E E E E E +
Sbjct: 82 EPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPD 141
Query: 255 TASSSTAKNDPQ 266
TA ++ + +P+
Sbjct: 142 TAPTTEPETEPE 153
Score = 35.6 bits (81), Expect = 0.068
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE-----EEEEEGEEE 491
EY++ DFDT E DS E E + E E E E E E E + E E E E+E
Sbjct: 106 EYDEDDFDT---ETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDE 155
Score = 35.2 bits (80), Expect = 0.092
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
EY++ DFDT E +E E + E E E E E E E + T T D VP
Sbjct: 106 EYDEDDFDT--ETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVVP 161
Score = 34.1 bits (77), Expect = 0.20
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++ E + E EE E +++ + EEEEEE+EEE ++ + DP
Sbjct: 192 STQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRRDP 245
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.5 bits (106), Expect = 2e-04
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ + + ++EEEEEE++E++EEE+EEEEEE EEE EEEE + +T
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 41.8 bits (99), Expect = 0.001
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ ++++EEEEEE+E++EEE+EEEE E EE + K
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 41.4 bits (98), Expect = 0.002
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+EE +++ + +EEEEEEE+E++EEE+EE EEE E K Q
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 41.4 bits (98), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
EE ++++ ++EEEEEEE+E++EEE+E EEEE E + + T
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 41.1 bits (97), Expect = 0.002
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+++ + +++EEE+EEE+E++EEE+EEEEEE EE+E E
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 40.7 bits (96), Expect = 0.003
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++ + ++E++++ +++EEEEEEE+E++EE +EEE E A + +
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 39.5 bits (93), Expect = 0.006
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ + +E++++ +++EEEEEEE+E++EEE EEEE E + +
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 39.1 bits (92), Expect = 0.009
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ ++ EEE+++++++ +++EEEEEEE E++E E
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 38.4 bits (90), Expect = 0.014
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E + F +E + EE+E++EE++EEEEEE EEE+EEEEE+ +++ T
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 37.2 bits (87), Expect = 0.036
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ +E++ EEE+ E++++ +++EEEEEE +E++ E
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 36.4 bits (85), Expect = 0.050
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E++ EEE +E++++ +++EEEEE E+E+ E + +
Sbjct: 419 AEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 36.4 bits (85), Expect = 0.050
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 181 LAMSFNLVQEEV--ISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEED 238
LA L +EE+ ++ K K + I + + E+ + + + ++EEEEE+
Sbjct: 388 LAAFLELTEEEIEFLTGSKKATKKIKKIVE-KAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Query: 239 EEEEEEEEEGEEEETETASSSTAKNDP 265
E+E++EEE+ EEEE +
Sbjct: 447 EKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 35.3 bits (82), Expect = 0.13
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
T ++ ++ E+ +++ EEE++E++++ + +EEE E + +
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 35.3 bits (82), Expect = 0.15
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 455 EEYDSSEEEEE--------------EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ +EEE E E E++ EEE++E++++ G+++E E
Sbjct: 390 AFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Query: 501 AKNDP 505
K +
Sbjct: 450 KKEEE 454
Score = 34.9 bits (81), Expect = 0.15
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E++ EE+++E++++ +++EEEE EE+E + +
Sbjct: 418 KAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 34.1 bits (79), Expect = 0.26
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ E+ E+ EEE++E++++ +++ EEEE E K +
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 33.4 bits (77), Expect = 0.50
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+ E++ EEE++E++++ +++E EEEE +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 32.2 bits (74), Expect = 1.1
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
+EE + +E++EEE EEEEEE EE +EEE E
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 31.4 bits (72), Expect = 2.2
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 196 VKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+K I + + + + + EE + E+E++EE++EEEEEE E E+EE E
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 256 ASSS 259
Sbjct: 472 KKKK 475
Score = 31.0 bits (71), Expect = 2.4
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
EEEEEEE E++EEE+EE EEE E K Q
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 31.0 bits (71), Expect = 2.6
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
+EE + E++EEE++EEEEE EEE EEEE + +T
Sbjct: 440 KEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 42.3 bits (100), Expect = 2e-04
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E+E +EE+E E++ ++ +EE EEEE+GE+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 38.5 bits (90), Expect = 0.003
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+E ++EEE E++ ++ +EE EEE + E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 37.7 bits (88), Expect = 0.006
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
D +EEEE E+D ++ +EE EEEE+ E+
Sbjct: 2 DEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 37.3 bits (87), Expect = 0.007
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E +EEEE +++ ++ +EE EEEE+ E+
Sbjct: 3 EPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 36.9 bits (86), Expect = 0.009
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+E +E+EE E++ ++ +EE EEEE E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 36.9 bits (86), Expect = 0.011
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E + EEEE E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 36.5 bits (85), Expect = 0.012
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETE 494
EDE +EEEE E++ ++ +EE EEEE
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDG 27
Score = 36.5 bits (85), Expect = 0.013
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E +EEEE E++ ++ +EE EEEE+ E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 35.8 bits (83), Expect = 0.024
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
++E D EE E++ +D +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 34.6 bits (80), Expect = 0.060
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E++ +EEEE E++ ++ +EE EEE+ E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 34.2 bits (79), Expect = 0.079
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
E+ EEE E++ D+ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 33.5 bits (77), Expect = 0.15
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
++E D EE E++ D+ +EE EEE + E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 33.5 bits (77), Expect = 0.18
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
DE + E E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 31.5 bits (72), Expect = 0.67
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
D DEE + ++ ++ +E+ EEEE+ E+
Sbjct: 2 DEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 31.1 bits (71), Expect = 0.94
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 424 RRRSSAMNHNRR--WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
R + +N R R + +D D D D ++D + + +E+ + ++E+
Sbjct: 68 RAAEARLNRRDRLLRRRRMPAAFLDDDDDD--DGDFDLTAQPRRRRRQYDEDRDADDEDI 125
Query: 482 EEEEEEGEEEE 492
+ EEE E+
Sbjct: 126 DPLEEELSLED 136
Score = 31.1 bits (71), Expect = 0.98
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEE 247
D DEE + ++ ++ ++E EEEE+ E
Sbjct: 2 DEPDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 30.8 bits (70), Expect = 1.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E + EEEE E+D ++ +EE E EEE+ E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAE-EEEDGE 28
Score = 30.4 bits (69), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
DE + E E++ +D +EE EEEE E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 29.6 bits (67), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEE 241
D + + D+ D EE EEEED E+
Sbjct: 4 PDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 29.2 bits (66), Expect = 3.8
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEE------EEEEEEEEEEEEEEEEGEEEETE 494
D + + D+ D EE EEEE+ E+ E + E + +E+G ++E++
Sbjct: 4 PDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESD 58
Score = 29.2 bits (66), Expect = 4.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
D +EE + ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 40.9 bits (96), Expect = 2e-04
Identities = 19/45 (42%), Positives = 24/45 (53%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
D E + EEEE+ E EE++ EEE +E EE E EE E
Sbjct: 32 DEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEED 76
Score = 40.1 bits (94), Expect = 4e-04
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE EE+ E EE + EEE +E EEEE EEE+ E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 39.3 bits (92), Expect = 7e-04
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
R N + E + + +EE + EE++ E+E +E EEEE EEEE+ E
Sbjct: 23 GRGNWGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 35.5 bits (82), Expect = 0.016
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA--KNDPQMVT 509
S ++E E EE+ EEEE+ E EE++ EE E + + + +T
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMT 80
Score = 33.9 bits (78), Expect = 0.055
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D E EE+ +EEE+ E EE++ EEE E E
Sbjct: 32 DEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEE 70
Score = 33.2 bits (76), Expect = 0.097
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +E EE+ EEE++ E EE++ EEE +E EEE
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEV 71
Score = 32.8 bits (75), Expect = 0.16
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
EE + EEE +E EEEE EE E++E
Sbjct: 51 EEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+ E ++++E EE+E EEEE++E
Sbjct: 52 EKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 30.1 bits (68), Expect = 1.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
S D E ++ +EE + EE++ E+E +E E EE E E T
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMT 80
Score = 29.7 bits (67), Expect = 1.7
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVT 269
D E + EEEE+ + EE++ EE +E + + + +T
Sbjct: 32 DEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMT 80
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 44.3 bits (104), Expect = 2e-04
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
G +E E+ + D+E E E E EE + + +E EE+EE+ E EE E
Sbjct: 280 GAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENE 333
Score = 43.5 bits (102), Expect = 3e-04
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
A + E + D + EE +++E +EE + + +E EE+EE++E EE E
Sbjct: 282 AEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 42.0 bits (98), Expect = 0.001
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM--VTVP 511
E + + + +E EE+EE++E EE E E +E + QM T P
Sbjct: 304 AEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMESATNP 363
Query: 512 I 512
I
Sbjct: 364 I 364
Score = 40.5 bits (94), Expect = 0.003
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E ++ +++ + E E +E+ + + +E EE+EE++E EE E T
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHT 336
Score = 40.1 bits (93), Expect = 0.004
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E + E +EE + +E EE+EE++E E E TE
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
Score = 37.8 bits (87), Expect = 0.020
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E S+ D ++ + E +EE + + +E EE+EE++E E E
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENER 334
Score = 37.0 bits (85), Expect = 0.038
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEE---------------YDSSEEEEEEEEDEEEEE 474
R + E+ + EE E+++EE E+ E +
Sbjct: 249 GEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHK 308
Query: 475 EEEEEEEEEEEEEGEEEETET 495
EE + + +E E +EE+ E
Sbjct: 309 EEVQSDRPDEIGEEKEEDDEN 329
Score = 36.6 bits (84), Expect = 0.045
Identities = 15/68 (22%), Positives = 31/68 (45%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ E+ + S+E+ D E E +E E ++E+++EE E E EE +++
Sbjct: 259 KEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDE 318
Query: 499 STAKNDPQ 506
+ +
Sbjct: 319 IGEEKEED 326
Score = 36.2 bits (83), Expect = 0.056
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 203 LGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
L + + + E + D + EE +++E +EE + +E E +EE+ E
Sbjct: 277 LDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDEN 329
Score = 36.2 bits (83), Expect = 0.057
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ E ++ +E +E EE++E++E EE E E +E E E
Sbjct: 294 KEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEK 348
Score = 35.4 bits (81), Expect = 0.10
Identities = 16/73 (21%), Positives = 31/73 (42%)
Query: 426 RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
A+ ++ G+ + D D E ++ E E ++E ++EE E E +EE +
Sbjct: 253 SRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQ 312
Query: 486 EEGEEEETETASS 498
+ +E E
Sbjct: 313 SDRPDEIGEEKEE 325
Score = 35.4 bits (81), Expect = 0.11
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E E + + DE EE+EE+ E EE E
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENE 333
Score = 32.8 bits (74), Expect = 0.73
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
G +E E+ + D+E E E E +EE + + E E + +N+
Sbjct: 280 GAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 32.0 bits (72), Expect = 1.5
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ + + E+EE++E +E E E +E E E+G EE+ S+T
Sbjct: 309 EEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMESAT 361
Score = 29.3 bits (65), Expect = 9.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ + E+ + + +E S+ +E +E+EE++E E E TE
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 44.3 bits (104), Expect = 3e-04
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+E + ++ E E++ EE E E+E+E+E E E E E E ASSS+ ++ +M
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSS--HESRM 633
Score = 36.6 bits (84), Expect = 0.066
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
E + EE E E E+E+E E E E E A +S++ ++ +M
Sbjct: 591 EAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRM 633
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 43.8 bits (103), Expect = 3e-04
Identities = 19/68 (27%), Positives = 29/68 (42%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + G+ E E D+ ++ ++ E+ E E EE E EEE E+ E E
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397
Query: 497 SSSTAKND 504
S +D
Sbjct: 398 HSKRICDD 405
Score = 40.0 bits (93), Expect = 0.005
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+N+ + N +Y E+ E+ E E EE E EEE E+ E E
Sbjct: 336 LNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Query: 490 EEETETASSSTAKNDP 505
+ ++ +
Sbjct: 396 NDHSKRICDDDELENH 411
Score = 40.0 bits (93), Expect = 0.006
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
I+ SS+ E + D ++ + E E + EE E EEE E+ E E S +D
Sbjct: 352 ILDSSSVPLEKQFDD----ILYFE--KMEIENRNPEESEHEEEVEDYEDENDHSKRICDD 405
Score = 38.0 bits (88), Expect = 0.022
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+E + + + E EEE E+ EDE + + +++E E +E +
Sbjct: 367 ILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVVGF 426
Query: 502 KNDPQMVT 509
+N+ VT
Sbjct: 427 RNERSYVT 434
Score = 37.3 bits (86), Expect = 0.035
Identities = 15/70 (21%), Positives = 26/70 (37%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
N + R+ + S + FD E EE E EEE E+ E+E
Sbjct: 337 NNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEN 396
Query: 483 EEEEEGEEEE 492
+ + +++
Sbjct: 397 DHSKRICDDD 406
Score = 30.0 bits (67), Expect = 5.8
Identities = 14/69 (20%), Positives = 28/69 (40%)
Query: 196 VKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+ + ++L K N ++E +D D+S + ++ ++ E E E E E
Sbjct: 329 IGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEE 388
Query: 256 ASSSTAKND 264
+ND
Sbjct: 389 VEDYEDEND 397
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 43.4 bits (102), Expect = 3e-04
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
RNG+ E +DF E+ E E++E + EE +EE E+E E E E A
Sbjct: 310 RNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEM 369
Query: 499 S 499
Sbjct: 370 E 370
Score = 41.1 bits (96), Expect = 0.002
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E + D + S +EE E+E E +E EE E E E ++ E + +
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAET 386
Score = 39.1 bits (91), Expect = 0.008
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E ++ D T + + SE+E E +E EE E E E + ++ E
Sbjct: 336 EKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 37.2 bits (86), Expect = 0.033
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E ++ D T +E D E+E E DE EE E E E +
Sbjct: 336 EKQEGDVVT-EESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
Score = 36.8 bits (85), Expect = 0.036
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE--EEEEEEEEEEEGEEEETET 495
E + E + EE E+E E +E EE E E E + ++ E ET
Sbjct: 331 VVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAET 386
Score = 36.4 bits (84), Expect = 0.054
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
GD E+S +DEE + E +E +E E E E + ++ E E E
Sbjct: 340 GDVVTEES----TDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 35.3 bits (81), Expect = 0.11
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ + D + S +E E E +E EE E E E + ++
Sbjct: 335 VEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 35.3 bits (81), Expect = 0.12
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 210 NGDSEYEDSDF-DTSDEEYDSSE---------EEEEEEDEEEEEEEEEGEEEETETASSS 259
NG+ E +DF D ++ ++ E EE DEE E+E E E E A
Sbjct: 311 NGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEME 370
Score = 33.7 bits (77), Expect = 0.31
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
+ + D + S +E E E +E EE E E E + + A
Sbjct: 335 VEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLA 380
Score = 32.6 bits (74), Expect = 0.91
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ E + E + EE E+E + +E EE E E E
Sbjct: 325 YEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLE 373
Score = 31.4 bits (71), Expect = 2.1
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 181 LAMSFNLVQEE--VISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEED 238
L + N ++E + I + + +++ GD E+S + S++E + E EE
Sbjct: 308 LERNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVA 367
Query: 239 EEEEEEEEEGE 249
E E E + +
Sbjct: 368 EMELLEVQVDD 378
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 41.0 bits (96), Expect = 3e-04
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ +D D E+ S E EE E++ E +E + E E +EE+
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQ 47
Score = 34.5 bits (79), Expect = 0.054
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
+ D E+E E + EE EE+ E +E +G E E P+ T +T
Sbjct: 2 YNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPYMT 61
Score = 34.1 bits (78), Expect = 0.086
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 216 EDSDFDTSDEEYDSSEEEEE--EEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
+ +D D E+ S E EE EED E +E T P
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPY 59
Score = 32.5 bits (74), Expect = 0.25
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 456 EYDSSEEEEEEEEDEEEEEEE-EEEEEEEEEEEGEEEETET 495
+Y+ + E+E E E EE EE+ E +E + E
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGEN 41
Score = 30.6 bits (69), Expect = 1.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ + D YED + EE + E ++ + E E++EE+E
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQE 48
Score = 30.2 bits (68), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
D YED + EE + E DE + E ++EE E
Sbjct: 5 MDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPV 50
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 40.8 bits (96), Expect = 4e-04
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E D + D +++ +D+ +EE+ +EE++E+EE+E
Sbjct: 85 EKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
+ D D D D++ ++ +EE+ DEE++E+EE+EE
Sbjct: 94 FMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 36.9 bits (86), Expect = 0.008
Identities = 13/61 (21%), Positives = 31/61 (50%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
R W + E + D++ + +++ D++ +++ +EE+ +EE+ E+EE
Sbjct: 68 RSWYPVDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEED 127
Query: 494 E 494
E
Sbjct: 128 E 128
Score = 35.4 bits (82), Expect = 0.029
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 183 MSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEE 242
+ + EE+I + K K +GD + D D D+ + +EE++EDEE+E
Sbjct: 71 YPVDEIDEEIIPLEEKFDKKK--KKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Query: 243 E 243
E
Sbjct: 129 E 129
Score = 35.0 bits (81), Expect = 0.036
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 449 DFDTSDEEYDS------------SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D DEE + +++ +D+ +++ +EE+ +EE++ +EE+ E
Sbjct: 72 PVDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.7 bits (75), Expect = 0.26
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+ D D D D++ ++ +EE+ +EE++E+EE EE
Sbjct: 94 FMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.3 bits (74), Expect = 0.30
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E D + D +++ D++ +EE+ + E++E E
Sbjct: 85 EKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDE 125
Score = 30.4 bits (69), Expect = 1.4
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D D+ D +++ DEE+ +EE++ +EE+ E
Sbjct: 94 FMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 28.1 bits (63), Expect = 8.9
Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 219 DFDTSDEEYDSSEEEEE-------EEDEEEEEEEEEGEEEETE 254
D DEE EE+ + + D++ +++ +++ E
Sbjct: 72 PVDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDE 114
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 43.4 bits (102), Expect = 4e-04
Identities = 13/50 (26%), Positives = 37/50 (74%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+E + EEE++++E+++++++E+E+++++++ E++E E ST +D
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Score = 39.6 bits (92), Expect = 0.006
Identities = 14/49 (28%), Positives = 36/49 (73%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EE D EE++++++DE+E++++++++E++E+E+ ++ SS+ N
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGN 99
Score = 39.2 bits (91), Expect = 0.007
Identities = 11/50 (22%), Positives = 38/50 (76%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E + +++EE+++D+++E+E++++++++E++E E+++ T ++ +D
Sbjct: 48 EAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
Score = 38.4 bits (89), Expect = 0.014
Identities = 11/54 (20%), Positives = 34/54 (62%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + ++ D D D+E + ++++++E+DE+E++++ ++ ++G E + E
Sbjct: 52 EEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEA 105
Score = 36.5 bits (84), Expect = 0.057
Identities = 9/51 (17%), Positives = 37/51 (72%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+E+ D +++++++EDE++++++++E++E+E+++ ++++ + D
Sbjct: 52 EEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102
Score = 35.7 bits (82), Expect = 0.097
Identities = 15/66 (22%), Positives = 37/66 (56%)
Query: 199 IAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
+ K I K E + D +E+ D ++E+E++D+++++E++E E+++ T
Sbjct: 32 MKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHD 91
Query: 259 STAKND 264
++ +D
Sbjct: 92 DSSADD 97
Score = 35.4 bits (81), Expect = 0.13
Identities = 18/67 (26%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
AI K LG K + ++ E+ D + D++ D +E+++++D++E++E+E+ ++
Sbjct: 36 NAIRK-LG--KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Query: 257 SSSTAKN 263
SS+ N
Sbjct: 93 SSADDGN 99
Score = 33.8 bits (77), Expect = 0.35
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+E EEE EEE+++EE+++++ +E+E + ++ +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 32.7 bits (74), Expect = 0.81
Identities = 15/80 (18%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 181 LAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEE 240
L ++ + +E I + A+ + + + + + +D D + D++ D +E++E+ED++
Sbjct: 26 LTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Query: 241 EE-----EEEEEGEEEETET 255
+ ++G E + E
Sbjct: 86 DSTLHDDSSADDGNETDNEA 105
Score = 32.7 bits (74), Expect = 0.83
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
D + ED D D ++E D ++++E++EDE++++ ++ ++ + E A S
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEAGFADS 110
Score = 29.6 bits (66), Expect = 7.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
EE EEED++EE+++++ +E+E + ++ +
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 29.2 bits (65), Expect = 8.7
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
D + +D D D D++ D +E+E++++ ++ ++ E + E G
Sbjct: 58 EDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEAG 106
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 42.8 bits (101), Expect = 4e-04
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
T DEE + +E+EE++ EE+E E EEEE+EEGE
Sbjct: 35 TEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 41.7 bits (98), Expect = 0.001
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
F ++ + + E E++ +++EE+E EE+E E EE E+EE E +S A
Sbjct: 26 GPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPDA 79
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
D +E+EE E++ +E+EE+E EE+E E EEEE E + +
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPD 78
Score = 38.6 bits (90), Expect = 0.008
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
G + + E D +E+EE+E EE+E E EEEE+EE E
Sbjct: 22 GNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 37.4 bits (87), Expect = 0.022
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 204 GIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEE-----EEGEEEETETASS 258
++ NG + + T DEE + +E+EEDE EE+ EE E+EE E +S
Sbjct: 17 VLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKAS 76
Query: 259 STA 261
A
Sbjct: 77 PDA 79
Score = 35.9 bits (83), Expect = 0.054
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+ G + + E D +E+EE+E EE+E E EEEE E + +
Sbjct: 23 NGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPD 78
Score = 31.3 bits (71), Expect = 1.6
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+D E+EE E++ +E+EE+ E + + + D
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEED 68
Score = 29.7 bits (67), Expect = 5.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
E+EE ED+ +E+EE+ E + + + D
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEED 68
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 41.7 bits (98), Expect = 4e-04
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ E D +++ D ++E E E++E +E+E+++E+EE+E ++
Sbjct: 128 EDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + D + D ++E+E++DE E E++E +E+E++ E+EE E
Sbjct: 125 EEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEE 173
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E D D+E D+ EE +E+E D +E++EEEE++E + ++ ++E E
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDE 144
Score = 37.4 bits (87), Expect = 0.009
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 15/69 (21%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEE-------EDEEEEEEEEEE--------EEEEEEE 486
+E+ D D D + D EEE++E +DE+E+++E E +E+E+++
Sbjct: 107 VDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDD 166
Query: 487 EGEEEETET 495
E EE+E +
Sbjct: 167 EDEEDEEDK 175
Score = 36.7 bits (85), Expect = 0.018
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 442 DSEYEDSDFDTSDE-EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E F+ DE E D E++EEEE+DE + ++E ++E+E+++E E E
Sbjct: 102 AKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIE 155
Score = 34.3 bits (79), Expect = 0.10
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 183 MSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEE---DE 239
+ + EE+ + + +E+ D D D + D EEE++E D+
Sbjct: 82 YPLDEIDEEIQAMTEKKDIK----AKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDD 137
Query: 240 EEEEEEEEGEEEE 252
E ++E+E+ +E
Sbjct: 138 ENDDEDEDDDEIV 150
Score = 33.6 bits (77), Expect = 0.22
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE--EEEEGEE 490
+ +W R S Y D DEE + E+++ + ++E + EE +E+E +E+ EE
Sbjct: 73 DNKWGLR---SWYP---LDEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEE 126
Query: 491 EETETASS 498
EE + S
Sbjct: 127 EEDDEVDS 134
Score = 33.2 bits (76), Expect = 0.28
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEE---EDEEEEEEEEEGEEEETET 255
+ E D +++ D ++E E ED+E +E+E++ E+EE E
Sbjct: 128 EDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEE 173
Score = 31.6 bits (72), Expect = 0.97
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
N D + +D + E D +E+E+++EDEE+EE++
Sbjct: 139 NDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 29.0 bits (65), Expect = 7.6
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+ + + ++ D + + + E +E+E+D+E+EE+EE+
Sbjct: 136 DDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEED 174
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 43.0 bits (101), Expect = 5e-04
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE-----EEEEEEGEEEETETASSSTAKNDP 505
T SS + E EEDEEEEEEEEEEEE E+ + T+ S T +
Sbjct: 213 RTPPNSSSSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESITVPSRR 272
Query: 506 Q 506
Sbjct: 273 H 273
Score = 39.1 bits (91), Expect = 0.006
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 223 SDEEYDSSEEEEEEEDEEEE------EEEEEGEEEETETASSSTAKNDPQ 266
SD E + EEEEEEE+EEEE E+ + T+ S T +
Sbjct: 224 SDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESITVPSRRH 273
Score = 37.2 bits (86), Expect = 0.025
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETAS---SSTAKNDPQMVTVPIT 273
SS + E +E+EEEEEEE EEEE + + ++ N + IT
Sbjct: 220 SSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESIT 267
Score = 36.1 bits (83), Expect = 0.057
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
T SS + E E++EEEEEEEE EEE
Sbjct: 213 RTPPNSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 34.1 bits (78), Expect = 0.24
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
+ E EE+EEEEEEEEEE E + ++ N + IT
Sbjct: 224 SDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTSESIT 267
Score = 34.1 bits (78), Expect = 0.28
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEE 252
SS + E EE+EEEEEE EEEE
Sbjct: 219 SSSSGSDSESEEDEEEEEEEEEEE 242
Score = 31.1 bits (70), Expect = 2.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEED 469
R R + S D+ EE + EEEEEEEE+
Sbjct: 208 PRLGLRTPPNSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 3.0
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 474 EEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
+ E EE+EEEEE EEEE E + K T
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAST 262
Score = 30.3 bits (68), Expect = 3.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 273
SS + + EE+EEEEE EEEE E + K T
Sbjct: 218 SSSSSGSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAST 262
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 41.3 bits (97), Expect = 6e-04
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E EE EEEE++ EEE EEEEEE + GEEEE + S
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Score = 40.5 bits (95), Expect = 9e-04
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
S D + + E++EEEE EEEEE+ EEE EEEEEE E D
Sbjct: 62 SSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYD 118
Score = 39.3 bits (92), Expect = 0.002
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EE E++EEE+ EEEEE+ EEE EEEEE + + + P
Sbjct: 67 EEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTP 123
Score = 38.2 bits (89), Expect = 0.005
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+E + S EEEEE+ +EE EEEEEE + EE EE+ T +
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEE 125
Score = 38.2 bits (89), Expect = 0.006
Identities = 22/51 (43%), Positives = 26/51 (50%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EEE EEE+E+ EEE EEEEEE + EEE E S P+
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPE 124
Score = 37.0 bits (86), Expect = 0.016
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ EE E E++EEEE EEEE + EE + P
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPF 106
Score = 35.1 bits (81), Expect = 0.062
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + ++++EE + EEE EEEE+E + EEEEE+ + E E
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEE 125
Score = 33.5 bits (77), Expect = 0.24
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ +EE + EEEE+ EE+ EEEEEE + EEEE + + + + + +
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREE 128
Score = 33.2 bits (76), Expect = 0.26
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E+ + +E+ + EEEEEE EEEEE+ + +E EE E
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEERE 127
Score = 32.4 bits (74), Expect = 0.53
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D E E E++E+EE EEEEE EEE E
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEE 100
Score = 32.0 bits (73), Expect = 0.59
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + + E + + EEE EE+EEE + EEEEE+ + +E
Sbjct: 70 RLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Score = 31.6 bits (72), Expect = 1.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
+E + S EEEEE+ EEE EEEEE + + + P
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTP 123
Score = 31.6 bits (72), Expect = 1.0
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
E+ + E EEEE++ EEE EEE EE + ++ +P
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPT 122
Score = 31.2 bits (71), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 446 EDSDFDTS----DEEYDSSEEEEEEEEDEEEEEE 475
ED DFD S +EEYD + E++EE+ ++E
Sbjct: 145 EDKDFDYSKVDENEEYDDLKIVEQDEEERYFDDE 178
Score = 30.9 bits (70), Expect = 1.7
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+ S EE + EEE EE+EEE + GEEEE + S
Sbjct: 80 EESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Score = 30.9 bits (70), Expect = 1.9
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE-------GEEEE 492
+ E E+ + + + EEE+ + DE EE EE EE E GE+++
Sbjct: 91 EEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQRFLSGEDKD 148
Score = 29.7 bits (67), Expect = 3.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE-EEEEEEGEEEETE 494
+ E + + + +EEY EEEEED + +E EE EE EE E +
Sbjct: 86 EEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQ 139
Score = 29.7 bits (67), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ +EE + EEEE+ E+E EEEEEE E D
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYD 118
Score = 29.7 bits (67), Expect = 3.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E EE EEE+E+ EEE EE EEE + D
Sbjct: 74 LEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGD 115
Score = 29.3 bits (66), Expect = 5.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
D E E+ + + + EEEEE+ + +E EE EE EE E
Sbjct: 87 EEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISE 136
Score = 28.9 bits (65), Expect = 6.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E + + E + + EEE E+EEEE + EEE E S P+
Sbjct: 70 RLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPE 124
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 6/36 (16%)
Query: 216 EDSDFDTS----DEEYDSSEEEEEEEDEEEEEEEEE 247
ED DFD S +EEYD + + E+DEEE ++E
Sbjct: 145 EDKDFDYSKVDENEEYD--DLKIVEQDEEERYFDDE 178
Score = 28.9 bits (65), Expect = 7.9
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
D+++D S+ +E EE D+ + E++EEE ++E
Sbjct: 146 DKDFDYSKVDENEEYDDLKIVEQDEEERYFDDE 178
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 42.2 bits (99), Expect = 6e-04
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
E + E EEE+E EEEEEE EEEEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 41.4 bits (97), Expect = 0.001
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E E E+E+E EEEEEE EEEEE E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 38.0 bits (88), Expect = 0.013
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 21/77 (27%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEE---------------------EEEEEEEEGEEE 491
EE D S EEEEEE +EEEE + E++ E E +E+ EE
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEE 65
Query: 492 ETETASSSTAKNDPQMV 508
E + + + ++V
Sbjct: 66 EAKRKAEERKRETLKIV 82
Score = 37.2 bits (86), Expect = 0.024
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEE----------------EEEEEEEEEEEEEE 486
E E+ D +EE +S EEEE + ED+ E +E E E +E+ E
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 487 EGEEEETETASSSTAK 502
E + + E T K
Sbjct: 65 EEAKRKAEERKRETLK 80
Score = 35.7 bits (82), Expect = 0.075
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
EE D S EEEEEE EEEEE + E + E
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 35.7 bits (82), Expect = 0.076
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 18/70 (25%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEE------------------EEEEEEEGEEEE 492
+ + E + EEEEEE EEEEE + E++ +E E E +E+
Sbjct: 3 EVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKA 62
Query: 493 TETASSSTAK 502
E + A+
Sbjct: 63 LEEEAKRKAE 72
Score = 35.3 bits (81), Expect = 0.088
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
E + E EEE+E EEEEEE E EEEET++
Sbjct: 1 ETEVLELEEEDESGEEEEEESE-EEEETDS 29
Score = 35.3 bits (81), Expect = 0.095
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E + E EEE+E EEEEEE EEEET++
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDS 29
Score = 32.2 bits (73), Expect = 0.95
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETE 254
EEE+E EEEEEE EE EE ++E
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSE 30
Score = 31.4 bits (71), Expect = 1.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
E E E EEE+E EEE EE E E + S +P++
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRL 37
Score = 30.3 bits (68), Expect = 3.9
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 412 QKTIQDTTGAYNRRRSSA----------MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSE 461
+ A R+R + + +R + + D+D + +EEY++ +
Sbjct: 62 ALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWK 121
Query: 462 EEEEEEEDEEEEEEEEEEEEEEE--------EEEGEEEETETASSSTAKND 504
E + + EE EE E E+ E EEE E + ST K
Sbjct: 122 LRELKRIKRDREEREEMEREKAEIEKMRNMTEEERRAELRKNPKVSTNKAK 172
Score = 30.3 bits (68), Expect = 4.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 473 EEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
E E E EEE+E E EEEE+E + +++D + P+
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPV 40
Score = 30.3 bits (68), Expect = 4.1
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 234 EEEEDEEEEEEEEEGEEEETETAS 257
E EE++E EEEEE EEE ET S
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDS 29
Score = 29.9 bits (67), Expect = 4.3
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 22/85 (25%)
Query: 442 DSEYE---DSDFD---------TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE------- 482
+SE E DS+ D T ++ + +E E E E+ EEE + + E
Sbjct: 20 ESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETL 79
Query: 483 ---EEEEEGEEEETETASSSTAKND 504
EEE + E E + + A D
Sbjct: 80 KIVEEEVKKELELKKRNTLLEANID 104
Score = 29.9 bits (67), Expect = 5.1
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASS 498
E E E EEE+E EEEE E EE E S
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDS 29
Score = 29.9 bits (67), Expect = 5.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
E E + + DE + EEE EEE+E + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 29.5 bits (66), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETE 254
EEE+E +EEEEE EEE E + +
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSED 31
Score = 29.5 bits (66), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
E E E +EE+E EEE EE E E + S +P++
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRL 37
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 41.6 bits (98), Expect = 6e-04
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 435 RWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
RWN Y+ S++ EEY+ EE ++ + ++E++ ++ + E+E+EE +E
Sbjct: 10 RWNG------YDPSEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDM 63
Query: 495 TASSSTAKN 503
S S +
Sbjct: 64 GDSDSKTRT 72
Score = 30.5 bits (69), Expect = 2.7
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 215 YEDSDFDTSDEEYDSSEEE------EEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
Y+ S++ EEY+ EE ++E+D ++ + E+E EE + + +
Sbjct: 14 YDPSEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMG-DSDSKTRT 72
Query: 269 TVP 271
TV
Sbjct: 73 TVR 75
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 39.3 bits (92), Expect = 7e-04
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDE---EEEEEEEEEEEEEEEEEGEE 490
Y D D D D E ++ +EEE E+ EEE E+EEE E
Sbjct: 51 RYAYRDDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 36.6 bits (85), Expect = 0.007
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 207 KSSNGDSEYEDSD-----FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
K + +D D EE S ED EEE E+E E E+
Sbjct: 50 KRYAYRDDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 30.8 bits (70), Expect = 0.80
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 31/101 (30%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEY------------------------D 458
R +R D + DF D+E D
Sbjct: 1 TSPRLERSRRSRDDYDEEEDED--MDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDD 58
Query: 459 SSEEEEEEEEDEEEEEEEE-----EEEEEEEEEEGEEEETE 494
+++ E + +EEE E+ EEE +EEE E
Sbjct: 59 DDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEERE 99
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 39.0 bits (91), Expect = 7e-04
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
DT E D EEEEEEEED+ E+ +E+E +E E E +
Sbjct: 2 LDTEAEV-DDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRR 42
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D E + +EEEEEEE+E++ E+ +E+E +E E E++
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDR 41
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ E E +++EEEEEEEE++ E+ +E+ +E E
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAE 38
Score = 36.3 bits (84), Expect = 0.008
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
DT E D EEEEEEED+ E+ +E+ +E E
Sbjct: 2 LDTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAE 38
Score = 34.3 bits (79), Expect = 0.033
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D+ E ++EEE+EEEEE++ E+ +E+E E E +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAED 39
Score = 32.8 bits (75), Expect = 0.10
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E E+ + D D + +E E ED+ + E+EEEE+ EE
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEY 64
Score = 31.6 bits (72), Expect = 0.28
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ E E ++EEEEEEEEE+ E+ ++
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDE 30
Score = 30.9 bits (70), Expect = 0.50
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETAS 257
E E +++EEEEEEEE+ E+ ++
Sbjct: 4 TEAEVDDEEEEEEEEEDDLEDLSDEDE 30
Score = 30.9 bits (70), Expect = 0.62
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE--EEEEEEEEEEEEGEEE 491
D E E+ + + D E S E+E +E + E++ + E+EEEE EE
Sbjct: 9 DDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEE 60
Score = 30.5 bits (69), Expect = 0.65
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D + +EE + + E+ +EDE +E E E++ + E+ E
Sbjct: 7 EVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEE 54
Score = 28.2 bits (63), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
D+E E D + +EE + E+ +EDE +E E E +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRR 42
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 42.0 bits (99), Expect = 0.001
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ SE EE +D+ EEE ++E E E E E
Sbjct: 236 EMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 40.5 bits (95), Expect = 0.003
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
S +E E EE +++ EEE ++E EG E E E
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 37.8 bits (88), Expect = 0.018
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E EE +++ EEE ++E E E E E K
Sbjct: 238 SEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRK 278
Score = 37.8 bits (88), Expect = 0.019
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E E E E+ +++ EEE ++E E E E +
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKR 277
Score = 37.4 bits (87), Expect = 0.026
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
D E EE D++ EEE ++E E E E
Sbjct: 229 PEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 37.0 bits (86), Expect = 0.038
Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 14/83 (16%)
Query: 183 MSFN--------LVQEEVISNVKAI------AKHLGIIKSSNGDSEYEDSDFDTSDEEYD 228
S+N L+QEE VKA + + E
Sbjct: 186 ASYNPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEES 245
Query: 229 SSEEEEEEEDEEEEEEEEEGEEE 251
+ EEE +DE E E E
Sbjct: 246 DDDGEEESDDESAWEGFESEYEP 268
Score = 36.2 bits (84), Expect = 0.068
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ + E +E E +E +++ EEE ++E E E E K
Sbjct: 218 RVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPK 276
Score = 35.5 bits (82), Expect = 0.11
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 17/88 (19%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEE------------ 471
++ M + E+SD D +E D S E E E E
Sbjct: 221 EKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTK 280
Query: 472 -----EEEEEEEEEEEEEEEEGEEEETE 494
E+ +E E E +EE++ +++ +
Sbjct: 281 AQRNKEKRRKELEREAKEEKQLKKKLAQ 308
Score = 34.3 bits (79), Expect = 0.27
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
Y+ S E+ +E EE E+E + E++ +E E EE++ E +
Sbjct: 188 YNPSFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMA 228
Score = 34.3 bits (79), Expect = 0.27
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+E + EE +++ EEE ++E E P
Sbjct: 231 ASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRP 275
Score = 31.6 bits (72), Expect = 1.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
DE + EE +++ EEE ++E E E+E
Sbjct: 235 DEMSEGLLEESDDDGEEESDDESAWEGFESE 265
Score = 29.7 bits (67), Expect = 6.1
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
E + + SD++ + ++E + E E E + +
Sbjct: 235 DEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPK 276
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 42.1 bits (99), Expect = 0.001
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
EEEEEEE+EEEEE E E EE G E ++ ++V
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPAAGGGGGIKIV 449
Score = 40.6 bits (95), Expect = 0.003
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E EEEE+EEEEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 38.6 bits (90), Expect = 0.013
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E +EEEEEEEEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 37.1 bits (86), Expect = 0.032
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E EE+EEEEEEEEEE E E E
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 36.3 bits (84), Expect = 0.054
Identities = 18/41 (43%), Positives = 19/41 (46%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E EEEEEEEEEEEEE E E P+M
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPA 439
Score = 35.2 bits (81), Expect = 0.14
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
E EEE+EEEEEEEEE E E P+M
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPA 439
Score = 35.2 bits (81), Expect = 0.14
Identities = 18/45 (40%), Positives = 20/45 (44%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E + EEEEEEEE+EE E E EE E E A
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPAAGGG 443
Score = 34.0 bits (78), Expect = 0.32
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
E + EEEEEEE+EEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 31.3 bits (71), Expect = 2.2
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 456 EYDSSEEEEEEEEDEEEE----EEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E D++ +E E +E+ E EEEEEEEEEE EE A ++ +P
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMP 436
Query: 512 I 512
+
Sbjct: 437 M 437
Score = 30.6 bits (69), Expect = 4.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEE 479
++EE + EEEEEE + E EE
Sbjct: 401 WAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 30.6 bits (69), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
++EE + EEEEEE E E EE
Sbjct: 401 WAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 30.2 bits (68), Expect = 5.5
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 454 DEEYDSSEEEEEEEEDEE-----EEEE----EEEEEEEEEEEEGEEEETETASSSTAKND 504
++ YD EE+ +E +E+ E EEEEEEEE EEEE A + +
Sbjct: 368 EDLYDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
Query: 505 PQM 507
P
Sbjct: 428 PGF 430
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 38.8 bits (91), Expect = 0.001
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 186 NLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTS----------DEEYDSSEEEEE 235
NL +EE+ ++ I K G+ + + + D DFD ++Y E+EEE
Sbjct: 20 NLKREEIEEKLEKIKKVAGLRGADLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEE 79
Query: 236 E---EDEEEEEEEEEGEEEE 252
+ +D+E+ + E+EE
Sbjct: 80 KPTWDDDEDIGDLVPDEDEE 99
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 442 DSEYEDSDFDTSDEEYDSS-----EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ + D DFD E++D ++ EEEDEEE+ +++E+ + E+EE
Sbjct: 46 EEDLADGDFD--PEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
Score = 30.7 bits (70), Expect = 0.68
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
G + S+ D +D ++D + +EE + ++ EEE+EEE+ + +E+
Sbjct: 38 GLRGADLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDDDED 88
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
D+ D S++++ EE EEEEE+EE+ E E+ SS N
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSN 45
Score = 38.5 bits (90), Expect = 0.004
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ ++ D E ++++ EE EEEEE+E + E E++ S+ K
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLK 42
Score = 37.8 bits (88), Expect = 0.007
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E+ D + E +++D EE EEEEE+EE+ E E + + S+
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNY 46
Score = 37.4 bits (87), Expect = 0.009
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ ++ + E ++++ EE EEEEE+EE E + SS +++
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSN 45
Score = 37.4 bits (87), Expect = 0.009
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
DS + + E +D++ EE EEEEE+EE+ E E + + S K
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYK 47
Score = 36.6 bits (85), Expect = 0.020
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
D+ D S++++ EE +EEEE+EE+ E E +
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 35.5 bits (82), Expect = 0.042
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
++ D + E ++++ EE EEEEE+EE+ E E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLE 34
Score = 34.7 bits (80), Expect = 0.089
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
E+ D + E ++D+ EE EEEE +EE+ E+ SS
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 34.3 bits (79), Expect = 0.11
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
++ D + E +++D EE EEEEE EE+ SS
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 33.5 bits (77), Expect = 0.17
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ SD+ D ++++ EE EEEEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 33.1 bits (76), Expect = 0.24
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
EDSD D D E D + EE EE+EE+EE+ E E + + S K
Sbjct: 2 EDSD-DIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYK 47
Score = 32.4 bits (74), Expect = 0.47
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE-------EEEEEEEEEGEEEETETA 496
+ +D SD++ EEEEE+E++ E E + + E E E+ T
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNP 62
Query: 497 SSSTAK 502
+ K
Sbjct: 63 KQVSEK 68
Score = 31.6 bits (72), Expect = 0.80
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
EDSD E D EE EEEE++EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 31.2 bits (71), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
+ +D SD++ EEEEE++E+ E E
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESS 36
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 41.9 bits (98), Expect = 0.001
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 403 GCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEE 462
G P +P D+ + ++ A + R+G+S + +D E + +
Sbjct: 321 GEPNQPDDVAEAVKAE--VAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGD 378
Query: 463 -----EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ D E EE E +E E E + DP
Sbjct: 379 LAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDP 426
Score = 41.1 bits (96), Expect = 0.002
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ GD + D E S+ EE E +E E E E+ + + + +
Sbjct: 374 EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELA 433
Query: 498 SSTAKNDPQ 506
+ +DP
Sbjct: 434 VAGPGDDPA 442
Score = 40.3 bits (94), Expect = 0.004
Identities = 18/67 (26%), Positives = 22/67 (32%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
I + GD + D E S+ EE E +E E E E AK D
Sbjct: 371 IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPD 430
Query: 265 PQMVTVP 271
V P
Sbjct: 431 ELAVAGP 437
Score = 38.0 bits (88), Expect = 0.017
Identities = 12/57 (21%), Positives = 18/57 (31%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
D + + + E EE E +E E E E A+ P + V
Sbjct: 378 DLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAV 434
Score = 35.0 bits (80), Expect = 0.14
Identities = 10/65 (15%), Positives = 21/65 (32%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
S + + E + E E + + + + E E A+ ++ +D
Sbjct: 353 ADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDET 412
Query: 507 MVTVP 511
VP
Sbjct: 413 EPEVP 417
Score = 31.9 bits (72), Expect = 1.3
Identities = 10/64 (15%), Positives = 23/64 (35%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
+G+S + +D E + + + + + E E A+ ++ +D
Sbjct: 354 DRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETE 413
Query: 268 VTVP 271
VP
Sbjct: 414 PEVP 417
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 38.4 bits (90), Expect = 0.001
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEG 488
EEE++EEEEEEEE+++ G
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDMG 84
Score = 36.1 bits (84), Expect = 0.007
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 462 EEEEEEEDEEEEEEEEEEEEE 482
E+E++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.7 bits (83), Expect = 0.009
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 464 EEEEEDEEEEEEEEEEEEEEE 484
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.7 bits (83), Expect = 0.010
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 463 EEEEEEDEEEEEEEEEEEEEE 483
+EE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.013
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEE 480
++ EEE +EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.015
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEE 481
+ EE+++EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 34.9 bits (81), Expect = 0.019
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 470 EEEEEEEEEEEEEEEEEEGEE 490
EEE++EEEEEEE ++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.5 bits (80), Expect = 0.023
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 472 EEEEEEEEEEEEEEEEGEEEE 492
EEE++EEEEE EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.4 bits (77), Expect = 0.056
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 471 EEEEEEEEEEEEEEEEEGEEE 491
EEE++EEEEEE E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.085
Identities = 11/18 (61%), Positives = 17/18 (94%)
Query: 231 EEEEEEEDEEEEEEEEEG 248
EEE++EE+EEEEE+++ G
Sbjct: 67 EEEKKEEEEEEEEDDDMG 84
Score = 33.0 bits (76), Expect = 0.089
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 458 DSSEEEEEEEEDEEEEEEEEE 478
++ EEE+++EEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.6 bits (75), Expect = 0.11
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 232 EEEEEEDEEEEEEEEEGEEEE 252
+EE++EEEEE EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.6 bits (75), Expect = 0.12
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEE 251
+ E+E++EEEEEE E++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.15
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 474 EEEEEEEEEEEEEEGEEEETE 494
EEE++EEE EEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.19
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 228 DSSEEEEEEEDEEEEEEEEEG 248
++ EEE+ EEEEEEEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 31.8 bits (73), Expect = 0.21
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEE 250
++ EE+++EEEEEEE ++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.60
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 234 EEEEDEEEEEEEEEGEEEETE 254
EEE++EEE EEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 42.3 bits (99), Expect = 0.001
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 440 NGDSEYEDS--DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE----EEEGEEEET 493
D + D D D D + ++++E +EE + E++E ++E+ EE E+ +++ +
Sbjct: 3994 KLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053
Query: 494 ETASSSTAKND 504
+ A N+
Sbjct: 4054 DLAEDDEKMNE 4064
Score = 40.8 bits (95), Expect = 0.004
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +D D ++++ +E+ EE E EE E+ + +EE E+GE E +
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 38.1 bits (88), Expect = 0.022
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEE---EEDEEEEE----EEEEEE--------EEEEEE 486
DS+ ED D + +DE + ++ E++E +ED EE E+ +++ +E+ E
Sbjct: 4005 DSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNE 4064
Query: 487 EGEEEETETASSSTAKNDPQM 507
+G EE + ST ++ +
Sbjct: 4065 DGFEENVQENEEST-EDGVKS 4084
Score = 37.3 bits (86), Expect = 0.037
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDS--DFDTSDEEYDSSEEEEEEEDEEEEE-- 243
+QE + L + + D + D D D D + ++++E +EE D E++E
Sbjct: 3973 IQENNSQPPPEN-EDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPM 4031
Query: 244 -EEEEGEEEET 253
+E+ EE T
Sbjct: 4032 QDEDPLEENNT 4042
Score = 37.3 bits (86), Expect = 0.044
Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYE------DSDFDTSDEEYDSSEE 462
+DL + + D S+++N + W+ N + E + ++ + S E+
Sbjct: 3886 QDLDEEVNDI----PEDLSNSLN-EKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKED 3940
Query: 463 EEEEEEDEEEEEEEEEEEEEEE---EEEGEEEETETASSSTAKND 504
+ + ED++ +E+E+EEE ++ ++E + + E S +N+
Sbjct: 3941 DNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Score = 36.5 bits (84), Expect = 0.069
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE---ETETA 496
D ++E D S++ + E+ D E +E +EE + E++E ++E E
Sbjct: 3992 DLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNT 4042
Score = 36.1 bits (83), Expect = 0.10
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEE-----EEEEEEEEEEEEEGEEEETETASSST 500
+ SD DE+ + EE +E+EE E +EE E+ E E++ + + + ST
Sbjct: 4051 DFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKST 4110
Score = 34.2 bits (78), Expect = 0.32
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG--EEEETETASSSTAKNDPQ 266
+ DS+ ED D + +DE + ++ E++E ++E+ EE +E+ + S A++D +
Sbjct: 4002 VSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEK 4061
Query: 267 M 267
M
Sbjct: 4062 M 4062
Score = 33.8 bits (77), Expect = 0.52
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D E + D EE EE E+ + +EE E+GE E +
Sbjct: 4058 DDEKMNED---GFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 33.4 bits (76), Expect = 0.68
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 433 NRRWNARNGDSEYEDSDFD-TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ +A N +S+ + D + E+ D E+E+EEE ++ ++E + + +E
Sbjct: 3923 SNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPP 3982
Query: 492 ETET 495
E E
Sbjct: 3983 ENED 3986
Score = 33.0 bits (75), Expect = 0.90
Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE-GEEEETE 254
KS+ + +SD + +++ + E+++ +E E+EEE ++ G ++E +
Sbjct: 3922 KSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQ 3970
Score = 32.3 bits (73), Expect = 1.2
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 184 SFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
F VQE+ + +A+++ +S GD E + E D +E + + D+ E
Sbjct: 4147 EFEQVQEDTSTPKEAMSEADRQYQSL-GDHLREWQQANRIHEWEDLTESQSQAFDDSEFM 4205
Query: 244 EEEEGEEEETETASSST 260
+E EEE+ + ++
Sbjct: 4206 HVKEDEEEDLQALGNAE 4222
Score = 31.9 bits (72), Expect = 1.7
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G + +T +E+ D E EE+ + + +E E E E + G +++ + +
Sbjct: 3819 GSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENEN 3878
Query: 501 AKNDPQ 506
+ ++ +
Sbjct: 3879 SDSEEE 3884
Score = 31.9 bits (72), Expect = 2.0
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E +D D + +D D S E+ DE EE+ E E++ E+ E++ S
Sbjct: 3882 EEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDD 3941
Query: 502 KNDPQ 506
+
Sbjct: 3942 NKALE 3946
Score = 31.5 bits (71), Expect = 2.3
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE----------------EEEEE 485
+SE + + D + DS E E + EEE ++ +EE +E E
Sbjct: 3854 ESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNE 3913
Query: 486 EEGEEEETETASSSTAKNDPQMVT 509
E+ E E ++ S A N+ +V+
Sbjct: 3914 EDLLETEQKSNEQSAANNESDLVS 3937
Score = 30.4 bits (68), Expect = 5.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
D D +++ E++E+ +E+ EE + EE TE S
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKS 4084
Score = 30.4 bits (68), Expect = 5.4
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEE-----EEEEEEEEEEEEEGEEEETE 494
ED D + E D++ + + +E + E E ++ E E EEE +
Sbjct: 3833 EDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQ 3886
Score = 29.6 bits (66), Expect = 8.2
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 14/68 (20%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE--------------EEEEEEEEEE 483
A + + + D + + + + +E E E E E + EE
Sbjct: 3824 AEDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEE 3883
Query: 484 EEEEGEEE 491
E ++ +EE
Sbjct: 3884 ENQDLDEE 3891
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEE 486
EEE+ EDEEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 35.8 bits (83), Expect = 0.003
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEE 484
EEE+ E+E+E E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEE 487
EEE+ ++EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 35.4 bits (82), Expect = 0.004
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEE 485
EEE+ E++EE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 35.0 bits (81), Expect = 0.007
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEG 488
EEE+ E+EEE E+EEE EE+ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 34.6 bits (80), Expect = 0.008
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEE 492
+EE+ E+EEE E+EEE EE E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.5 bits (77), Expect = 0.020
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETE 254
EEE+ EDEEE E+EEEGEE+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 33.5 bits (77), Expect = 0.025
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEE 491
E+E+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.1 bits (76), Expect = 0.026
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 472 EEEEEEEEEEEEEEEEGEEEETE 494
EEE+ E+EEE E+EEEGEE+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 31.5 bits (72), Expect = 0.11
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETE 494
EEE+ E+EEE E+EEE E+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 31.2 bits (71), Expect = 0.15
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
E+ E+EE+ E+EEE EE E +
Sbjct: 24 EKREDEEENEDEEEGEEQSEVK 45
Score = 30.8 bits (70), Expect = 0.20
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEE 490
EE++ E+EEE E+EEE EE+ +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 30.4 bits (69), Expect = 0.25
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETE 254
EEE+ E++EE E+EEE E+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 30.0 bits (68), Expect = 0.39
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEE 477
+EE EEE E+EE+ EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.8 bits (65), Expect = 1.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 477 EEEEEEEEEEEGEEEETETAS 497
EEE+ E+EEE +EEE E S
Sbjct: 22 EEEKREDEEENEDEEEGEEQS 42
Score = 28.8 bits (65), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEE 247
+EE EEE E+E+E EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEE 478
EE +EEE E+E+E EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.1 bits (63), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEE 479
E + E+EEE E++EE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 237 EDEEEEEEEEEGEEEETETAS 257
E+E+ E+EEE +EEE E S
Sbjct: 22 EEEKREDEEENEDEEEGEEQS 42
Score = 27.3 bits (61), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
EE +EEE E++EE EE+ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 41.3 bits (97), Expect = 0.002
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEE--EEEDEEEEEEEEEEEEEE 483
++R D D + D SD++ D E + + +D+ +E+ E+ + +
Sbjct: 236 SKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 40.9 bits (96), Expect = 0.002
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 191 EVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+V+ K AK + D D + D SD++ D E + +D +++ +E+GE+
Sbjct: 224 KVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGED 283
Query: 251 E 251
Sbjct: 284 L 284
Score = 40.1 bits (94), Expect = 0.003
Identities = 7/46 (15%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEE---EEEEEEEEEEEEEGEEE 491
D D + + +++++ED E + +++ +E+ E+ + +
Sbjct: 243 QIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 37.4 bits (87), Expect = 0.024
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ D SD+E D S+++++E+ E + ++ +++ +E+ E+ + +
Sbjct: 236 SKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.9 bits (83), Expect = 0.064
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE---EEEEEEEEEGEEE 491
++ + DS +E + ++D++E+ E + +++ +E+GE+
Sbjct: 229 PKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDL 284
Score = 35.9 bits (83), Expect = 0.077
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSD--EEYDSSEEEEEEEDEEEEEEEE 246
K S+ + + D D D + D S+++ +ED E+ + +
Sbjct: 237 KRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 30.5 bits (69), Expect = 3.2
Identities = 5/73 (6%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 426 RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE-- 483
+ + + + ++E D +++++E+ E +
Sbjct: 211 EQRIKGAEGGGAMKVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLD 270
Query: 484 --EEEEGEEEETE 494
+++ +E+ +
Sbjct: 271 DSDDDVSDEDGED 283
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 41.0 bits (96), Expect = 0.002
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE--------GE 489
G E ED D E SEEE EE+E E+ + ++ E+E+E+EE E
Sbjct: 261 EPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVE 320
Query: 490 EEETETASSSTA-KNDPQMVTV 510
EEE+E K + + V
Sbjct: 321 EEESEEPEPPPLPKKEEEKEEV 342
Score = 37.5 bits (87), Expect = 0.026
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D E+EE E E EEEE EE E +EEE E + S
Sbjct: 304 DEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVS 345
Score = 35.2 bits (81), Expect = 0.13
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D + ++ E EEE EE E ++EEE+EE +G
Sbjct: 304 DEDEDEEMEIV--PESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGR 350
Score = 35.2 bits (81), Expect = 0.13
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 446 EDSDFDTSDEEYDSSEEEE----EEEEDEEE----------EEEEEEEEEEEEEEEGEEE 491
E SD + EE + + + E+EDE+E EEEE EE E + EEE
Sbjct: 279 ERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEE 338
Query: 492 ETETASS 498
+ E S
Sbjct: 339 KEEVTVS 345
Score = 35.2 bits (81), Expect = 0.15
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 446 EDSDFDTSDEEY-DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
ED D D E +S EEEE EE E ++EEE+EE +
Sbjct: 303 EDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRR 351
Score = 34.8 bits (80), Expect = 0.19
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
DE+ D E E EEEE EE E ++EE +EE T +
Sbjct: 303 EDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDG 348
Score = 33.7 bits (77), Expect = 0.45
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 216 EDSDFDTSDEEY-DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
ED D D E +S EEEE E+ E ++ EE+E T S +
Sbjct: 303 EDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGR 350
Score = 33.7 bits (77), Expect = 0.45
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDE----------EEEEEEEEEEEEEEEEEGEEE 491
+ E D DE + + +E+E+EDE EEE EE+E+E+ + ++ E+
Sbjct: 245 EEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMED 304
Query: 492 ETE 494
E E
Sbjct: 305 EDE 307
Score = 33.3 bits (76), Expect = 0.55
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
G E ED D E SEEE EE+++E+ + ++ E+E E
Sbjct: 262 PTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307
Score = 31.7 bits (72), Expect = 1.6
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE---------EEEEEEEEEEEEEGEEEETE 494
E E+ D S E +EDE+E+E EEE EE+E+E+ ++
Sbjct: 243 ESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMM 302
Query: 495 TASSSTAKNDPQMVTVP 511
D +M VP
Sbjct: 303 EDED----EDEEMEIVP 315
Score = 31.3 bits (71), Expect = 2.2
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E EE EEE + E+E E +E+ +E+E
Sbjct: 232 KKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDE 273
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 40.7 bits (96), Expect = 0.002
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+E+ D E E +++ EEE + + EEE + T+ +T
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDAT 55
Score = 39.9 bits (94), Expect = 0.004
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ D D + + +E+ EE+ + + EEE + +
Sbjct: 8 LNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 36.9 bits (86), Expect = 0.039
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D +E+ + +E E +E+ EEE + + EEE + ++ D
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLD 53
Score = 36.5 bits (85), Expect = 0.043
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ D + + ++ E +E+ EEE + + EEE +G +
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 35.7 bits (83), Expect = 0.082
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 216 EDSDFDTSDEEYDSSEEE---EEEEDEEEEEEEEEGEEEETETASSST 260
+ D D + + +E+ EEE + + EEE + T+ +T
Sbjct: 8 LNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDAT 55
Score = 35.3 bits (82), Expect = 0.10
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ + + +E + +E+ EEE + + EE ++ A+
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 34.5 bits (80), Expect = 0.20
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
ED+DFD + E + EEE + + EEE + +
Sbjct: 1 MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 33.4 bits (77), Expect = 0.41
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
D++++++ + DE+ EEE + D EEE +G +
Sbjct: 11 DADFDENGVEVFDEK-ALVEEEPSDNDLAEEELLSQGATQ 49
Score = 32.6 bits (75), Expect = 0.65
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ E+ D +E E +E+ EEE + + +
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGAT 48
Score = 31.5 bits (72), Expect = 1.9
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+E+ D E E DE+ EEE + + E S
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 31.5 bits (72), Expect = 1.9
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+K + + + + + + + EEE +++ EEE +
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 31.5 bits (72), Expect = 1.9
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
+ D + + ++ E +E+ EEE + EE + +T
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGAT 48
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 40.4 bits (94), Expect = 0.002
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+EY + EE++ EE+EEEE EEE ++EE +G ++
Sbjct: 207 QEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 39.3 bits (91), Expect = 0.005
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ S +E +E EE++ +EE+EEEE EEE ++EE +
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 38.5 bits (89), Expect = 0.008
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E + EE+ +EE+EEEE EEE ++EEG+ +
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 33.5 bits (76), Expect = 0.35
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E +E + +E++ +EE+EEEE EEE + EE +
Sbjct: 208 EYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 33.1 bits (75), Expect = 0.44
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETE 254
EE++ +E++EEEE EEE ++EE +
Sbjct: 216 EEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 31.9 bits (72), Expect = 1.1
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ +E +E + EE++ +EE+EEEE EEE + T
Sbjct: 204 SKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGT 241
Score = 31.6 bits (71), Expect = 1.3
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+E+ + E++ +EE EEEE EEE +EE
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 30.4 bits (68), Expect = 2.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 231 EEEEEEEDEEEEEEEEEGEEE 251
E+EEEE +EE ++EE +G ++
Sbjct: 223 EQEEEEVEEEAKQEEGQGTDD 243
Score = 30.4 bits (68), Expect = 3.5
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
+EE+EEE+ EEE ++EEG+ +
Sbjct: 221 QEEQEEEEVEEEAKQEEGQGTD 242
Score = 29.6 bits (66), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+E+ + +E +E + EE++ +EE+ EEE E A
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAK 234
Score = 29.2 bits (65), Expect = 7.3
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
S + ++E+ +E +E + EE++ +EE EEEE E +
Sbjct: 187 GGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAK 234
Score = 28.9 bits (64), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ +E E + EE++ +EE+EEEE EE + E
Sbjct: 204 SKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEG 238
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 40.9 bits (96), Expect = 0.002
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++Y E ++E D EE E + +EE+ ++EE E+++ E A
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQA 420
Score = 39.0 bits (91), Expect = 0.009
Identities = 13/40 (32%), Positives = 30/40 (75%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E D+SEE E + ++E+ ++EE E++++E+ +E +E+ +
Sbjct: 390 DETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 37.9 bits (88), Expect = 0.022
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 446 EDSDFDTSDEEYDSSEEE-----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D D E ++ ++ E ++E + EE E + +EE+ ++EE E
Sbjct: 360 TDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Query: 501 AKND 504
A D
Sbjct: 420 ADED 423
Score = 37.1 bits (86), Expect = 0.032
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE--EEEEEEEEEEGEEEETET 495
EY D + + + +E + EE E + +EE+ +EE E++++E +E+ E
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEK 426
Score = 37.1 bits (86), Expect = 0.034
Identities = 11/42 (26%), Positives = 30/42 (71%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D +D ++ + +EE+ +EE E++++E+ +E++E+ +++E
Sbjct: 390 DETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 35.5 bits (82), Expect = 0.11
Identities = 13/49 (26%), Positives = 30/49 (61%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+Y + DE S E E + +E++ ++EE E++++E+ +E+ E+ +
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQ 428
Score = 32.8 bits (75), Expect = 0.74
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
EY D + + + +E + E+ E + +EE+ ++EE E A D
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Score = 32.5 bits (74), Expect = 1.0
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D S+E ++EE+ ++E+ E++++E+ +E++E+ ++ E
Sbjct: 393 DASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 31.3 bits (71), Expect = 1.9
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 448 SDFDTSDEEYDS---SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
S+ D S ++ ++ ++ ++ E ++E + EE E +EE + K
Sbjct: 358 SNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQK 417
Query: 505 PQ 506
Q
Sbjct: 418 EQ 419
Score = 31.3 bits (71), Expect = 2.2
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 198 AIAKHLGIIKS----SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
A+ K +KS S + +++ ++Y E ++E + EE E + +EE+
Sbjct: 348 ALTKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKL 407
Query: 254 ET 255
+
Sbjct: 408 KQ 409
Score = 29.4 bits (66), Expect = 8.7
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+Y + DE S E E + ++E+ ++EE E +++E + D
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 40.7 bits (95), Expect = 0.002
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+N S DF + Y+S ++E D +EEE+ ++++ E+ ++ E
Sbjct: 254 QNLSSNK-YGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
Score = 36.5 bits (84), Expect = 0.047
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
GD + + +++ D+E SS + +EEED ++++ E+ +
Sbjct: 262 GDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNH 305
Score = 34.5 bits (79), Expect = 0.17
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
D D +S +YD EEE+ +++D E+ ++ +E+ + G
Sbjct: 265 KGVNYGYESDDDEGSSSNDYD--EEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 34.5 bits (79), Expect = 0.19
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 434 RRWNARNGDSEYEDSDF---DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
R+ D + + +S++ D E D++E + +EEE+ ++ +
Sbjct: 236 RQTRGFRSDDDQGYGRYKQNLSSNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDN 295
Query: 491 EETETASSSTAKND 504
E+ + +++ D
Sbjct: 296 EDNDDTNTNHGDED 309
Score = 34.2 bits (78), Expect = 0.24
Identities = 8/47 (17%), Positives = 22/47 (46%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D D +S +YD E+ +++++E+ ++ +E+ +
Sbjct: 265 KGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
Score = 33.4 bits (76), Expect = 0.38
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 204 GIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
G K + ++Y D E D E + +EEE+ +++ E+ +T ++
Sbjct: 250 GRYKQNLSSNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTN 304
Score = 33.0 bits (75), Expect = 0.53
Identities = 8/57 (14%), Positives = 24/57 (42%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
S+ + + E +++E + +EEE+ ++++ E+ ++ T
Sbjct: 258 SNKYGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNGA 314
Score = 32.2 bits (73), Expect = 1.0
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEE-EDEEEEEEEEEGEEEETETASSSTAKND 264
N S DF + Y+S ++E D +EEE+ ++ + E+ + +++ D
Sbjct: 255 NLSSNK-YGDFKGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 38.1 bits (89), Expect = 0.002
Identities = 5/55 (9%), Positives = 28/55 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
E + D+ + +++E++E+E++ ++++++++++ + +
Sbjct: 35 EVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 33.4 bits (77), Expect = 0.082
Identities = 4/52 (7%), Positives = 29/52 (55%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ D DE+ + ++ +++D+++++++ + ++++ + ++++
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLED 100
Score = 33.4 bits (77), Expect = 0.090
Identities = 7/53 (13%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE----EEEEEEEEEGEEEE 492
+ D D DE+ ++++++++D++ + +++ ++++++ E +++E
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 31.1 bits (71), Expect = 0.50
Identities = 7/57 (12%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE---EEEEEEEGEEEETE 494
D+E + ++E D +++++++D+++ + ++++ ++++++ E+++ E
Sbjct: 48 ADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 30.4 bits (69), Expect = 0.94
Identities = 4/49 (8%), Positives = 29/49 (59%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D + ++ D +E++ +D+++++++++ + ++++ +++ +
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLED 100
Score = 29.6 bits (67), Expect = 1.9
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
E + D+ + +++EDEE+E++ ++++ +
Sbjct: 35 EVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 29.6 bits (67), Expect = 2.0
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EE + + E+ +++E+EE+E++ +++ +
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDD 77
Score = 29.2 bits (66), Expect = 2.7
Identities = 5/33 (15%), Positives = 23/33 (69%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+D E + ++E+EE++++ ++++ ++++ +
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDD 79
Score = 28.8 bits (65), Expect = 3.1
Identities = 5/32 (15%), Positives = 21/32 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+++ E+EE+E+D ++++++ ++++
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLP 81
Score = 28.4 bits (64), Expect = 5.4
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASS 258
E+ ++DE+EE+E++ +++ +
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDD 77
Score = 28.4 bits (64), Expect = 5.4
Identities = 4/41 (9%), Positives = 23/41 (56%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
D++ +E + E++ +D+++++++++ + + +
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 27.7 bits (62), Expect = 8.5
Identities = 3/51 (5%), Positives = 29/51 (56%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ + ++E D + ++++D++++++ + ++++ + + ++++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDF 97
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
+EE E E EEE EEEE E E E DP +T
Sbjct: 15 AEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLT 64
Score = 35.7 bits (83), Expect = 0.015
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 435 RWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
RW+ R ++E + +E EEE EEEEE E E+E EE
Sbjct: 5 RWSRRKLAVR--------AEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEE 54
Score = 35.7 bits (83), Expect = 0.017
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ E E E EEE EEEEE E E+ E
Sbjct: 15 AEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 35.4 bits (82), Expect = 0.026
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE E EEE EEEEE E E+ E E
Sbjct: 16 EEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 33.8 bits (78), Expect = 0.088
Identities = 13/36 (36%), Positives = 13/36 (36%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE E E EEE EE EE E E
Sbjct: 14 RAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDE 49
Score = 32.7 bits (75), Expect = 0.17
Identities = 11/36 (30%), Positives = 11/36 (30%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EE E E EEE EEEE
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELE 47
Score = 31.9 bits (73), Expect = 0.38
Identities = 11/36 (30%), Positives = 11/36 (30%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE E E EEE E EEE
Sbjct: 13 VRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELED 48
Score = 31.1 bits (71), Expect = 0.74
Identities = 11/37 (29%), Positives = 12/37 (32%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE + E EEE EEEE E
Sbjct: 11 LAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELE 47
Score = 30.3 bits (69), Expect = 1.3
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
R+ R + + + EEEEE E E+EE EE + + +
Sbjct: 9 RKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSD 68
Query: 494 ETA 496
+A
Sbjct: 69 FSA 71
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 39.7 bits (93), Expect = 0.002
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
++E+ EE+++ E ++++ EE E + + EE ++ S++A + +
Sbjct: 69 KKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNE 121
Score = 36.7 bits (85), Expect = 0.024
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D+E + EE++ E +D++ EE E + + EE + +E + + S D
Sbjct: 69 KKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNED 122
Score = 36.3 bits (84), Expect = 0.032
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+EEE++ E D+++ EE E + + EE +E S S N+ M
Sbjct: 76 LTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDM 124
Score = 33.6 bits (77), Expect = 0.26
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGE---EEETETASSSTAKNDPQMVTV 270
D+E + EE++ E D+++ EE E EE ++ S++A + +
Sbjct: 69 KKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNE 121
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 39.1 bits (91), Expect = 0.003
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 453 SDEEYDSSEEEEEEEE-------DEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
S EE +SEEE+E + E E E ++ EE ++ ++E
Sbjct: 96 SLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTA 155
Query: 506 Q 506
+
Sbjct: 156 E 156
Score = 37.2 bits (86), Expect = 0.014
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 202 HLGIIKS--SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
HL S N SE ED + Y + E E E + EE ++ ++E
Sbjct: 90 HLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEG 149
Query: 260 TAKNDPQ 266
+
Sbjct: 150 PWHRTAE 156
Score = 36.4 bits (84), Expect = 0.023
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE--TETASSSTAKN 503
E++ ++E DS +E + E E ++ EE + + E E TA+
Sbjct: 98 EENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAEL 157
Query: 504 DP 505
Sbjct: 158 SG 159
Score = 32.9 bits (75), Expect = 0.31
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 460 SEEEEEEEEDEEEEEEEEE-------EEEEEEEEEGEEEETETASSSTAKNDP 505
S+ EE + EEE+E + E E E + EE + + A+++
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEV 145
Score = 32.6 bits (74), Expect = 0.40
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EE EEE+E + +E GE E TE S + P
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPT 138
Score = 32.6 bits (74), Expect = 0.41
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEEEETETASS 498
+ E+ + D+ DE + E E E + EE ++ + E EG T S
Sbjct: 100 NQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSG 159
Query: 499 STAKNDPQ 506
+ D +
Sbjct: 160 PEQEGDSE 167
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 40.9 bits (96), Expect = 0.003
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 455 EEYDSSEEEEEEEEDEEE-----EEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE +++ EEE+E+E E + +++E E+E E+EE + + S AK +
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 39.4 bits (92), Expect = 0.007
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E E + ++EE + E + +++E E+E+E+EE +EE A + +K
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISK 59
Score = 39.4 bits (92), Expect = 0.009
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EEE+ + EEE+EEE E G + + + + D
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDED 42
Score = 37.9 bits (88), Expect = 0.024
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EEE+ + EEE+EEE E +++ A +
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEE 44
Score = 37.1 bits (86), Expect = 0.045
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ ++ + +E + + +D+E E+E+E+EE++EE + E + A+
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
Score = 35.9 bits (83), Expect = 0.100
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
EEE+ EEE+EEE E + ++ E + +++
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEE 44
Score = 35.5 bits (82), Expect = 0.14
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EE+ + +EEE+EEE E + +++E + D + P
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESP 52
Score = 35.2 bits (81), Expect = 0.18
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 446 EDSDFDTSDEEYDSSEEE----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E+ ++EE D E E + +++E E+E+E+EE++E E + S
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKRE 61
Query: 502 K 502
K
Sbjct: 62 K 62
Score = 34.8 bits (80), Expect = 0.22
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+ ++ + +E + + D++E E+E E+EE + + S AK +
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 34.8 bits (80), Expect = 0.24
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
+E+ ++ EEE+E+E E G + + + + D
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDED 42
Score = 33.2 bits (76), Expect = 0.71
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+ D + + S+ + +++E E+E+E+EE++EE E + E
Sbjct: 6 NTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 32.9 bits (75), Expect = 0.76
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE---EEEEEEEEEEEEEEEGEEEE 492
+E ED +EE ++ + D++E E+E+E+EE++EE E + E
Sbjct: 5 VNTQANEEED------EEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAE 56
Score = 32.5 bits (74), Expect = 1.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+E ED + + S+ +++E E+E+E+EE +EE A + +K
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISK 59
Score = 30.9 bits (70), Expect = 3.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
D E ++ ++ + D E E+EDE+EE++EE + E + A+
Sbjct: 14 DEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
Score = 30.2 bits (68), Expect = 5.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
EEE+ + + EEE+E E E ++ S + +D
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPA 36
Score = 29.8 bits (67), Expect = 7.1
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
N + + E+ + DS ++E E+++E+EE++EE E + E + E
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKRE 61
Score = 29.8 bits (67), Expect = 7.7
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
++ + EEE+EE+ E + ++ E + +++
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEE 44
Score = 29.4 bits (66), Expect = 9.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+N + + E+ + DS ++E EDE+E+EE++E E + S K
Sbjct: 9 ANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREK 62
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 40.3 bits (94), Expect = 0.003
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E D DE S+ E + E + E EEE EE E+E E E E+ E A
Sbjct: 190 EQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQ 244
Score = 38.7 bits (90), Expect = 0.009
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 416 QDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE 475
++T G R + H + D ++ E + E E E+E EE
Sbjct: 167 EETAGEEERTDEPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEY 226
Query: 476 EEEEEEEEEEEEGEEEET 493
E+E E E E+EE +E
Sbjct: 227 EDETELEVEDEEKALDEQ 244
Score = 35.6 bits (82), Expect = 0.084
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ + + E+EEEEE E E +EE EEE +E + P
Sbjct: 143 DAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPA 193
Score = 35.2 bits (81), Expect = 0.11
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE------EEEEEEEEEEEEEEGEEEETET 495
++ E+ D E+++ E+ E+ +D+ +E E + E E E E E E
Sbjct: 168 ETAGEEERTDEPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYE 227
Query: 496 ASSSTAKNDPQMVTVPIT 513
+ D + T
Sbjct: 228 DETELEVEDEEKALDEQT 245
Score = 33.3 bits (76), Expect = 0.46
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 215 YEDSD-FDTSDEEYDSSEEEEEEEDEEEEEEEEEGE---EEETETASSSTAKNDPQ 266
+D D + S E E E E EEE EE E E E E E + DPQ
Sbjct: 194 DDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQ 249
Score = 32.5 bits (74), Expect = 0.82
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE--------EEEEEEEEEGEEE 491
++ E+ +++ ++E + E+EE+ DE+ E+ ++E + EEEEE+GE
Sbjct: 213 EVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERP 272
Query: 492 ETETASSSTAKNDPQ 506
E T + + +
Sbjct: 273 ENATYLTKLFRKAEE 287
Score = 31.8 bits (72), Expect = 1.3
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++++ D D EEE E E +EE EEE +E E E A +DP
Sbjct: 138 QENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPADDDP 197
Query: 506 QMVTV 510
+
Sbjct: 198 DEWKI 202
Score = 31.0 bits (70), Expect = 2.5
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 443 SEYED-SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
EYED ++ + DEE E+ E+ ++++ + ++ EEEEE+ E +
Sbjct: 224 EEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGERPENATYLTKLFR 283
Query: 502 KNDPQMVT 509
K + + T
Sbjct: 284 KAEEEQFT 291
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 39.8 bits (94), Expect = 0.003
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E+EEEE EEEEEEEEEEE E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.8 bits (94), Expect = 0.004
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E EE+EEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 38.6 bits (91), Expect = 0.007
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.034
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ + EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.9 bits (84), Expect = 0.058
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + EEEEEE EEEEEEEEE E EE E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.068
Identities = 19/33 (57%), Positives = 20/33 (60%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ E EEEEEE EEEEEEEE EE E A
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.37
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
E EEEE EEE+EEEEEEE EE E E
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.2 bits (77), Expect = 0.38
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ EEEEE EE+EEEEEEEE EE E E
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.57
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
E + EEE EEE+EEEEEEE E E E
Sbjct: 230 AEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.7 bits (73), Expect = 1.1
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ EEEEE E+EEEEEEEEE EE E E
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.3 bits (72), Expect = 1.8
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGEEEETETA 256
+ EEEEEE EEEEEEEEE E EE E
Sbjct: 230 AEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.9 bits (71), Expect = 2.3
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+ + EEEEE+ EEEEEEEE EE E A
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.9 bits (71), Expect = 2.3
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E EEEEEE EEE EEEE E A + A+
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.5 bits (70), Expect = 3.4
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
++ + EE EEEEE+EEEEE EE E E
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.1 bits (69), Expect = 3.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
E E+EEEE EEEE EEEE E +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 29.7 bits (68), Expect = 4.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E +EEEEE EEE EEEE E A + A+
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 29.0 bits (66), Expect = 10.0
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
++ + EE EEEE+EEEEEE EE E E
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
FD ++E Y EE EDEEEE+ EE +E+
Sbjct: 52 FDLAEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
FD ++E Y EE ++EEEE+ E
Sbjct: 52 FDLAEERYWELREELRALEDEEEEQAGIEEVV 83
Score = 28.9 bits (65), Expect = 3.3
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE E EE E+EEEE+ EE +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGG 93
Score = 28.9 bits (65), Expect = 3.5
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE E EE E+EEEE+ E + +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGE 95
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+EE E +E E+EEEE+ EE + + +
Sbjct: 55 AEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 38.9 bits (91), Expect = 0.004
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
SD+E + E + EE E+ E+ EEEE EEEE EEE EEE +
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 38.1 bits (89), Expect = 0.008
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
++E EE E+ E+EE EEEE EEE E EEE+ E E E
Sbjct: 7 KTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEA 50
Score = 37.7 bits (88), Expect = 0.010
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
D ++ EE + +E EE E+ EEEE EEEE EE E E A+
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 37.7 bits (88), Expect = 0.010
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + + EE EE E EEEE EEEE EEE E E E++E
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIA 46
Score = 37.3 bits (87), Expect = 0.014
Identities = 21/37 (56%), Positives = 25/37 (67%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
S +E++ EE D EE EE E+ EEEE EEE EEE E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENEL 38
Score = 36.9 bits (86), Expect = 0.018
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+ D + ++E S EEE EEEE EEE E EEE++E E E EE +
Sbjct: 6 QKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 36.9 bits (86), Expect = 0.019
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E++ EE + EE EE E+ EEEE EEEE EEE
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEE 40
Score = 36.5 bits (85), Expect = 0.027
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 452 TSDEEYDSSEEEEE-EEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
T + + + +EE E+ EEE+ EEEE EEE E EEE++E E E +
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEE 54
Score = 31.5 bits (72), Expect = 1.2
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
++E++ EE + EE EE E+ EEEE EEEE E + +
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 31.1 bits (71), Expect = 1.4
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ + E+++ EE ++ EEE EEE + EEE++E E E + EE
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEE 54
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
T + + + +EE E+ E+EE EEEE E E E E
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEE 40
Score = 30.4 bits (69), Expect = 2.3
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
S+ + + E+ D + ++E S EEE EEE+ EEE E EE ++E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQE 44
Score = 29.2 bits (66), Expect = 5.8
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
SD+E + E + EE +E E+ EEEE EEEE E + +
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 29.2 bits (66), Expect = 6.5
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
SD + EE D+ E EE E+ EEEE EEEE EEE
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEE 40
Score = 29.2 bits (66), Expect = 7.0
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ EE + +E+ EEEE EEEE EEE EEE +
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 28.8 bits (65), Expect = 7.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
++E + + EE + EE E EEE +E E E + EE ++
Sbjct: 15 ETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 39.3 bits (92), Expect = 0.004
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+DE+E+++ ++ +EEE+EE EEE+ + A+ + AK
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAK 59
Score = 38.1 bits (89), Expect = 0.012
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE-------------EEEEEEEEEE 480
+W D E ED D S +E + E+EEE+ + EE+E+ + E+
Sbjct: 22 DKW-----DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREK 76
Query: 481 EEEEEEEGEEEETET 495
EE+ E EE+ E
Sbjct: 77 EEKGLRELEEDTPED 91
Score = 35.0 bits (81), Expect = 0.11
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 443 SEYEDSDFDTSDEEYDSS-------EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
++++D +F+ + E+E+++ +D +EEE+EE+EEE+ + + + +
Sbjct: 2 ADWDDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKA 61
Query: 496 A 496
Sbjct: 62 L 62
Score = 34.2 bits (79), Expect = 0.17
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
D E+E D ++E+E+++ ++ +EEE+EE+EEE+ + + +
Sbjct: 6 DEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKA 61
Score = 34.2 bits (79), Expect = 0.20
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 213 SEYEDSDFDTSDE--------EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
++++D +F+ ++D +E+++ +D +EEE+EE EEE+ + A+ + AK
Sbjct: 2 ADWDDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAK 59
Score = 29.6 bits (67), Expect = 4.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+EE+ + EE+ E+E E+ + +EE
Sbjct: 75 EKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 29.2 bits (66), Expect = 6.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+EE+ E EE+ E+E E+ +EE
Sbjct: 74 REKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 29.2 bits (66), Expect = 7.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+D DE+ D + +EEEDEE+EEE+ + + +
Sbjct: 24 WDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKA 61
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 38.7 bits (90), Expect = 0.004
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 411 LQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE 470
+QKT + + + EYE ++E E E+ E+ E
Sbjct: 27 MQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYE---EAEKEKEAGEPEREDIAEQQE 83
Query: 471 EEEEEEEEEEEEEEEEEGEEEETE 494
+EE +EEE+EEE E+ ++E
Sbjct: 84 KEEIAQEEEKEEEAEDVKQQEVFS 107
Score = 37.9 bits (88), Expect = 0.009
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ E+ S + EY+ +E+E+E E E E+ E++E+EE +EE +EEE E
Sbjct: 42 EKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAED 99
Score = 37.9 bits (88), Expect = 0.009
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT----- 509
E+ + E E E+ E++E+EE +EEE+EEE + ++ E S K +M
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEMNLEEKID 124
Query: 510 --------VPITLCLMIMVGYIYGGAVL 529
+P CL+I Y G +L
Sbjct: 125 FLAHLPHYLPPIKCLIITKEKTYRGIIL 152
Score = 37.1 bits (86), Expect = 0.013
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 414 TIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE 473
+Q T N + ++ + E + + E+ E E+ E +E+E
Sbjct: 26 NMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKE 85
Query: 474 EEEEEEEEEEEEEEGEEEETE 494
E +EEE+EEE E+ +++E
Sbjct: 86 EIAQEEEKEEEAEDVKQQEVF 106
Score = 34.8 bits (80), Expect = 0.094
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
S EE E EE E+E E E E E+ E++E+EE +EE + + K
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Score = 34.0 bits (78), Expect = 0.15
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ D + E+ + + E++ E EE E+E+E E E E+ E++ +EE +
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Score = 32.9 bits (75), Expect = 0.39
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+EEE+E DE + +EEE++ E EE E E+E E A
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIA 79
Score = 31.0 bits (70), Expect = 1.6
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 428 SAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ M + E +++ + + + + E EE E E+E E E E+ E++E+
Sbjct: 25 ANMQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEK 84
Query: 488 GEEEETE 494
E + E
Sbjct: 85 EEIAQEE 91
Score = 30.2 bits (68), Expect = 2.6
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
++E + E E E D +E++E+EE +EEE+EEE
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Query: 249 EEEETE 254
E+ + +
Sbjct: 98 EDVKQQ 103
Score = 29.8 bits (67), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ E+EEE+E +E + +EEE++ E EE +E+E
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQ 81
Score = 29.0 bits (65), Expect = 6.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
++ + E+EE ++EE+EEE E+ +++E
Sbjct: 75 REDIAEQQEKEEIAQEEEKEEEAEDVKQQEVF 106
Score = 28.6 bits (64), Expect = 8.7
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
+ + + ++E E E+ E +E+EE +E E+EE
Sbjct: 57 QKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDV 100
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 38.9 bits (90), Expect = 0.005
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEE-EEEEEEGEEEETETASSSTAKND 504
E++ EE+ +E ED+EE+E E EE+ EE+ ++ E E E S T +D
Sbjct: 143 EWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDD 192
Score = 37.7 bits (87), Expect = 0.011
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+++S + + AR E E+ EE E++EE+E E EE+ EE+ ++
Sbjct: 117 KKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDS 176
Query: 484 EEEEGEEEETETAS 497
E E E++E+ET S
Sbjct: 177 EHEIIEQDESETES 190
Score = 34.3 bits (78), Expect = 0.14
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E+ + + +E EE E+ E E EE+ +E E++E +E E E + +D +
Sbjct: 126 EQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSE 177
Score = 33.5 bits (76), Expect = 0.24
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E E EE EE E E EE+ +E E++EE+ E E +T + ++ +++
Sbjct: 129 EKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEII 181
Score = 31.2 bits (70), Expect = 1.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
D D ++E + E+ EE+ ++ E E E +E ETE+ T K
Sbjct: 152 DEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 31.2 bits (70), Expect = 1.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
DE D E+E E E++ EE+ ++ E E E S T +D
Sbjct: 152 DEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDD 192
Score = 28.9 bits (64), Expect = 8.9
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
I + + + + + + T +E+ D SE E E+DE E E +++ E+
Sbjct: 151 IDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 35.8 bits (83), Expect = 0.006
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + EEE+ EEEEE + EE +E E+ EE
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEE 59
Score = 33.9 bits (78), Expect = 0.025
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ EEE+ +EEEE + EE +E E+ + EE +
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 33.9 bits (78), Expect = 0.026
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ EEE+ E+EEE + EE +E E+ + EE
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNKSFEEL 60
Score = 32.7 bits (75), Expect = 0.081
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
++E + +EE+ EEEEE + EE +E E+ ++
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKS 56
Score = 32.3 bits (74), Expect = 0.11
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEE--EEEGEEEE 492
EEE+ EEE+E + EE +E E+ + EE E E
Sbjct: 32 EEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 29.2 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ EEEEE + EE +E E+ + EE E E
Sbjct: 34 EKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 29.2 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEE---EEEEEEEE 487
+ + EEEEE EE +E E+ EE E E
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 28.5 bits (64), Expect = 2.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETE 494
++E + EEE+ EEEEE EE E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKE 50
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEE 252
EEE+ E+EEE + EE +E E
Sbjct: 31 AEEEKREEEEEARKREERKERE 52
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+++ + EEE+ EEEEE + E +E + S
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKS 56
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 39.7 bits (93), Expect = 0.006
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
+ EE+EDE+ + EEE+E+++E++++GE K
Sbjct: 320 GKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEE 369
Score = 39.3 bits (92), Expect = 0.008
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 460 SEEEEEEEEDEEEEE---EEEEEEEEEEEEEGEEEETET 495
+E ++EE D E EE E E EEE +EEE E +
Sbjct: 382 AEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNV 420
Score = 38.1 bits (89), Expect = 0.018
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE---EEEEEEEEGEEEETET 495
E DE+ DS EEE+E++DE++++ E ++ + +EGE++E +
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENS 371
Score = 37.7 bits (88), Expect = 0.026
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 35/100 (35%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEE-----------------------------------E 464
+ + E EDSD + DE+ D +++ E
Sbjct: 324 SEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAE 383
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+++E + E EE E E EEE +EEE E S
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRR 423
Score = 36.6 bits (85), Expect = 0.055
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ E + + ++E ++ E+ + + E+ ++EEEEEE +EE +T ++
Sbjct: 446 EFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGK 505
Query: 500 TAKND 504
+AK
Sbjct: 506 SAKKQ 510
Score = 36.6 bits (85), Expect = 0.062
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE---------EEEEEEEE 486
+ + + + E+ +S EEEE E+E+E + E+ ++EEEEEE
Sbjct: 430 GEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEE 489
Query: 487 EGEEEETETASSSTAKN 503
EE +SS K+
Sbjct: 490 LDEENPWLKTTSSVGKS 506
Score = 35.8 bits (83), Expect = 0.10
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
EE D+ EE E + EEE +EEE EE ++ G + A++
Sbjct: 388 EENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKK 441
Score = 35.0 bits (81), Expect = 0.20
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E + EE+E+E+ + EEE+E+ +E++ + + +
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLR 355
Score = 34.6 bits (80), Expect = 0.23
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G E ++ + +E +E++E DEEEE E+EEE + E+ + +E A
Sbjct: 426 GPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEE 485
Query: 501 AKNDP 505
+ +
Sbjct: 486 EEEEL 490
Score = 33.5 bits (77), Expect = 0.46
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVT 269
E DE+ DS EEEDE+++E++++GE K
Sbjct: 319 EGKSVSEEDEDEDSD---SEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEE 369
Score = 32.7 bits (75), Expect = 0.92
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 194 SNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
N + K++G K + E E E + +E++E ++EEE E+EEE + E+
Sbjct: 411 ENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKV 470
Query: 254 E---TASSSTAKNDPQ 266
S A+ + +
Sbjct: 471 ANKLLKRSEKAQKEEE 486
Score = 32.3 bits (74), Expect = 1.1
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 19/79 (24%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE-------------------EEEE 476
+ S D D ++ ++EE+E+DEE E
Sbjct: 536 KKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQKDLIKEAFAGDDVVAEF 595
Query: 477 EEEEEEEEEEEGEEEETET 495
E+E++E EEE +E T
Sbjct: 596 EKEKKEVIEEEDPKEIDLT 614
Score = 32.3 bits (74), Expect = 1.2
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+E + E ++++E +EEEE E+EEE + + S A+ + +
Sbjct: 440 KKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEE 486
Score = 32.0 bits (73), Expect = 1.7
Identities = 22/103 (21%), Positives = 30/103 (29%), Gaps = 41/103 (39%)
Query: 201 KHLGIIKSSNGDSEYEDSDFDTSDEEYDSS------------------------------ 230
K G KS + + E EDSD + DE+ D
Sbjct: 317 KIEG--KSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLL 374
Query: 231 ---------EEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
++EE D E EE E E EE + +
Sbjct: 375 SMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSK 417
Score = 31.6 bits (72), Expect = 1.8
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE-------------EEEE 487
+ E E E + +E++E +E+EE E+EEE + E+ EEEE
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEE 487
Query: 488 GEEEETETASSSTAKN 503
E +E +T+
Sbjct: 488 EELDEENPWLKTTSSV 503
Score = 31.6 bits (72), Expect = 2.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
ED D D SD E + +++E++++ E ++ + +E E+ EE
Sbjct: 322 SVSEEDEDED-SDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENS 371
Score = 31.2 bits (71), Expect = 2.4
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E ++ ++ ++E E +E++E +EEEE E+E E + + A+ +++
Sbjct: 430 GEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKA 481
Score = 30.8 bits (70), Expect = 3.3
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ E ++E + E E++E +EEEE E+EEE + E+ + S +
Sbjct: 430 GEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEE 485
Score = 30.8 bits (70), Expect = 3.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ E+E E ++ ++E + E +E++E +EEE E+E E A +
Sbjct: 429 NGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLK 476
Score = 30.8 bits (70), Expect = 3.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E E EEE +EEE EE ++ + G E + A S K +
Sbjct: 399 RELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKEN 443
Score = 30.0 bits (68), Expect = 5.3
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
D E + E E EE+ +EEE EE ++ + E E + S
Sbjct: 391 DAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKE 442
Score = 29.6 bits (67), Expect = 6.9
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 194 SNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEE-----------EDEEEE 242
+A +K L + + E + + ++E ++ E+ E+EEEE
Sbjct: 430 GEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEE 489
Query: 243 EEEEEGEEEETETASSSTAKNDPQMVT 269
+EE + T + S K D + +
Sbjct: 490 LDEENPWLKTTSSVGKSAKKQDSKKKS 516
Score = 29.6 bits (67), Expect = 8.2
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 195 NVKAIAKHLGIIKSSNGDSEYED---SDF--DTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
N + K LG +K D E F + + ++ E EE E E EEE E
Sbjct: 350 NPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDE 409
Query: 250 EEETETASS 258
EE E +
Sbjct: 410 EENEEPSKK 418
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 38.7 bits (90), Expect = 0.007
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
D E E E E+E EEEEEE+ + E E G E+T S A+
Sbjct: 55 DVGGLEVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 37.1 bits (86), Expect = 0.018
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
E EE E E E+E EEEEEE + ETE + P++
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPEL 100
Score = 35.6 bits (82), Expect = 0.074
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
S E E E EDE EEEEEE + ETE + P++
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPEL 100
Score = 30.6 bits (69), Expect = 2.4
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 206 IKSSNGDSEYEDSDFDTSDE-EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
IK+ G E + +T E E + EEEEEE+ + E E G E+T S A+
Sbjct: 52 IKADVGGLEVSE---ETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 30.2 bits (68), Expect = 3.9
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE---EEEEEGEEEETETASSSTAKNDP 505
+ S+E E+E EEE+EE+ + E E E+ E +EE + + P
Sbjct: 58 GLEVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGKP 117
Query: 506 Q 506
Q
Sbjct: 118 Q 118
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 37.7 bits (88), Expect = 0.008
Identities = 9/48 (18%), Positives = 33/48 (68%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ S++++++++D+++++++++ E+++E+E ++ E T S S
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 37.4 bits (87), Expect = 0.012
Identities = 13/65 (20%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 444 EYEDSD-----FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EYE+ S ++ D ++++++++D++ E+++E+E E++ E+ + ++
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Query: 499 STAKN 503
S K
Sbjct: 137 SELKP 141
Score = 33.9 bits (78), Expect = 0.19
Identities = 4/45 (8%), Positives = 29/45 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++++ +++ ++++++++++++++ E++ E+E + T
Sbjct: 87 KKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 32.4 bits (74), Expect = 0.49
Identities = 7/51 (13%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE-EEETETASSSTAKNDP 505
++++++++D+++++ E+++E+E E++ + + S+ ++ P
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKP 141
Score = 32.4 bits (74), Expect = 0.55
Identities = 9/51 (17%), Positives = 24/51 (47%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+W + + + D++ D SE+++E+E +++ E+ + E
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134
Score = 31.2 bits (71), Expect = 1.4
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ D ++ D ++++ E++DE+E E++ E+ + E
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Score = 31.2 bits (71), Expect = 1.5
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ D D++ D +++ E++DE+E E++ E + S+ ++ P
Sbjct: 90 KSKKKKD-KDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKP 141
Score = 30.8 bits (70), Expect = 1.6
Identities = 4/61 (6%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEE---EEEGEEEETETASSSTAKNDPQMVTVPI 512
EY+ ++ + +++ ++++++++++++++ + E ++E+ +
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Query: 513 T 513
+
Sbjct: 137 S 137
Score = 30.4 bits (69), Expect = 2.6
Identities = 9/55 (16%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 214 EYEDSD------FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
EYE+ + ++ +++++++D++ E+++E+ E++ E + S ++
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 28.5 bits (64), Expect = 8.8
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
K S + + D + D SE+++E+E E++ E+ + E T S +
Sbjct: 88 KKKSKKKKDKDKDKKDDKKD--DKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPR 142
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 39.2 bits (91), Expect = 0.008
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 424 RRRSSAMN-HNRRWNARNGDSEYEDSDFDTSDEEYD--------SSEEEEEEEEDEEEEE 474
+RRS + + W+ + D E E+ + E D EEEEE E EE+
Sbjct: 93 QRRSCDVRSRSTLWSLFHDDDE-ENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEED 151
Query: 475 EEEEEEE-----EEEEEEGEEEETET 495
EE E+E +E+ EE EEEE +T
Sbjct: 152 EEYYEKEPGKVVDEKSEEEEEEELKT 177
Score = 33.5 bits (76), Expect = 0.47
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEE-----EEEEEEEEEEEEGEEEETETASSSTAK 502
D + EE E EE++E E+E +E+ EEEEEEE ++ S T K
Sbjct: 136 PDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKK 190
Score = 31.5 bits (71), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Query: 224 DEEYDSSEEEEEEEDEEE-----EEEEEEGEEEETET 255
+EE + EE+EE E+E +E+ EE EEEE +T
Sbjct: 141 EEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKT 177
Score = 29.2 bits (65), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 448 SDFDTSDEEYDSSEEEEEEEED-----EEEEEEEEEEEEEEEEE 486
+EE + E+EE E++ +E+ EEEEEEE + ++
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 38.1 bits (89), Expect = 0.008
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYI 523
EEE+ E G E E E + M L L++ V I
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMG----PLLLVLAVALI 170
Query: 524 YGGAVLFSK 532
GGA + K
Sbjct: 171 GGGAYYYFK 179
Score = 32.7 bits (75), Expect = 0.53
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ + S E E E E E EEE E
Sbjct: 117 EDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPE 153
Score = 31.9 bits (73), Expect = 1.0
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E+ +++ +E + +E+EEE++E
Sbjct: 187 EKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 31.5 bits (72), Expect = 1.1
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ D + + E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 31.5 bits (72), Expect = 1.2
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
E+ D E E E E E EEE E++ G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSG 157
Score = 30.4 bits (69), Expect = 2.5
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E+ ++D +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPP 212
Score = 30.4 bits (69), Expect = 2.6
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+E+ +++ +E + +E+EEE++
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 30.4 bits (69), Expect = 3.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+E+ D++ +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 30.0 bits (68), Expect = 3.6
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ E E E E + E E EEEG
Sbjct: 21 FAYGGEPEPEVPQTEATDPSEVVVETVTEEEGG 53
Score = 29.6 bits (67), Expect = 4.6
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
+E + +++ +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 29.6 bits (67), Expect = 5.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+E + +++ +E D +E+EEE+ E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 29.2 bits (66), Expect = 5.9
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYI 283
+EE ++ E G E E E + M L L++ V I
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMG----PLLLVLAVALI 170
Query: 284 YGGAVLFSK 292
GGA + K
Sbjct: 171 GGGAYYYFK 179
Score = 29.2 bits (66), Expect = 6.1
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E+ +++ +E + +E+EEE+ E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 29.2 bits (66), Expect = 7.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEE 483
+ +++ +E D +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 29.2 bits (66), Expect = 7.4
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
D++ D E + +EDEEE++E
Sbjct: 189 GAPDDDLD---EYDYGDEDEEEDDEPPW 213
Score = 28.8 bits (65), Expect = 8.0
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEE 245
D++ D + +E+E+E++E
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPPW 213
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription factor
TFIIE alpha. TFIIE is compiled of two subunits, alpha
and beta. This family of proteins are the C terminal
domain of the alpha subunit of the protein which is the
largest subunit and contains several functional domains
which are important for basal transcription and cell
growth. The C terminal end of the protein binds directly
to the amino-terminal PH domain of p62/Tfb1 (of IIH)
which is involved in the recruitment of the general
transcription factor IIH to the transcription
preinitiation complex. P53 competes for the same binding
site as TFIIE alpha which shows their structural
similarity. Like p53, TFIIE alpha 336-439 can activate
transcription in vivo.
Length = 86
Score = 35.6 bits (82), Expect = 0.011
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
S+ DTS+ + DS E + +EEE++E++E EE E+E
Sbjct: 1 SESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 34.4 bits (79), Expect = 0.025
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+SD SD++ S E + DEEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 33.6 bits (77), Expect = 0.049
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
+S+ +SD D+ E + + +EEED+E++E EE +E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 33.6 bits (77), Expect = 0.049
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
+S+ +SD D+ E + + +EEE+DE++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 30.6 bits (69), Expect = 0.58
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 217 DSDFDTSDEEYDSSE----EEEEEEDEEEEEEEEEGEEEET 253
+SD SD++ S E + +EE+++E++E EE E+E T
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDEPT 42
Score = 30.2 bits (68), Expect = 0.84
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E D+SE +++ E + +EEE++E++E EE E E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 30.2 bits (68), Expect = 0.93
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 218 SDFDTSDEEYDSSEEE---EEEEDEEEEEEEEEGEEEETE 254
S+ DTS+ + DS E + DEEE++E++E EE E E
Sbjct: 1 SESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.9 bits (62), Expect = 4.8
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ E +++ E + +EEE++E++ EE +
Sbjct: 4 DTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.5 bits (61), Expect = 6.8
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 458 DSSEEEEEEEEDEEE---EEEEEEEEEEEEEEEGEEEETET 495
+S E +++ E + +EEE++E++E E E+ T
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDEPT 42
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 36.4 bits (84), Expect = 0.011
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE---EEEEEEEEEEEEEEEGEE 490
S Y+ D D + + +++ E ++EE E+E E EEEEE +
Sbjct: 54 GKGRKRSYYDRYDEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 34.1 bits (78), Expect = 0.060
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEE----EEEEEEEEEEEGEEEETETA 496
S +D DE+ E E ++EE E+E E E EEE+ +
Sbjct: 59 RSYYDRYDEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKK 112
Score = 32.2 bits (73), Expect = 0.33
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDE--EYDSSEEEEE------EEDEE 240
Q+E+ + I G + + Y++ D + E + +EE EDE
Sbjct: 39 QDEIPYDSDEIWAIFGKGRKRSYYDRYDEDDALDNMEATFMEIQKEERRSARMARLEDER 98
Query: 241 EEEEEEEGEEEE 252
E EEE E+ +
Sbjct: 99 ELAREEEEEKRK 110
Score = 29.9 bits (67), Expect = 2.0
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 21/105 (20%)
Query: 411 LQKTIQDTTGAYNRRRSSAMNHNRRWNAR-NGDSEYEDSDFDTSDE------------EY 457
T++ T + RS H+ + D E +D SDE Y
Sbjct: 3 SGPTLKPQTSSNKASRSYDDEHDEDMDDFIEDDDEEQDEIPYDSDEIWAIFGKGRKRSYY 62
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEE--------EEEEEEGEEEETE 494
D +E++ + E E ++EE E+E E EEE E
Sbjct: 63 DRYDEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEE 107
Score = 27.9 bits (62), Expect = 7.5
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEE-----EEEEEEEGEEEETETASSSTAKN 263
S Y+ D D + + +++ E ++E+ E+E E EE E KN
Sbjct: 59 RSYYDRYDEDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKN 115
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 38.6 bits (90), Expect = 0.012
Identities = 19/86 (22%), Positives = 34/86 (39%)
Query: 406 TRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEE 465
R R +K Q TGA SA++ RR + +E +++ + S DS +
Sbjct: 76 RRRRQRRKEPQAGTGALGPISQSAISPQRRSSTGENSAESDNTSYGLSKLAEDSENIDVR 135
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ +E EE + +E+
Sbjct: 136 PVYESDERSGISEEGSRPSKLREQEQ 161
Score = 37.9 bits (88), Expect = 0.019
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 405 PTRPRDLQKTIQDTTGAYNRR-----RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDS 459
P R T + + + ++ + R S DS
Sbjct: 329 PARDEVDTNDSSPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDS 388
Query: 460 SEEEEEEEEDEEEEEEEEEEE 480
+E+ E ++ + ++EEE E
Sbjct: 389 EDEDTERDDSDSDDEEETPAE 409
Score = 35.6 bits (82), Expect = 0.096
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 16/72 (22%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEE----------------DEEEEEEEEEEEEE 482
N S DS + E+ + E + E+E+ E
Sbjct: 336 TNDSSPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTER 395
Query: 483 EEEEEGEEEETE 494
++ + +EEET
Sbjct: 396 DDSDSDDEEETP 407
Score = 33.6 bits (77), Expect = 0.45
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S ++ + +S + E+++ E ++ + +EEET
Sbjct: 361 GSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETP 407
Score = 30.9 bits (70), Expect = 2.4
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 405 PTRPRDLQKTIQDTTGAYN-RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEE 463
L+ + + R + S + D DT ++ DS +EE
Sbjct: 345 SKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEE 404
Query: 464 EEEEED 469
E E
Sbjct: 405 ETPAER 410
Score = 30.5 bits (69), Expect = 4.1
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
+ + S S + + + E ++ D ++EEE
Sbjct: 367 RRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETP 407
Score = 30.2 bits (68), Expect = 4.6
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
S DS E+E+ E D+ + ++EEE E
Sbjct: 372 EPSSSSPPSRPRSRRDS-EDEDTERDDSDSDDEEETPAE 409
Score = 30.2 bits (68), Expect = 4.7
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
++ + + S S + ++E+ E ++ ++E ET
Sbjct: 363 EASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETP 407
Score = 29.8 bits (67), Expect = 7.1
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 187 LVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEE 241
L + S K+ SS D + D E D S+ ++EEE E
Sbjct: 355 LAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPAE 409
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 38.6 bits (90), Expect = 0.012
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 446 EDSDFDTSDE-EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E SD + DE E D + + E + +EE+EEE++E EEE
Sbjct: 421 EISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEE 468
Score = 35.5 bits (82), Expect = 0.13
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+++ E + + EE D EE+E+ + D E + +EE+EEE++E
Sbjct: 413 ENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPST 463
Score = 34.3 bits (79), Expect = 0.26
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + + +E+EE+E+ + + E + +EE+EEE +E T
Sbjct: 414 NKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPST 463
Score = 34.3 bits (79), Expect = 0.28
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + E+ D + ++E+EE+ED + + E + +EE+EE ++E +
Sbjct: 409 EEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPST 463
Score = 33.6 bits (77), Expect = 0.53
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
S+ E+ D D DE+ D E + DEE+EEE++E EE
Sbjct: 420 EEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEE 467
Score = 32.4 bits (74), Expect = 0.94
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E + E S EE++E+E++E+ + + E + +EE EEE+ E S+ +
Sbjct: 408 LEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEE 467
Query: 504 DP 505
+P
Sbjct: 468 EP 469
Score = 32.4 bits (74), Expect = 1.1
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
R LQK + ++ +A D + ED D D E +EE+EEE
Sbjct: 401 RSLQKEPLEEKPENKDESVEEIS-----DAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEE 455
Query: 469 DEEEEEEEEEEEEE 482
D+E EEE
Sbjct: 456 DKEAIPSTILEEEP 469
Score = 30.9 bits (70), Expect = 2.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EE+ E +DE EE + EE++E+EE+ + + S+ + +
Sbjct: 408 LEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKE 453
Score = 30.9 bits (70), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
D + ED D D E +EE+EE+++E EEE T
Sbjct: 427 EDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPT 470
Score = 30.9 bits (70), Expect = 3.5
Identities = 13/57 (22%), Positives = 33/57 (57%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ E ++ ++ +E D+ E++E+EE+++ + + E + +EE+E E++E
Sbjct: 405 KEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIP 461
Score = 30.5 bits (69), Expect = 3.8
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
E EE+ E+++E EE + EE++E+E +E+ S ND +
Sbjct: 406 EPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEE 454
Score = 30.5 bits (69), Expect = 4.0
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+ +S E SD + DE+ + E+ + + + + +EE EEE+ E S+ + +P
Sbjct: 412 PENKDESVEEISDAEEDDED-EEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
Score = 29.3 bits (66), Expect = 9.0
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + E S ++E EE+ E ++E EE + EE++E EE+E
Sbjct: 393 IDETSEFVRSLQKEPLEEKPENKDESVEEISDAEEDDEDEEDEDG 437
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 35.1 bits (81), Expect = 0.013
Identities = 7/32 (21%), Positives = 29/32 (90%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E EE E++D++E+++++++++++++++ +++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 34.8 bits (80), Expect = 0.015
Identities = 7/33 (21%), Positives = 30/33 (90%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE E+++D+E++++++++++++++++ ++E+ E
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 33.6 bits (77), Expect = 0.053
Identities = 4/32 (12%), Positives = 30/32 (93%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E++++++++++++++++++++++++ E++E
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 32.5 bits (74), Expect = 0.10
Identities = 6/32 (18%), Positives = 30/32 (93%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE E++++DE+++++++++++++++++ +E++
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDD 79
Score = 32.5 bits (74), Expect = 0.12
Identities = 7/32 (21%), Positives = 28/32 (87%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE ED++++E+++++++++++++ ++++ E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDE 77
Score = 31.7 bits (72), Expect = 0.20
Identities = 6/33 (18%), Positives = 30/33 (90%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
EE + +++E++++D++++++++++++++E++E
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 31.7 bits (72), Expect = 0.22
Identities = 6/33 (18%), Positives = 29/33 (87%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+E D ++E+++++D+++++++++++++E++E
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 30.9 bits (70), Expect = 0.44
Identities = 6/35 (17%), Positives = 31/35 (88%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E + E+++++E+D+++++++++++++++++E +E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 30.9 bits (70), Expect = 0.44
Identities = 6/33 (18%), Positives = 29/33 (87%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE E+D+++E++++++++++++++ ++++ +
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDED 78
Score = 28.6 bits (64), Expect = 2.6
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 146 DFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGI 205
D + A KS D+ A++ F + A + L++EE + IA+ + I
Sbjct: 3 DLIEAIKSGDLVEAKK-------------EFASIMEARTEALIEEEKV----EIARSVMI 45
Query: 206 IKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE 244
G+ +D D + D++ D +++++++D++E++E
Sbjct: 46 ----EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 28.6 bits (64), Expect = 3.2
Identities = 11/42 (26%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE 479
AR+ E E+ + D D+E D ++++++++D++++++E++E
Sbjct: 40 ARSVMIEGEEPE-DDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 27.8 bits (62), Expect = 4.8
Identities = 4/33 (12%), Positives = 28/33 (84%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+ +++ D ++++++++D++++++++++E++E
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 38.5 bits (90), Expect = 0.013
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E++ EEEEEE EE EEE EE+ + + + EE
Sbjct: 144 EFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEE 180
Score = 36.2 bits (84), Expect = 0.053
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+EE + E EEE EED + + + EE +E+E
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQE 185
Score = 35.8 bits (83), Expect = 0.073
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + EEE EE E+E EE+ + + + EE +E+E
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQE 185
Score = 35.0 bits (81), Expect = 0.15
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ EE EE EE+ EE+ + + + EE E+EE
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 34.6 bits (80), Expect = 0.16
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EEEEEE +E EEE EE+ + + + EE E
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDARKRAAEEAKE 183
Score = 33.5 bits (77), Expect = 0.44
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 10/44 (22%)
Query: 462 EEEEEEEDEEEEEEEEEEE----------EEEEEEEGEEEETET 495
E EEEE+E EE EEE EE EE +E EE +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRS 191
Score = 33.1 bits (76), Expect = 0.59
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
EEEE EE +EE EE+ + + + E +E+ E S
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQV 193
Score = 32.3 bits (74), Expect = 0.93
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E EEE+EE EE EEE EE+ + + + E
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAAE 179
Score = 32.3 bits (74), Expect = 0.99
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 444 EYE----DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
E+E + + + +E + EE+ + + + EE +E+EE
Sbjct: 144 EFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 31.6 bits (72), Expect = 1.6
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 214 EYE----DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
E+E + + + +E + EE+ + D + EE E+EE
Sbjct: 144 EFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 31.2 bits (71), Expect = 2.2
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E E E EEEEEE EE EEE EE+ +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAAD 170
Score = 30.0 bits (68), Expect = 5.0
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ + E E + EEEEEE EE EEE EE +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAAD 170
Score = 29.3 bits (66), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETE 254
E EEE+EE EE EEE EE+ +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAAD 170
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 37.0 bits (86), Expect = 0.013
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EE E+E+ E +E EE+E + ++E+ E++E + A K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKK 134
Score = 34.4 bits (79), Expect = 0.081
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
E E++E +E EE+E + ++E++E++E+ E+ S+ + T
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKT 150
Score = 32.0 bits (73), Expect = 0.63
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E+E++E +E EE+E + ++E++E +E++
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.66
Identities = 15/59 (25%), Positives = 38/59 (64%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
++ E+ + S+E EE+E + ++E++E++E++ E+ +++ T+T ++T K + T
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Score = 30.9 bits (70), Expect = 1.3
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
EE E+E +E +E EE E + + +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKE 123
Score = 29.0 bits (65), Expect = 5.8
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+S +E++E E EE+E + ++E+ E A+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAE 128
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 38.5 bits (89), Expect = 0.013
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE------- 485
N + + N D E E + +EE +++EEEE+ED EE EE EE E EEE
Sbjct: 79 NDKSDNEN-DVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDS 137
Query: 486 EEGEEEETETASSS 499
E+ +E+E++
Sbjct: 138 EKDDEKESDAEGDE 151
Score = 32.0 bits (72), Expect = 1.2
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + ++ D++ D E + + EEE ++EEEE+E+ EE EE EE E E E
Sbjct: 73 NVASIANDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYD 132
Query: 497 SSSTAKNDPQ 506
++ D +
Sbjct: 133 DDEDSEKDDE 142
Score = 30.8 bits (69), Expect = 2.7
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
++EE + +EEEE+ED EE EE EE E E E ++ D +
Sbjct: 99 NEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDE 142
Score = 29.3 bits (65), Expect = 8.2
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E ED + EE + EEE +++ED E+++E+E + E +E E E E A
Sbjct: 109 EEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVDDDVA 168
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 38.9 bits (90), Expect = 0.013
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ D++ E S +E D + E+D + E EE+E EEE EEEE + S+
Sbjct: 733 DEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAK 792
Query: 500 TAK 502
AK
Sbjct: 793 RAK 795
Score = 35.4 bits (81), Expect = 0.15
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E D F + D E D+S+ E +E+E EEE+ EEEE + S+ AK
Sbjct: 746 QEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEK-EEEENKEVSAKRAK 795
Score = 35.0 bits (80), Expect = 0.17
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D + D SD +SSEE+E EE++EEEE +E + ++++
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQ 798
Score = 34.6 bits (79), Expect = 0.21
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E + DE + S + E++ + E EE+E EEE+EEE +E + + +
Sbjct: 743 ESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQR 799
Score = 33.9 bits (77), Expect = 0.45
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
FD + DS E EE++ EEE+EEE +E + + +
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQR 799
Score = 32.7 bits (74), Expect = 0.81
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E D F + D E D+S+ E EE+E EEE+EEEE +E + + +
Sbjct: 746 QEEGLDEIFYSFDGEQDNSDSFAES--SEEDESSEEEKEEEENKEVSAKRAKKKQRKNML 803
Query: 502 KNDP 505
K+ P
Sbjct: 804 KSLP 807
Score = 31.2 bits (70), Expect = 2.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 216 EDSDFDTSDEEYDSSEEEE-EEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
D + D SD +SSEE+E EE++EEEE +E + + + K+ P
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKSLP 807
Score = 29.6 bits (66), Expect = 8.2
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEE---EEEEEEEGEEEET 253
A+ K ++ + DSE + ++ D SD D + + +DE+ E +E + EE
Sbjct: 692 SALVKSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLD 751
Query: 254 ETASSSTAKND 264
E S + D
Sbjct: 752 EIFYSFDGEQD 762
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 37.3 bits (87), Expect = 0.014
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 451 DTSDEE----YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D + E YD + +++ + E+E+ E+++E EE E + G +
Sbjct: 127 DPTGEFAIVLYDPTVDDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 30.8 bits (70), Expect = 1.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETET 495
D++ + EEE+ E+++E EE E + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNG 168
Score = 30.8 bits (70), Expect = 2.1
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 221 DTSDEE----YDSSEEEEEEEDEEEEEEEEEGEEEETET 255
D + E YD + +++ + +EE+ E+++E EE ET+
Sbjct: 127 DPTGEFAIVLYDPTVDDKPKIEEEKAEKDQEPEESETKL 165
Score = 29.6 bits (67), Expect = 4.6
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEET 493
+D+ + EEE+ E+++E EE +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 29.6 bits (67), Expect = 4.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
++ + EEE+ E+++E EE E + S A
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHKSLA 176
Score = 29.2 bits (66), Expect = 5.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 38.3 bits (89), Expect = 0.016
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++E + E EEE+E+E+ +EE+++++E +EE + +
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 37.9 bits (88), Expect = 0.022
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EEE+E+E+ +EE+++++E+ +EE ++ +EE + K
Sbjct: 105 EEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
Score = 35.6 bits (82), Expect = 0.11
Identities = 15/62 (24%), Positives = 35/62 (56%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G S+ + + E + S +EEE+E+++ +EE+++++E+ +EE + + + E
Sbjct: 83 GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Query: 501 AK 502
K
Sbjct: 143 PK 144
Score = 34.5 bits (79), Expect = 0.20
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E +E+ E+E+E+E++ EE + EE ++ E A S K
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK 177
Score = 34.5 bits (79), Expect = 0.20
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE +E+ +EE + + +EE +E+ +E+E E+E+ +
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 33.3 bits (76), Expect = 0.51
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEE--EEEEEEEGEEEETETASSSTAKNDPQ 506
EE + + +EE+++ +E+ +EE ++ +EE +E+ +E E +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 32.9 bits (75), Expect = 0.66
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ + ++ D +E + +E+E E+E++ EE + EEE++
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK 177
Query: 499 STAKNDPQMVTVPIT 513
K P P
Sbjct: 178 PPKKKPPNKKKEPPE 192
Score = 32.6 bits (74), Expect = 0.85
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ E +E+E+E+E+ +EE+++++E+ EE + + P
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 32.2 bits (73), Expect = 1.3
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 22/99 (22%)
Query: 157 QTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYE 216
Q E T EL L L A +S + VK + K G S+
Sbjct: 51 QEPERTNEL------LQALAKCAESKLSSD-------EAVKRVEK---------GGSKGP 88
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+ + E + S +EEE+E E+ +EE+++ +E+ E
Sbjct: 89 AAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 31.8 bits (72), Expect = 1.5
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+G E ++ + +++ + +EE ++ + +EE +E+ +E+E+E E++ E
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 31.8 bits (72), Expect = 1.7
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 13/114 (11%)
Query: 402 RGCPTRPRDLQKTIQDTTG-AYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSS 460
R P R + + + S+ + ++ + +D +F
Sbjct: 293 RPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKK------SEDEDDENFVVEAAAQAPD 346
Query: 461 EEEEEEEEDEEEEEEEE------EEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E+E E+ E++ E ++E E G ET +SS AK +
Sbjct: 347 IVAGGEDEAEDGEQQGGLVQKILETKKEYETGSGSASPGETEASSAAKKERDSS 400
Score = 31.8 bits (72), Expect = 1.8
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ + +++ + +E E +EEE+E+E+ +EE+ +++E K +
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136
Score = 31.4 bits (71), Expect = 2.1
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+E ++E+ +EE ++ + +EE +E+ +E+ +E+E + + + +
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 31.0 bits (70), Expect = 2.4
Identities = 11/43 (25%), Positives = 28/43 (65%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
++E E+++++E+ +EE ++ + +EE +E+ +E+E E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 30.2 bits (68), Expect = 5.3
Identities = 14/73 (19%), Positives = 33/73 (45%)
Query: 432 HNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+R R + +++ + EEE++ + E + + EE + EE E EE+
Sbjct: 163 EKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEED 222
Query: 492 ETETASSSTAKND 504
+ + ++T+ +
Sbjct: 223 DGKDRETTTSPME 235
Score = 29.9 bits (67), Expect = 5.8
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 17/96 (17%)
Query: 190 EEVISNVKAIAK-HLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE----- 243
V+ + + + K +I + +D +F E++ E+ E
Sbjct: 305 VTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGGL 364
Query: 244 -----------EEEEGEEEETETASSSTAKNDPQMV 268
E G ET +SS AK +
Sbjct: 365 VQKILETKKEYETGSGSASPGETEASSAAKKERDSS 400
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 36.1 bits (84), Expect = 0.016
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + DEE++ +EEE + + EE + E E +
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 35.3 bits (82), Expect = 0.025
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+EE++ DEEE + + EE +E E E+
Sbjct: 98 ARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 35.0 bits (81), Expect = 0.039
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E E + +EE++ +EEE + + EE +E E E
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 33.0 bits (76), Expect = 0.18
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
DE ++ +EE++ +EEE + + EE +E E E ++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 32.6 bits (75), Expect = 0.22
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E E + +EE++ +EEE + + EE E E +
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 32.6 bits (75), Expect = 0.23
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ +EE + +EEE + + EE +E E E+++
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.7 bits (70), Expect = 1.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E D E + ++E++ +EEE + + EE +E E E+
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 29.6 bits (67), Expect = 2.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETET 255
+EE++ ++EE + + EE +E E E
Sbjct: 100 DEEKKLDEEEAKRQHEEAKEREREK 124
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 38.7 bits (90), Expect = 0.017
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
++EE++EE EE + EE +EE EEEE+G
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 38.3 bits (89), Expect = 0.020
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E +EE++EE+ EE + EE +EE EEEE+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 37.5 bits (87), Expect = 0.030
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E +D +E +E++E+++EE+ EE + EE +EE EEE+
Sbjct: 271 EGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 37.1 bits (86), Expect = 0.050
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E++EE+DEE+ EE + EE +EE EE E+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 35.6 bits (82), Expect = 0.12
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E++EE++E++ EE + EE +EE EEEE
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 35.6 bits (82), Expect = 0.14
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ EE++EE+ +E + EE +EE EEEE+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 34.8 bits (80), Expect = 0.21
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ EE D + EE + E+ +EE EEEE+ E E
Sbjct: 278 ELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYE 316
Score = 34.1 bits (78), Expect = 0.38
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E++EE+++E+ EE + EE +EE EEE +
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 33.7 bits (77), Expect = 0.44
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+++E++EE+ EE + EE +EE EEEE
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKG 309
Score = 32.5 bits (74), Expect = 1.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+ + +EE+ EE EE +EE EEEE+ E E+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 31.4 bits (71), Expect = 2.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+++ + SEE + EE DEE EEEE+ E E+
Sbjct: 285 EKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 31.0 bits (70), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+E +EE++EE EE + EE EE E E
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEE 306
Score = 30.6 bits (69), Expect = 4.1
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 175 LFGIALLAMSFNLVQEEVISNVKAIAKH---LGIIKSSNGDSEYEDSDFDTSDEEYDSSE 231
L G ALL + E V+ I +H LGI E D+ +E +
Sbjct: 242 LRGGALLVLV-----EGVLLKAPKILRHVDKLGI----------EGWDWLKELKEKKEEK 286
Query: 232 EEEEEEDEEEEEEEEEGEEEETE 254
+EE+ E+ + EE +EE EEEE
Sbjct: 287 DEEKSEEVKTEEVDEEFEEEEKG 309
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.5 bits (90), Expect = 0.017
Identities = 24/90 (26%), Positives = 41/90 (45%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
+ LQ+ +++ R + E + + + +EE + EE+ +E E
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E EE E+E EE +EE EE E E+ E
Sbjct: 849 EELEELEKELEELKEELEELEAEKEELEDE 878
Score = 37.4 bits (87), Expect = 0.033
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E + +T EE + E EE ++E EE+ EE EE E EE + A+
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Score = 35.1 bits (81), Expect = 0.17
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE ++ EE E+ E EE +EE EE+ E EE E
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Score = 35.1 bits (81), Expect = 0.17
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGD---SEYEDSDFDTSDEEYDSSEEEEE 465
+L++ +++ + E E + + EE EE E
Sbjct: 705 EELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE + EE + +EE EE EE + E
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEE 794
Score = 33.1 bits (76), Expect = 0.67
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E + + E + ++EE EE+ EE EE E EE E E
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Score = 33.1 bits (76), Expect = 0.67
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
EE ++ EE EE +E +E+ E +EE EE E EE + + +
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362
Score = 32.4 bits (74), Expect = 1.1
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ ++E + +EE EE E E+EE E+E +E EEE+EE EEE E S
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESE 899
Score = 31.6 bits (72), Expect = 2.1
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE + E EE E E EE +EE EE+ EE E + +
Sbjct: 336 KEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELA 386
Score = 31.6 bits (72), Expect = 2.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ +E E EE ++ E EE +EE EE+ EE E + +
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384
Score = 31.2 bits (71), Expect = 2.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+ + + + E E +E+ E +EE EE E EE E+ E EE
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Score = 30.8 bits (70), Expect = 3.6
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 189 QEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
EE+ + ++ + + L +K + E + +T EE + E EE EE EE+
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSAL 370
Query: 249 EEEETETASSSTAKND 264
EE E + +
Sbjct: 371 LEELEELFEALREELA 386
Score = 30.5 bits (69), Expect = 4.6
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EE EE E EE E E E E E EE + E S
Sbjct: 372 EELEELFEALREELAELEAELAEIRNELEELKREIESLEERLE 414
Score = 30.1 bits (68), Expect = 6.5
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 413 KTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE 472
+ ++D + R + + + E EE ++ E E E E E
Sbjct: 873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELE 932
Query: 473 EEEEEEEEEEEEEE 486
EE EEE E+ E E
Sbjct: 933 EELEEEYEDTLETE 946
Score = 29.7 bits (67), Expect = 7.3
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ E + E E EE E EE E+ E EE +EE E
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364
Score = 29.7 bits (67), Expect = 7.4
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EE E +EE +E E EE E+ E EE +EE E S
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368
>gnl|CDD|221562 pfam12406, DUF3664, Surface protein. This family of proteins is
found in eukaryotes. Proteins in this family are
typically between 131 and 312 amino acids in length.
Length = 100
Score = 35.4 bits (81), Expect = 0.017
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 449 DFDTSDEE--YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
DFD +D++ D ++ ++ E+ +E ++E E ++ + E E EE E P+
Sbjct: 8 DFDPNDDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELE----------PE 57
Query: 507 MVTVPI 512
VTV +
Sbjct: 58 TVTVEV 63
Score = 30.0 bits (67), Expect = 1.4
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 219 DFDTSDEE--YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
DFD +D++ D ++ ++ E +E ++E E ++ + + +P+ VTV +
Sbjct: 8 DFDPNDDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEV 63
Score = 29.3 bits (65), Expect = 2.1
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE------EEEEEEEEEEEGEEEETETASSS 499
E S T E + + + E E EE E E E EE +E + EE S
Sbjct: 28 EQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDS 87
Query: 500 TAKNDPQMVTVP 511
+ Q V P
Sbjct: 88 KQEPTQQPVDEP 99
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 35.3 bits (82), Expect = 0.018
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEE-----EEEEEEEEEEEEEG 488
D DEE + E + + E E+ + EEEEEE++ EEG
Sbjct: 65 DVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEEG 109
Score = 34.6 bits (80), Expect = 0.043
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEE--------EEEEEEEEEGEEE 491
++ +EE+EEE + + + E+E+ EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 34.2 bits (79), Expect = 0.051
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D + +EE+EE+ E + + E+E+ + E EEEE E
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEE 101
Score = 29.6 bits (67), Expect = 2.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEE--------EEEEEEGEEEETE 254
D DEE + E + + ++E+ EEEEEE + E
Sbjct: 65 DVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 28.4 bits (64), Expect = 4.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
Y ++ + ++E+EEE E + + E+E+ + E TE
Sbjct: 59 YKVPLDDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTE 96
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 38.1 bits (88), Expect = 0.019
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+G+++ +D + E SS + E EE + E E E + + ++E + +
Sbjct: 141 SGNND-HATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIV 199
Query: 500 TAKNDPQMVTVPITL 514
+ K D ++
Sbjct: 200 SLKKDEADAESVLSS 214
Score = 35.1 bits (80), Expect = 0.18
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + D + + S++ E EE + E E E + + ++E + +
Sbjct: 139 NESGNNDHATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYI 198
Query: 497 SS 498
S
Sbjct: 199 VS 200
Score = 33.9 bits (77), Expect = 0.35
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
SS+ DSE E+SD ++ E DS ++E + + + ++ E + S +D
Sbjct: 159 SSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSSD 215
Score = 33.1 bits (75), Expect = 0.73
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
K+ +G+++ +D + E SS + E E+ + E E E + + + S S N
Sbjct: 138 KNESGNND-HATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRN 196
Query: 267 MVT 269
+
Sbjct: 197 YIV 199
Score = 31.2 bits (70), Expect = 2.9
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E + S + S+ E SE E E + + ++E + + + ++ E + S +
Sbjct: 155 ESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSS 214
Query: 504 D 504
D
Sbjct: 215 D 215
Score = 30.1 bits (67), Expect = 5.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 456 EYDSSEEEEEEEE-------DEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+DS E E+ +E+ E++EE + +E +EE+E+ + + AS S N
Sbjct: 30 GFDSEELEDNDEQGYSFGVNSEDDEEIDSDEAFDEEDEKRFADWSFNASKSGKSNK 85
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 38.2 bits (89), Expect = 0.019
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N DS+ D D D D+E + S + EE EE ++ + E ++ + + +
Sbjct: 479 NDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSGS 538
Query: 497 SSSTAKNDPQMVTVPI 512
S + +D P+
Sbjct: 539 SGAEDDDDDIEGVEPV 554
Score = 37.4 bits (87), Expect = 0.030
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE--EEEEGEEEETETAS 497
+ D + D D D+E D +E+ + EE EE ++ + E + + + +
Sbjct: 478 DNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSG 537
Query: 498 SSTAKND 504
SS A++D
Sbjct: 538 SSGAEDD 544
Score = 36.2 bits (84), Expect = 0.072
Identities = 16/64 (25%), Positives = 37/64 (57%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D E ++ D SD+ + +E+++E+ED + EE EE ++ + E ++T++++++
Sbjct: 474 DDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADI 533
Query: 502 KNDP 505
N
Sbjct: 534 SNSG 537
Score = 35.5 bits (82), Expect = 0.13
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
G + E + D + +++E+++EDE+ + EE EE ++ + E +T SS+
Sbjct: 471 GLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNN 530
Query: 501 AKND 504
A
Sbjct: 531 ADIS 534
Score = 33.5 bits (77), Expect = 0.50
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
DS+ D D D D+E + S + E+ EE ++ + E ++T++++++ N
Sbjct: 480 DLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSG 537
Score = 29.3 bits (66), Expect = 9.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ D+D ++ D ++E+++EDE+ + E EE
Sbjct: 474 DDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEE 513
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 37.8 bits (88), Expect = 0.019
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 417 DTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
+T G+ RSSA + R R S YE + D +E E E+ E
Sbjct: 111 ETAGSLRPIRSSAAAY--RDINRELGSFYEYP-------KTDEEKELLREVEELESRLAT 161
Query: 477 EEEEEEEEEEEGEEEE 492
E E EE+ E
Sbjct: 162 EPSPAPELEEQLALME 177
Score = 33.2 bits (76), Expect = 0.62
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 407 RPRDLQKTIQD------TTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYD-- 458
+ +D ++T+QD + ++ SS+ + ++ +S Y
Sbjct: 70 KQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDI 129
Query: 459 -----SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S E + +E++E E EE E E E E
Sbjct: 130 NRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELE 170
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 37.9 bits (88), Expect = 0.020
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 456 EYDSSEEEEEE--EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E +S ++E + E + EE EEE + + +E K
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQK 290
Score = 36.3 bits (84), Expect = 0.064
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 462 EEEEEEEDEE---EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EEE +++ + E E EE EEE + + K Q
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQ 289
Score = 35.9 bits (83), Expect = 0.083
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
++ D+E D E E EE EEE + + K Q
Sbjct: 244 ESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQ 289
Score = 35.2 bits (81), Expect = 0.11
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
++ D+E D E E EE EEE + + +E
Sbjct: 244 ESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRR 282
Score = 33.6 bits (77), Expect = 0.44
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE---------EEEEEEEEEEEEE 483
RR R ++ D S E D EE + +E +E++E+E++EE
Sbjct: 293 TRRVKMRPVRAKPSDEP---SLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEE 349
Query: 484 EEEEGEEEETETASSSTAK 502
+EE E+++ K
Sbjct: 350 SKEEVEKKQKVKKKPRKRK 368
Score = 32.1 bits (73), Expect = 1.2
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 444 EYE--DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E E D + D E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREI----EAEEAGIGPIEEEVVDSQAANDEP 280
Score = 31.3 bits (71), Expect = 1.9
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
E +S ++E + E E EE G EE S + ++
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRV 283
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 33.9 bits (78), Expect = 0.020
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
E+D EE+E+ + E+EE E ++EEEEE
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 30.0 bits (68), Expect = 0.46
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE 479
+FD EE + + E E+EE + ++EEEEE
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.60
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
+FD EE + + E E+EE E ++EEEE
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.3 bits (66), Expect = 0.81
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
E+D EE+E+ E E+EE E ++EE E A
Sbjct: 12 EFDKKLEEKEKALEAEKEEAEARQKEEEEEAI 43
Score = 29.3 bits (66), Expect = 0.84
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGE 489
EE+E E E+EE E ++EEEE
Sbjct: 18 EEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.3 bits (66), Expect = 1.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETA 496
EE+E+ E E+EE E + EEEE
Sbjct: 18 EEKEKALEAEKEEAEARQKEEEEEAIK 44
Score = 28.5 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEE 491
EE E+ E E+EE E ++EE EE
Sbjct: 18 EEKEKALEAEKEEAEARQKEEEEEA 42
Score = 28.1 bits (63), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E+ E + + EE+E+ E E+EE E ++EE E A
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAI 43
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 37.3 bits (86), Expect = 0.021
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
DSE E + ++ S + E E +EEE E E +E+E+E+ +G+ + +T + +
Sbjct: 220 DSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKS 279
Query: 502 K 502
+
Sbjct: 280 R 280
Score = 35.8 bits (82), Expect = 0.075
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
GD+ ++ E+ ++E+E EEEEE + E E ++ E+E+T+
Sbjct: 175 GDTPLNV-REHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTK 227
Score = 35.4 bits (81), Expect = 0.11
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 426 RSSAMNHNRRWNAR----NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
R + R+ + + E D + + E+ ++ E E EEEE
Sbjct: 193 REKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESS 252
Query: 482 EEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E E +E E+E+ + +D + P
Sbjct: 253 ESESDEDEDEDNKGKIRKRKTDDAKKSRKP 282
Score = 33.9 bits (77), Expect = 0.29
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE-------------EEEEE 482
WN + E + + EE + S+ E E D+ E+E+ + E E
Sbjct: 186 WNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSE 245
Query: 483 EEEEEGEEEETETASSSTAKN 503
EEEE E E++ K
Sbjct: 246 SEEEESSESESDEDEDEDNKG 266
Score = 32.3 bits (73), Expect = 0.92
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
DSE E + ++ S + E E EEEE E E +E+E E K
Sbjct: 220 DSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRK 270
Score = 30.4 bits (68), Expect = 3.6
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 28/83 (33%)
Query: 438 ARNGDSEYEDSD-----FDTSDEEYDSSEEEEEEEEDEEEEEEEEE-------------- 478
+ + E + S EEEE E E +E+E+E+
Sbjct: 218 TDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAK 277
Query: 479 ---------EEEEEEEEEGEEEE 492
E E+E E E
Sbjct: 278 KSRKPHIHIEYEQERENEKIPAV 300
Score = 30.0 bits (67), Expect = 4.3
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 208 SSNGDSEYEDSDF------DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+ + + E E SEEEE E E +E+E+E+ + + + +
Sbjct: 218 TDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAK 277
Query: 262 KN 263
K+
Sbjct: 278 KS 279
Score = 29.2 bits (65), Expect = 7.8
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+ S+ + E D + + E+ + E E EE E E+E+ N
Sbjct: 208 EESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDN 264
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 38.1 bits (89), Expect = 0.021
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE+ E++++ E+E E+++ E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 37.3 bits (87), Expect = 0.034
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 434 RRWNARNGDSEYEDSDFDTSDE-----------EYDSSEEEEEEEEDEEEEEEEEEEEEE 482
R A G + E+ D + EEE E++++ E+E
Sbjct: 227 RAAAALAGRTAVEEEDLALAARLVLAPRATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDE 286
Query: 483 EEEEEGEEEETE 494
EE+++ E+ E
Sbjct: 287 EEQDDAEDRALE 298
Score = 36.5 bits (85), Expect = 0.054
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ +EE E++++ E EEE+ +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAED 294
Score = 36.2 bits (84), Expect = 0.065
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ E E++++ E+EEE+++ E+ EE
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 35.8 bits (83), Expect = 0.085
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + EEE E++++ E+EEE ++ E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRAL 297
Score = 35.4 bits (82), Expect = 0.12
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ ED+++ E+EEE+++ E+ EE
Sbjct: 263 QPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 35.0 bits (81), Expect = 0.15
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EEE E++++ E+EEE+++ + E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 32.3 bits (74), Expect = 1.1
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+E E++++ E+EEE+++ E+ EE
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 36.8 bits (86), Expect = 0.021
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
S+EE++ +E EE E E E++EE +E E+E + A
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEA 39
Score = 34.5 bits (80), Expect = 0.13
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE++ +E+ EE E E E++EE E E + + A+
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADAR 42
Score = 34.1 bits (79), Expect = 0.14
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S+EE + +E+ EE + E E++EE +E E E+E E +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
Score = 32.6 bits (75), Expect = 0.44
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+E S E E E E+ EE +E E E+E +E + E E + A + + D +
Sbjct: 9 PQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSVL 62
Score = 32.6 bits (75), Expect = 0.51
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S+EE + +E+ EE E E E++EE +E E E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELE 33
Score = 32.6 bits (75), Expect = 0.54
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE + +E+ EE E E E++ E +E E +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
Score = 29.5 bits (67), Expect = 4.4
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 229 SSEE----EEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S+EE +E+ +E E E E++ E +E E +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 37.7 bits (88), Expect = 0.022
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 472 EEEEEEEEEEEEEEEEGEEEETETASSST 500
EEEEEEEEEEEEEE E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 37.0 bits (86), Expect = 0.038
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEE 490
EE+EEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 37.0 bits (86), Expect = 0.041
Identities = 16/22 (72%), Positives = 16/22 (72%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEE 491
EEEEEEEEEEEEEEE E
Sbjct: 404 AEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.043
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEET 493
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 36.6 bits (85), Expect = 0.048
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETAS 497
EEEEEEEEEEEEEEE E A
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAP 430
Score = 36.6 bits (85), Expect = 0.048
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
EEEEEE+EEEEEEEE E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 36.2 bits (84), Expect = 0.063
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETETASSST 260
EEEE+EEEEEEEEE E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 35.4 bits (82), Expect = 0.11
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEE 482
+ EEEEEEE+EEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 34.7 bits (80), Expect = 0.19
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 476 EEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EEEEEEEEEE EEEE + Q+
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
Score = 34.7 bits (80), Expect = 0.21
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEET 253
EEEEE+EEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 33.9 bits (78), Expect = 0.32
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETAS 257
+ EEEEEE+EEEEEEEE E A
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAP 430
Score = 33.9 bits (78), Expect = 0.34
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEE 481
++EEEEEEEE+EEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 33.5 bits (77), Expect = 0.46
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEE 251
++EEEEEEE+EEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 32.3 bits (74), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 236 EEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
+EEEEEEEEE EEEE + Q+
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
Score = 29.7 bits (67), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 239 EEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 271
EEEEEEE EEEE E + + +P
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLP 435
Score = 29.7 bits (67), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 479 EEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EEEEEEE EEEE E + + +P
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLP 435
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 37.7 bits (87), Expect = 0.022
Identities = 12/65 (18%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+SE +D +T + + + EE+D++ EEE+ + ++ + ++ + ++SS +
Sbjct: 96 ESEVQD---NTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGS 152
Query: 502 KNDPQ 506
Sbjct: 153 TTSGT 157
Score = 33.5 bits (76), Expect = 0.53
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
S E E ++ ++ ++ + + + EE++++ EEE+ ++ SS K +
Sbjct: 94 SQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 32.0 bits (72), Expect = 1.6
Identities = 8/56 (14%), Positives = 32/56 (57%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
++S+ + E+ ++ + + E+++++ EEE+ + ++ ++T+ S+++
Sbjct: 95 QESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSS 150
Score = 30.0 bits (67), Expect = 6.6
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE-----TETASSSTAKNDPQM 507
+ E + + + + +E++++ EEE+ + ++G+ + T+S ST
Sbjct: 101 DNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGTDLN 160
Query: 508 VTVPIT 513
T
Sbjct: 161 TKQSQT 166
Score = 29.6 bits (66), Expect = 8.0
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 212 DSEYED-----SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
+SE +D D S + + +++ EEED + ++ ++T+ S+++
Sbjct: 96 ESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSS 150
Score = 29.6 bits (66), Expect = 8.2
Identities = 9/51 (17%), Positives = 23/51 (45%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+D+ +D E D + EEE+ ++ + ++ + ++SS +
Sbjct: 107 QDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQPGVSTSSGSTTSGT 157
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 37.1 bits (86), Expect = 0.027
Identities = 12/52 (23%), Positives = 29/52 (55%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
A S+ S++E EEE E+++ E ++ ++++E++++EE +
Sbjct: 61 AAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 33.2 bits (76), Expect = 0.41
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S E + E +EE EEE E+++ E ++ + ++E+ +
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQ 107
Score = 32.1 bits (73), Expect = 1.1
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
S + EE EEE E+++ E ++ ++++E+ ++EE +
Sbjct: 63 GSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 36.1 bits (84), Expect = 0.032
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 102 IWLCVFLVISYIIGGAFLFS----HWEPWG------------FPDSAYFCFITLTTIGFG 145
+ L + L+ + I G LF + ++ + F TLTT G+G
Sbjct: 98 LLLLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWG 157
Query: 146 DFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAM 183
D T +I +L G+ LL +
Sbjct: 158 D------VMYDTLVPGTVLGKIFFVIFIILGGVLLLNL 189
Score = 32.3 bits (74), Expect = 0.61
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 20/98 (20%)
Query: 514 LCLMIMVGYIYGGAVLFS----KWEDW------------NILDGSYFCFISLSTIGFGDI 557
L L+++ + G LF K D + + + F +L+T G+GD+
Sbjct: 100 LLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDV 159
Query: 558 VPGDKITGKNNDIGVQTLELSFILCAMYLMLGMALIAM 595
+ +G + FI+ L+L + LI +
Sbjct: 160 M--YDTLVPGTVLGK-IFFVIFIILGGVLLLNL-LIGV 193
Score = 30.0 bits (68), Expect = 3.5
Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 675 VSFLIIISFILLGSLIFNKLENW----------------TFLDGTFFCFTSLGTIGFGEL 718
+ L++ F ++G +F + ++ + + F +L T G+G++
Sbjct: 100 LLLLLLFIFAIIGVQLFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDV 159
Query: 719 IPGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLI 757
TL + + +I++G ++ NL+
Sbjct: 160 -----MYDTLVPGTVLGKIFFVIFIILGGVLL---LNLL 190
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 35.1 bits (81), Expect = 0.033
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEE-------EEEEEEEEGEEEETETASSSTAKN 503
D + + +EEDE EE EE + EE E+ EEE+ E A +K
Sbjct: 49 DYIPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKSKG 108
Query: 504 DPQMV 508
+
Sbjct: 109 GYNAI 113
Score = 31.6 bits (72), Expect = 0.53
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEE----------EEEEGEEEETETASSSTAK 262
+ Y + EE+E EE EE EE E EEEE +
Sbjct: 55 SRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKS 106
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 34.8 bits (80), Expect = 0.033
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 449 DF-DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
DF + EE ++EE+E+ E+ E ++E E E + EE++ + + +T
Sbjct: 45 DFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATV 98
Score = 31.8 bits (72), Expect = 0.37
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
+D+ S +EE E++E+ E+ E ++E E E + EE + A P V
Sbjct: 43 TDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASK 101
Score = 31.0 bits (70), Expect = 0.73
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+F + +++ S +EE +E+E+ E+ E ++E E + E + A +P
Sbjct: 38 EFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEP 94
Score = 29.8 bits (67), Expect = 1.9
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ T++E+ + + E ++E E E + EE++ + + GE T + +
Sbjct: 51 QEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGA 106
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 37.3 bits (87), Expect = 0.034
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
+ D + + E +E+D++E++ + ++++EEE + E E T T + K D M +
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKLDAIMDLL 280
Score = 33.4 bits (77), Expect = 0.46
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E +D D + + ++++E++ + ++++EEE + E E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 33.4 bits (77), Expect = 0.55
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 214 EYEDSDFDTSDEEY---DSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 270
E +D D + + D +E++ + ++++EEE + E E T T + K D M +
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKLDAIMDLL 280
Score = 30.7 bits (70), Expect = 3.2
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
D + E ++ D+EEEE +E++++E++ + + + S +
Sbjct: 215 DVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPE 259
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 36.8 bits (86), Expect = 0.035
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+EEE DE EEE + EEEE E + +E
Sbjct: 36 EKEEERRIDEMMEEERLKALAEEEERERKRKE 67
Score = 35.3 bits (82), Expect = 0.10
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 461 EEEEEEEEDE------EEEEEEEEEEEEEEEEEGEEEETETA 496
E+E E EE+ E+ E EEE E E E EE+E E A
Sbjct: 144 EKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVA 185
Score = 35.3 bits (82), Expect = 0.12
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE+EEE +E EEE + EEEE E + E
Sbjct: 34 AEEKEEERRIDEMMEEERLKALAEEEERERKRKE 67
Score = 34.5 bits (80), Expect = 0.17
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ EE+EEE +E EEE + EEE E +
Sbjct: 33 KAEEKEEERRIDEMMEEERLKALAEEEERERK 64
Score = 34.5 bits (80), Expect = 0.20
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 462 EEEEEEEDEEEEEEE-----EEEEEEEEEEEGEEEETE 494
++EE EDE EE +E +EE E +E + E+EE E
Sbjct: 189 AQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAE 226
Score = 34.1 bits (79), Expect = 0.24
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE E +EE EE E EEE E + EEE
Sbjct: 301 EERRAAEREEELEEGERLREEEAERQARIEEE 332
Score = 34.1 bits (79), Expect = 0.29
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
++E + +E EEE + EEEE E + +EE
Sbjct: 36 EKEEERRIDEMMEEERLKALAEEEERERKRKEE 68
Score = 33.3 bits (77), Expect = 0.44
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEE-------EEEEEGEEEETE 494
EY + E EEE + E E +EE+E E +EE E E EE +
Sbjct: 157 EYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELD 202
Score = 33.3 bits (77), Expect = 0.50
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ D E EEE EEEE E + +EE EG
Sbjct: 40 ERRID--EMMEEERLKALAEEEERERKRKEERREGRAV 75
Score = 33.0 bits (76), Expect = 0.58
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE+EE E EEE EE E EEE E +
Sbjct: 298 EEKEERRAAEREEELEEGERLREEEAERQA 327
Score = 32.6 bits (75), Expect = 0.69
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE EEE +E EEE + EEEE E
Sbjct: 33 KAEEKEEERRIDEMMEEERLKALAEEEERE 62
Score = 32.2 bits (74), Expect = 1.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
EE+EE E EEE EE E EEE E
Sbjct: 298 EEKEERRAAEREEELEEGERLREEEAE 324
Score = 30.3 bits (69), Expect = 3.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EE+EE E EEE EE E EEE +
Sbjct: 298 EEKEERRAAEREEELEEGERLREEEAERQA 327
Score = 29.9 bits (68), Expect = 5.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEE-------EEEEEEEGEEEE 492
EE D EE E ++EE+E E EEE E+ E EE E E
Sbjct: 128 EEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAE 172
Score = 29.5 bits (67), Expect = 6.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 462 EEEEEEEDEEEEEEEE---EEEEEEEEEEGEEEE 492
EE +EE EEE E E E++ E+EE E E E
Sbjct: 247 EERLQEERAEEEAERERMLEKQAEDEELEQENAE 280
Score = 29.5 bits (67), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 461 EEEEEEEEDEEE------EEEEEEEEEEEEEEEGEEEE 492
EE E+E E+ +E +EE E +E ++E+EE E+
Sbjct: 192 EEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRR 229
Score = 29.5 bits (67), Expect = 7.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E + EEE EE + EEE E + EEE
Sbjct: 302 ERRAAEREEELEEGERLREEEAERQARIEEE 332
Score = 29.5 bits (67), Expect = 7.7
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEE----------EEEEEEEEEGEEEETE 494
EEY+ E ++E+EE E+ +++E E+EE +EE EEE E
Sbjct: 211 EEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE 260
Score = 29.5 bits (67), Expect = 7.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 466 EEEDEEEEEEEE-------EEEEEEEEEEGEEEETE 494
EEE E E EEE E+ E EEE E E E +
Sbjct: 142 EEEKEREREEELKILEYQREKAEREEEREAERRERK 177
Score = 29.5 bits (67), Expect = 8.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ D EEE + EEEE E +EE
Sbjct: 40 ERRIDEMMEEERLKALAEEEERERKRKEE 68
Score = 29.1 bits (66), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+EE EEE E E E++ E+EE E+E E+
Sbjct: 251 QEERAEEEAERERMLEKQAEDEELEQENAEK 281
Score = 29.1 bits (66), Expect = 9.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 461 EEEEEEEEDEEEEEEE-----EEEEEEEEEEEGEEE 491
E E E E +EE+E E ++EE E+E E +E
Sbjct: 168 EREAERRERKEEKEREVARLRAQQEEAEDEREELDE 203
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 34.2 bits (79), Expect = 0.035
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
E+E +E E+E EEE E+EE EEE+E
Sbjct: 56 VPNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 33.1 bits (76), Expect = 0.072
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E E+E +E EEE EEE E+ E EE +
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEED 88
Score = 31.9 bits (73), Expect = 0.21
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ E E E +E EEE EEE E+EE EEE+
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEED 88
Score = 31.6 bits (72), Expect = 0.31
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E ++E +E EEE EEE E+E EEE E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.4 bits (69), Expect = 0.67
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ + E E+E +E EEE EEE E+EE E E+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 29.6 bits (67), Expect = 1.3
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+++ E E+E E EEE EEE E+EE EE +E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 28.9 bits (65), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
E+E +E +EE EEE E EE E E
Sbjct: 56 VPNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + E+E +E EEE EEE E EE E E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 37.3 bits (86), Expect = 0.036
Identities = 16/81 (19%), Positives = 32/81 (39%)
Query: 426 RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ + +R + + Y+D + DT + E+ E+ EE EE++ +EE +
Sbjct: 182 KLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVK 241
Query: 486 EEGEEEETETASSSTAKNDPQ 506
E + +K Q
Sbjct: 242 RSKERTHKGRSLPDESKRSGQ 262
Score = 30.3 bits (68), Expect = 4.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ E E EE EE+E + +E E
Sbjct: 302 SQNRAERERSEESEEKELDRASPYQEIE 329
Score = 30.0 bits (67), Expect = 5.9
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 417 DTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE 476
+ G +R S+ + RW G ++ E + SEE EE+E D +E
Sbjct: 274 EEKGQESRGLSAVQTYLLRWVNARGRGRSQNR------AERERSEESEEKELDRASPYQE 327
Query: 477 EEE----EEEEEEEEGEEEETETASSSTAKNDPQMVTVPITL 514
E + + + + + + P L
Sbjct: 328 IEITANLQIPPSDLIRMLRKGDGRKPRGRVEEEGALEAPEAL 369
Score = 29.6 bits (66), Expect = 7.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 221 DTSDEEYDSSEEEEEE------------EDEEEEEEEEEGEEEETE 254
+ SDE S +++E++ E+ EEGEE++T+
Sbjct: 192 ERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQ 237
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 35.2 bits (81), Expect = 0.040
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
GDS D + ++SS E +EEEEEEEE E +++ E
Sbjct: 61 GDSSTGDQSPAAA-AAHNSSPPEGPAGTTSGTGHTRQEEEEEEEENEKQQQSDEA 114
Score = 34.4 bits (79), Expect = 0.062
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEE-----EEEEEEEEGEE 490
TS + EEEEEEEE+E++++ +E + + E E GEE
Sbjct: 88 TSGTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 31.3 bits (71), Expect = 0.80
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEE 247
TS + EEEEEEE+ E++++ +E
Sbjct: 88 TSGTGHTRQEEEEEEEENEKQQQSDE 113
Score = 30.5 bits (69), Expect = 1.3
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 208 SSN--GDSEYEDSDFDTSDEEYDSS------------EEEEEEEDEEEEEEEEEGEEEET 253
SSN GDS D + ++SS +EE+EEEEE E++ + +E
Sbjct: 56 SSNTTGDSSTGDQSPAAA-AAHNSSPPEGPAGTTSGTGHTRQEEEEEEEENEKQQQSDEA 114
Query: 254 E 254
+
Sbjct: 115 Q 115
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 36.6 bits (85), Expect = 0.041
Identities = 11/51 (21%), Positives = 29/51 (56%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
T+ + D E++ E + + E+++++++E++E + EGE + + K
Sbjct: 51 TTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 30.8 bits (70), Expect = 3.2
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 14/78 (17%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEE--------------EEDEEEEEEEEEEEEEEEEEE 487
Y + + + SEEE + E +++ E+++++++E++E +
Sbjct: 25 SYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPK 84
Query: 488 GEEEETETASSSTAKNDP 505
E E +
Sbjct: 85 SEGETKLGFKTPKKSKKT 102
Score = 29.3 bits (66), Expect = 7.9
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+ + E E+++++ +E++E + EGE + + K
Sbjct: 60 EDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 36.2 bits (84), Expect = 0.044
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 17/68 (25%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEE--------EEED---------EEEEEEEEEEEEEEE 484
D E + + +S+ Y EE ++ EE+D + E EEEEEE EE
Sbjct: 113 DLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEE 172
Query: 485 EEEGEEEE 492
EEE +E E
Sbjct: 173 EEEVKEPE 180
Score = 36.2 bits (84), Expect = 0.046
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ +++ SSE + E EEEEEE EEEEE +E
Sbjct: 133 ESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKE 178
Score = 35.0 bits (81), Expect = 0.095
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEE----EEEEEDEEEEEEEEEEEEEEEEEE 487
+ + S EE DSS E + E +EEEEE EEEEE +E E+
Sbjct: 132 EESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 32.0 bits (73), Expect = 1.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E +E+ E +EE ++ E + EE +++SS + D
Sbjct: 115 ENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVD 158
Score = 31.2 bits (71), Expect = 1.6
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 208 SSNGDSEY--EDSDFDTSDEEYDSSEEE---------EEEEDEEEEEEEEEGEEEE 252
SS G E + S EE DSS E EEEE+E EEEEE E E+
Sbjct: 126 SSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 29.7 bits (67), Expect = 5.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 460 SEEEEEEEEDEEEEEEEEE-EEEEEEEEEGEEEETETASSS 499
S+ E +ED E EE ++ E + E + +SSS
Sbjct: 112 SDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSS 152
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 35.6 bits (82), Expect = 0.046
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
T + E+EE E EE + EE EE +++ + E + + ++ D
Sbjct: 64 TKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 35.6 bits (82), Expect = 0.054
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++E+EE + EE + EE EE +++ + E + +++ N
Sbjct: 70 KKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHE 115
Score = 32.9 bits (75), Expect = 0.36
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
T+ + +E+EE E EE + EE EE +++ E +++ ++ +
Sbjct: 63 TTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVI 118
Score = 32.9 bits (75), Expect = 0.37
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+EE + EE+EE +++ + E + + E + S K
Sbjct: 82 AEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLK 124
Score = 31.7 bits (72), Expect = 1.0
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
E+ + E EE D EE EE +++ + E + +D ++ T I
Sbjct: 73 EKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKLATENI 130
Score = 29.4 bits (66), Expect = 5.2
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
T ++ + E E E+ + EE EE +++ + E + + T + D
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVID 119
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 35.9 bits (83), Expect = 0.052
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E S EE + EEEEE EEEEE+ +EE +EE + ++
Sbjct: 86 YRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKST 131
Score = 32.4 bits (74), Expect = 0.63
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
S+ EE + EEEEE EEEEE+ +E E++E S+ + ++
Sbjct: 92 KSKALEEPDAAAAPEEEEEMEEEEEDIDE-EKKEESAKKSTPPIKEMKIPA 141
Score = 31.6 bits (72), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ + + +++ + EE + EEEEE EEEEE+ +EE++ E + T K
Sbjct: 81 LNELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMK 138
Score = 30.5 bits (69), Expect = 2.7
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ D EEEE EEE+E+ +EE++EE ++ +E + A S K
Sbjct: 94 KALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKDY 153
Query: 508 VTVPIT 513
V
Sbjct: 154 VPSGNK 159
Score = 29.3 bits (66), Expect = 6.8
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ Y + + E + EEEE+ EEEEE+ +EE++EE + + A
Sbjct: 83 ELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAA 142
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 36.6 bits (84), Expect = 0.052
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
S +D D +D E + +EE +++E EE EEEE + E + E+ + A+
Sbjct: 411 SAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAE 470
Query: 503 NDP 505
P
Sbjct: 471 LQP 473
Score = 35.1 bits (80), Expect = 0.18
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE-EEETETASSST 500
D + D++ DEE + E EE EEEE + E + E+E+ E +E E S +
Sbjct: 417 DPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSES 476
Query: 501 A 501
A
Sbjct: 477 A 477
Score = 32.4 bits (73), Expect = 1.2
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 441 GDSEYEDS---DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
G S Y+ D + D + + E +D++ +E + EE +EE ++ E
Sbjct: 384 GTSFYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNE 438
Score = 31.2 bits (70), Expect = 2.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
Y + E+EEEED + +EE ++++ E + E A
Sbjct: 388 YQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAG 428
Score = 30.4 bits (68), Expect = 4.2
Identities = 17/63 (26%), Positives = 25/63 (39%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D + D + S + D +E + EE +EE ++ E EE EEE
Sbjct: 400 DGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDME 459
Query: 502 KND 504
K D
Sbjct: 460 KED 462
Score = 30.4 bits (68), Expect = 4.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+ D +DEE S ++++ ++ + EE +EE ++ EG EE +
Sbjct: 395 DEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSP 445
Score = 29.7 bits (66), Expect = 7.5
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 442 DSEYED---SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D E ED +D +++ D + +E + E+ +EE ++ E EE EEE
Sbjct: 395 DEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEE 448
Score = 29.7 bits (66), Expect = 8.1
Identities = 16/52 (30%), Positives = 21/52 (40%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S +D D +D E + +EE +D E EE EEE K D
Sbjct: 411 SAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKED 462
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 36.2 bits (84), Expect = 0.056
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 458 DSSEEEEEEEEDEE---EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+ EEE +E+D E EE EEE E EE +++EG +E ++ + V
Sbjct: 129 EEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDV 182
Score = 35.8 bits (83), Expect = 0.069
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ ++E ++ +E++ E EE EEE E EE +++E E + +S T +
Sbjct: 125 KYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAK 180
Score = 33.5 bits (77), Expect = 0.37
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
DEE + E++ E +E EEE E EE +++E + + + S + D
Sbjct: 130 EDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVL 183
Score = 33.5 bits (77), Expect = 0.44
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 199 IAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
K + + E E+ + D D E E EEE E EE +++E E + +S
Sbjct: 115 KKKGFSFKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTS 174
Query: 259 STAKND 264
T +
Sbjct: 175 LTPQAK 180
Score = 33.5 bits (77), Expect = 0.46
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 446 EDSDFDTSDEEYDSSE-EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ D + + +E D+ EE EEE E EE +++E +E + + G+ T A
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQA 179
Score = 32.8 bits (75), Expect = 0.63
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 216 EDSDFDTSDEEYDS--SEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
+ D + + +E D+ EE EEE E EE +++EG +E ++ + V
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDV 182
Score = 30.8 bits (70), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 456 EYDSSEEEEEEEEDEEEE---EEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+Y + E+EEE ++++ E EE EEE E EE ++ E + PQ
Sbjct: 125 KYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQ 178
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 34.7 bits (80), Expect = 0.058
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 473 EEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E +EEEEEE EEEE E + E S S ++
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 33.1 bits (76), Expect = 0.18
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E +E+EEEE EEEE E + E S S ++
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 29.3 bits (66), Expect = 4.1
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEE 479
+SS+EEEEEE +EEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 28.9 bits (65), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEE 482
SE +EEEE+E EEEE E + E
Sbjct: 52 SESSDEEEEEEAEEEEAETGDVE 74
Score = 28.9 bits (65), Expect = 4.8
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEG 488
E ++EEEEE EEEE E + E G
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAG 76
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 36.4 bits (84), Expect = 0.061
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E +EEE EEEEE + EE E E E A P
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAP 439
Score = 35.2 bits (81), Expect = 0.14
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
++ + + E ++EE EEEEE + EE E EG E
Sbjct: 390 EKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 33.3 bits (76), Expect = 0.54
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E +EEE EEEEE + EE E E E + AS++ A
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAPA 440
Score = 32.9 bits (75), Expect = 0.78
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E +E+E EEEEE + EE E E E + ++S A ++V
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAPAGIKIV 445
Score = 32.1 bits (73), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
E +EEE +EEEE + EE E E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFEVPA 429
Score = 31.4 bits (71), Expect = 2.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
EEE EEE+E + EE E E E A P
Sbjct: 405 EEEIEEEEEAMQPEEMEMEGFEVPALQMPAASAAP 439
Score = 30.2 bits (68), Expect = 5.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 232 EEEEEEDEEEEEEEEEGEEEETE 254
E +EE+ EEEEE + EE E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEME 423
Score = 29.4 bits (66), Expect = 8.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
++ + + E DEEE EEEEE + E
Sbjct: 390 EKGHPVVKRVVREVDEEEIEEEEEAMQPEEM 420
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 36.2 bits (83), Expect = 0.061
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+S EDS S E S+EE+ + E +E EE E E+E +E ++ S+ST
Sbjct: 377 ESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSAST 435
Score = 32.7 bits (74), Expect = 0.75
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE---EEEEEEEEEEEEGEEEETETASSST 500
+ E S+ D+ D S + EE+ D E E EE E E+E +E + S++
Sbjct: 375 DSESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSAS 434
Query: 501 AKNDPQ 506
++ Q
Sbjct: 435 TESRSQ 440
Score = 30.8 bits (69), Expect = 3.3
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE------------EEEEEEEEEEEGEEEET 493
E+ S+E SSEE E EDE +E +E + E++ EE+++
Sbjct: 396 EEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQESQSEQDSRSEEDDS 455
Query: 494 ETASSSTAKND 504
++ SS +K D
Sbjct: 456 DSQDSSRSKED 466
Score = 30.0 bits (67), Expect = 5.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
+S EDS S E S+EE+ + E E EE E + SSS
Sbjct: 377 ESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSS 424
Score = 30.0 bits (67), Expect = 5.8
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
S+E +E + E++ EE++ + ++ +E+ T S+S+++ D Q
Sbjct: 434 STESRSQESQSEQDSRSEEDDSDSQDSSRSKEDSNSTESASSSEEDGQ 481
Score = 29.6 bits (66), Expect = 8.4
Identities = 20/71 (28%), Positives = 28/71 (39%)
Query: 429 AMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ +R N N S ED + S EE E + EE+ + E E EE
Sbjct: 354 VVSESRGDNPDNTTSHSEDQEDSESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEES 413
Query: 489 EEEETETASSS 499
E + SSS
Sbjct: 414 PESTEDENSSS 424
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 35.7 bits (82), Expect = 0.061
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
D E D S+ E+++ EEE+E+ + +++ E E SS+ +++
Sbjct: 154 DILGEGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGG 210
Score = 31.5 bits (71), Expect = 1.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEET-ETASSSTAK-ND 504
EEDEE+ E E E E+EEG E E A++ A+ ND
Sbjct: 221 NEEDEEDAESESSFESSNEDEEGSSSEADEMAAALEAELND 261
Score = 31.1 bits (70), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE+EED E E E E+EE E +E A
Sbjct: 221 NEEDEEDAESESSFESSNEDEEGSSSEADEMAAA 254
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 34.0 bits (79), Expect = 0.063
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EEEE++E E EEE EE E E EEE EE
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 29.7 bits (68), Expect = 1.7
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE+E++E E EEE EE E EEE E
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELE 31
Score = 29.7 bits (68), Expect = 1.9
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E + E++E E EEE EE E E EEE EE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEEL 33
Score = 29.0 bits (66), Expect = 3.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EEE++E + EEE EE E E EEE E +
Sbjct: 5 EEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 28.2 bits (64), Expect = 6.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ +E E E+E EE E E EEE EE
Sbjct: 6 EEDDEMRELAEEELEELEAELEEELEELL 34
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 35.1 bits (80), Expect = 0.064
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 454 DEEYDSSEEEEEEEEDE----EEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+EE EEE E++E + EEEE++E+EE+E + ++EE E + A+
Sbjct: 72 EEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAE 124
Score = 35.1 bits (80), Expect = 0.071
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE D E EE + EE EEE +EEE E+E
Sbjct: 50 EEQDRLEREELKRRAAEERLRREEEARRQEEERAREKE 87
Score = 33.9 bits (77), Expect = 0.14
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE + E+EE++ + EE + EE EEE +E E A
Sbjct: 42 EEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERA 83
Score = 33.9 bits (77), Expect = 0.18
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
RR E E+ ++E EE +EE+ E+EE+ + + EEEE+ E+EE
Sbjct: 46 RREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQ 105
Query: 494 ETA 496
E
Sbjct: 106 ERI 108
Score = 33.5 bits (76), Expect = 0.21
Identities = 19/100 (19%), Positives = 40/100 (40%)
Query: 405 PTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEE 464
P + + + T G + ++ + +R AR + E + +++ EE +
Sbjct: 2 PGKAENSAALGKPTAGTTDAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELK 61
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+E EEE +EEE +EE+ + + K +
Sbjct: 62 RRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQE 101
Score = 32.0 bits (72), Expect = 0.66
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EE E+E++ + + EEEE++E+EE+E +++ E A + + +M
Sbjct: 80 EERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERM 126
Score = 30.4 bits (68), Expect = 2.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E+ + E+E E+E+++ E EE + EE EEE A+ +
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEE 88
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 36.7 bits (84), Expect = 0.065
Identities = 24/76 (31%), Positives = 34/76 (44%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
N N EY++ + + +E + + EE EE EE EE EE EE EE EE
Sbjct: 1052 NVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENA 1111
Query: 493 TETASSSTAKNDPQMV 508
E A + + D +
Sbjct: 1112 EENAEENAEEYDDENP 1127
Score = 36.3 bits (83), Expect = 0.086
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 410 DLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEED 469
++++ I++ Y+ + N N E + + + +E + + EE EE
Sbjct: 1052 NVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENA 1111
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETE 494
EE EE EE ++E EE EE E
Sbjct: 1112 EENAEENAEEYDDENPEEHNEEYDE 1136
Score = 35.5 bits (81), Expect = 0.13
Identities = 25/89 (28%), Positives = 37/89 (41%)
Query: 415 IQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE 474
+++ Y+ + N N E + + + EE + + EE EE EE E
Sbjct: 1030 VEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVE 1089
Query: 475 EEEEEEEEEEEEEGEEEETETASSSTAKN 503
E EE EE EE EE E A + +N
Sbjct: 1090 ENVEEIEENVEENVEENAEENAEENAEEN 1118
Score = 35.1 bits (80), Expect = 0.17
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E + + + EEYD EE EE EE EE EE EE +EE EE E + +N
Sbjct: 1024 EENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEEN 1083
Score = 35.1 bits (80), Expect = 0.18
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 410 DLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEED 469
++++ I++ Y+ + N E E++ + +E + + EE +EE
Sbjct: 1010 NVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENV 1069
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETE 494
EE EE EE EE EE EE E
Sbjct: 1070 EEIEENIEENIEENVEENVEENVEE 1094
Score = 34.0 bits (77), Expect = 0.39
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + E++ + +E + + EE EE +E EE EE EE EE EE + E
Sbjct: 1068 NVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENP 1127
Query: 497 SSSTAKND 504
+ D
Sbjct: 1128 EEHNEEYD 1135
Score = 34.0 bits (77), Expect = 0.41
Identities = 25/71 (35%), Positives = 31/71 (43%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
N N E + + + + EEYD EE EE EE +EE EE EE EE EE
Sbjct: 998 NVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENI 1057
Query: 493 TETASSSTAKN 503
E +N
Sbjct: 1058 EENIEEYDEEN 1068
Score = 33.6 bits (76), Expect = 0.49
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 442 DSEYEDSD--FDTSDEEY----DSSEEEEEEEEDEE---EEEEEEEEEEEEEEEEGEEEE 492
D+ Y D D FD ++Y D SE+E E+ +EE + EEE +E EE ++
Sbjct: 407 DALYTDEDLLFDLEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDS 466
Query: 493 TETAS 497
E S
Sbjct: 467 GEQQS 471
Score = 32.8 bits (74), Expect = 0.77
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E + + + DEE EE EE EE EE EE +EE EE EE E + +N
Sbjct: 1028 EEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEEN 1087
Score = 32.8 bits (74), Expect = 0.79
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N + E++ + +E + + EE EE EE EE EE EE EE +EE E +
Sbjct: 974 NVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEEN 1033
Query: 500 TAKNDPQMV 508
+ D + V
Sbjct: 1034 VEEYDEENV 1042
Score = 32.8 bits (74), Expect = 0.91
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E D + EE +EE EE EE EE EE EE EE +EE E +
Sbjct: 1018 NVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIE 1077
Query: 502 KN 503
+N
Sbjct: 1078 EN 1079
Score = 32.1 bits (72), Expect = 1.5
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E++ + +E + + EE EE EE EE EE EE EE EE E
Sbjct: 958 DAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVE 1012
Score = 32.1 bits (72), Expect = 1.7
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E ++D + E EE +EE+ EE EE EE EE EE EE E +N
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEEN 1075
Score = 31.7 bits (71), Expect = 1.8
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 414 TIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE 473
I N + + N E + D + + EE + EE EE EE
Sbjct: 923 LINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEE---NVEENVEENVEENV 979
Query: 474 EEEEEEEEEEEEEEGEEEETE 494
EE EE EE EE EE E
Sbjct: 980 EENVEENVEENVEENVEENVE 1000
Score = 31.7 bits (71), Expect = 1.8
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EE + + EE EE EE EE +EE EE EE EE E + +N ++
Sbjct: 1043 EEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEI 1095
Score = 31.7 bits (71), Expect = 1.9
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
N + + E++ + +E + + EE EE EE EE EE EE EE EE E
Sbjct: 954 NVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVE 1008
Score = 31.7 bits (71), Expect = 2.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
N + E++ + +E + + EE EE EE EE EE EE EE EE E
Sbjct: 962 NVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIE 1016
Score = 31.3 bits (70), Expect = 2.7
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N + E++ + +E + + EE EE EE EE EE EE EE EE E
Sbjct: 970 NVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEE 1029
Query: 500 TAKN 503
+N
Sbjct: 1030 VEEN 1033
Score = 31.3 bits (70), Expect = 2.9
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N + E++ + +E + + EE EE EE EE EE EE EE EE E
Sbjct: 966 NVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEE 1025
Query: 500 TAKNDPQMV 508
+ + V
Sbjct: 1026 NVEEVEENV 1034
Score = 31.3 bits (70), Expect = 2.9
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N + E++ + +E + + EE EE EE EE EE EE +EE EE E
Sbjct: 978 NVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEY 1037
Query: 500 TAKNDPQM 507
+N ++
Sbjct: 1038 DEENVEEI 1045
Score = 31.3 bits (70), Expect = 2.9
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 450 FDTSDEE-YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D S++E + +EEE + +EEE +E EE ++ GE++ + + + N+
Sbjct: 428 LDGSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNE 483
Score = 30.9 bits (69), Expect = 3.4
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
+DL I N+ + + + ++ E+ + +E+ + + EE EE
Sbjct: 911 KDLSGNIAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEEN 970
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETE 494
EE EE EE EE EE EE E
Sbjct: 971 VEENVEENVEENVEENVEENVEENVE 996
Score = 30.9 bits (69), Expect = 3.5
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
N + E++ + +E + + EE EE DEE EE EE EE +EE EE E E A +
Sbjct: 994 NVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIE-ENAEEN 1052
Query: 500 TAKN 503
+N
Sbjct: 1053 VEEN 1056
Score = 30.9 bits (69), Expect = 3.7
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
EE +EE EE EE EE +EE EE EE EE E + + D + V
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENV 1069
Score = 30.1 bits (67), Expect = 5.5
Identities = 22/65 (33%), Positives = 30/65 (46%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ N N E + + + EE + + EE +EE EE EE EE EE EE E
Sbjct: 1003 IEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIE 1062
Query: 490 EEETE 494
E + E
Sbjct: 1063 EYDEE 1067
Score = 30.1 bits (67), Expect = 5.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 212 DSEYEDSD--FDTSDEEY----DSSEEEEEEEDEEEEEEEEEGEEEETE 254
D+ Y D D FD ++Y D SE+E E++EEE + EE +
Sbjct: 407 DALYTDEDLLFDLEKQKYMDMLDGSEDESVEDNEEEHSGDANEEELSVD 455
Score = 30.1 bits (67), Expect = 5.9
Identities = 22/71 (30%), Positives = 28/71 (39%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E D EE E EE++ DE EE EE EEE EE E +S
Sbjct: 500 ADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPASDVQ 559
Query: 502 KNDPQMVTVPI 512
++ T+ I
Sbjct: 560 QDSEAAPTIEI 570
Score = 30.1 bits (67), Expect = 6.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
ED++ + ++ ++ EE EE +E EE EE EE EE EE E + +N
Sbjct: 949 EDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEEN 1006
Score = 29.8 bits (66), Expect = 7.6
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
++L+ ++ + + + N E + + + + EE EE EE
Sbjct: 926 KELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEE 985
Query: 469 DEEEEEEEEEEEEEEE--EEEGEEEETETASSSTAKNDPQMV 508
+ EE EE EE EE EE EE E + + D + V
Sbjct: 986 NVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 34.5 bits (79), Expect = 0.068
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E + E + EEE++E +E E EEE + + EEE E
Sbjct: 22 GKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 32.6 bits (74), Expect = 0.27
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
DE +S EEE+EE E E EEE + + + E E E
Sbjct: 22 GKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Score = 29.9 bits (67), Expect = 2.5
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 20/73 (27%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE-----EEEEEE--------------EE 481
G E ++ D ++EE + +E E E+E + EEE E EE
Sbjct: 21 GGKE-DEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEE 79
Query: 482 EEEEEEGEEEETE 494
+EEE + EE E
Sbjct: 80 DEEEPQAAAEEEE 92
Score = 29.1 bits (65), Expect = 5.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+E + E + EEEDEE +E E EEE
Sbjct: 22 GKEDEGDESDAEEEDEEIQEALREAEEERKA 52
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 35.3 bits (82), Expect = 0.076
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++D E E E E EE EEE EE
Sbjct: 23 DFDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEE 59
Score = 34.1 bits (79), Expect = 0.20
Identities = 11/36 (30%), Positives = 11/36 (30%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E E E EE EEE E E
Sbjct: 25 DPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 33.8 bits (78), Expect = 0.27
Identities = 11/34 (32%), Positives = 11/34 (32%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E E EE EEE EEE
Sbjct: 27 PPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 33.8 bits (78), Expect = 0.29
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
DFD E E E EE EEE EEE
Sbjct: 23 DFDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 33.4 bits (77), Expect = 0.38
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E E E EE EEE EEE E
Sbjct: 29 EPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELE 62
Score = 31.4 bits (72), Expect = 1.7
Identities = 9/33 (27%), Positives = 9/33 (27%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E E E E EE EE T
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTE 58
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 34.5 bits (80), Expect = 0.076
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E EE ++EEEEE+++ ++ E+E+ ++ +T + K
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLK 150
Score = 31.8 bits (73), Expect = 0.57
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E EE +E+EEEE+++ ++ E+E+ E ++ S
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPS 148
Score = 30.3 bits (69), Expect = 1.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
YD + E EE +EEEEEE+++ ++ +E+ T
Sbjct: 100 YDPENGFGLQFEPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 34.8 bits (80), Expect = 0.080
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +E EEEE EE EE EE E
Sbjct: 153 AEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 34.8 bits (80), Expect = 0.090
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E++ E EE EEEE EE EE E +
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 33.6 bits (77), Expect = 0.20
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E++ E EE EEEE EE EE S
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 33.6 bits (77), Expect = 0.23
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E EE EEEE EE EE EE+
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 32.4 bits (74), Expect = 0.46
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E E++ E EE EEEE EE E A + +
Sbjct: 144 AEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 32.4 bits (74), Expect = 0.56
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+++ + EE EEEE EE EE E E
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 32.1 bits (73), Expect = 0.70
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E E E++ E EE EEEE E A + A
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPA 181
Score = 31.3 bits (71), Expect = 1.3
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+E++ E E E++ E EE E E A + A+ P
Sbjct: 135 AEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAP 180
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 34.9 bits (80), Expect = 0.088
Identities = 10/55 (18%), Positives = 31/55 (56%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
N + E + ++ ++++ E+E+ ++ +++ +E EE +++ ++ E E E
Sbjct: 9 NKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 33.7 bits (77), Expect = 0.21
Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 456 EYDSSEEEEEEEEDEEEEEE-----EEEEEEEEEEEEGEEEETE 494
E + ++EEE++ + E+ E+E+ ++ + ++ +E E
Sbjct: 5 EKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIE 48
Score = 32.2 bits (73), Expect = 0.77
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+ + + + EE E+ E E+E+ ++ + +++ +E E
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIE 48
Score = 31.4 bits (71), Expect = 1.2
Identities = 9/55 (16%), Positives = 25/55 (45%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
N+ + + ++E + +++ DE EE +++ +++E E +E
Sbjct: 9 NKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 30.3 bits (68), Expect = 3.1
Identities = 8/44 (18%), Positives = 26/44 (59%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
K N + E + ++ ++++ E+E+ ++++ +++ +E EE
Sbjct: 6 KEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEE 49
Score = 29.5 bits (66), Expect = 4.6
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE + +EEE++ E+ E E+E+ + + +
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQ 41
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 35.5 bits (82), Expect = 0.088
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 198 AIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
A+ LG + D ++ D D + YDSS+ + + + + EE+ E+ +
Sbjct: 271 AVYWFLGEAIDEDSDYSSDEDDDD--YDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGA 328
Query: 258 SSTAK 262
S
Sbjct: 329 KSNEL 333
Score = 33.6 bits (77), Expect = 0.35
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEE-EEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
DS+Y + D + YDSS+ + D + EE++ E+E + E
Sbjct: 283 DSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKSNEL 333
Score = 32.1 bits (73), Expect = 1.0
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
D + + S + D++YDS + + D + + EE++ E+E + E +S
Sbjct: 281 DEDSDYSSDE-DDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKESNGAKSNELHLTS 337
Score = 31.3 bits (71), Expect = 2.2
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E D D D S +E D + + + D + + + EE++ GE+E
Sbjct: 278 EAIDEDSDYSSDE-DDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKES 325
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 36.0 bits (84), Expect = 0.090
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVT 509
+++ EE+EE E E ++EE EEE+ EEE + E+ AK DP+ V
Sbjct: 477 AAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEEVA 531
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 35.8 bits (82), Expect = 0.090
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D +E+ ++ E E EE E + EE E EE + E SS A
Sbjct: 413 DAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLA 463
Score = 34.2 bits (78), Expect = 0.30
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 202 HLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDE-----EEEEEEEEGEEEETETA 256
I S D+E E D E E EE E EE E EE + E
Sbjct: 403 LRFISTYSWADAEEEKKTKKLQ----DLREPEGEEAVERTRKPSLSEEVAETEEWDKEQR 458
Query: 257 SSSTA 261
SS A
Sbjct: 459 SSKLA 463
Score = 31.5 bits (71), Expect = 2.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D+E E D E E EE + + EE E EE + E+ ++ AS T
Sbjct: 413 DAEEEKKTKKLQD----LREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASWVT 467
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 35.7 bits (83), Expect = 0.093
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
SE EE EEE + E E E + ++E+EG EE
Sbjct: 230 SETEEREEETDVEIETTSETKGTKQEQEGSTEE 262
Score = 35.0 bits (81), Expect = 0.18
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
S EE EEE D E E E + ++E+E EE+ S
Sbjct: 230 SETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFS 268
Score = 32.7 bits (75), Expect = 0.84
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
F +E +EE EEE + E E E + ++E+E EE+
Sbjct: 222 FTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEED 263
Score = 31.1 bits (71), Expect = 2.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+E E EE EEE + E E E + + E+E + S +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEK 271
Score = 30.0 bits (68), Expect = 7.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+T + E ++ E E E + ++E+E EE+ EE+E
Sbjct: 230 SETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKE 272
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 35.4 bits (82), Expect = 0.094
Identities = 15/73 (20%), Positives = 29/73 (39%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
W + +++ ED E + E ++ EE DE +E E EE ++ +E
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPE 188
Query: 494 ETASSSTAKNDPQ 506
++ S +
Sbjct: 189 QSTMSRPQEVKQS 201
Score = 31.2 bits (71), Expect = 2.0
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 445 YEDSDFDTSDEEYDSSEEEE--EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
Y+ D + E D E +E E E +E ++ +E E+ E S A+
Sbjct: 146 YDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQ 205
Query: 503 NDPQMVTVPIT 513
P P+
Sbjct: 206 QAPPNPQQPMP 216
Score = 30.1 bits (68), Expect = 4.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 270
D E +D D D + E ++ EE +E +E EE + ++ A ++P+ T+
Sbjct: 135 DQEADDED-DIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTM 192
Score = 29.7 bits (67), Expect = 6.4
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
+E + E E EE D+ +E E+ +E + + N Q +
Sbjct: 158 QDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSVPAQQAPPNPQQPMPS 217
Query: 511 PI 512
Sbjct: 218 AS 219
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.6 bits (82), Expect = 0.094
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++E+ E+++ EE +++ E+E ++ E+E +E+ + A
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
Score = 34.4 bits (79), Expect = 0.20
Identities = 9/37 (24%), Positives = 23/37 (62%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE+ ++ E+++ EE ++++ E+E ++ E E
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKE 109
Score = 34.4 bits (79), Expect = 0.25
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE ++++ E+E ++ E+E +E +++ E A
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAA 124
Score = 33.2 bits (76), Expect = 0.51
Identities = 9/46 (19%), Positives = 28/46 (60%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E+E ++++++ EE ++ ++++ EE + A+++ AK + +
Sbjct: 107 EKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAE 152
Score = 32.9 bits (75), Expect = 0.69
Identities = 9/42 (21%), Positives = 24/42 (57%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E+E +E++++ EE ++ ++ + EE +++ AK
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Score = 32.9 bits (75), Expect = 0.74
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ E+ +++E+ + EE ++++ E+E ++ E+E
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKER 110
Score = 32.1 bits (73), Expect = 1.1
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+EE ++++ E+E ++ E+E +E+ ++ E
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Score = 32.1 bits (73), Expect = 1.2
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+E ++ E+E +E++++ EE + + + A
Sbjct: 98 AEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAA 139
Score = 32.1 bits (73), Expect = 1.2
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE + E+E + E+E +E++++ EE ++
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL 129
Score = 31.7 bits (72), Expect = 1.6
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ EE +++ E+E ++ E+E + ++++ E A
Sbjct: 88 QAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Score = 30.9 bits (70), Expect = 3.0
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+E ++ ++E +E++++ EE + + + A + AK
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 30.5 bits (69), Expect = 3.1
Identities = 7/44 (15%), Positives = 23/44 (52%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E ++E+++ E+ ++++ E+E ++ E+E + +
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQ 116
Score = 30.5 bits (69), Expect = 4.0
Identities = 6/42 (14%), Positives = 22/42 (52%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ + +E ++ E E +E++++ EE ++ ++ +
Sbjct: 94 QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Score = 30.2 bits (68), Expect = 4.7
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+Y+ +++++ + EE+ +++E+++ EE ++ + E E
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQE 101
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 35.8 bits (83), Expect = 0.096
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E+ S EE+ S +E EE E+ E+ E+ E EE + E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEV 493
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 32.3 bits (74), Expect = 0.098
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E++EEE+ +E E ++ E E +E EG+ ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 32.3 bits (74), Expect = 0.11
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
Y +E++EEE+ EE E ++ E E +E + +
Sbjct: 32 YPPDKEKKEEEKAEEARERDQLELELAKELSEGDLD 67
Score = 28.4 bits (64), Expect = 2.4
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ E+ + + EE E D+ E E +E E + ++
Sbjct: 32 YPPDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 34.4 bits (79), Expect = 0.10
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
S E + EE E+E E E EE EE EE E+ E E A
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELA 39
Score = 32.9 bits (75), Expect = 0.34
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +EE + E E EE EE EE E+ E E +E E
Sbjct: 4 EIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 32.9 bits (75), Expect = 0.34
Identities = 18/43 (41%), Positives = 20/43 (46%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E +EE EEE E E EE EE EE E+ E E A
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERA 43
Score = 31.7 bits (72), Expect = 0.87
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E+ + EE EEE E E EE EE ET S
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKS 34
Score = 30.2 bits (68), Expect = 2.6
Identities = 16/33 (48%), Positives = 16/33 (48%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EE EE EEE E E EE E EET S
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKS 34
Score = 29.4 bits (66), Expect = 5.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 472 EEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EE + EE EEE E EE E T +
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEK 33
Score = 29.0 bits (65), Expect = 7.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E+ + +EE +++E EE EE EE E+ E E E +
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERAD 44
Score = 28.6 bits (64), Expect = 7.7
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 452 TSDEEYDSSEEEEEEEEDEEE--EEEEEEEEEEEEEEEGEEEETE 494
S+E + EEE E + EE EE EE E+ E E E E
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADE 45
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 35.7 bits (82), Expect = 0.10
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EE +SS++E E+EE+ + +E +EEE+E++ EEE A
Sbjct: 252 EEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAK 294
Score = 35.7 bits (82), Expect = 0.13
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ N + ++ + S ++ EEE + +E +EEE+E++ +EEE +
Sbjct: 233 LKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL 292
Query: 490 EEETETASS 498
+E E S
Sbjct: 293 AKEEEELKS 301
Score = 33.4 bits (76), Expect = 0.62
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
N A + ++ E+E+EE+ EEEEE + +EE
Sbjct: 917 ENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELG 974
Score = 32.2 bits (73), Expect = 1.3
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE-------EEEEEEEEEGEEEETETA 496
E + D ++E D+ EEEEE + +EE E EE+EE ++E +
Sbjct: 940 ELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKE 999
Query: 497 SSSTAKNDPQMVTVPIT 513
K + + T
Sbjct: 1000 RLEEEKKELLREIIEET 1016
Score = 32.2 bits (73), Expect = 1.5
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++E +EE EE E E +E E + E EEEEEE+ E+ + +
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEK 368
Score = 31.9 bits (72), Expect = 1.5
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E EE +EE E EEE+ E+EE+ +EEE EE E
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 842
Score = 31.9 bits (72), Expect = 1.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E D + +E + E ++E E EEE + +E +EEE+E + +E E + +
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Score = 31.9 bits (72), Expect = 1.7
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ + +E + E EEEEE++ E+ +E+ E+ EEE ++ E+E SS+ + ++
Sbjct: 339 EELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 398
Score = 31.9 bits (72), Expect = 1.7
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE + +E +E+ ++ E + +E+ EEE
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLY 229
Score = 31.9 bits (72), Expect = 1.7
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 431 NHNRRWNARNGDSEYE-DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
D + E +S ++E + + +E ++EE+E++ +EEE + +E E
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 490 EEETE 494
E ++E
Sbjct: 298 ELKSE 302
Score = 31.9 bits (72), Expect = 1.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEE EE E +EE++ E+ EEE E EEE T+
Sbjct: 832 KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 870
Score = 31.5 bits (71), Expect = 2.3
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE + E + +E+ ++ E + + + E E
Sbjct: 190 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Score = 31.5 bits (71), Expect = 2.4
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEE------DEEEEEEEEEEEEEEEEEEGEEEET 493
+ E E+ +E E+E++ +E +EEEE + E + E + +EE+
Sbjct: 258 KQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 317
Query: 494 ETASSSTAKND 504
+ + K +
Sbjct: 318 KESEKELKKLE 328
Score = 31.5 bits (71), Expect = 2.5
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ + E E+E +E E + E EEEEEE+ E+ + + E+ E + K
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKK 381
Score = 31.1 bits (70), Expect = 3.3
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+++ EEEEE+ ++EEEEEE+ E +E+E EEE +T
Sbjct: 742 LEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKT 784
Score = 30.7 bits (69), Expect = 4.1
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ N + + + +EE + S ++EEEE+E+ E +E+E EEEE+ E+ + E
Sbjct: 733 DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVE 790
Score = 30.3 bits (68), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EEEE+ E + EEE+EE+ + +EEE EE + + +
Sbjct: 778 AEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEE 821
Score = 29.9 bits (67), Expect = 6.1
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++E ++ EE E E + EE + E + E
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKE 205
Score = 29.9 bits (67), Expect = 7.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE--EEEEEEEEGEEEETETAS 497
+ E E S +EE + SE +E+E EEEE+ E+ EEE+EE+ +EE A
Sbjct: 748 EKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRAL 807
Query: 498 SSTAK 502
K
Sbjct: 808 EEELK 812
Score = 29.9 bits (67), Expect = 7.3
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ E EE + +E + +E+ ++ E + +E+ E EE
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLL 228
Score = 29.6 bits (66), Expect = 8.2
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ + ++ EE E+ E + EE + +E + E+ +
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAK 208
Score = 29.6 bits (66), Expect = 9.5
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ E E+ + + +E +EE + E EE+EE + E ++
Sbjct: 943 LEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERL 1001
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 35.4 bits (82), Expect = 0.11
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ EE +EEE++EE++ ++ EE + EE A +
Sbjct: 65 IDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLEQ 105
Score = 34.3 bits (79), Expect = 0.29
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
D +S EEE++EED+ ++ EE + EE A +
Sbjct: 65 IDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLEQ 105
Score = 33.9 bits (78), Expect = 0.39
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
++++ + EE DEEE++EE++ ++ EE ++ EE
Sbjct: 61 EAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 32.3 bits (74), Expect = 1.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE +E + EE +EEE++EE++ + EE +
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKD 90
Score = 31.9 bits (73), Expect = 1.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ E EE +EE+++EE++ ++ EE ++ E
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVE 93
Score = 31.6 bits (72), Expect = 1.6
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+S EE +E + + EE +EEE++EE++ ++ E
Sbjct: 52 ESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENK 89
Score = 31.6 bits (72), Expect = 2.0
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E + + EE +EEE++EE++ ++ E ++T
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTV 92
Score = 31.2 bits (71), Expect = 2.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+ + S+EEE++EED+ ++ EE ++ EE
Sbjct: 62 AAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 31.2 bits (71), Expect = 2.7
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++E + + EE +EEE++EE++ ++ E ++ E
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVE 93
Score = 30.8 bits (70), Expect = 2.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E + D EE +EEE++EE++ ++ EE +
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTV 92
Score = 30.8 bits (70), Expect = 3.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ E + + +E +EEE++EE++ ++ EE ++ E
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 30.4 bits (69), Expect = 3.7
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
E E EE++EE+++++ EE ++ EE
Sbjct: 57 EIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 29.6 bits (67), Expect = 7.6
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D +EE EE +E + + EE +EEE++ E++ ++ +
Sbjct: 48 DLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKD 90
Score = 29.6 bits (67), Expect = 8.0
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ ++ +EEE++E+++ ++ EE ++ EE
Sbjct: 63 AKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 35.6 bits (82), Expect = 0.11
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
SE E+S+ D S E DS E + + + +E EE E + E E
Sbjct: 649 SEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEH 699
Score = 34.5 bits (79), Expect = 0.29
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEE---EEEEGEEEETETASSSTAKND 264
SE E+S+ D S E DS E + + + E EE E + + K
Sbjct: 649 SEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEI 703
Score = 33.3 bits (76), Expect = 0.58
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE----------EEEEEEEEEEEG 488
S + + D +D SEE+ EEE++ + EE E E
Sbjct: 690 NKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLL 749
Query: 489 EEEETETASSSTAKNDPQMVT 509
E+ + A K VT
Sbjct: 750 AEQNSLKAQKQQQKRIAAEVT 770
Score = 32.6 bits (74), Expect = 1.1
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 454 DEEYDSSEEEEEEEEDEE----EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E +S E E +E E+ E EE+ EEE++ ++ + E S + +
Sbjct: 688 AENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEAL 744
Score = 29.9 bits (67), Expect = 6.6
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
SE + S E E E+ DE EE+ EEE + D
Sbjct: 684 SEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQD 735
Score = 29.9 bits (67), Expect = 7.0
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 199 IAKHLGIIKSSNGDSEYEDSDFD---TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
+ ++S +SE + S + S + + DE EE E + E E
Sbjct: 640 NPMEVEPMESEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEH 699
Query: 256 AS 257
Sbjct: 700 RK 701
Score = 29.9 bits (67), Expect = 7.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ Y EEE+ EEE E+E EE +++ +EE
Sbjct: 137 QQVPRPQDLYVLPPLPEEEKHSSEEESEKEWEERMNQKQALQEEF 181
Score = 29.9 bits (67), Expect = 7.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDS--SEEEEEEEDEEEEEEEEEGEEEETETAS 257
A++ E ED FD S+E+ EEE++ +D + E ++ EE E A+
Sbjct: 688 AENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEAN 747
Query: 258 SSTAKNDPQM 267
+N +
Sbjct: 748 LLAEQNSLKA 757
Score = 29.5 bits (66), Expect = 8.7
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE----EEEEEEGEEEET 493
+ S +E + +E EE++ EEE++ + E ++ EE E
Sbjct: 684 SEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEA 743
Query: 494 ETASSSTAKNDPQM 507
A+ +N +
Sbjct: 744 LEANLLAEQNSLKA 757
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 35.5 bits (82), Expect = 0.11
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
F+ Y E E+EEE+E+E+++++ ++E+E+E+G E A+SS + D
Sbjct: 123 QFEDDITRYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVD 178
Score = 33.6 bits (77), Expect = 0.51
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 422 YNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
N++ + R + E ED D D D+ D +E+E+ EE E
Sbjct: 120 NNKQFEDDITRYREDPESEDEEEEEDEDDD--DDGSDDEDEDEDGVGATEEVAASSESGV 177
Query: 482 EEEEEEGEEEETETASSSTAKNDPQM 507
+ +E+ EE+E S +P+M
Sbjct: 178 DRVKEDDEEDEDADLSKKDVLEEPKM 203
Score = 30.5 bits (69), Expect = 3.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
F+ Y E E+EE+EE+E+++++G ++E E A
Sbjct: 123 QFEDDITRYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGA 165
Score = 29.8 bits (67), Expect = 7.6
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 214 EYED--SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
++ED + + E SE+EEEEEDE+++++ + E+E+ + ++
Sbjct: 123 QFEDDITRYREDPE----SEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAAS 172
>gnl|CDD|234638 PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase;
Provisional.
Length = 344
Score = 35.1 bits (82), Expect = 0.11
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 678 LIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGF 715
++I+ I++ +L++ L N G IGF
Sbjct: 62 ILILLAIVISTLLWADLSNPYVW-LVLLVTLGFGLIGF 98
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 32.9 bits (76), Expect = 0.12
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E E EEDE E EEE++++E+EEEE E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 32.2 bits (74), Expect = 0.23
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E EE+E E EEE++++E+EEEE E
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 32.2 bits (74), Expect = 0.23
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEE 486
E E EE++ E EEE++++E+EEEE
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEE 42
Score = 31.4 bits (72), Expect = 0.36
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E EE+E E EEE++++E EEEE E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYE 44
Score = 31.4 bits (72), Expect = 0.46
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E E++E E EEE++++E+EEE E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 31.0 bits (71), Expect = 0.57
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE+E E +EE++++E+EEEE E E+ E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 29.9 bits (68), Expect = 1.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEE----EEEEEE 487
E + E E EEED+++E+EEEE E E++E
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 29.9 bits (68), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
E EE+E E EEE++++E+ EEE AS
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLAS 48
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETET 495
E E EE+E E EEE++ +E+E E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEE 42
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E + EE+E E EEE++++E+ EEE AS
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLAS 48
Score = 29.5 bits (67), Expect = 2.0
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E E +E+E E EEE++++E+EE E E +
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLAS 48
Score = 28.3 bits (64), Expect = 4.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
++E EEE++++EDEEEE E E++E
Sbjct: 23 EDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 27.9 bits (63), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEE 251
E + E E EE+++++E+EEE E
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYEL 45
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 34.6 bits (80), Expect = 0.12
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D E EE+EE E E+ E EEGEE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWV 240
Score = 32.7 bits (75), Expect = 0.55
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE EE+EE E E+ E E EE A
Sbjct: 208 EEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAA 243
Score = 32.3 bits (74), Expect = 0.83
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ EE EE+EE E E+ E E A N+
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 32.0 bits (73), Expect = 1.1
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE + EE E E+ E EE EE
Sbjct: 208 EEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 31.2 bits (71), Expect = 1.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ EE E++EE E E+ E EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGE 237
Score = 30.8 bits (70), Expect = 2.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ EE EE++E E E+ E EE E A+
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAA 242
Score = 30.8 bits (70), Expect = 2.2
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ EE +E+EE E E+ E E + A N+
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 35.4 bits (82), Expect = 0.12
Identities = 12/57 (21%), Positives = 19/57 (33%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E D + + EE E E E E + E E + + + + VP
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVP 1007
Score = 33.1 bits (76), Expect = 0.76
Identities = 17/71 (23%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 446 EDSDFDTSDEEYDSSEEE---EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E D EE + E E E + E E E E E A A
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
Query: 503 NDPQMVTVPIT 513
+ T P+T
Sbjct: 1011 VEHNHATAPMT 1021
Score = 31.5 bits (72), Expect = 2.1
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDE-EYDSSEEEEEEEEDEEEEEEEEEEEE 481
R NRR + E + ++ E +++E+++ E + +E+
Sbjct: 629 RREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKR 688
Query: 482 EEEEEEGEEEETETASSSTAKNDPQMVTVP 511
+ ++E E + T + + P
Sbjct: 689 QAQQEAKALNVEEQSVQETEQEERVQQVQP 718
Score = 29.2 bits (66), Expect = 9.8
Identities = 14/72 (19%), Positives = 26/72 (36%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
R R+ N R+ + + D T E ++ EE +++ E E ++
Sbjct: 599 KPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQ 658
Query: 483 EEEEEGEEEETE 494
E E + E
Sbjct: 659 AEVTEKARTQDE 670
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 33.0 bits (75), Expect = 0.13
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEG 488
E E+ EE +EEEEEEE+E+ G
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFG 101
Score = 31.8 bits (72), Expect = 0.32
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++ E E EE +EEEEEEE+E+ G
Sbjct: 73 ATAAATAEPAEKAEEAKEEEEEEEDEDFGFG 103
Score = 28.8 bits (64), Expect = 4.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEE 492
E E+ EE +EEEEEE +E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 28.8 bits (64), Expect = 4.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEE 491
E E+ EE +EEEEEEE E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 28.4 bits (63), Expect = 4.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 229 SSEEEEEEEDEEEEEEEEEG 248
+ + EE +E+EEEEE+E+ G
Sbjct: 82 AEKAEEAKEEEEEEEDEDFG 101
Score = 28.0 bits (62), Expect = 8.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEE 476
+ E EE +EEE+EEE+E+
Sbjct: 77 ATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 27.6 bits (61), Expect = 9.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEE 252
++ E E+ +E +EEEEEE +E+
Sbjct: 77 ATAEPAEKAEEAKEEEEEEEDEDF 100
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 34.3 bits (78), Expect = 0.13
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 439 RNGDSEYEDSDFDTSDE----EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+N E + D D E + + E E++ ED EE E++ EE E+EEE EE++ +
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPK 66
Score = 34.3 bits (78), Expect = 0.15
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
R++ A RR + D E EE + E+ EE E++ EE E+EEE E
Sbjct: 6 RKNKAKEPKRR----DIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENE 61
Query: 485 EEEGEEE 491
E++ +EE
Sbjct: 62 EQKPKEE 68
Score = 31.6 bits (71), Expect = 1.00
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ E ++ E+ E+ E++ EE E+EEE EE+ +EE +
Sbjct: 29 KEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYP 72
Score = 30.1 bits (67), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ EE E+ EE E+EEE EE++ +E + + S KN
Sbjct: 41 DIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKN 83
Score = 29.7 bits (66), Expect = 4.5
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
+ D E E+ +++ EE E++ E+ EE E+ EE E + + + + PI
Sbjct: 16 RDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPI 73
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 35.2 bits (82), Expect = 0.13
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ F + +E EE E E +EE EE E +E E E E + +
Sbjct: 374 EEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEG 433
Query: 507 M 507
+
Sbjct: 434 L 434
Score = 30.2 bits (69), Expect = 4.6
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E D +T +E E +E E E +EE+ ++ E + E + K
Sbjct: 395 EGFDEETVEEL---RERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTL 450
Score = 30.2 bits (69), Expect = 5.0
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E + + DEE + EE E ++ E E +EE+ ++ E + A+
Sbjct: 390 ELLEIEGFDEE--TVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKG 446
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 33.0 bits (74), Expect = 0.14
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ + E + + E D + E+ E EDE++ E+ E E+E++ E+ E+E E S
Sbjct: 47 SNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSD 106
Query: 500 TA 501
+
Sbjct: 107 AS 108
Score = 33.0 bits (74), Expect = 0.15
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+E+ E+ E E+E + E+ E E+E++ E+ E +E+E E + +S K
Sbjct: 63 NEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 31.5 bits (70), Expect = 0.47
Identities = 13/60 (21%), Positives = 36/60 (60%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
D F ++++E ++ E ++E ++E++ E+ E E+E++ E+ E E+ + +++ +
Sbjct: 42 DKIFISNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 31.1 bits (69), Expect = 0.69
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++Y+ DE + E ++E EDE++ E+ E E+E++ E+ E+E +
Sbjct: 39 NKYDKIFISNEDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKK 90
Score = 30.4 bits (67), Expect = 1.4
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+++E + E E+E+ E+ E E+E++ E+ E E E+E ++ +S K
Sbjct: 63 NEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKKK 112
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ E++ E+ E+E+E++ E+ E E+E++ E E E E + +D +
Sbjct: 63 NEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKKK 112
Score = 29.6 bits (65), Expect = 2.4
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ + T+ E E+E++ E E E+E++ E+ E E+E+ E+ +D
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSD 106
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 33.9 bits (78), Expect = 0.14
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE + +E EE E + EE E+E G +E+ ET S AK+D
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 31.6 bits (72), Expect = 0.79
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EE+E E EE EE E + E K D +
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEET 49
Score = 30.5 bits (69), Expect = 2.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+EEY++ EE EE E + EE E+E E+EET
Sbjct: 6 VFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEET 49
Score = 28.9 bits (65), Expect = 7.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
S E E+ + + + EE E + EE E+E G+E+E ET S AK+D
Sbjct: 2 DSQFVFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDE-ETDESEKAKSD 58
Score = 28.5 bits (64), Expect = 7.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EYE + EE + E + EE ++E +E+EE +E E+ +++T
Sbjct: 12 EYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKT 61
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 35.0 bits (80), Expect = 0.14
Identities = 14/71 (19%), Positives = 25/71 (35%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
W+ + E ++ + E + +EE+ E E+ EE ++ G E
Sbjct: 339 PGWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFA 398
Query: 494 ETASSSTAKND 504
A K D
Sbjct: 399 PAAVEVAPKED 409
Score = 30.0 bits (67), Expect = 5.2
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
++E + +E+Y E E+ +E ++ G E A K D
Sbjct: 359 QFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKED 409
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 33.4 bits (77), Expect = 0.14
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E SE E+ + EE+ E E E+ E+E EE E E + AK
Sbjct: 29 EEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
Score = 32.2 bits (74), Expect = 0.28
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
S EE+ E E E+ E+E EE E E E + E + S
Sbjct: 42 SAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLS 79
Score = 32.2 bits (74), Expect = 0.30
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D + D + + + E+++EE+ E E+ + EE+ E E E+ E E
Sbjct: 8 FTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKE 57
Score = 32.2 bits (74), Expect = 0.32
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E ++ EE+ + E E+ E+E EE E E E + E + K
Sbjct: 33 SEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
Score = 31.1 bits (71), Expect = 0.72
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE S E+ + EE+ E E E+ E+E EE E + K
Sbjct: 29 EEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
Score = 30.7 bits (70), Expect = 0.94
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 454 DEEYDSSEEEEEEE----EDEEEEEEEEEEEEEEEEEEGEEEETE 494
+++ + + E E+ +E+ E E E+ E+E EE E E E
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 29.9 bits (68), Expect = 1.9
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEE-----EEEEEEEEEEGEEEETE 494
D+ + + E++++E++ E E+ EE+ E E E E+E E
Sbjct: 14 DKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELE 59
>gnl|CDD|222477 pfam13965, SID-1_RNA_chan, dsRNA-gated channel SID-1. This is a
family of proteins that are transmembrane dsRNA-gated
channels. They passively transport dsRNA into cells and
do not act as ATP-dependent pumps. They are required for
systemic RNA interference.
Length = 567
Score = 35.1 bits (81), Expect = 0.14
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 25/125 (20%)
Query: 167 IALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEE 226
L S LLF + + + N + + II SE D E
Sbjct: 124 FFLLSFCLLF----IVFVIH-----IFRNRRDLRSR-DIISFEPSPSEQRAMDLQPDQSE 173
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP------------QMVTVPITL 274
DSS E E D +++ E+ S ++ D Q++T+ +
Sbjct: 174 EDSS---ERENDILMADQQIMVIREKASLYVSDLSRKDQRPLKQDSLSYLWQILTIAVFY 230
Query: 275 CLMIM 279
L ++
Sbjct: 231 ILPVL 235
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 34.9 bits (80), Expect = 0.15
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
D E ++ + EY + ++ + E E+E E+E EEE EE E E+
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGE 285
Score = 32.6 bits (74), Expect = 0.67
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ D + E E EDE E+E EEE EE+E E+ EE
Sbjct: 251 KGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 31.4 bits (71), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
N E ++ + ++ E E E++ E+E EEE GEE+E E
Sbjct: 237 NEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDK 283
Score = 31.0 bits (70), Expect = 2.4
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
D E ++ + EY + ++ +E E E+E E E EE +
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 29.5 bits (66), Expect = 6.9
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D+ + E E+E EDE EEE EE+E E++ EE
Sbjct: 251 KGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 32.3 bits (74), Expect = 0.16
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E++EE EED+EE E ++EEE E+
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 31.5 bits (72), Expect = 0.27
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D++D Y + E ++ E++EE EE++EE E + EEE E
Sbjct: 35 DSTDLYYRTDYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDV 80
Score = 30.7 bits (70), Expect = 0.58
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ +E++E+ EE++EE E ++EEE E+ + +A
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSA 85
Score = 30.4 bits (69), Expect = 0.83
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
D +E++EE E+++EE E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETA 256
+ ++EE EED+EE E + EEE E
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDV 80
Score = 28.8 bits (65), Expect = 2.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D+ + EE EE++E+ E ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 35.4 bits (82), Expect = 0.16
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
R AR + E + + T ++EY E +E +E+ + +E+ + E+E E G++EE
Sbjct: 808 SRIEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
Query: 494 ET 495
E
Sbjct: 867 EE 868
Score = 32.7 bits (75), Expect = 0.96
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 421 AYNRRRSSAMNH-NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE 479
R + + ++ N + EY + + E+ +E+ + E E E ++E
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
Query: 480 EEEEEEEEGEEEETE 494
E EEE EE E +
Sbjct: 865 ELEEELEELEAALRD 879
Score = 30.4 bits (69), Expect = 5.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE-EEEGEEE 491
+ A E + + +EE + EE E E EE E+ EE ++ ++ GEEE
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEE 288
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 34.8 bits (81), Expect = 0.16
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
EEE E E E E E +++ A P +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKAS 128
Score = 33.6 bits (78), Expect = 0.38
Identities = 9/50 (18%), Positives = 12/50 (24%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
EEE E E E E E A+++
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 31.7 bits (73), Expect = 1.5
Identities = 10/50 (20%), Positives = 13/50 (26%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITL 514
EEE + E E E E A++ A P
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 31.7 bits (73), Expect = 1.6
Identities = 9/51 (17%), Positives = 11/51 (21%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E E E E E E A++ A P
Sbjct: 79 EGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASP 129
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 32.0 bits (73), Expect = 0.16
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ E + E E + +E+E E E EGEEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.5 bits (64), Expect = 2.6
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ E + + E + +E+E E E EEE
Sbjct: 20 TDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+D + +++E + +EDE E E EGEEE
Sbjct: 20 TDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ E E E + DE+E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|152814 pfam12379, DUF3655, Protein of unknown function (DUF3655). This
domain family is found in viruses, and is approximately
70 amino acids in length. The family is found in
association with pfam08716, pfam01661, pfam05409,
pfam06471, pfam08717, pfam06478, pfam09401, pfam06460,
pfam08715, pfam08710.
Length = 70
Score = 31.9 bits (72), Expect = 0.17
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
Y S +EEE+ EE E EEEE EE E E G E++
Sbjct: 2 YCSFYPPDEEEDCEEYECEEEEIEETCEHEYGTEDD 37
Score = 29.2 bits (65), Expect = 1.5
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
F DEE D E E EEE+ EE E E G E++
Sbjct: 5 FYPPDEEEDCEEYECEEEEIEETCEHEYGTEDD 37
Score = 28.1 bits (62), Expect = 3.5
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE------------------EEEEEEGEEE 491
F DEE D E E EEEE EE E E E+ EEEEEE +
Sbjct: 5 FYPPDEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEEDWLD 64
Query: 492 ETETAS 497
+ AS
Sbjct: 65 DATEAS 70
Score = 28.1 bits (62), Expect = 3.8
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETET 255
Y EEE+ EE E EEEE EE E E T
Sbjct: 6 YPPDEEEDCEEYECEEEEIEETCEHEYGT 34
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 32.4 bits (74), Expect = 0.17
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EDE E +E +E+ E EEE E E+EE E
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 32.4 bits (74), Expect = 0.18
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+E E +E +E+ E EEE E+E EEEE +
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 32.4 bits (74), Expect = 0.18
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
D +E +E +E+ E EEE E+E+EEEE++
Sbjct: 65 EDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.6 bits (72), Expect = 0.29
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+E + +E +E+ E EEE E+E+ EEE+
Sbjct: 59 GVPNAIEDETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 31.6 bits (72), Expect = 0.30
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E E +E +++ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.8 bits (70), Expect = 0.59
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+E E +E +E+ E EEE E+E+E EE++
Sbjct: 60 VPNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.1 bits (68), Expect = 0.98
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
++ E+E E +E +E+ E EEE E+E+EEEE +
Sbjct: 62 NAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+S + E +E +E E EEE E+E+EEEE++
Sbjct: 54 ESGLWGVPNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 28.9 bits (65), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D +E +E +E E EEE E+ +EEE +
Sbjct: 65 EDETEFKELQEQYEVEEEAEKEDEEEED 92
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 32.2 bits (73), Expect = 0.18
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 166 RIALCSLYLLFGIALLAMSFNLVQ--EEVISNVKAIAKHL--GIIKSSNGDSE-YEDSDF 220
RI + YL F + ++ V+ ++ +SN+ +L G S NG + YED
Sbjct: 3 RILSVTFYLFFIYLYIYKTYGKVKNTDKELSNIYGTKYYLRSGFFNSKNGKGQKYEDLQE 62
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+ E D + EE + +EE EG+ E
Sbjct: 63 EGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 31.1 bits (70), Expect = 0.53
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE--EGEEE 491
++Y+ +EE E E D+EE+ EE +EE EG+ E
Sbjct: 55 QKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 34.9 bits (81), Expect = 0.18
Identities = 13/54 (24%), Positives = 17/54 (31%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
F+ D +S EEE + EEE E E E + N
Sbjct: 112 FEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNGLVLDLLRSSN 165
Score = 32.9 bits (76), Expect = 0.68
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
F+ D +S EEE + EEE E G E
Sbjct: 112 FEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNGLVL 158
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 32.3 bits (74), Expect = 0.18
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEG 488
E + E E +EEEE+ EE E ++ EG
Sbjct: 9 EGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 31.9 bits (73), Expect = 0.29
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ +E + + E E +EEEE+ EEGE ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPE 34
Score = 30.4 bits (69), Expect = 0.85
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+E + E E EEEE+ EE E ++ E
Sbjct: 5 CKENEGKPESEPKEEEEKRPLEEGEGKKPEGN 36
Score = 30.0 bits (68), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
E E E + E + +EEEE+ EE E ++
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 28.9 bits (65), Expect = 3.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E E + E E +EEEE+ EE E + E
Sbjct: 7 ENEGKPESEPKEEEEKRPLEEGEGKKPEGN 36
Score = 28.5 bits (64), Expect = 4.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ E E + E E +EEEE+ EE E +
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKP 33
Score = 28.5 bits (64), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E E + E E +EEEE+ EE E ++ E
Sbjct: 7 ENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.1 bits (80), Expect = 0.19
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ + EE++++ EE ++ EE+E++ E + E EE + A
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Score = 34.3 bits (78), Expect = 0.30
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 455 EEYDSSEEE-----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EE +EEE EE + EE++++ EE ++ EE+E + E + AK ++
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEEL 1707
Score = 34.3 bits (78), Expect = 0.35
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 181 LAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEE 240
+A S N+ EE A KH + NG+ +++DF+ E D E++EEE +E
Sbjct: 1835 VADSKNMQLEEA----DAFEKHKFNKNNENGEDGNKEADFNK---EKDLKEDDEEEIEEA 1887
Query: 241 EEEEEEEGEEEETETASSSTAKND 264
+E E+ + ++ E E +++ A +
Sbjct: 1888 DEIEKIDKDDIEREIPNNNMAGKN 1911
Score = 34.0 bits (77), Expect = 0.45
Identities = 11/65 (16%), Positives = 30/65 (46%)
Query: 426 RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ + + D +++ + + +DE + + + EE + E + EE + EE +
Sbjct: 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK 1121
Query: 486 EEGEE 490
++ E+
Sbjct: 1122 KKAED 1126
Score = 33.6 bits (76), Expect = 0.52
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE + + EE ++ EE++++ EE ++ EE+E+ E + + K
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 33.6 bits (76), Expect = 0.56
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++EE EE ++ +E++++ EE ++ EE+E++ E + A
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
Score = 33.2 bits (75), Expect = 0.66
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 421 AYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
A ++++ + N E + ++ D E EE+E++ E ++E EE +
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Query: 481 EEEEEEEGEEEETETA 496
+ EE ++ E EE + A
Sbjct: 1703 KAEELKKKEAEEKKKA 1718
Score = 32.8 bits (74), Expect = 0.98
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 454 DEEYDSSEE---EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE +EE EEE + + EE ++E EE++++ EE +++E E
Sbjct: 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
Score = 31.6 bits (71), Expect = 1.9
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ E EE+++ +E ++ EEE + + EE + EE+ + A
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
Score = 31.6 bits (71), Expect = 2.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE E EE+++ +E ++ EEE + + EE ++ EE+ + A
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
Score = 31.6 bits (71), Expect = 2.3
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 446 EDSDFDTSDEEYDSSEEE----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E+ + + EE +EE+ EE ++ EE+E++ E ++E EE + EE + +
Sbjct: 1656 EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Query: 502 KNDPQM 507
K ++
Sbjct: 1716 KKAEEL 1721
Score = 31.3 bits (70), Expect = 2.7
Identities = 14/69 (20%), Positives = 32/69 (46%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ + E + + E + + EE ++ +EE + + EE ++ EE++ + EE + A
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 499 STAKNDPQM 507
K +
Sbjct: 1686 DEKKAAEAL 1694
Score = 31.3 bits (70), Expect = 3.0
Identities = 15/42 (35%), Positives = 29/42 (69%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EE +EEE + + +E ++E EE++++ EE ++ EEE+ + A
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
Score = 31.3 bits (70), Expect = 3.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 454 DEEYDSSEE----EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE +EE E EE++ EE ++ EEE + + EE +E E + + AK D
Sbjct: 1698 AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
Score = 30.9 bits (69), Expect = 3.6
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 431 NHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
NH + A+ + E D ++D+ E+ +E EE + EE ++ E + E
Sbjct: 1055 NHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEA 1114
Query: 491 EETETA 496
+ E A
Sbjct: 1115 RKAEEA 1120
Score = 30.9 bits (69), Expect = 4.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEE-----------EEEEEGEEEETETA 496
++E+ +EE ++ EEDE++ E ++E E E EE+ + EE + A
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA 1724
Score = 30.5 bits (68), Expect = 4.5
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ EE + + EE ++ EEE+++ E+ ++ E EE + A
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Score = 30.1 bits (67), Expect = 6.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + ++ D +E EE ++ EE +++E EE+++ EE + EEE
Sbjct: 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEE 1727
Score = 30.1 bits (67), Expect = 6.9
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEE----------EEEEEEEEEEEGEEEETET 495
+ D ++E + E+E++ E ++E EE E EE+++ EE + EE
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Query: 496 ASSSTAKNDPQ 506
+ AK + +
Sbjct: 1730 IKAEEAKKEAE 1740
Score = 29.3 bits (65), Expect = 9.5
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 413 KTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE 472
K + D+ + H N NG+ +++DF + E+ ++EEE EE +E
Sbjct: 1833 KEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADF--NKEKDLKEDDEEEIEEADEI 1890
Query: 473 EEEEEEEEEEE 483
E+ ++++ E E
Sbjct: 1891 EKIDKDDIERE 1901
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 34.6 bits (80), Expect = 0.19
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 543 YFCFISLSTIGFGDIVP 559
YF +++ST+G+GDIVP
Sbjct: 174 YFSIVTMSTVGYGDIVP 190
Score = 33.1 bits (76), Expect = 0.53
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 13/70 (18%)
Query: 133 YFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEV 192
YF +T++T+G+GD VP + R+ S+ +L GI + A S + + V
Sbjct: 174 YFSIVTMSTVGYGDIVP-----------VSESARLFTISVIIL-GITVFATSISAIFGPV 221
Query: 193 IS-NVKAIAK 201
I N+K + K
Sbjct: 222 IRGNLKRLVK 231
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 34.7 bits (80), Expect = 0.19
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 21/106 (19%)
Query: 330 LAFLFSNIGIICLVIGYTIAGYG---NVAP-ITFLGK------ITTIAYAIAGMPLFLLY 379
LA SN+ + L G+ I G G N P +T LGK A+AG P+FL
Sbjct: 100 LASFSSNVIELYLTAGF-ITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLST 158
Query: 380 LSNIGDILAKSFKW---------IYAKCCLCRGCPTRPRDLQKTIQ 416
L+ + L +SF W + CC+C G RP + +
Sbjct: 159 LAPLNQYLFESFGWRGSFLILGGLLLHCCVC-GALMRPVGPSQRVS 203
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 32.9 bits (75), Expect = 0.19
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
EE + EEEEEE +E + E EE E S A +DP
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDP 80
Score = 32.5 bits (74), Expect = 0.25
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EE + EEEEEE +E + E EE E E A D
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGD 84
Score = 31.0 bits (70), Expect = 0.94
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
Y S F+ + + + EEEEEE +E + E EE E E A D
Sbjct: 36 YPRSYFEETTPDAAA-EEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGD 84
Score = 30.6 bits (69), Expect = 1.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
Y S F+ + + + EEEEEE E + E EE E E+ + +
Sbjct: 36 YPRSYFEETTPDAAA-EEEEEEVVKEVDAENEEVEVVSLEDADDD 79
Score = 28.7 bits (64), Expect = 6.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE--EGEEEETETASS 498
Y + E+EEEE +E + E EE E E+ + +
Sbjct: 38 RSYFEETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGG 83
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 34.8 bits (80), Expect = 0.20
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
T E + + E EEE +E ++ + ++GEE +
Sbjct: 264 TRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304
Score = 32.5 bits (74), Expect = 0.90
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E E EE+ +E ++ + ++ EE ++ EE
Sbjct: 278 PPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 30.5 bits (69), Expect = 3.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EEE +E D+ + ++ EE ++ EE + E
Sbjct: 286 EEEPDEPDQTDPDDGEETDQIPEELMFDAVEA 317
Score = 30.5 bits (69), Expect = 4.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E EEE +E + + ++ EE ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 30.5 bits (69), Expect = 4.5
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E + E E EEE +E ++ + ++ E
Sbjct: 270 EPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 32.4 bits (74), Expect = 0.21
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
D E E++ + ++ EE E E+ EEE E+ +E EE E EEE E +
Sbjct: 20 DEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAE 79
Query: 502 KN 503
K
Sbjct: 80 KE 81
Score = 31.2 bits (71), Expect = 0.58
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+DEE + ++EE E+ E EE E EE EEE E +E
Sbjct: 19 ADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQE 58
Score = 30.5 bits (69), Expect = 1.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 453 SDEEYDSSEEEEEEEEDE--EEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+ E + +EEE E+ E EE EE EEE EE E E+E + S + +
Sbjct: 41 AREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAEGKVVEAA 98
Score = 29.7 bits (67), Expect = 1.9
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E + EE EE +E+ E+ +E EE E EE EEE
Sbjct: 16 EISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEE 51
Score = 28.5 bits (64), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E +E +EE +E +EE E+ +E EE EE E + A
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLA 56
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 32.6 bits (75), Expect = 0.21
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEG 248
EEYD EEEE+EE E+E E +E+G
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDG 51
Score = 31.5 bits (72), Expect = 0.53
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 5/43 (11%)
Query: 455 EEYDSS---EEEEEEEEDE--EEEEEEEEEEEEEEEEEGEEEE 492
EEY++S E + E DE EE ++EEEEE+EE+E+E E +E
Sbjct: 7 EEYNASIPDPAELQSEIDEYMEEYDKEEEEEKEEKEKEAEPDE 49
Score = 30.3 bits (69), Expect = 1.6
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEG 488
EE + EEEEE+EE+E+E E +E+G
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDG 51
Score = 30.3 bits (69), Expect = 1.7
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEE 477
EEYD EEEE+EE+++E E +E+
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDED 50
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 34.6 bits (79), Expect = 0.21
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EE +E+ +D++ + E E E E G E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGE 87
Score = 34.2 bits (78), Expect = 0.26
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ +EE DE+ ++++ + E E E E SS
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGSSRP 92
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 33.1 bits (76), Expect = 0.22
Identities = 5/27 (18%), Positives = 5/27 (18%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E E EE
Sbjct: 129 AAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 32.4 bits (74), Expect = 0.39
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ E E E EEE
Sbjct: 130 AAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 31.6 bits (72), Expect = 0.70
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E + E EEE
Sbjct: 128 KAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 31.6 bits (72), Expect = 0.75
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ E ++ + E E E E +
Sbjct: 118 TAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.8 bits (70), Expect = 1.4
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEE 484
++E E E EEE
Sbjct: 129 AAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia,
this region is processed into peptides of approximately
50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 33.1 bits (75), Expect = 0.22
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 7/95 (7%)
Query: 407 RPRDLQKTIQDTTGAYNRRRSSAMNH-----NRRW--NARNGDSEYEDSDFDTSDEEYDS 459
R D Q+ + + RR+ + +Y++ +E
Sbjct: 51 REEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRP 110
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+++ + E E+ +E E E +EGEEE +E
Sbjct: 111 RRQQQCQRECREQYQEHGRGEGENINQEGEEERSE 145
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 34.7 bits (79), Expect = 0.23
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE EEED + E + E EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 34.3 bits (78), Expect = 0.30
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 390 SFKWIYAKCCLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSD 449
S++WI K R D A R+ R+ +G++ +
Sbjct: 21 SYRWIQRK---------RAEDPLPPWLRKEKACALRQQRRHRLQRQHGVIDGENSETERP 71
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
D + + + EE EEE+++ E + E EEE+EEEE
Sbjct: 72 RDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEE 108
Score = 32.7 bits (74), Expect = 0.79
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 204 GIIKSSNGDSEYE-DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETET 255
G+I N ++E D E + +EEE+ + + + E EEE EEEE E
Sbjct: 59 GVIDGENSETERPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEA 111
Score = 31.2 bits (70), Expect = 2.6
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E E+ EEE+ + E + E EEE EEEE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEA 111
Score = 30.8 bits (69), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
D + + + E EEEDEEEE E + E
Sbjct: 88 EEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 29.6 bits (66), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E EE +EE+ + E + E EEE+E EE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPD 113
Score = 29.6 bits (66), Expect = 7.0
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 438 ARNG-DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
A G ++E ED+D + D E EEEDEEEE E + E + EG
Sbjct: 80 AEAGEEAEEEDNDRECPDTE--------AEEEDEEEEIEAPDPEVNPLDAEG 123
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 34.8 bits (80), Expect = 0.23
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 442 DSEYEDSDFDTSDEEYD----SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
D + ++ DF D+E D +S E +++ E + +E+ + + + + + S
Sbjct: 88 DDDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDS 147
Query: 498 SSTAKNDPQ 506
S++ +
Sbjct: 148 SNSQTDQGL 156
Score = 34.5 bits (79), Expect = 0.26
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 186 NLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSE---EEEEEEDEEEE 242
N++ ++ N K A L KS + D + ++ DF D+E D+ E +D+
Sbjct: 63 NILYNSILCNQKKHASFLNQRKSLDDDDD-DEFDFLYEDDEDDAGNATSGESSTDDDSLL 121
Query: 243 EEEEEGEEEETETASSSTAKND 264
E + E+ +T+ + T D
Sbjct: 122 ELPDRDEDADTQANNDQTNDFD 143
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 32.1 bits (73), Expect = 0.23
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+E+ +EEEE EEEE++EE + E + +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRR 43
Score = 32.1 bits (73), Expect = 0.26
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EED +EEEE EEEE++EE E + + S +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRR 42
Score = 30.9 bits (70), Expect = 0.51
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
S+ EE+ +EE+E EEEE++EE + E + + +
Sbjct: 2 RVSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRT 44
Score = 30.5 bits (69), Expect = 0.73
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
S E D EEEE EEE+++EE + E + + T S
Sbjct: 4 SALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRR 50
Score = 30.5 bits (69), Expect = 0.75
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
+ +EEEE E+EE++EE E + + S +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRR 42
Score = 29.8 bits (67), Expect = 1.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 233 EEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+EEEE EEEE++EE + E + +
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVDRGRRSPRRR 43
Score = 29.8 bits (67), Expect = 1.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E++ +EEEE EEEE++EE + E + +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRT 44
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 33.9 bits (78), Expect = 0.23
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S+ E D DE D +E+ EE E+ EE+ ++ E+EE+ +E E+E
Sbjct: 78 SKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEP 127
Score = 32.4 bits (74), Expect = 0.63
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ + +E+ +E+ EE E+ EE+ ++ E+EE+ + E+E +
Sbjct: 81 EGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDY 129
Score = 30.1 bits (68), Expect = 3.4
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
D E + +ED EE E+ EE+ ++ E+ E+ +
Sbjct: 87 DLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDY 129
Score = 30.1 bits (68), Expect = 4.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
G+ + +F +E + E E+ EE ++ E+EE+ +E E+E +
Sbjct: 81 EGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 29.7 bits (67), Expect = 5.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
S+ E D DE D +E+ EE E+ EE+ + E+E + +
Sbjct: 78 SKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEA 123
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 34.6 bits (80), Expect = 0.24
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+T +E+ + +EE E + E E EE+ E E EEE EE E A
Sbjct: 530 ETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
Score = 33.5 bits (77), Expect = 0.58
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
A N ++E D D +E + EE E E E EE E E+ EE EE EEE
Sbjct: 339 AHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEE 392
Score = 32.3 bits (74), Expect = 1.3
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 443 SEYEDS--DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E+E+ + +T + E + E E E E EE EE + E EE EEE + + +
Sbjct: 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
Score = 30.8 bits (70), Expect = 3.6
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +E E EE+ + EE E E E E EE E E
Sbjct: 519 EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562
Score = 30.4 bits (69), Expect = 4.9
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E ++ D E Y+ E+ E DE +E EE EE EE E E E
Sbjct: 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAE 259
Score = 30.4 bits (69), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ ++ E+ D EE EE +E E E E EE E E+ EE E
Sbjct: 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEE 388
Score = 30.0 bits (68), Expect = 5.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ E E E EE+ + E EEE EE EE E + E
Sbjct: 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER 587
Score = 29.6 bits (67), Expect = 7.1
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 454 DEEYDSSEEEEE--EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E ++ EE+ E EE E E E E EE+ E EEE E A A+
Sbjct: 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
Score = 29.6 bits (67), Expect = 8.7
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE------------------EEEEEEEE 482
++ +D+D + + + E+ +EE D EE ++ EE E
Sbjct: 300 AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
Query: 483 EEEEEGEEEETETASSSTA 501
E EE E E+E + A
Sbjct: 360 ELREEAAELESELEEAREA 378
Score = 29.2 bits (66), Expect = 9.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ +E + EE E + EE+ E EE E E E E E ++ +
Sbjct: 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE 565
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 34.4 bits (79), Expect = 0.24
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 453 SDEEYDSSEEEEEEE----------EDEEEEEEEEEEEEEEEEEEGEEEETE 494
SDEEYD ++ EE ED E EEE E + E + EEEE +
Sbjct: 254 SDEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQATEADFCEEEEAK 305
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 34.0 bits (78), Expect = 0.26
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 461 EEEEEEEEDEE---------EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
EEEEEEEEDE E EE+ ++E+ E+ EE+ T S + + P
Sbjct: 183 EEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSP 236
Score = 33.6 bits (77), Expect = 0.38
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEE---------EEEEEEEEEEEEEGEEEETETA 496
D D ++ E E++EEEEE+EE+E E EE+ ++E+ E++E +
Sbjct: 165 ADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDND 224
Query: 497 SSSTAK 502
++ + K
Sbjct: 225 NTPSPK 230
Score = 33.2 bits (76), Expect = 0.50
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEE-------EEEEEEEEGEEEETET 495
Y++ + +EE+EE E+E EEE E + + E E E
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLER 153
Score = 32.4 bits (74), Expect = 0.91
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ E ++ ++E+EE E+E EEE + ++ E TA S
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREM 148
Score = 32.0 bits (73), Expect = 1.0
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 451 DTSDEEYDSSEEEEEEEED---------EEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E EEEEEE+E E EE+ ++E+ E++E + + T + S ++
Sbjct: 175 ALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSS 234
Query: 502 K 502
Sbjct: 235 S 235
Score = 32.0 bits (73), Expect = 1.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 222 TSDEEYDSSEEEEEEEDEEEEEEEEEG---EEEETETASSSTAK 262
T + E D +EE+EE E+E EEE G ++ E TA S
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREM 148
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 34.6 bits (79), Expect = 0.27
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 432 HNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+++R +R D + +D DF + Y E ++EEE E + E +E++E EGE +
Sbjct: 41 YSQRSYSRFEDED-DDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYEGEYQ 99
Query: 492 ETETASS 498
A +
Sbjct: 100 GIPRAEN 106
Score = 29.9 bits (67), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
S + E +D DF + Y E ++EE+ E + EG +E+ E
Sbjct: 47 SRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDE 92
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 32.7 bits (75), Expect = 0.28
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +E+ ++E E+EE +++ EE++ +EE+T
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTA 84
Score = 31.2 bits (71), Expect = 0.83
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 197 KAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
K K K N E E S +SS+EEEE E++++EE E E+
Sbjct: 94 KQKKKKKKKAKKGNKKEEKEGSKSSE-----ESSDEEEEGEEDKQEEPVEIMEK 142
Score = 30.4 bits (69), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E E E DE+ ++E E+EE +++ EE + ++ E TAK
Sbjct: 48 EYERLELMDEKWKKETEDEEFQQKREEKKRKDEE----KTAKK 86
Score = 29.6 bits (67), Expect = 2.8
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
A+ G+ + E +S+ +SS+EEEE EED++EE E E+
Sbjct: 102 KAKKGNKKEEKEGSKSSE---ESSDEEEEGEEDKQEEPVEIMEK 142
Score = 29.6 bits (67), Expect = 3.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+E + E+ +EEEE EE+++EE E E+
Sbjct: 102 KAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 34.1 bits (78), Expect = 0.29
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E DS+ D +E + +E EE E E+++ + E E +EE+E+ E EE +
Sbjct: 64 NYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 29.8 bits (67), Expect = 5.6
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE----EEEEEEEEEGEEEETETAS 497
E S+++ D E D ++EEE DE EE E+E+ E E +EE E+ E E
Sbjct: 61 EISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
>gnl|CDD|224581 COG1667, COG1667, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 33.7 bits (77), Expect = 0.29
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
N E + S+ + E+Y E EE E +E + EE EE EE
Sbjct: 125 NEMEELKSSEREELLEKYGIRVPEIEEIERILDEAVGSDYFSEEIEEPSREE 176
Score = 29.8 bits (67), Expect = 5.2
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 186 NLVQEEVISNVKAIAKHLGIIKSSNGDSEYE-DSDFDTSDEEYDSSEEEEEEEDEE 240
N ++E S + + + GI E + D + SEE EE EE
Sbjct: 125 NEMEELKSSEREELLEKYGIRV----PEIEEIERILDEAVGSDYFSEEIEEPSREE 176
Score = 29.5 bits (66), Expect = 6.0
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E + E EEE E E EE + E EE E+
Sbjct: 106 ELNKDECVLSVPITEEEVENEMEELKSSEREELLEKYG 143
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 32.7 bits (75), Expect = 0.30
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEE----------EEEEEEEGEEEETETASSSTAKNDPQM 507
D E+ EE+E ++EE+E +EE+E EE E+ E E+ + + +D
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDY 72
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 34.1 bits (78), Expect = 0.30
Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 173 YLLFGIALLAMSFNLVQEEVIS-NVKAIA-KHLGIIKSSNGDSEYEDSDFDTSDEEYDSS 230
YL F I L +S L+ IS K I KHL + S +S E D D D
Sbjct: 500 YLYFAIILFGISCILIL--AISLMTKPIPDKHLYRLCWSLRNSTEERIDLDADDWT---- 553
Query: 231 EEEEEEEDEEEEEEEEEG 248
E+E+E E E +EE ++ G
Sbjct: 554 EDEDENEMETDEERKKPG 571
Score = 33.3 bits (76), Expect = 0.56
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 34/91 (37%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE-------------- 481
W+ RN E D D D + E+EDE E E +EE ++
Sbjct: 535 WSLRNSTEERIDLDAD-----------DWTEDEDENEMETDEERKKPGCCRKAYNWFCGF 583
Query: 482 ---------EEEEEEGEEEETETASSSTAKN 503
EEEE + + T+T+ +N
Sbjct: 584 DQGKAPKLTEEEEAALKMKMTDTSEKPLWRN 614
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 34.1 bits (78), Expect = 0.31
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE 477
RR + + WN + + E DS +E+E E+ E+ E + E
Sbjct: 222 RRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 33.7 bits (77), Expect = 0.41
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE----EEETETASSSTAKND 504
+ + + +E EE E + ++E+E E+ E+ E + E E E S D
Sbjct: 234 NLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSEYIERISEIRKMKD 293
Query: 505 PQM 507
++
Sbjct: 294 ERL 296
Score = 32.2 bits (73), Expect = 1.1
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
RR + N + E D E ++ E + ++E++ E+ E+ E + E
Sbjct: 216 RRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 31.4 bits (71), Expect = 1.8
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG--EEEETETASSSTAKNDPQM 267
+ + E DS +E+E ED E+ E + E E E S D ++
Sbjct: 239 RRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYITSEYIERISEIRKMKDERL 296
Score = 31.0 bits (70), Expect = 2.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ + EE +E+E E+ E + ++E+E E+ E+GE +
Sbjct: 225 AELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETK 272
Score = 30.6 bits (69), Expect = 3.3
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 190 EEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGE 249
EE + V+ + +++ N + E D E ++ E + ++EDE E+ E+
Sbjct: 214 EERRAAVER--RLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGET 271
Query: 250 EEET 253
+ E+
Sbjct: 272 KPES 275
Score = 30.2 bits (68), Expect = 4.7
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE--------EEEEEEEGEEEETETASSS 499
+ + E EE + +E+E EE E+E E+ E+ ET+ S
Sbjct: 218 AAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYI 277
Query: 500 T 500
T
Sbjct: 278 T 278
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 33.0 bits (76), Expect = 0.31
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E E E E + +E +EE +EEE++ EE
Sbjct: 27 ALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 31.5 bits (72), Expect = 1.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+EE ++ E +E + E++ +E +EE +EE ++ E
Sbjct: 21 KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLE 62
Score = 31.5 bits (72), Expect = 1.2
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+EE +E E+ E++ +E +EE +EEE +
Sbjct: 21 KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60
Score = 30.7 bits (70), Expect = 2.1
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEE--------EEEEEEEEEGEEEE 492
EEE E +E E E EE +EEE++ EE
Sbjct: 18 PSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 30.3 bits (69), Expect = 2.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E+ + ++ E E++ +E +EE +EEE++ EE
Sbjct: 22 EEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 29.5 bits (67), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S +EEEEE + +E E E++ +E +EE E
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDE 54
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 33.4 bits (76), Expect = 0.33
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S +E D +E + +ED+ E+ ++ +E E EETE
Sbjct: 119 SKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETE 160
Score = 33.4 bits (76), Expect = 0.34
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 442 DSEYEDSDFDTSDEEYDSS--EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
D E + EE + S EE E+ +++ +E+ E+E E+ +E E+ T
Sbjct: 144 DDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERT 199
Score = 32.6 bits (74), Expect = 0.54
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E S+ D + +SE+E E+ ++ E+ E + E ++ EE +EE S A
Sbjct: 166 EETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKA 223
Score = 32.2 bits (73), Expect = 0.85
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ + E ++EE+ +E + + ++ S +
Sbjct: 107 EQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQE 148
Score = 32.2 bits (73), Expect = 0.87
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
+E S +E E+ +E E+ E + E ++ EE+ +EE+ S K + V
Sbjct: 178 KEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPV 233
Score = 30.7 bits (69), Expect = 2.3
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ S++EE+ E + +E++ E+ ++ E E
Sbjct: 114 EKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKV 155
Score = 30.7 bits (69), Expect = 2.6
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E DS E E+ E + E ++ EE+ +EE+ E+ + + + Q
Sbjct: 183 EQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236
Score = 30.3 bits (68), Expect = 3.5
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ S E+ + EE+ +E + +E++ E+ + + K
Sbjct: 107 EQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVH 156
Score = 30.3 bits (68), Expect = 3.8
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
N DS+ + + E D EE+ +EED E+ + +EE +E E++E
Sbjct: 185 ENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQEVP 240
Score = 29.9 bits (67), Expect = 4.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
D D E ++ + EE E+ EE E+ +++ +E+ E+E E + K
Sbjct: 141 EDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEK 195
Score = 29.9 bits (67), Expect = 4.3
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E + +E+ E E E+ +E E+ E + E ++ E +
Sbjct: 170 SEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVE 219
Score = 29.9 bits (67), Expect = 4.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE-----EEEEEEEEEEGEEEETETASSST 500
EDSD E EE E+ EE E+ +E+ E+E E +E E A +
Sbjct: 141 EDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTK 200
Query: 501 AKND 504
A+ D
Sbjct: 201 AETD 204
Score = 29.9 bits (67), Expect = 4.8
Identities = 14/67 (20%), Positives = 25/67 (37%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+ D +E E++ ED ++ +E E + EE E ETAS
Sbjct: 114 EKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQY 173
Query: 501 AKNDPQM 507
++ +
Sbjct: 174 KQDMKEK 180
Score = 29.5 bits (66), Expect = 5.4
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
Y + + + D E+ E+E ++ +E E+ E + E ++ EE+ +
Sbjct: 163 YHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYD 212
Score = 28.7 bits (64), Expect = 9.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
EEE E+ + E+ ++EE+G +E +
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLD 133
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 33.9 bits (77), Expect = 0.35
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 452 TSDEEYDSSEEEEE---EEEDEEEEEEEEEEEEEEEEEEGEEEETET---ASSSTAKND 504
T +E SEE+ E+ E EE+++++EE + +E E E S T++ D
Sbjct: 464 TMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEAD 522
Score = 33.9 bits (77), Expect = 0.42
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKND 264
ED D Y+ EE+++D+EE + ++E E E S T++ D
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEAD 522
Score = 30.4 bits (68), Expect = 3.9
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEE---EEEEEEEEEGEEEE 492
YD EE + EE+ E+ E GEE++
Sbjct: 455 SYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDD 494
Score = 30.0 bits (67), Expect = 5.3
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E++ + ++ + E+ E EE+++++EE + ++E E E + + + +S A
Sbjct: 463 MTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEAD 522
Query: 503 ND 504
D
Sbjct: 523 KD 524
Score = 30.0 bits (67), Expect = 6.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG-EEEETETAS 497
ED D Y E EED++++EE + ++E E E +G + ET A
Sbjct: 467 ETQRHSEEDLVNRFEDVRY----EHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEAD 522
Query: 498 SSTAKN 503
K+
Sbjct: 523 KDVNKS 528
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 33.1 bits (75), Expect = 0.36
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E++ EEE E E++ +E+E E E++E E + A +
Sbjct: 133 EKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTK 177
Score = 32.7 bits (74), Expect = 0.42
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEE---EEEGEEEETETAS---SSTAKNDPQMVTVP 511
EE++ EEE E E++ +E+E EEE +EEE + S+ A T
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPA 188
Score = 32.3 bits (73), Expect = 0.57
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
+EE ++E E++ E+E EEE++EEE T+ + + + P
Sbjct: 137 EEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAA 196
Score = 31.6 bits (71), Expect = 1.0
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EEE++EEE + E + EE + ++ K
Sbjct: 159 EEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQK 200
Score = 30.4 bits (68), Expect = 2.7
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 456 EYDSSEEE----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
E EEE E E++ +E+E EEE++EEE + + K + P
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAP 191
Query: 512 IT 513
Sbjct: 192 AA 193
Score = 28.9 bits (64), Expect = 7.6
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEE----TETASSSTAKNDPQMVTVP 271
+EE ++E E++ +E+E EE ++EE A S+ A T
Sbjct: 137 EEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPA 188
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 33.6 bits (76), Expect = 0.38
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ G + +++ EE D +++ EE D+++ E+EEEE+ + G+E S
Sbjct: 59 KGGAAGAKENSPPLPTEEDDEDVDDDSEEGDDDDGGAEDEEEEKVRGQSGQEGTVALGSG 118
Query: 499 STAK 502
ST K
Sbjct: 119 STEK 122
Score = 30.5 bits (68), Expect = 3.5
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE-------EEEEEEEEGEEEETET 495
+E +D D D EE D + E+EE+E+ + +E E++ G E++TE
Sbjct: 74 TEEDDEDVDDDSEEGDDDDGGAEDEEEEKVRGQSGQEGTVALGSGSTEKKLIGSEKQTEL 133
Query: 496 ASSSTAKNDP 505
+ SS P
Sbjct: 134 SISSAESISP 143
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 32.4 bits (74), Expect = 0.38
Identities = 8/28 (28%), Positives = 22/28 (78%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E+ + +D++E++E++EE + E+++E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 32.4 bits (74), Expect = 0.41
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
D + +++++++E++EE + E+++E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 31.6 bits (72), Expect = 0.60
Identities = 8/27 (29%), Positives = 21/27 (77%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+E+ D ++++E++E++EE + E+ +E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 31.2 bits (71), Expect = 0.94
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEED 469
R+ N+ R D + D D D D+E D + E+++E+
Sbjct: 36 RKRIKFNNPPRI-----DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 31.2 bits (71), Expect = 1.0
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
DE+ ++++E++ED+EE + E+++E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 30.8 bits (70), Expect = 1.3
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
DE+ ++++E+++++EE + E+ +E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 30.1 bits (68), Expect = 1.9
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETE 254
D + +++DE++E++EE E++ E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 30.1 bits (68), Expect = 2.0
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 220 FDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
D + D +E++E+++E + E+++E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 30.1 bits (68), Expect = 2.1
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEE 477
D + D +E++E++E+ + E+++E
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 30.1 bits (68), Expect = 2.1
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+E+ + ++++E++E++EE + E ++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 29.7 bits (67), Expect = 3.2
Identities = 6/27 (22%), Positives = 21/27 (77%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E+ + ++++E++E++EE + +++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 29.3 bits (66), Expect = 4.1
Identities = 7/26 (26%), Positives = 20/26 (76%)
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETE 494
DE+ + ++++E++E++EE + E+ +
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDD 73
Score = 28.5 bits (64), Expect = 7.5
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+E+ + ++++E++E++EE + E++ E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 33.5 bits (77), Expect = 0.39
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEG 488
EEEEEEE++ G
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMG 305
Score = 31.5 bits (72), Expect = 1.7
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 469 DEEEEEEEEEEEEEEEEEEGE 489
EEEEEEE +
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 2.1
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 463 EEEEEEDEEEEEEEEEEEEEE 483
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 2.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEE 481
+ EEEEEEE++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
Score = 30.8 bits (70), Expect = 2.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEE 480
++ EEEEEEE++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
Score = 30.8 bits (70), Expect = 2.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 465 EEEEDEEEEEEEEEEEEEEEE 485
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 3.3
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 462 EEEEEEEDEEEEEEEEEEEEE 482
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 4.1
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 464 EEEEEDEEEEEEEEEEEEEEE 484
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 4.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEE 479
++ EEEEEEE++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 32.8 bits (75), Expect = 0.40
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ SE E E E+E + E+E E EEEE +E++ +
Sbjct: 119 GAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKK 161
Score = 32.8 bits (75), Expect = 0.41
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+ D E E E E + E+E E EEEE++ ++++ E K D
Sbjct: 118 YGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKD 172
Score = 31.2 bits (71), Expect = 1.5
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDE-EEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
D E S E E+E E+E E EEEE++E+++ +E + E K
Sbjct: 118 YGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Query: 506 QM 507
Sbjct: 178 VE 179
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 33.4 bits (76), Expect = 0.40
Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 405 PTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDE--------- 455
P R Q+ +D + + + + W + D + DS+ SD
Sbjct: 124 PACLRQKQRRREDQEDGVRQPGRTEKSGSDFWEPPSSDEDDSDSEDSMSDLYPPELFTLK 183
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+ +E+++ E ++E+E E E E +++ ++++ + + KN
Sbjct: 184 NPGKEQNGDEDDDFETDDEDEMEVESPELQQKRSKKQSGSLTKKFKKN 231
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.8 bits (78), Expect = 0.41
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 446 EDSDFDTSDEEYDSSEE---EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
ED S + D EE E+EE+E +E++ + +++EE+++ E E+ E A A+
Sbjct: 536 EDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE 595
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 33.4 bits (77), Expect = 0.42
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E+ EEE E+ E E+E+ EEE+EEEE+EG E + S T KN
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKN 47
Score = 30.3 bits (69), Expect = 4.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
++ EEE EE E E+E+ EEE+EEEE+E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.9 bits (68), Expect = 4.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ EEE EE + E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.5 bits (67), Expect = 7.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ EE+ EE E E+E+ EEE+EEE +E E +K
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSK 43
Score = 29.5 bits (67), Expect = 7.9
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
F+ +EE + E E+E+ +EE+EEEE+EG E + S T KN
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKN 47
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 33.4 bits (76), Expect = 0.47
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 447 DSDFDTSDEEYDSSEEEEEE--------EEDEEEEEEEEEEEEEEEEEEGE 489
D EE + +E +E+ EE EE +E++EEEE EEEEE +
Sbjct: 301 AKDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEEND 351
Score = 32.6 bits (74), Expect = 0.67
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Query: 461 EEEEEEEEDEE---------EEEEEEEEEEEEEEEEGEEEETET 495
EE+E ++E +E EE EE +E++EEEE EEEE +T
Sbjct: 309 EEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDT 352
Score = 29.6 bits (66), Expect = 7.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGE 249
+ + EE +E+++EEE EEEEE +
Sbjct: 328 DEEMLEETQEQQEEEENEEEEEND 351
Score = 29.2 bits (65), Expect = 9.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETET 255
+EE EE +E++EEEE EEEE +T
Sbjct: 328 DEEMLEETQEQQEEEENEEEEENDT 352
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 33.7 bits (78), Expect = 0.48
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
S+ EEEE ++E + E EEE + E EE E E E + + A +
Sbjct: 35 SSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAE 83
Score = 32.9 bits (76), Expect = 0.79
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ EEEE +E+ + E EEE + E EE E EE A ++ A +
Sbjct: 36 STVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Score = 31.4 bits (72), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EEE +EE + E EEE + E EE EEE + +++ A +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 33.4 bits (77), Expect = 0.49
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E + EE EEE EE EE + E+ + E++ +E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQL 866
Score = 31.5 bits (72), Expect = 2.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EE EEE +E EE + E+ + E++ ++ + +
Sbjct: 834 EEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 30.7 bits (70), Expect = 4.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + E E +E EEE EE EE + E+ E++ +
Sbjct: 820 YKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDID 859
Score = 29.6 bits (67), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
T+ + +E E E+ EEE EE EE + E+ + E++ +
Sbjct: 818 TTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDD 860
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 32.8 bits (75), Expect = 0.50
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 447 DSDFDTSDEE--YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ D+ DEE Y +SE + + +DEEE +E++EEE EE+E+
Sbjct: 189 EDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDG 231
Score = 30.5 bits (69), Expect = 2.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
D + ED + E ++EEE DE++EEE EE E+ +
Sbjct: 193 ADEDEEDGY--VASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 30.5 bits (69), Expect = 2.5
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
D + ED + S+ + ++EEE +ED+EEE EE+E+ +
Sbjct: 193 ADEDEEDG-YVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 30.1 bits (68), Expect = 3.9
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D +DE+ + E + + ++EEE +E++EEE EE E+ +
Sbjct: 191 DWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 32.4 bits (74), Expect = 0.52
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E +D +++EE EE +E ++ T K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKK 194
Score = 30.8 bits (70), Expect = 1.7
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E ++++EE EE +E ++ T K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKK 194
Score = 30.0 bits (68), Expect = 3.7
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E ++ ++++E EE +E ++ ++ ET
Sbjct: 157 AERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 28.9 bits (65), Expect = 9.1
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E ++++EE +E +E ++ ++ E ++ +
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 33.4 bits (77), Expect = 0.53
Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 29/146 (19%)
Query: 108 LVISYIIGGAF---LFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAE 164
L++ + A L E G + F IT + FG+ VP KS ++ E+ A
Sbjct: 72 LLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVP--KSIAIRNPEKVA- 128
Query: 165 LRIA--LCSLYLLF--GIALLAMSFNLVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDF 220
L IA L Y L I LL N AI + G+ E + +
Sbjct: 129 LLIAPPLRFFYRLLYPLIWLLNRIAN-----------AILRLFGV--------EPVEEEA 169
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEE 246
TS EE E EE EEEE E
Sbjct: 170 LTSTEEELELVSESAEEGVLEEEERE 195
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 33.0 bits (76), Expect = 0.53
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EEEEE+ EEE +EE +E++EE++ EE E + A S
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLS 304
Score = 31.5 bits (72), Expect = 1.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EEE +EE E++EE+++EE E + + EE
Sbjct: 277 EEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 30.7 bits (70), Expect = 2.8
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
EEEE+ + EEE +EE +E++EE+++ E E S
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLS 304
Score = 30.3 bits (69), Expect = 4.1
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
D + EEEEE+ + EEE +EE +E++EE+ +EE + + +
Sbjct: 262 DKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPE 306
Score = 29.9 bits (68), Expect = 5.3
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E+ + EEE +EE +E++EE+++EE E + + EE
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 33.5 bits (76), Expect = 0.54
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSST 260
+SE E S SD + + + EE++ E +++ + E+ AS T
Sbjct: 97 ESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICT 145
Score = 32.7 bits (74), Expect = 0.92
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+SE E S SD + + + EE++ E +++ + E+E
Sbjct: 97 ESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 32.7 bits (74), Expect = 0.97
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E E E + + ++E+++ EE++ E
Sbjct: 96 SESESEASLEIDSDIKDEKQKSLEEQKIAPEI 127
Score = 29.6 bits (66), Expect = 7.8
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+NG+ +S+ + S E DS ++E+++ EE++ E ++
Sbjct: 87 DVNNGEEFLSESESEASLEI-DSDIKDEKQKSLEEQKIAPEIPVKQ 131
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 33.5 bits (76), Expect = 0.55
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEEE 491
+ D + D EEEE E DEE EE EE+++E E+ EG+EE
Sbjct: 229 EIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEE 273
Score = 30.4 bits (68), Expect = 4.4
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
D D +EE++ EE EE EED++E E+ E +EE+ + +EE
Sbjct: 236 DGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 32.2 bits (74), Expect = 0.58
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE+EEEE+ E+EEE EEE EE EEE EE +
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELK 31
Score = 31.8 bits (73), Expect = 0.65
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+EEEEE EDEEE EEE EE EEE EE ++
Sbjct: 2 EKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 29.5 bits (67), Expect = 4.2
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE+EEEEE E+EEE EEE EE EEE E ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKD 32
Score = 29.1 bits (66), Expect = 5.7
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
EE + EE E+EEE EEE EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 33.3 bits (76), Expect = 0.59
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
EE EE+EDE E E + ++ EG+EE + + AK P+ V
Sbjct: 490 EELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAKEKPEDV 543
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.5 bits (77), Expect = 0.59
Identities = 17/37 (45%), Positives = 18/37 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E +E E E E EE EE EE EEE E E E
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
Score = 32.7 bits (75), Expect = 1.0
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNR---RWNARNGDSEYEDSDFDTSDEEYDSSEEEEE 465
L+K +++ + + R + R E ++ + EE EE E
Sbjct: 715 EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL---EERLE 771
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E E+E E E E EE E + E+ +EE +
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
Score = 31.6 bits (72), Expect = 2.0
Identities = 24/96 (25%), Positives = 36/96 (37%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
+LQK + +R R E ++ + + + D EE E E
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
++ EE +EE E E E EE E E E S +
Sbjct: 344 EKLEELKEELESLEAELEELEAELEELESRLEELEE 379
Score = 31.2 bits (71), Expect = 2.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ EE + +EE +E E+E EE E +E EE+ EE
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
Score = 31.2 bits (71), Expect = 3.1
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 411 LQKTIQDTTGAYN--RRRSSAMNHN-RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEE 467
L++ I++ S + + R + E + + + EE +S +E EE
Sbjct: 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
Query: 468 EDEEEEEEEE-EEEEEEEEEEGEEEETETASSSTAKNDPQ 506
E EE+ EE +EE E E E EE E E + + +
Sbjct: 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 33.5 bits (76), Expect = 0.59
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 236 EEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLFSK--- 292
E+D+E EE E E + +E ++ + + A + PQ + P +YG +F++
Sbjct: 357 EDDDESEEIESECDPDEDKSGAEALA-SIPQTLPDPP---------TVYGRPKVFARKAD 406
Query: 293 ----------WEDWNILDGSRSSSRSRSRQQTER 316
D +++ R + +TE+
Sbjct: 407 LKSTKKCRAIVTDPSVIKAIEEEHRKKKAARTEQ 440
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 33.1 bits (75), Expect = 0.60
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+ DS Y S +S++E DS+++ +E D E ++ + EEEE EE
Sbjct: 472 DSDSSYSYSTT-SSEDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEE 521
Score = 30.7 bits (69), Expect = 3.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG-----EEEETETAS 257
+ DS Y S +S++E DS+++ +E + E ++ G EEEE E +
Sbjct: 471 DDSDSSYSYSTT-SSEDESDSADDSWGDESDSGIEHDDGGVGQAIEEEEEEERA 523
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 33.1 bits (76), Expect = 0.62
Identities = 6/44 (13%), Positives = 22/44 (50%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ SD +E+ + +E + + ++E ++ E++ +++
Sbjct: 136 YGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDDA 179
Score = 31.1 bits (71), Expect = 2.8
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
++ Y S+ +E DE+ + EE + + ++E ++ E +
Sbjct: 133 EKYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVD 176
Score = 29.6 bits (67), Expect = 7.9
Identities = 10/60 (16%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 187 LVQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDS-SEEEEEEEDEEEEEEE 245
+V+E+ +S I K+ G S ++ D + + D+ +E ++ +++ +++
Sbjct: 122 IVEEDKLSA--LIEKYYGG-SDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 29.6 bits (67), Expect = 8.4
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E+ E+Y + +E +E+ + EE + + ++EG ++ + A A
Sbjct: 124 EEDKLSALIEKYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDDA 179
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 33.1 bits (75), Expect = 0.63
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
DE Y ++EE EE++ EE EE ++EE ++ G +E E
Sbjct: 168 DEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSAGFLDEFE 208
Score = 30.7 bits (69), Expect = 3.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
ED + +DEE S E++ EE E+ ++EE ++ +E E+
Sbjct: 167 EDEAYVRNDEE--SEEDDGEEWEEMDDEEGSDDRSSAGFLDEFEDLSAP 213
Score = 30.0 bits (67), Expect = 5.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
D D E + E+E +EE EE++GEE E
Sbjct: 152 QPDMDPRLREVLEALEDEAYVRNDEESEEDDGEEWE 187
Score = 29.6 bits (66), Expect = 7.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D D E + E+E ++EE EE++ EE EE ++E ++ +A
Sbjct: 152 QPDMDPRLREVLEALEDEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSA 201
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 33.2 bits (75), Expect = 0.64
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
SE D ++D + E S E +E EE EEE+ E E+ EE
Sbjct: 96 SELTD-EYDPARGEGIISTSESSDESREESEEEKANEISEKAGAVPEE 142
Score = 32.8 bits (74), Expect = 0.77
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+EYD + E E +E EE EEE+ E E+ + K
Sbjct: 100 DEYDPARGEGIISTSESSDESREESEEEKANEISEKAGAVPEEGNPTKR 148
Score = 31.7 bits (71), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
SE D ++D + E S E +E EE EEE+ E E
Sbjct: 96 SELTD-EYDPARGEGIISTSESSDESREESEEEKANEISE 134
Score = 30.5 bits (68), Expect = 4.0
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEE-------EEEEEEEEGEEEET 493
D D DF S E+++ E + ++ E+E E + ++GE E
Sbjct: 351 TDDGIRDKDFSAYTASKLSDEDDDSVMESKMQKLFSEKEIDFGLNSELVDMSDDGENGEM 410
Query: 494 ETASSS 499
E +S
Sbjct: 411 EDTFTS 416
Score = 30.1 bits (67), Expect = 5.3
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEE------EEEEEEEEEEEEEGEEEETETASSS 499
E S+ T +EE S+ E +E D E E +E EE EEE E +E A +
Sbjct: 81 ESSEI-TDNEEVASASSELTDEYDPARGEGIISTSESSDESREESEEEKANEISEKAGAV 139
Query: 500 TAKNDP 505
+ +P
Sbjct: 140 PEEGNP 145
Score = 29.4 bits (65), Expect = 9.3
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
+EYD + E E +E E EEE S A P+
Sbjct: 100 DEYDPARGEGIISTSESSDESREESEEEKANEISEKAGAVPE 141
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 32.3 bits (74), Expect = 0.64
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+++E+E+E+E E+E++ +E E +E KN
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKN 53
Score = 31.9 bits (73), Expect = 0.88
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
++++EE+E+E E+E++ +E +E + +P
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNP 54
Score = 31.9 bits (73), Expect = 0.89
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 229 SSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
S +++EEEDE+E E+E++ +E +E ++ N
Sbjct: 12 SFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPN 46
Score = 31.6 bits (72), Expect = 1.2
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+++EEE+EDE E+E++ +E E +E
Sbjct: 15 DDDEEEDEDEGEDEKKVPKESSEPDEAN 42
Score = 31.6 bits (72), Expect = 1.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
++EEE+EDE E+E++ E E + A+ + K
Sbjct: 15 DDDEEEDEDEGEDEKKVPKESSEPDEANVNPNK 47
Score = 31.6 bits (72), Expect = 1.4
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
S +++EEE+++E E+E++ +E E +E
Sbjct: 12 SFGDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 30.8 bits (70), Expect = 2.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
S +++EEEDE+E E+E++ +E E +
Sbjct: 12 SFGDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 30.8 bits (70), Expect = 2.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ +EEE+E+E E+E++ +E E +E
Sbjct: 13 FGDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 29.6 bits (67), Expect = 5.7
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+++EE++E+E E+E++ +E E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 29.2 bits (66), Expect = 8.0
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 473 EEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+++EEE+E+E E+E + + + N +
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKK 48
Score = 28.9 bits (65), Expect = 9.4
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKN 263
+ +EEE+E++ E+E++ + E E + K
Sbjct: 13 FGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKK 49
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 32.3 bits (74), Expect = 0.70
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
DEE E E E E E E+ EE +E ++E+ EE+ +D +
Sbjct: 171 DEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVP 230
Query: 514 L 514
+
Sbjct: 231 V 231
Score = 29.6 bits (67), Expect = 6.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D D E E E+E E+ EE +E ++E+ + E +E E
Sbjct: 169 YRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDERE 212
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 32.5 bits (73), Expect = 0.70
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE-EEETETASSSTAKNDPQMVTV 510
D + +++ EE+E E E +EE + E E+ EG E + E +S + +P
Sbjct: 60 DKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQEPAAAPG 119
Query: 511 PIT 513
P
Sbjct: 120 PAA 122
>gnl|CDD|190258 pfam02250, Orthopox_35kD, 35kD major secreted virus protein. This
family of orthopoxvirus secreted proteins (also known as
T1 and A41) interact with members of both the CC and CXC
superfamilies of chemokines. It has been suggested that
these secreted proteins modulate leukocyte influx into
virus-infected tissues.
Length = 226
Score = 32.2 bits (73), Expect = 0.71
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 241 EEEEEEEGEEEETETASSSTAKNDPQMVTVPITLC---LMIMVGYIYGGAV-LFSKWEDW 296
+ EE + +E TE +STA D V TL L I G+ S++
Sbjct: 36 DIEESADDIDESTEKEYTSTATGDAAGVNTYYTLVGGGLSIPFGFTGCPFNPSISEYSKG 95
Query: 297 NILDGSRSSSRSRSRQQTERSFT 319
+ R SSR+ +Q + S
Sbjct: 96 RYVY-VRLSSRAPWQQTNDLSIN 117
Score = 30.2 bits (68), Expect = 3.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 481 EEEEEEEGEEEETETASSSTAKNDPQMVTVPITLC---LMIMVGYI 523
+ EE + +E TE +STA D V TL L I G+
Sbjct: 36 DIEESADDIDESTEKEYTSTATGDAAGVNTYYTLVGGGLSIPFGFT 81
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 31.4 bits (72), Expect = 0.74
Identities = 8/43 (18%), Positives = 25/43 (58%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
D + +E ++ + +EE ++++E++ + + + ++ E ET
Sbjct: 9 DETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENET 51
Score = 31.1 bits (71), Expect = 0.80
Identities = 8/45 (17%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 444 EYEDSDF-DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E ED F + + ++EE +++++++ + + + ++ + E E
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 31.1 bits (71), Expect = 0.98
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSE 231
V++E A K+L +S + D + D+D D SD+ +E
Sbjct: 7 VEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 29.1 bits (66), Expect = 3.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E EDE +E+ + +EE +++E +T + S
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDS 39
Score = 28.8 bits (65), Expect = 6.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E E+E +E+ + +EE ++ +E++T+T S
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDS 39
Score = 28.0 bits (63), Expect = 9.6
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE 473
+ D DE+ ++ + ++ D E E
Sbjct: 20 KNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 28.0 bits (63), Expect = 9.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDE 470
A ++ E D D D + DS ++ + E+E
Sbjct: 18 APKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 32.8 bits (75), Expect = 0.74
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 445 YEDSDFDT---------SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
YED F + + E YD E E+ E E EE+EE+++ +++
Sbjct: 551 YEDKFFTSRLLPPTFVPTQEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 31.0 bits (70), Expect = 0.75
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ E ++EE++EEEEEEE++ G
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDLG 107
Score = 30.6 bits (69), Expect = 0.98
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ + E ++EE++EEEEEEE++
Sbjct: 80 GAATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 30.3 bits (68), Expect = 1.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEE 478
+ E ++EE+ EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.9 bits (67), Expect = 2.0
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEE 481
++ + E +++E++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.1 bits (65), Expect = 3.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 230 SEEEEEEEDEEEEEEEEE 247
+E ++EE+ EEEEEEE++
Sbjct: 88 AEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEE 247
+ E ++EE +EEEEEEE+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 28.7 bits (64), Expect = 5.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEE 485
+ + ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 5.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEE 491
+ E ++EE++EEEEE E++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 6.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEG 248
+ ++EE+++EEEEEE++ G
Sbjct: 83 TAGAKAEAKKEEKKEEEEEEEDDLG 107
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 32.8 bits (75), Expect = 0.76
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+S+E+ + E + + E EEEEE E + +
Sbjct: 77 ASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGG 125
Score = 31.7 bits (72), Expect = 1.7
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
N + E S + ++ + E + + E EEEEE E + +
Sbjct: 64 NPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASI 123
Query: 497 SS 498
Sbjct: 124 GG 125
Score = 30.9 bits (70), Expect = 2.8
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 452 TSDEEYDSSEEEE----EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
T S E+ E + + E EEEE EE + +S
Sbjct: 72 TESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIG 124
Score = 29.4 bits (66), Expect = 7.7
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 207 KSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
S+ S E + +S+ + E EEE E EET +S
Sbjct: 72 TESSAASSEEKPA--KPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIAS 122
>gnl|CDD|215973 pfam00527, E7, E7 protein, Early protein.
Length = 92
Score = 30.3 bits (69), Expect = 0.76
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEE 475
E+ D SEEEEE+EED +
Sbjct: 22 HCYEQLDDSEEEEEDEEDRGQPPA 45
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 32.4 bits (74), Expect = 0.76
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEEEETETA 496
E EEEE E+ E +EEE E +E +E EEG E E
Sbjct: 30 VAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEG 75
Score = 31.6 bits (72), Expect = 1.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ + EEEE E+ E +EEE E +E +E EE E
Sbjct: 24 ANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGARE 70
Score = 28.9 bits (65), Expect = 8.0
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEEE 491
+ N + +EE + + E +EEE + +E +E EE E EEG +
Sbjct: 22 DLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQL 78
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 32.7 bits (74), Expect = 0.77
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E ++ DF S E ++++ E EE EE+ +EE+E++E E E+ +
Sbjct: 350 EGDNIDFKPSKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSM 398
Score = 30.0 bits (67), Expect = 5.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 214 EYEDSDFDTS-------DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
E ++ DF S D+ + E EE+ DEE+E++E E E+ +T +
Sbjct: 350 EGDNIDFKPSKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPAR 409
Query: 267 M 267
Sbjct: 410 E 410
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.9 bits (75), Expect = 0.77
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 428 SAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
S+ ++ N DS S S E S+ +EE + + + E EE E E+E E
Sbjct: 22 SSQKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIE 81
Query: 488 GEEEETETASSS 499
E+ +++ SS
Sbjct: 82 VEQNQSDVLKSS 93
Score = 32.1 bits (73), Expect = 1.5
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
R++ + +R NGD E DS TS + E+ +E+ + + + E EE
Sbjct: 16 PRTTVESSQKRIQQNNGDKE--DSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEE 73
Query: 485 EEEGEEEETETASSSTAKND 504
E +E E E S K+
Sbjct: 74 VEAEDEIEVEQNQSDVLKSS 93
Score = 32.1 bits (73), Expect = 1.5
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 440 NGDSEYE-----------DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
NG + Y+ + D E EE+ E E +EE E E + EE+
Sbjct: 220 NGQNVYDNNDHKDFCVEIEGGMDEHSFEDFLLEEKRRELEKLAKEEAERERQAEEQRRRE 279
Query: 489 EEEETETASSSTAKNDPQM 507
EE+ A + AK + +
Sbjct: 280 EEKAAMEADRAQAKAEVEK 298
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 30.1 bits (68), Expect = 0.79
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+EE+ E + +E+ E+ + ++++ ++E A S+A
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLAEGSSAP 76
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 32.7 bits (75), Expect = 0.79
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 18/86 (20%)
Query: 429 AMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--- 485
+ H RR +E +E D E+ EE D E+ +E E++ E+
Sbjct: 304 VLPHRRR------RKPFEQP---QGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGH 354
Query: 486 ------EEGEEEETETASSSTAKNDP 505
+E E + E A + DP
Sbjct: 355 PTPGNDDEKEPDPQEEADGQGSSTDP 380
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 32.5 bits (75), Expect = 0.80
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
EEEEE+EE EEEE + E + A Q
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQE 269
Score = 32.1 bits (74), Expect = 1.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 450 FDTSDEEYDS--SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D + E EEEEEEEE EEEE + E + + E
Sbjct: 213 VDFAKELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQ 261
Score = 30.2 bits (69), Expect = 4.3
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
EEE EEEE + E + + E+++ K
Sbjct: 229 EEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 29.4 bits (67), Expect = 7.7
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 472 EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EEEEEEEE EEEE + E TA ++ A Q P
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPP 265
Score = 29.4 bits (67), Expect = 7.9
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EEEEEE E+EE + E + ++E + A +
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEP 270
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 31.9 bits (73), Expect = 0.81
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
ED +F+ E D + +++E++D+++ ++ E
Sbjct: 2 SKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 31.5 bits (72), Expect = 1.3
Identities = 10/39 (25%), Positives = 26/39 (66%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
S+E++E E EE+E++ +++E+++++ ++ T A
Sbjct: 2 SKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 31.1 bits (71), Expect = 1.6
Identities = 8/36 (22%), Positives = 25/36 (69%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+S +E++E E EE+E++ +++E++++ + ++
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDL 36
Score = 30.3 bits (69), Expect = 3.3
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 212 DSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
ED +F+ E D + +++E+D++++ ++ E
Sbjct: 2 SKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 30.0 bits (68), Expect = 4.4
Identities = 9/38 (23%), Positives = 26/38 (68%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
S+ +E++E + EE+E++ +++E+++ ++ + TA
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTA 38
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 32.3 bits (74), Expect = 0.81
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
++++E +E E+ EE+ E E EEE +E ++T+ ASS K
Sbjct: 47 EQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEK 96
Score = 30.4 bits (69), Expect = 3.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
++Y +E+E EEEEE+ E+ EE + +E E A +
Sbjct: 23 QKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAA 75
Score = 30.0 bits (68), Expect = 4.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+ EEEEE E+ EE +E +E EE EE+ E ++ +
Sbjct: 31 SIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEE 78
Score = 29.6 bits (67), Expect = 6.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E+EE EEE E EE + E EEG E+
Sbjct: 102 EREQEEWEEELERLIEEAKAEGYEEGYEK 130
Score = 29.2 bits (66), Expect = 8.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ E+ EEEEE+ E EE +E +E EE EE E E A
Sbjct: 31 SIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEE 78
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 30.8 bits (70), Expect = 0.82
Identities = 8/26 (30%), Positives = 22/26 (84%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEE 491
+E +E+++E+E E+++E +E++ E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 30.0 bits (68), Expect = 1.4
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E EE++ E+E E+++E +E+++E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEG 488
+E EE+D+E+E E+++E +E+++E+
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ E EE+++EDE E+++E +E+++E++
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.3 bits (66), Expect = 2.3
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGE 489
+E EED++E+E E+++E +E+++E +
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 28.9 bits (65), Expect = 3.2
Identities = 7/26 (26%), Positives = 22/26 (84%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEE 490
+E E++++E+E E+++E +E+++ ++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 28.1 bits (63), Expect = 6.1
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 230 SEEEEEEEDEEEEEEEEEGEEEETE 254
++E EE++ E+E E+++E +E++ E
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDE 104
Score = 27.7 bits (62), Expect = 7.8
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E EE+++E+E E+++E +E+ +E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|220077 pfam08938, DUF1916, Domain of unknown function (DUF1916). This
domain is found in various eukaryotic HBS1-like
proteins.
Length = 148
Score = 31.3 bits (71), Expect = 0.82
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 23/72 (31%)
Query: 434 RRWNAR--NGDSEYEDSD---------------------FDTSDEEYDSSEEEEEEEEDE 470
R N R N D ++ED D + D + S E EEE+++
Sbjct: 3 RHRNVRGYNYDDDFEDDDLYGQSVEDDYCISPTTAAQFIYSRRDGQQSMSVEPVEEEDED 62
Query: 471 EEEEEEEEEEEE 482
E E+E E + E
Sbjct: 63 EYEDENERRDSE 74
Score = 30.5 bits (69), Expect = 1.6
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 21/70 (30%)
Query: 205 IIKSSNGDSEYEDSD---------------------FDTSDEEYDSSEEEEEEEDEEEEE 243
++ N D ++ED D + D + S E EEEDE+E E
Sbjct: 6 NVRGYNYDDDFEDDDLYGQSVEDDYCISPTTAAQFIYSRRDGQQSMSVEPVEEEDEDEYE 65
Query: 244 EEEEGEEEET 253
+E E + E+
Sbjct: 66 DENERRDSES 75
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 32.7 bits (74), Expect = 0.83
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
SE+ D + E+ E +E+EED ++ +E+ EE + EE +EG+E +
Sbjct: 196 SEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGK 245
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 32.4 bits (74), Expect = 0.84
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE-EEEGEEEETETASSSTA 501
++E F + + + E E E E E E + E +T+ ++ +A
Sbjct: 4 VDFEP--FPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNADSA 61
Query: 502 KNDPQMVTVPITLCLMIMVGYIYGGAVLFSKWEDWN 537
P V + G + S +D+
Sbjct: 62 FEIPSEVGE-----DLRENAEEALGELSSSDEDDYY 92
Score = 30.1 bits (68), Expect = 5.5
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEEE---EEEEEEGEEEETETASSSTAKNDPQMVT 269
++E D E + E E E E EGE++ + N
Sbjct: 4 VDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNADSAFE 63
Query: 270 VPITLCLMIM-VGYIYGGAVLFSKWEDWN--ILDGSRSSSRSRSRQQTER 316
+P + + G + S +D+ +L SR + R++ ++
Sbjct: 64 IPSEVGEDLRENAEEALGELSSSDEDDYYRMLLGLGHELSRIKVREEVDK 113
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 32.2 bits (74), Expect = 0.85
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
EEE + EE EE +E+ EE E+ E+ E E AS
Sbjct: 7 EEELDKAEERLEEAQEKLEEAEKRAEKAEAEVAS 40
Score = 31.8 bits (73), Expect = 0.97
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 225 EEYDSSEEEEEEEDEEEEEEEEEGEEEETETAS 257
EE D +EE EE E+ EE E+ E+ E E AS
Sbjct: 8 EELDKAEERLEEAQEKLEEAEKRAEKAEAEVAS 40
Score = 29.1 bits (66), Expect = 8.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EEE ++ E+ EE +E+ EE E+ E+ E E
Sbjct: 7 EEELDKAEERLEEAQEKLEEAEKRAEKAEAE 37
Score = 28.8 bits (65), Expect = 9.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
EE D +EE EE +++ EE E+ E+ E E
Sbjct: 8 EELDKAEERLEEAQEKLEEAEKRAEKAEAE 37
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 31.2 bits (71), Expect = 0.86
Identities = 10/68 (14%), Positives = 30/68 (44%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
RR+ M + D + +D T ++ +EE+ E +++++ + +
Sbjct: 77 RRAKQMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSD 136
Query: 485 EEEGEEEE 492
+E ++++
Sbjct: 137 ADEDDDDD 144
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.8 bits (75), Expect = 0.87
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
+ ++ +++ S + + E + + EE + E EE E
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREE-------ELRELERLLEELEEKIERLEELE 297
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E EE EEE E EE EE + S
Sbjct: 298 REIEELEEELEGLRALLEELEELLEKLKS 326
Score = 32.4 bits (74), Expect = 1.1
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ E EE E+ +E ++ EE +EE EE E +
Sbjct: 546 EELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKEL 605
Query: 502 K 502
+
Sbjct: 606 E 606
Score = 32.4 bits (74), Expect = 1.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
EEE E E EE +EE EE+ E+ E EE E
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQ 556
Score = 31.3 bits (71), Expect = 2.6
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 434 RRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ + + EE + E+E EE E E EE EEE ++ EE+ + E +E
Sbjct: 389 EAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKEL 448
Query: 494 ETA 496
A
Sbjct: 449 MIA 451
Score = 31.3 bits (71), Expect = 2.9
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEE-----EEEEEEEGEEEETE 494
+ + EE+ E+ E+ EE EE +E+ +EE + E+ E
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQE 570
Score = 29.3 bits (66), Expect = 9.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
E EE EE+ E E EE EE +E+ + + +EE +
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQEL 571
Score = 29.3 bits (66), Expect = 9.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
E+ + E EEE E ++ EE +EE+EEEE E E E E
Sbjct: 197 LLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL 241
Score = 29.3 bits (66), Expect = 9.6
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
A + E + + EE + +E+ + ++ +EE + E+ +E +E E T
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583
>gnl|CDD|107089 PHA01819, PHA01819, hypothetical protein.
Length = 129
Score = 31.1 bits (69), Expect = 0.87
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTV 510
++++E +S+EE E E+ EE E++ E EEE + E T ++K DP ++
Sbjct: 18 ESTEENLESTEETSESTEESTEESTEDKTVETIEEENENKLEPTTTDEDSSKFDPVVLEQ 77
Query: 511 PIT 513
I
Sbjct: 78 RIA 80
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 30.5 bits (69), Expect = 0.88
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+E + EE +EE EE E E E +
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKA 35
Score = 30.1 bits (68), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E D EE +EE EE E + E E E
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAE 32
Score = 29.7 bits (67), Expect = 1.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E + EE +EE EE E + E E E++
Sbjct: 4 ESTDVEELTDEEVEELLSELQARNEAEAEKK 34
Score = 28.9 bits (65), Expect = 3.9
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+E + EE +EE EE E + E E + A+ KN
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKN 42
Score = 28.5 bits (64), Expect = 4.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D S + EE ++E EE E + E E E
Sbjct: 3 DESTDVEELTDEEVEELLSELQARNEAEAE 32
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.7 bits (75), Expect = 0.88
Identities = 7/30 (23%), Positives = 20/30 (66%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ E++D+ E ++ E+E++E++E++
Sbjct: 1359 KKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 32.7 bits (75), Expect = 0.96
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ + E+D++ E ++ E+E++E++E+
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 32.7 bits (75), Expect = 1.0
Identities = 9/27 (33%), Positives = 23/27 (85%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEE 484
DSS E++++ E ++ E+E++E++E+++
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 31.6 bits (72), Expect = 2.4
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
++ + ED+++ E ++ E+E++E++E
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385
Score = 30.4 bits (69), Expect = 4.4
Identities = 6/29 (20%), Positives = 21/29 (72%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ + E++++ E ++ E+E++E+ E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.0 bits (68), Expect = 6.4
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEE 477
D+S E+ D SE ++ E+ED+E++E+++
Sbjct: 1361 SDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.0 bits (68), Expect = 7.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEE 243
DS + D+ E+E++ED+E+++
Sbjct: 1361 SDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 32.7 bits (74), Expect = 0.88
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
S D+ D S EE+E EDE+ + + + EE + + + E S
Sbjct: 454 SISDSEDINMGS-AGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGS 502
Score = 31.9 bits (72), Expect = 1.3
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
DSE + ++E + + + + D EE + + + E EE
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 31.9 bits (72), Expect = 1.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S+ ED + ++ EE +S +E+ + D + EE + + + E G +EE
Sbjct: 455 ISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 31.5 bits (71), Expect = 1.8
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 432 HNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
H++ ARN + + S S E+ EE+E E+E+ + + + EE
Sbjct: 433 HSKGIKARNEEVQERLQTDLGSI----SDSEDINMGSAGEEDESEDEDFQMVSDSDVAEE 488
Query: 492 ETETASSSTAK 502
A+ S A+
Sbjct: 489 YDLQAALSDAE 499
Score = 30.7 bits (69), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEE-EEEEEGEEEETETASSSTAK 262
S D+ D S+ EE+E EDE+ + + + EE A+ S A+
Sbjct: 454 SISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAE 499
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 32.7 bits (75), Expect = 0.89
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEE-EEEEEEEEEEEEEEEEGEEEETETASSSTA 501
E + +S E E++ E E E+EE ++ EE+ E E A
Sbjct: 199 EELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKL 258
Query: 502 KN 503
KN
Sbjct: 259 KN 260
Score = 31.2 bits (71), Expect = 2.2
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 436 WNARNGDSEYEDSDFDTSDEEYD----------SSEEEEEEEEDEEEEEEEEEEEEEEEE 485
N + E S ++ EE D + EEEE E +E+ EE + EEE
Sbjct: 152 IKEDNLKDDLE-SLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELL 210
Query: 486 EEGEEEETE 494
E +E
Sbjct: 211 ARLESKEAA 219
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 31.9 bits (73), Expect = 0.91
Identities = 8/48 (16%), Positives = 28/48 (58%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+ ++++ +E +++E+ ++ E EE + EE +++ ++ + +V
Sbjct: 18 RKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIV 65
Score = 31.9 bits (73), Expect = 0.94
Identities = 7/44 (15%), Positives = 22/44 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ + + ++ +E +++E+ ++ E E + E + A +
Sbjct: 15 REQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIE 58
Score = 30.4 bits (69), Expect = 2.9
Identities = 8/45 (17%), Positives = 23/45 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ + +++ +E +++E+ ++ E EE EE ++ +N
Sbjct: 17 QRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 28.7 bits (65), Expect = 0.93
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEE 486
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 28.7 bits (65), Expect = 0.93
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEE 491
E++ EEE+++ EE +E E+E
Sbjct: 16 AEQKAEEEKKKIEERRKEIEKE 37
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEE 487
+ E+ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEE 482
E++ EEE ++ EE +E E+E
Sbjct: 16 AEQKAEEEKKKIEERRKEIEKE 37
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETE 494
+ E++ EEE+++ EE +E E E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 27.9 bits (63), Expect = 1.8
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEE 490
+ E++ EEE+++ EE +E +E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 27.9 bits (63), Expect = 1.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 231 EEEEEEEDEEEEEEEEEGEEE 251
E++ EEE ++ EE +E E+E
Sbjct: 17 EQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 31.9 bits (73), Expect = 0.93
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ EE E + EEEE EE + G + T+ A
Sbjct: 31 SQQAEELRREAKLEEEEARISEEAQNAGLKSATDLA 66
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 30.2 bits (68), Expect = 0.94
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE--EEGEEEETETASSSTAK 502
+ E + +EEE + +E +E EEE E+E E+ EEGE+E S + K
Sbjct: 33 ARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKEK 84
Score = 27.9 bits (62), Expect = 4.9
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E EE EEE + EE +E EEE E+E +
Sbjct: 32 EARELLEEAEEEASKLGEEIIKEAEEEIEKEAEK 65
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 31.8 bits (71), Expect = 0.94
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E +SS+EEE+++ EE + E ++EE +EEE + ++
Sbjct: 134 ETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQ 171
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 32.7 bits (74), Expect = 0.95
Identities = 12/51 (23%), Positives = 18/51 (35%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E + + E DEE ++E+ E EE EE+
Sbjct: 102 SVFKEKQMLSADVSEIEEQSNDSLSENDEEPSMDDEKTSAEAAREEFAEEK 152
Score = 30.4 bits (68), Expect = 4.6
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 430 MNHNRRWN-----ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
++ N+ W + D + + D D S E+ E EE E +E++
Sbjct: 50 LDANQVWWQVKLVLDSIDGDLIQGIQELKDPSLDGSTLNSSSGEESELEEAESVFKEKQM 109
Query: 485 EEEGEEEETETASSSTAKND 504
E E ++ S ++ND
Sbjct: 110 LSADVSEIEEQSNDSLSEND 129
Score = 29.3 bits (65), Expect = 9.9
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 441 GDSEYEDSDFDT----SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
G E +D D S +S EE E E++ + E EE+ + E E
Sbjct: 73 GIQELKDPSLDGSTLNSSSGEESELEEAESVFKEKQMLSADVSEIEEQSNDSLSENDEEP 132
Query: 497 SSSTAKNDPQMV 508
S K +
Sbjct: 133 SMDDEKTSAEAA 144
>gnl|CDD|217827 pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1
modulates DNA binding by region 2 and 4 when sigma is
unbound by the core RNA polymerase. Region 1.1 is also
involved in promoter binding.
Length = 79
Score = 29.9 bits (68), Expect = 0.96
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 442 DSEYEDSDFDT-SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
DSE D D + EE + EE DEE +E+ EEE E
Sbjct: 37 DSEQIDDIISMLEDMGIEVVEEADSEELDEETSSDEDAEEEAE 79
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEE 486
EE + +E +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEE 484
EE + EE +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 28.4 bits (64), Expect = 2.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEE 485
EE + E+ +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEE 487
EE D EE +EE +E+ EEE
Sbjct: 57 EEADSEELDEETSSDEDAEEEA 78
Score = 28.0 bits (63), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEE 487
EE + EE +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 28.0 bits (63), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 212 DSEYEDSDFDT-SDEEYDSSEEEEEEEDEEEEEEEEEGEEEET 253
DSE D D + EE + EE +EE +E+ EEE
Sbjct: 37 DSEQIDDIISMLEDMGIEVVEEADSEELDEETSSDEDAEEEAE 79
Score = 27.6 bits (62), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEET 493
EE + EE +EE +E+ EEE
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEE 492
EE + EE +EE +E+ EE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 27.2 bits (61), Expect = 8.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEE 490
E+ + EE +EE +E+ EE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 32.0 bits (73), Expect = 1.0
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 440 NGDSEYE---DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
NGD E + S + D E EE E + E + EE +E E ++EE
Sbjct: 83 NGDGYQEPDDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEEL 139
Score = 29.3 bits (66), Expect = 6.1
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSE-----EEEEEEEDEEEEEEEEEEEEEEEEEEGEE---- 490
+ + S E + E E + EE +E E+++EE E+ +E
Sbjct: 91 DDPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDF 150
Query: 491 -----EETETASSSTAKNDPQMV 508
E+ E + K Q +
Sbjct: 151 YENYNEKKEKTKAQNRKEAEQFL 173
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 31.7 bits (72), Expect = 1.1
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ + SD + +E + E+ +E E+ + EEE E+E+ + +E SS
Sbjct: 32 IQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQMSS 87
Score = 31.4 bits (71), Expect = 1.2
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE-EGEEEETETASSSTAK 502
E+ + + ++ +DE EE E E+ +E + + E S K
Sbjct: 25 EKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEK 73
Score = 29.4 bits (66), Expect = 5.2
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEE-EEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ + S++E EE E E+ +E E+ + E E E E S K QM
Sbjct: 26 KIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQM 85
Query: 508 VTVPI 512
+
Sbjct: 86 SSTSE 90
Score = 29.0 bits (65), Expect = 7.2
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E SD+E E E+ E E+ + EEE E+ +
Sbjct: 21 EELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
Score = 28.7 bits (64), Expect = 9.4
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP--- 511
E Y+ ++E E+ + EEE E+E+ E+ +E +++S + ++ +P
Sbjct: 47 ERYEQTKENSLIEK-VDSIEEEISEKEKVMSEKLKEPAQMSSTSEEEEKKAKLEEIPEDV 105
Query: 512 --ITLCL 516
I + L
Sbjct: 106 VSIMVAL 112
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 215 YEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
Y +S S S E+E +EDEE+ + E ++A S
Sbjct: 106 YWNSKKFVSAPVPHHSSEDENDEDEEDNADRAGIESGIDDSAPPS 150
Score = 29.6 bits (67), Expect = 3.4
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
Y +S S S E+E +E++E+ + E ++
Sbjct: 106 YWNSKKFVSAPVPHHSSEDENDEDEEDNADRAGIESGIDDSAP 148
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 32.3 bits (73), Expect = 1.1
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
Y E + +D +E EE E+ +EE EE E S
Sbjct: 162 YSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDIS 202
Score = 31.9 bits (72), Expect = 1.6
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 435 RWNARNGDSEYEDSDFDTSDEEYDSSEEEEEE----------------EEDEEEEEEEEE 478
R ++ S D+ T E S+ EE+++ E E + ++
Sbjct: 115 RMEQQHRSSGCTDTRRSTRYEPLTSAAEEKKKKLLELKKTREREERLYSERHIELQRFKD 174
Query: 479 EEEEEEEEEGEEEETETASSSTAKND 504
+E EE E+G +EE + + A D
Sbjct: 175 YKELEESEQGLQEEYTPSYAEEAVED 200
Score = 30.8 bits (69), Expect = 3.7
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E ++ +E EE E+ +EE EE E + A
Sbjct: 166 HIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAELY 211
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 30.7 bits (70), Expect = 1.1
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEE-EEEEEEGEEE 491
+SSEEE+ E EEE E E E EE +E E+
Sbjct: 84 ESSEEEQLRRIKELEEELREVEAEREEAVKEKEKL 118
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 32.2 bits (73), Expect = 1.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
D D D + E D +E E++D++ + E+ EE
Sbjct: 285 DDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
Score = 31.8 bits (72), Expect = 1.4
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND--------PQMVTV 510
+S+++E+ E EE++ +E E+++++ + E+ E+ SS + P + +
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEESGRSSVDEKTMFQRVDSKPNLTSR 342
Query: 511 PITLCLMI 518
L LM+
Sbjct: 343 RSLLTLML 350
Score = 30.7 bits (69), Expect = 3.3
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ D E+ E EED+ +E E+++++ + E+ EE
Sbjct: 278 TFPERTSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
Score = 30.7 bits (69), Expect = 3.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 217 DSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEE 250
D D D + E D +E E+D+++ + E+ EE
Sbjct: 285 DDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 32.4 bits (74), Expect = 1.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 437 NARNGD-SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+ N D S+ DFD +D++ D + E ED+ +E+ E+ + + EE E+E
Sbjct: 317 DTENEDESDDNADDFDDNDKKGDVGFDINAEVEDDPDEDAEDGGDGGDAEEFEAEKEP 374
Score = 29.3 bits (66), Expect = 8.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
D+ E E E ++ E+++EE + EE+ +
Sbjct: 153 DNKEAPETGREGDDGEDDDEEGSDGEEDGAKK 184
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 31.4 bits (71), Expect = 1.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
++E +E D ++E E EE+ +E + EE + AS
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEK 40
Score = 30.6 bits (69), Expect = 2.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E +E + ++E E EE+ +E++GEE++ + K D
Sbjct: 4 EHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKED 47
Score = 30.6 bits (69), Expect = 2.2
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 451 DTSDEEYD--SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D ++E+D S +E E EE+ +E++ EE++E E+EGE +E
Sbjct: 3 DEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKE 46
Score = 29.8 bits (67), Expect = 3.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
DE + ++E + EE+ +E++ EE++E E+E E K
Sbjct: 3 DEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELK 51
Score = 29.1 bits (65), Expect = 6.9
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
++E E + ++E E EE+ +E++ E ++ K
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEK 40
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 31.7 bits (72), Expect = 1.1
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
S E + E+E E + + EE+ E+ + E GE E ET + D PI
Sbjct: 214 SIEMQTAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPI 273
Query: 513 T 513
T
Sbjct: 274 T 274
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 30.7 bits (70), Expect = 1.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E ++ E E E E E E E E EE
Sbjct: 83 EERLAAARAAAEAERAELEAELAEAAAEAEALEE 116
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 32.1 bits (73), Expect = 1.2
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ E+EE EE E E+EEEE+ ++EE E++
Sbjct: 141 TREQEELEEALEFEKEEEEQRRLLLQKEEEEQQ 173
Score = 30.9 bits (70), Expect = 2.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
T ++E EE E E EEEE+ ++EEEE++ + + + A
Sbjct: 141 TREQEE---LEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 30.5 bits (69), Expect = 3.3
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S+ E+EE EE E E+EEEE+ ++E EE++
Sbjct: 140 STREQEELEEALEFEKEEEEQRRLLLQKEEEEQQ 173
>gnl|CDD|147374 pfam05160, DSS1_SEM1, DSS1/SEM1 family. This family contains the
breast cancer tumour suppressor BRCA2-interacting
protein DSS1 and its homologue SEM1, both of which are
short acidic proteins. DSS1 has been shown to be a
conserved component of the Rae1 mediated mRNA export
pathway in Schizosaccharomyces pombe.
Length = 63
Score = 29.2 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEE 487
EE+DE E+ E+ EEE E+E
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKE 33
Score = 27.3 bits (61), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
EE++E E+ E+ EEE E+E EE
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 26.9 bits (60), Expect = 7.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E+ +++ EE++E E+ E+ EEE E+E
Sbjct: 3 KEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNN 37
Score = 26.9 bits (60), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 235 EEEDEEEEEEEEEGEEEETETASSST 260
EE+DE E+ E+ EEETE + +
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKENGNN 37
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 31.0 bits (70), Expect = 1.2
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA---SSSTAKNDPQM 507
DE+ + +++ + E+ ++E + ++E E+ E ++ ++E + T P M
Sbjct: 75 DEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKLTKKTKSGQPLM 131
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 29.6 bits (67), Expect = 1.2
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
SE+ E+ EE E + E E E ++ + P
Sbjct: 18 KSEKLSAREQLSLFLEELEADAAALEAEA-EAAAAPEQPAAPPRRRP 63
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+EE E+E+++EE + E E+E E E+++ E
Sbjct: 81 KEEAEKEKEKEERFMKALAEAEKERAELEKKKAE 114
Score = 29.3 bits (66), Expect = 4.8
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEE-----------------E 465
+RS +++ R+ S S+ + DE+ +S+ E + +
Sbjct: 19 KSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLK 78
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+++E E+E+E+EE + E E+E E
Sbjct: 79 AKKEEAEKEKEKEERFMKALAEAEKERAE 107
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 30.5 bits (69), Expect = 1.3
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E E +F E++ +S +++ EE+ + EEEE+E EE EEE +
Sbjct: 78 EKEGDEFA-DKEKFVTSAYKKQLEENRKLEEEEKEREELEEEND 120
Score = 30.1 bits (68), Expect = 1.6
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
Query: 461 EEEEEEEEDEEE----------EEEEEEEEEEEEEEEGEEEETET 495
E+E +E D+E+ EE + EEEE+E EE EEE T
Sbjct: 78 EKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEENDVT 122
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 32.0 bits (72), Expect = 1.3
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE----TETASSST 500
+ ++S E +E+E +DE+ +E+ + E E++++G +EE TE AS
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDR 75
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.8 bits (70), Expect = 1.3
Identities = 12/60 (20%), Positives = 31/60 (51%)
Query: 440 NGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+G + + + ++ D E ++ +EE E D+E EE+++ ++ + + E+ E +
Sbjct: 21 DGKLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQL 80
Score = 29.3 bits (66), Expect = 4.2
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 28/114 (24%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEE----EDEEEEEEEEEEEEEEEEEEG----------- 488
YE D + + +Y E E ++E E++++ ++ +E+ E+EE
Sbjct: 30 RYEKKDIE-INTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATEN 88
Query: 489 ------------EEEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLF 530
E E ++SS + + T I L ++ + A ++
Sbjct: 89 NTVKATKKQLFSSEYEQTSSSSESTSEEETKKTSSILLPVLYAGLILLLAAGIY 142
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 30.9 bits (70), Expect = 1.3
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
Y +++ E+ +E ++ E E ASS K + V
Sbjct: 95 SYAANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVV 150
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.5 bits (71), Expect = 1.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
+++++E +E++E+ EE E + E++E + + Q P
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQP 194
Score = 29.6 bits (66), Expect = 5.8
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
+ ++ E +E++E+ EE E + E+ E+ + S + PQ
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 1.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+EEE E E EEEE E E+ + EET
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEET 430
Score = 32.0 bits (73), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +EE+ E+E EEEE E E+ +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKK 426
Score = 31.2 bits (71), Expect = 2.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
S+ +EEE E+E EEEE E E+ ++ ET +N
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEEN 438
Score = 29.7 bits (67), Expect = 6.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S +EEE ++E EEEE E E+ ++ E
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLE 428
Score = 29.7 bits (67), Expect = 8.5
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E + ++EE E+E EEEE E E+ T +
Sbjct: 388 YPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVE 432
Score = 29.3 bits (66), Expect = 10.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E+ + EE EE ++ EE E ++EE+
Sbjct: 605 DEFAVVDSEELRRAIEEWKKRFEERERRQKEED 637
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 31.3 bits (71), Expect = 1.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S+EE E+D +EE +E ++E +E +EE+ E
Sbjct: 2 SKEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQE 36
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 31.8 bits (73), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E E+ E EE EE+ EE E+G+ EE + +++ ++V
Sbjct: 88 AETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSRLTSEIV 132
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 32.4 bits (74), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET------ASSSTAK 502
S+E +S+ E + E+ E EE E E E E+ SS+T K
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGK 287
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 31.7 bits (72), Expect = 1.4
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
++ + + EE S + EE E+ +E + E EEE E EE E
Sbjct: 330 EERATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELL 387
Score = 31.0 bits (70), Expect = 2.7
Identities = 20/57 (35%), Positives = 24/57 (42%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
A + E E S+ + E D E EE DE + E EEE E EE E E
Sbjct: 333 ATDLAEEPESSELEELLSELDVEEAFEELLADEVLLDRESEEELEAALEELLELLDE 389
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
S +EEE +E+ EE E+ EE E E +E E +E+
Sbjct: 39 SKDEEERKEQMEELEKAREETERERKEREERKEK 72
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 31.9 bits (72), Expect = 1.5
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
++ FD + + E E+EE EEEEEE++E + E ++ ++SS ND
Sbjct: 289 WDQDLFDILNLILLKESQLLEPVLSEDEEVEEEEEEDDETDGLSPERDSLLSNSSVYSND 348
Query: 505 P 505
Sbjct: 349 S 349
Score = 31.1 bits (70), Expect = 2.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 228 DSSEEEEEEEDEEEEEEEEEGE--EEETETASSSTAKNDP 265
E+EE E+EEEE++E +G E ++ ++SS ND
Sbjct: 310 PVLSEDEEVEEEEEEDDETDGLSPERDSLLSNSSVYSNDS 349
Score = 30.0 bits (67), Expect = 6.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMV 520
E+EE E+EEEE++E + E + + SS +K D M + + V
Sbjct: 313 SEDEEVEEEEEEDDETDGLSPERDSLLSNSSVYSNDSSDSKEDSSMSMSNLARHSLTFV 371
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.1 bits (71), Expect = 1.5
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E +D + EE EE E EEE E + K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKK 194
Score = 30.8 bits (70), Expect = 1.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E ++ + +E EE E +EEE E E+ E+
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 30.4 bits (69), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
Y ++ + EE EE E +EEE EGE++E+
Sbjct: 156 YAEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.6 bits (67), Expect = 4.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
E ++ + EE EE E +EEE E E + +
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 28.8 bits (65), Expect = 9.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 226 EYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAK 262
E+ ++ EE EE E EEE E + K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKK 194
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 30.0 bits (68), Expect = 1.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 465 EEEEDEEEEEEEEEEEEEEE 484
E +EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 460 SEEEEEEEEDEEEEEEEEEE 479
+ E ++EE+ EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.9
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 470 EEEEEEEEEEEEEEEEEE 487
E ++EE++EEEEEE ++
Sbjct: 79 AEAKKEEKKEEEEEESDD 96
Score = 29.6 bits (67), Expect = 2.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 467 EEDEEEEEEEEEEEEEEEEEE 487
E ++EE++EEEEEE +
Sbjct: 75 AAAAAEAKKEEKKEEEEEESD 95
Score = 29.2 bits (66), Expect = 2.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 468 EDEEEEEEEEEEEEEEEEEE 487
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEE 483
++ E + EE++EEEEEE +++
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.8 bits (65), Expect = 3.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 466 EEEDEEEEEEEEEEEEEEEE 485
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 28.8 bits (65), Expect = 3.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 472 EEEEEEEEEEEEEEEEGEEE 491
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 28.8 bits (65), Expect = 3.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEG 488
+ ++EE++EEEEEE +++ G
Sbjct: 78 AAEAKKEEKKEEEEEESDDDMG 99
Score = 28.8 bits (65), Expect = 3.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 228 DSSEEEEEEEDEEEEEEEEE 247
++E ++EE+ EEEEEE ++
Sbjct: 77 AAAEAKKEEKKEEEEEESDD 96
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 31.7 bits (72), Expect = 1.5
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 451 DTSDEEYDSSEEEEEE-----EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+EE D E+EE + + E+ E + EE +EE EE E A A+ P
Sbjct: 96 GELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQP 155
Query: 506 QMVTVPI 512
+ T
Sbjct: 156 EEETEIE 162
Score = 31.3 bits (71), Expect = 1.8
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEE----------EEEEEEEEEEEEEEEGEE 490
G EEEE++ E EE + E+ E + EE +E
Sbjct: 79 GRENSFHDPLIDDPLFGGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVL 138
Query: 491 EETETASSSTAKNDPQMVTVPI 512
EE E ++ + Q
Sbjct: 139 EEPEPVAAKVPMAEVQPEEETE 160
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 32.1 bits (73), Expect = 1.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
+ D E+E E+E + ++EEE +E EE+ S
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANS 432
Score = 31.0 bits (70), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
E Y+ S ++ E EEE EE + +EE E
Sbjct: 757 AEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 31.1 bits (71), Expect = 1.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+EEE + DE E+ E+ +++ +++ EE
Sbjct: 32 TEEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 30.7 bits (70), Expect = 2.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
EEE + +E E+ E+ +++ ++EE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 29.5 bits (67), Expect = 4.5
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
EEE + +E E+ E+ +++ ++ EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 29.2 bits (66), Expect = 5.5
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E + +E E+ E+ +++ +++EE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEE 61
Score = 29.2 bits (66), Expect = 5.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EEE + +E E+ E+ +++ + +EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 28.8 bits (65), Expect = 9.1
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ EE + ++ E+ E+ +++ +++E
Sbjct: 32 TEEERQASADESSEDASEDGSDDDSDDDE 60
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 30.2 bits (69), Expect = 1.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E E+ D E EE E EE + +E E A
Sbjct: 81 ERPEDIDVERAEEALERAEERLAQAKDEREKARA 114
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/48 (27%), Positives = 15/48 (31%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
D E E ++ E E E E E EE ET T
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPE 243
Score = 30.9 bits (70), Expect = 3.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
T E + EE E EE E+ EEE +
Sbjct: 216 ATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 30.1 bits (68), Expect = 4.4
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+++ E E E E E EE E E E+ E ++ K
Sbjct: 203 PTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 30.1 bits (68), Expect = 4.4
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 451 DTSDEEYDSSEEEE-EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
T DE +E E E E EE E EE E+ EEE
Sbjct: 203 PTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
Score = 30.1 bits (68), Expect = 5.2
Identities = 13/51 (25%), Positives = 14/51 (27%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
E E E E E E EE E EE E + P
Sbjct: 202 EPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252
Score = 29.7 bits (67), Expect = 5.9
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
D +++ + + +E EE E EE E+ EEE +
Sbjct: 206 DEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 29.7 bits (67), Expect = 6.3
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ E + + + E EE E EE E+ EEE +
Sbjct: 203 PTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNK 248
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 31.3 bits (72), Expect = 1.6
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 678 LIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGF 715
++ I IL+ +L++ L++ L G IGF
Sbjct: 17 ILFILAILISTLLWADLDSPEVL-LLLLLTLGFGLIGF 53
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 31.5 bits (72), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEE 486
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 30.7 bits (70), Expect = 3.4
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 467 EEDEEEEEEEEEEEEEEEEEE 487
E DE E EE E EE +EE E
Sbjct: 241 EADEAEPEEAETEEAQEEAAE 261
Score = 30.0 bits (68), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEE 487
E ++ E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 29.6 bits (67), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEE 485
E +E + EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 29.6 bits (67), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 469 DEEEEEEEEEEEEEEEEEEGEEE 491
E +E E EE E EE +EE E+
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEK 262
Score = 29.2 bits (66), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEE 483
E +E E +E E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|152863 pfam12429, DUF3676, Protein of unknown function (DUF3676). This
domain family is found in eukaryotes, and is
approximately 230 amino acids in length.
Length = 230
Score = 31.4 bits (71), Expect = 1.6
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+S DSD D + EE E D E E + E+ EEE E + + S A
Sbjct: 89 ESMQRDSDVQPQDLQ----SEELTEVTDVEGSSESNDTEQPEEEGEANDRSGGSTSPVAA 144
Query: 502 KNDPQMVTVPI 512
+ T P+
Sbjct: 145 SLSMETATAPV 155
Score = 29.9 bits (67), Expect = 5.1
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 212 DSEYEDSDFDTSD------EEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDP 265
+S DSD D E E E D E+ EEE E + + S A
Sbjct: 89 ESMQRDSDVQPQDLQSEELTEVTDVEGSSESNDTEQPEEEGEANDRSGGSTSPVAASLSM 148
Query: 266 QMVTVPI 272
+ T P+
Sbjct: 149 ETATAPV 155
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.5 bits (72), Expect = 1.6
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ EEEEEE+ E EEEEEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEK 46
Score = 31.5 bits (72), Expect = 1.9
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+ EE+ EEEE+EE E EEEEEEE+EEE+ E
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 31.1 bits (71), Expect = 2.5
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ EEEEEEE E EEEEEEE+EEE++E+ G
Sbjct: 18 EKIEEEEEEEAPEAEEEEEEEDEEEKKEKPG 48
Score = 29.9 bits (68), Expect = 4.6
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE+ E+EEEEE E EEEEEEE+E E++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.9 bits (68), Expect = 5.0
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
EE+ EEE+EEE E EEEEEEE+EEE +E
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.6 bits (67), Expect = 7.6
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE EEEEEEE E EEEEEE +EEE + K
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDK 52
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 30.8 bits (70), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ EEE EE EE++EEEE + EE E +++E E
Sbjct: 137 EDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 30.8 bits (70), Expect = 1.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
D+EE+ EE+ +E + E EE + K +P
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPA 54
Score = 30.1 bits (68), Expect = 2.5
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 448 SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
S D + + ++EE+ EE+ +E + E EE +
Sbjct: 2 SFLDKLKKFFGYFPLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGN 61
Query: 508 V 508
V
Sbjct: 62 V 62
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 31.5 bits (72), Expect = 1.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
E EEEE++E++EE+++EE
Sbjct: 296 GGGEAAASAEEEEDDEDDEEDDDEETL 322
Score = 30.0 bits (68), Expect = 4.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
+++ EEEE+DE++EE+++EE +
Sbjct: 295 QGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 30.0 bits (68), Expect = 5.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ E EEEE++E++EE+++EE
Sbjct: 295 QGGGEAAASAEEEEDDEDDEEDDDEET 321
Score = 29.2 bits (66), Expect = 7.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 452 TSDEEYDSSEEE----EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
T DE + + + E EEEE++E++EE+ ++EET A
Sbjct: 279 TVDEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEED---DDEETLKA 324
>gnl|CDD|188409 TIGR03894, chp_P_marinus_1, conserved hypothetical protein,
TIGR03894 family. This protein family is restricted to
the Prochlorococcus and Synechococcus lineages of the
Cyanobacteria, and is sporadic in those lineages.
Members average 100 amino acids in length, including a
30-residue, highly polar, low complexity region
sandwiched between an N-terminal region of about 60
residues and a C-terminal [KR]VVR[KR]RS motif, both
well-conserved. The function is unknown [Hypothetical
proteins, Conserved].
Length = 95
Score = 29.4 bits (66), Expect = 1.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 477 EEEEEEEEEEEGEEEETETASSSTAKNDP 505
E+E ++EE EGE+ ET+ S S +++
Sbjct: 57 AEQEPDDEENEGEDSETKEDSESESESSR 85
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 471 EEEEEEEEEEEEEEEEEGEEEETETASSST 500
E+E ++EE E E+ E E+ E+E+ SS
Sbjct: 57 AEQEPDDEENEGEDSETKEDSESESESSRE 86
Score = 29.0 bits (65), Expect = 2.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E+E D+EE E E+ E +E+ E E E
Sbjct: 57 AEQEPDDEENEGEDSETKEDSESESESSRE 86
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 30.5 bits (69), Expect = 1.7
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE---EETETASSST 500
++ + D E E ++ ++ ++E++E ++ +E E+EE ++ +T T +
Sbjct: 97 KELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKKIWSVDTHTGFDKS 154
Score = 28.5 bits (64), Expect = 7.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+E SE EE + ++ ++E++E ++ +E E+EE + S
Sbjct: 96 KKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKKIWS 144
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 31.2 bits (71), Expect = 1.8
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E + E + ++ E+E E EE E+ E+E +
Sbjct: 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128
Score = 30.4 bits (69), Expect = 2.9
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E D E E E++ E E EEE E EEG+E ++
Sbjct: 123 EKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSK 164
Score = 30.0 bits (68), Expect = 4.3
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 409 RDLQKTIQDTT--GAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEE 466
L+ IQ+ + SA+ R A N + + ++ ++E EE E+
Sbjct: 62 SQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEK 121
Query: 467 EEDEEEEEEEEEEEEE----EEEEEGEEEETET 495
E E E+ +E E E E E EEE E
Sbjct: 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 31.6 bits (72), Expect = 1.8
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 190 EEVISNVKAIAKHL-----GIIKSSN------GDSEYEDSDFDTSDE---EYDSSEEEEE 235
EV+ + K L G I G ++Y ++ + ++E E EE EE
Sbjct: 470 AEVLDTTNFLFKQLMDEEVGEIDYDEEAQLKFGAAKYPENPDNKTEELLYEKLLIEEAEE 529
Query: 236 EEDEEEEEEEEEGEEEETETA 256
EE +EE E ++ ++E T A
Sbjct: 530 EEIDEEAEILDKAQQEATMVA 550
Score = 30.4 bits (69), Expect = 5.4
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 441 GDSEYEDSDFDTSDE-EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
G ++Y ++ + ++E Y+ EE EEE+ +EE E ++ ++E E
Sbjct: 502 GAAKYPENPDNKTEELLYEKLLIEEAEEEEIDEEAEILDKAQQEATMVAER 552
Score = 30.1 bits (68), Expect = 5.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+EE E+ EE EEEE +EE E ++ ++E T A
Sbjct: 513 KTEELLYEKLLIEEAEEEEIDEEAEILDKAQQEATMVA 550
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 31.8 bits (72), Expect = 1.8
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEE----------EEEEDEEEEEEEEEEEEEEEEEEGE-- 489
D E E+ + D SS EEE E+E +E E + + +EEE E
Sbjct: 471 DDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEIT 530
Query: 490 EEETETASSSTAKNDP 505
EEE A + +K
Sbjct: 531 EEENVLAKAVESKTSI 546
>gnl|CDD|177546 PHA03151, PHA03151, hypothetical protein; Provisional.
Length = 259
Score = 31.3 bits (70), Expect = 1.9
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS-TAKND 504
+D DF DE+ S + + + E EE+GE + S T
Sbjct: 102 KDFDFKPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEEDGEPYSKQKMSQPLTIDAK 161
Query: 505 PQMVTVPITLC 515
+ +T C
Sbjct: 162 TEEITSEEDCC 172
Score = 30.5 bits (68), Expect = 3.0
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 208 SSNGDSEYEDSDFDTSDEEYDSSEEEEEE-----EDEEEEEEEEEGEEEETETASSSTAK 262
S+ +++ +D DF DE+ S + + + E EE+ E S
Sbjct: 95 VSDSNND-KDFDFKPQDEDTSSDDSSAPDFITSLVSSDCEARGLSSSEEDGEPYSKQKMS 153
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 29.3 bits (66), Expect = 1.9
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
S EE + +EEEE+ E + +E EE+E+ E+ E+ E+ T +
Sbjct: 31 KSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMNLTEA 76
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 31.6 bits (71), Expect = 1.9
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEE----EEEEEEEEEEGEEEET 493
+R + ++DSD TSDE D ++ + E+E + E + + + +E EG
Sbjct: 423 SREDELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDNEEVAFDSDSQFDESEGNLRWK 482
Query: 494 ETASSSTAKNDPQMVTVPI 512
E +S A + I
Sbjct: 483 EGLASKLAYSQSGKRGRNI 501
Score = 31.6 bits (71), Expect = 2.2
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ ++ ++ + EE +E D E E EE ++EE E EE
Sbjct: 611 ENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERG 663
Score = 30.9 bits (69), Expect = 3.6
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
DS E EEE +D+E+ E+ E+EE + E E SS TA+N
Sbjct: 587 DSIEGEEELIQDDEKGNFEDLEDEENSSD--NEMEESRGSSVTAEN 630
Score = 30.9 bits (69), Expect = 3.9
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 410 DLQKTIQDTTGAYNRRRSSAMNHNRRW-NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
+ +K ++ ++ SS R+ DS + + DE+ + + E+EE
Sbjct: 554 NHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENS 613
Query: 469 DEEEEEE--------EEEEEEEEEEEEGEEEE 492
+ E EE E EE +E + E E EE
Sbjct: 614 SDNEMEESRGSSVTAENEESADEVDYETEREE 645
Score = 29.3 bits (65), Expect = 9.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEE-------EDEEEEEEEEEEEEEEEEEEGEEE 491
E +F+ ++E +SS+ E EE E+EE +E + E E EE +EE
Sbjct: 600 EKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEE 652
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 30.6 bits (70), Expect = 1.9
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 22/118 (18%)
Query: 394 IYAKCC--LCR----GCPTRP------RD-LQKTIQDTTGAYNRRRSSAMNHNRR--WNA 438
+Y++C L R CP R RD L+ TI AY S++ R A
Sbjct: 63 LYSQCFDELIRQVTIDCPERGLLLLRVRDELRMTIA----AYQTLYESSVAFGMRKALQA 118
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
G SE E + E + E E+ E E + E E+ EEEE + E + E A
Sbjct: 119 EQGKSELEQ---EIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIA 173
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 31.4 bits (71), Expect = 1.9
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 424 RRRSSAMNH-NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEE 478
RRR + R G DS+ + Y E+E + E + +E ++E
Sbjct: 253 RRRRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSDCETRKAKEVKKE 308
Score = 31.0 bits (70), Expect = 2.2
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 442 DSEYEDSDFDTSDEEYDS-SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
+S D D D E+ + E EE E E++ + E T+
Sbjct: 13 NSLSGDDDLSRGGNGDDGEINGEDPSQFSEIEEATETFPEKDVAVKFQTEVPTQNFGLPA 72
Query: 501 AKNDPQMVTVP 511
N +P
Sbjct: 73 GSNPSFFAKIP 83
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.8 bits (72), Expect = 1.9
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 451 DTSDEEYDSSEE--EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
+ S EE+ S++ E ++ E E E E +E + +EE E S D +
Sbjct: 616 EQSGEEFTDSQDVTEYMQQLLEREREATVERDELGARKNALDEEIERLSQPGGSEDQR-- 673
Query: 509 TVPITLCLMIMVGYIYGGAVLFSKWEDWNILDGSYF 544
+ + +GG +L ++D I D YF
Sbjct: 674 --------LNALAERFGGVLLSEIYDDVTIEDAPYF 701
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 30.7 bits (70), Expect = 2.0
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 448 SDFDTSDEEYDSSEEE-EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ + + + + E+ ++ EE EE E EE ++ E E ++ + KNDP+
Sbjct: 76 KELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPE 135
Query: 507 MV 508
+
Sbjct: 136 RI 137
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 31.4 bits (71), Expect = 2.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
EY S E+E++ +EDE + E+E + EE++
Sbjct: 368 EYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction
mechanisms].
Length = 268
Score = 31.1 bits (70), Expect = 2.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
TSD EY + E+E ++++ +E ++ E +E E E
Sbjct: 233 TSDAEYSAQEDEGQQQQAQENQQPEPKESTEGE 265
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 31.4 bits (72), Expect = 2.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
S EE+ E +E E EEEEE++EE++G
Sbjct: 62 SLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 30.6 bits (70), Expect = 3.8
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
EE +S EE+ E EE E EEEEE++EE+
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEK 88
Score = 29.8 bits (68), Expect = 6.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
S EE+ E E+ E EEEEE++EE++
Sbjct: 62 SLEEQRERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 31.3 bits (71), Expect = 2.1
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
DT E + + EE +D +++++ +E+E++E +EGE
Sbjct: 376 DTEIEVVTAQNVDPEEVKDRDQKQQYQEDEDDEHHQEGE 414
>gnl|CDD|226501 COG4014, COG4014, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 97
Score = 29.5 bits (66), Expect = 2.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E D SE +EE EED +E E +E+EE E
Sbjct: 54 EVVDKSEIKEEREEDIDEVVERIRKEKEEFE 84
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 30.7 bits (70), Expect = 2.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEE 482
++ ++E DE EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 30.3 bits (69), Expect = 3.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEE 483
+ ++E ++E EEE+ +EEEEE
Sbjct: 215 NHLQQESSLNDETEEEQPDEEEEE 238
Score = 29.2 bits (66), Expect = 7.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEE 486
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 31.5 bits (72), Expect = 2.2
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 216 EDSDFD-TSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTA 261
E D D DEE SS++E+E +EE E+ SSS A
Sbjct: 98 EKWDEDLFCDEELSSSDDEDEPPPPSPPPSQEE------ESQSSSQA 138
Score = 30.7 bits (70), Expect = 4.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 436 WNARNGDSEYEDSDFD-TSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
W N E D D DEE SS++E+E +EEE +
Sbjct: 93 WEEFN-----EKWDEDLFCDEELSSSDDEDEPPPPSPPPSQEEESQ 133
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.5 bits (67), Expect = 2.2
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 17/59 (28%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEE-----------------EEEEEEEEEGEEEE 492
D EE+D EEEE+EE E E +E+ E E + +E E+++
Sbjct: 24 DEYMEEFDKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKK 82
Score = 28.0 bits (63), Expect = 8.9
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEE-EEG 248
D EE+D EEEE+EE +E E E+G
Sbjct: 24 DEYMEEFDKREEEEKEEAKEARNEPDEDG 52
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 31.3 bits (71), Expect = 2.2
Identities = 15/36 (41%), Positives = 29/36 (80%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
T EEY S+ +E E++D +E+E+++E+E+E+E+E+
Sbjct: 874 TDLEEYLISQFQENEDDDADEDEDQDEDEDEDEDED 909
Score = 29.8 bits (67), Expect = 6.3
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEE 484
E+++ +EDE+++E+E+E+E+E+E
Sbjct: 885 QENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.8 bits (67), Expect = 6.7
Identities = 8/29 (27%), Positives = 25/29 (86%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
++ +E+++ +E+++++E+E+E+E+E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 31.5 bits (72), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EY E +E+E EE + E E+E+ E+ E EE
Sbjct: 257 EYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEY 293
Score = 30.7 bits (70), Expect = 3.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
EY + + + + + E+E+ E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRK 302
Score = 30.3 bits (69), Expect = 4.4
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E + +E EE + + E+E+ E+ E EE EE
Sbjct: 259 YGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
Score = 30.3 bits (69), Expect = 4.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E EE + E E+E+ E+ E EE + EE +
Sbjct: 263 YHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRK 302
Score = 29.5 bits (67), Expect = 7.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
EY ++ ++E + + E E+ED E+ E EE + EE
Sbjct: 257 EYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 31.0 bits (70), Expect = 2.3
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCL 516
D ++E EEDE+EEE ++ + EE E E + ++ + C+
Sbjct: 158 VDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYEWAVMEI----CM 213
Query: 517 MIMVGYIYGG 526
+ + I G
Sbjct: 214 VFLAQCIKTG 223
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 29.7 bits (67), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E EEEEEE E E +E+ E + + + D
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEID 91
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 31.0 bits (70), Expect = 2.4
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSD-------EEYDSSEEEEEEEDEE 240
++EE+I + AK G + E + + +E + E+E E
Sbjct: 195 LREELIEKIIKEAK--GKAAEMLREEESQRAKIGDGSVKLTEKAKELNKILEDESSSGES 252
Query: 241 EEEEEEEGEEEET 253
EEEEE+E EE+
Sbjct: 253 EEEEEDEDLEEDD 265
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 31.1 bits (70), Expect = 2.4
Identities = 12/60 (20%), Positives = 30/60 (50%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
A N E E + + + ++ + ++ + D ++E + E+E E++E E +++ A
Sbjct: 276 AENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAE 335
Score = 30.7 bits (69), Expect = 3.2
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
FD E S +E E++E + +++ E E+ ++ + + E + T + ++P
Sbjct: 306 FDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNP 361
Score = 29.6 bits (66), Expect = 7.5
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 438 ARNGDSEYEDSDF--DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ D + +DF D +D++ D ++++E ++ + + +E+++ E ++ E E
Sbjct: 226 QIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEK 285
Query: 496 ASSSTAKND 504
A KND
Sbjct: 286 AQIEIKKND 294
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 31.3 bits (71), Expect = 2.5
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE-------EEEEEEGEE 490
+R S E+ + + + Y+ EE + ++E E+E++E + E E ++
Sbjct: 647 SRAELSGLEERAVEDAPDPYEDLISLEETDTEDESTEDEDDELDRFDLHDSSGSEPEDDD 706
Query: 491 EETETASSSTAKND 504
E ST N
Sbjct: 707 ENNRVTLLSTLINQ 720
Score = 30.1 bits (68), Expect = 5.4
Identities = 15/75 (20%), Positives = 32/75 (42%)
Query: 200 AKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSS 259
+ +S S E+ + + + Y+ EE + E+E E+E+ E + + SS
Sbjct: 639 EMRTSLPQSRAELSGLEERAVEDAPDPYEDLISLEETDTEDESTEDEDDELDRFDLHDSS 698
Query: 260 TAKNDPQMVTVPITL 274
++ + +TL
Sbjct: 699 GSEPEDDDENNRVTL 713
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 30.6 bits (69), Expect = 2.5
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ D+DF EEE+E++++ +EE+E +++E + E
Sbjct: 79 CKLSDADFSLIKNHL---EEEKEKKKNLNKEEKEAKKKERAKRE 119
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 31.4 bits (71), Expect = 2.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 442 DSEYEDSDF--DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
D ED +F D D+E ++EE E D EE E + E
Sbjct: 181 DYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKALRRE 224
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 30.5 bits (69), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
S E+ + EEEE E + EE E+++E+E + + + AK PQM+
Sbjct: 83 SAEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKM-PQMI 137
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 31.0 bits (69), Expect = 2.6
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 454 DEEYDSSEEEEEEEEDEEE--EEEEEEEEEEEEEEEGEEEETETASSSTA 501
+E +E E+ E + EE E+ + EE + EE++ EE+ E A +S+A
Sbjct: 211 EEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSA 260
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 31.4 bits (71), Expect = 2.6
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
D D + E EE E + E+ G EE TETA +T +P
Sbjct: 695 DDGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEP 749
Score = 29.5 bits (66), Expect = 7.9
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSST 500
E D++ E+ EE E E EE TE ++ +
Sbjct: 712 ERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGS 757
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 31.2 bits (71), Expect = 2.7
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 145 GDFVPAQKSTDVQTAEETAE---LRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAK 201
G FV A + A A R+ C L + +LA+ + EE IS VK ++
Sbjct: 241 GTFVIANSLAESNKAVTAATNYNNRVVECRLAAI----VLAVKLGMSAEEAISKVKTLSD 296
Query: 202 HLGIIKSSNGDSEYEDSDFDTSD---EEYDSSEEEEE 235
G+ S G D + E ++EE EE
Sbjct: 297 VEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEE 333
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 31.3 bits (71), Expect = 2.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
RN EDSD DEE+ E E+E E + E ++ EEE +++
Sbjct: 436 RNSVMMDEDSD---DDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 29.8 bits (67), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 216 EDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
EDSD DEE+ E E+E E + E ++ EEE +
Sbjct: 443 EDSD---DDEEFQIPESEQEPETTKNETKDTAMEEEPQD 478
>gnl|CDD|221096 pfam11368, DUF3169, Protein of unknown function (DUF3169). Some
members in this family of proteins are annotated as
membrane proteins however this cannot be confirmed.
Currently there is no known function.
Length = 248
Score = 30.7 bits (70), Expect = 2.7
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 476 EEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGGAVLFSKWED 535
++EE+E+ +E + +T + V I L L ++G GA+LF
Sbjct: 79 YDKEEDEDAADELYRQANRNLEYATILFNVSSVLSFIALLLGYVLGLFSDGAILF----- 133
Query: 536 WNILDGSYFCFISLSTIGF 554
+I D L +
Sbjct: 134 ISIPDIL--LLFVLIILQI 150
Score = 29.2 bits (66), Expect = 6.9
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMVGYIYGG 286
Y + + + + EE+E+ +E + +T + V I L L ++G G
Sbjct: 70 YQALKYKALYDKEEDEDAADELYRQANRNLEYATILFNVSSVLSFIALLLGYVLGLFSDG 129
Query: 287 AVLFSKWEDWNILDGS 302
A+LF +I D
Sbjct: 130 AILF-----ISIPDIL 140
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 30.9 bits (70), Expect = 2.8
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEE 486
E++EE+EED EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.5 bits (69), Expect = 4.3
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+ EE+EE+ EE +E+EEE+GE+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.5 bits (69), Expect = 4.4
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEE 487
E++EE+E++ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 31.3 bits (71), Expect = 2.8
Identities = 8/47 (17%), Positives = 15/47 (31%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+ + + E E D + E ++E E A + A
Sbjct: 886 DSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAA 932
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 31.0 bits (69), Expect = 2.9
Identities = 17/68 (25%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 433 NRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
N R A E E + T ++E +E+E E + + + E+E+++ E+E+++ E+E+
Sbjct: 139 NARDRANKSGIELEQEEQKT-EQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEK 197
Query: 493 TETASSST 500
+T++ +
Sbjct: 198 QKTSNIAN 205
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 29.7 bits (67), Expect = 2.9
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
RNG Y +D T SS E+ E + ++ EE ++ + +
Sbjct: 97 RNGAYMYRKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 31.0 bits (70), Expect = 2.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
EE + DE+ EE EEEE ++ +T ST
Sbjct: 782 EENDLDEQLLLLPEELEEEETKKPVVLVDTIQDVRSTDV 820
Score = 29.4 bits (66), Expect = 9.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
EE D +E+ EE EEEE + +T + +
Sbjct: 782 EENDLDEQLLLLPEELEEEETKKPVVLVDTIQDVRSTD 819
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 30.7 bits (69), Expect = 3.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ E+EE E+EEE + E E + + + E +
Sbjct: 265 AQREQEETRTEDEEEPDSEAVEMYLDSDIDVSEVD 299
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 31.1 bits (70), Expect = 3.0
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
R LQK I++ + R+ R S D++ DT+ E+ + + E+E
Sbjct: 395 RVLQKKIENLQETFRRKERRLKEEKERLR-----SLQTDTNTDTALEKLEKALAEKERII 449
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETET 495
+ +E+ + +E E+EE E ++E E
Sbjct: 450 ERLKEQRDRDERYEQEEFETYKKEFED 476
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. This
family represents the C-terminus (approximately 500
residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have been
proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 30.6 bits (69), Expect = 3.0
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
G + +DF + + + +ED E E+ ++EE E G+EE
Sbjct: 21 PTVGGDKAAAADFAVMGGDDWGEDADLGLDEDGYLEGEDGLLDDEEGPEGGDEE 74
Score = 30.2 bits (68), Expect = 4.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 211 GDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
GD ED+D ++ Y E+ +++E E +EEG
Sbjct: 38 GDDWGEDADLGLDEDGYLEGEDGLLDDEEGPEGGDEEG 75
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 30.4 bits (69), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
EE + E E E+ E+ +++ +EE++ EE A+++TA
Sbjct: 124 EEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAANATA 170
>gnl|CDD|145463 pfam02323, ELH, Egg-laying hormone precursor. This family consists
of egg-laying hormone (ELH) precursor and atrial gland
peptides form little and California sea hare. The family
also includes ovulation prohormone precursor from great
pond snail. This family thus represents a conserved
gastropoda ovulation and egg production prohormone. Note
that many of the proteins present are further cleaved to
give individual peptides. Neuropeptidergic bag cells of
the marine mollusk Aplysia californica synthesise an
egg-laying hormone (ELH) precursor protein which is
cleaved to generate several bioactive peptides including
ELH, bag cell peptides (BCP) and acidic peptide (AP).
Length = 255
Score = 30.5 bits (68), Expect = 3.1
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 422 YNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEE-------------YDSSEEEEEEEE 468
+N+RR A R++ R DS E+S FD S+E+ Y + EE
Sbjct: 101 FNKRRQRASKRRLRFHKRRSDSADENSPFDLSNEDGAQRDLRAPRLRFYSLRKRAAGAEE 160
Query: 469 DEEEEEEEEE 478
E + E E
Sbjct: 161 QSEGQNPETE 170
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 30.6 bits (70), Expect = 3.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E E E EE EE+ EE +EEG+ EE + T + ++V
Sbjct: 90 GELEKRRERREEAEEKLEEAKEEGDAEEARKYAKRTVRVTKEIV 133
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 30.4 bits (69), Expect = 3.1
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETAS 497
DFD D E + E E E +E EE E + +
Sbjct: 130 DFDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN 178
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 31.1 bits (71), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
Y ++EEE E + +EE EEEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 30.5 bits (69), Expect = 3.3
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 267 MVTVPITLCLMIMVGYIYGGAVL-FSKWEDWNILDGSRSSSRSRSRQQTERSFTEKCKDY 325
+ + + +++G ++ G V + + Q K
Sbjct: 66 IGALFGLFLITLLLGRVFCGWVCPQGVLTELAEGL-----RNKLFKLQKAPWPLRK--LR 118
Query: 326 LRQFLAFLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYL 380
L+ LF I L++ Y+ G LG++ T + + LF ++
Sbjct: 119 LKLLKYLLFLLIL---LLLLYSWIGAYFAPVEPLLGRLLTGGFGRLAIGLFAVFA 170
>gnl|CDD|150313 pfam09605, Trep_Strep, Hypothetical bacterial integral membrane
protein (Trep_Strep). This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. It is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae
R6.
Length = 186
Score = 29.9 bits (68), Expect = 3.4
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 329 FLAFLFSNIGIICLVIG----YTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIG 384
F+ I L+ G +A IT +G I + + + G +L LS IG
Sbjct: 29 NPVFMLLAPAITALLGGIIFMLLVAKVPKFGAITIMGIIIGLLFFLTGHGWPMLILSIIG 88
Query: 385 DILA 388
++A
Sbjct: 89 GLIA 92
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 30.9 bits (70), Expect = 3.4
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 426 RSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
SS+ +G+S + D D S++ +++++ + EEEE+
Sbjct: 10 GSSSNGSGGLVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 30.8 bits (69), Expect = 3.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+SSE EE +E + E E E E +EE + +
Sbjct: 347 QSGPLESSESEETDEYAGPKGLPEPELELVELQEEDQRHGLKH 389
>gnl|CDD|215541 PLN03020, PLN03020, low-temperature-induced protein; Provisional.
Length = 556
Score = 30.8 bits (69), Expect = 3.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 189 QEEVISNVKAIAKHLG--IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEE 246
++ V+ VK AK + I K +G E D D EE+D+E+EE E
Sbjct: 30 KKSVLKKVKDKAKKIKDTITKHGHGHHHDEHRVPDDHDLY--------EEDDDEDEEMAE 81
Query: 247 EGEEEETETASSSTAKN 263
+ + S+ KN
Sbjct: 82 DPQIHGGSAYESAAIKN 98
Score = 30.4 bits (68), Expect = 3.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKN 503
+E D+ + EE+++E+EE E+ + S+ KN
Sbjct: 58 DEHRVPDDHDLYEEDDDEDEEMAEDPQIHGGSAYESAAIKN 98
>gnl|CDD|204975 pfam12598, TBX, T-box transcription factor. This domain family is
found in eukaryotes, and is typically between 77 and 89
amino acids in length. The family is found in
association with pfam00907. There are two completely
conserved residues (S and P) that may be functionally
important. T-box genes encode transcription factors
involved in morphogenesis and organogenesis of
vertebrates and invertebrates.
Length = 91
Score = 28.6 bits (64), Expect = 3.5
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
EE+ + + +++ E + + E + EE S +
Sbjct: 47 RLCPSEEDSDVESRDDKIPEADSDSEISDTTEERPGGENSPA 88
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 30.1 bits (68), Expect = 3.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 449 DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
DF + + D E E E+ +++EE E ++++E E
Sbjct: 67 DFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 30.5 bits (69), Expect = 3.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+DEEE E E E E++EE EE
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFS 167
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 30.6 bits (69), Expect = 3.8
Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 11/143 (7%)
Query: 371 AGMPLFLLYLSNIGDILAKSFKWIYAKCCLCRGCPTRPR--DLQKTIQDTTGAYNRRRSS 428
A L G I +++ ++ ++ L C R R Q+ + ++RSS
Sbjct: 2 AAAESAALLSHGCGPIRSRAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSS 61
Query: 429 AMNHNRRWNARNGDSEYED--------SDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
+ + NG E +SD++++ + + +E + E++ +
Sbjct: 62 N-SKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSK 120
Query: 481 EEEEEEEGEEEETETASSSTAKN 503
+ E+ + + E+ + KN
Sbjct: 121 DGEQLSDFQLEDLVGMIQNAEKN 143
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 30.3 bits (69), Expect = 3.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
E+ E E + E E E+E E+++ EE+ E S ++ Q++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLI 249
Score = 29.6 bits (67), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E E + E E E+E E+++EEE+ E +E
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQE 238
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 29.7 bits (67), Expect = 3.9
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + E+ EEE++ +EE+ ++EE+E++ +E++ +
Sbjct: 88 LTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQ 129
Score = 29.3 bits (66), Expect = 6.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E+ EEE E +EE+ ++EE+E++ +E+ +
Sbjct: 96 EQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 28.6 bits (64), Expect = 8.9
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE + + EEE+E ++E+ ++EE+E++ +E +++E
Sbjct: 89 TREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 28.6 bits (64), Expect = 9.4
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
YE + D+ E+EE E EEE+E +EE+ ++ E+E+
Sbjct: 73 YEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAK 124
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 28.7 bits (65), Expect = 4.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+EE E+E +E + E E +E E E G E E
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEK 69
Score = 27.9 bits (63), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 470 EEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+EE E+E EE + E E +E E E + S
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSR 64
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.7 bits (67), Expect = 4.0
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 437 NARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
A + + D +E + E+++ E +D EEE E ++ E+ + +
Sbjct: 73 YALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGKLVK------ 126
Query: 497 SSSTAKND---PQMVTVPITLCLMIM 519
S K D + +P I+
Sbjct: 127 IYSKMKPDAAAAILENLPDEEAAAIL 152
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 28.7 bits (64), Expect = 4.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ D+E + + E+E E E + + EE+ ++ EEE
Sbjct: 21 SIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNA 61
Score = 28.4 bits (63), Expect = 6.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ +S ++E ++E+E E +E + + EE+ + EEE+
Sbjct: 17 EKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESL 56
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 28.5 bits (64), Expect = 4.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 471 EEEEEEEEEEEEEEEEEGEEE 491
E +E + EE EEE E EGE E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 28.1 bits (63), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + E +E + EE EEE E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
Score = 28.1 bits (63), Expect = 6.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 464 EEEEEDEEEEEEEEEEEEEEE 484
E +E EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 4.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E EE+EE EE +++ +E E+ EE E E E A
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEA 367
Score = 29.6 bits (67), Expect = 7.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E EE+E ++ EEE ++ EE E E EE
Sbjct: 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELR 646
>gnl|CDD|233768 TIGR02185, Trep_Strep, conserved hypothetical integral membrane
protein TIGR02185. This family consists of strongly
hydrophobic proteins about 190 amino acids in length
with a strongly basic motif near the C-terminus. If is
found in rather few species, but in paralogous families
of 12 members in the oral pathogenic spirochaete
Treponema denticola and 2 in Streptococcus pneumoniae R6
[Cell envelope, Other].
Length = 189
Score = 29.6 bits (67), Expect = 4.1
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 329 FLAFLFSNIGIICLVIG----YTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIG 384
F A LFS GI ++G +A I G + + + + GM ++ S IG
Sbjct: 32 FFAHLFS-PGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFFLMGMYWPMIISSIIG 90
Query: 385 ----DILAKSFKW 393
DI+A + +
Sbjct: 91 GLLADIIASTGGY 103
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 30.6 bits (70), Expect = 4.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
D E D S+EE E+ E ++EEE+E+ +E E + E E + S + +
Sbjct: 162 DFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKE 212
Score = 29.8 bits (68), Expect = 7.4
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 188 VQEEVISNVKAIAKHLGIIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEE 247
V E+ + KHL + + D E D S+EE E+ + ++EEE+E+
Sbjct: 130 VNNEIERD-HLKKKHLPKLIKQYEKFGFGILKIDF---EIDDSKEELEKFEAQKEEEDEK 185
Query: 248 GEEEETETASSSTAKNDPQ 266
+E E A+ Q
Sbjct: 186 LAKEALEAMKKLEAEKKKQ 204
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 30.2 bits (69), Expect = 4.1
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMV 508
EE E+ E EE EE+ EE +EEG+ EE + +++ ++V
Sbjct: 41 AEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQRSSRLTDEIV 85
>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family.
Length = 850
Score = 30.5 bits (69), Expect = 4.2
Identities = 14/53 (26%), Positives = 18/53 (33%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
R+ DS+F+ DE D E E E + EE EE
Sbjct: 616 RSPPELPTDSEFEREDEPADPRPPPPVETEPPPRPPPPPETDREEMRRLPPEE 668
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 30.5 bits (70), Expect = 4.2
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 455 EEYD-------SSEEEEEEEEDEEEEEEEEEEEEEEEE------EEGEEEETETASSSTA 501
EE+D + + + +EDEEE+EE+EE EEE + E ++ + S
Sbjct: 459 EEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDKVKDVRLSHRL 518
Query: 502 KNDPQMVTVP 511
+ P +
Sbjct: 519 TDSPACLVAD 528
>gnl|CDD|237121 PRK12507, PRK12507, putative monovalent cation/H+ antiporter
subunit B; Reviewed.
Length = 332
Score = 30.0 bits (68), Expect = 4.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 3 SYRAEDYLREGSHDRGSP--FKEILSSVPGYGHIAPKTTLGKVATIFYAIVGIPLML 57
+ A+ Y+ S D G P IL+S GY TLG+ + IF A + + L+L
Sbjct: 125 QHVAKYYIENTSRDIGIPNFVTAILASYRGY------DTLGETSVIFIAGIAVLLLL 175
>gnl|CDD|114726 pfam06020, Roughex, Drosophila roughex protein. This family
consists of several roughex (RUX) proteins specific to
Drosophila species. Roughex can influence the
intracellular distribution of cyclin A and is therefore
defined as a distinct and specialised cell cycle
inhibitor for cyclin A-dependent kinase activity. Rux is
though to regulate the metaphase to anaphase transition
during development.
Length = 334
Score = 30.4 bits (68), Expect = 4.4
Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 34/107 (31%)
Query: 429 AMNHNRRWNARNGDSEYEDSDFDTSDEEYDS--------------SEEEEEEEEDEE--- 471
+++ RR NAR + D D E DS +EE +EEED +
Sbjct: 213 SISFARRANAR-----CNPTTDDEEDTEEDSPPPTARRGVRRTLFTEENTQEEEDADPDP 267
Query: 472 -EEEEEEEEEEEEEEEEGEEE-----------ETETASSSTAKNDPQ 506
E E+E+ ++ EE E ET SS T + Q
Sbjct: 268 IPEVEQEQPAPQQAEETAREAVNIPVDLPTPLETTNFSSYTPRKRQQ 314
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 30.3 bits (68), Expect = 4.6
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E DEE+ E+++ E G ++ + S++ A D
Sbjct: 606 VELDEEDTEDDDAVELPSTPSMGTQDGSPAPSAAPAGYD 644
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 29.9 bits (67), Expect = 4.6
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E+Y+ +E+ EE + E+EE +E EE E E EE +E
Sbjct: 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQER 171
>gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated.
Length = 494
Score = 30.1 bits (68), Expect = 4.6
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 331 AFLFSNIGIICLVIGYT----IAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDI 386
A LF +G + + +G T G G P+T L +T A + G+PLF ++ S I
Sbjct: 339 ALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTAL-ALTIGALSTVGIPLFNVFWSKFRII 397
Query: 387 LA---KSFKWIYA 396
LA + W A
Sbjct: 398 LAGLSAGYTWPVA 410
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 30.3 bits (69), Expect = 4.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 443 SEYEDSDFD--TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E+E F T + EEE+E + EEE++E + E +E
Sbjct: 469 PEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has putatively
been called NEFA-interacting nuclear protein NIP30,
however no reference could be found to confirm this.
Length = 99
Score = 28.5 bits (64), Expect = 4.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEE 481
E D EE E + + EE EE EE
Sbjct: 71 EFLDEVEESRRAAEKKRKREEAEELEE 97
Score = 28.1 bits (63), Expect = 5.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 451 DTSDEEYDSS----------EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
D EE++ +E+E E DE EE E++ + EE E EE
Sbjct: 46 DKKQEEFEEKFKLKNQFRGLDEDEVEFLDEVEESRRAAEKKRKREEAEELEE 97
>gnl|CDD|192511 pfam10279, Latarcin, Latarcin precursor. This family represents
the precursor proteins for a number of short
antimicrobial peptides called Latarcins. Latarcins were
discovered in the venom of the spider Lachesana
tarabaevi. Latarcins are likely to adopt amphipathic
alpha-helical structure in the plasma membrane.
Length = 64
Score = 27.5 bits (61), Expect = 4.8
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
Y SE+ E+ E DE E E+ E E+ + E TE A K
Sbjct: 1 TGYAVSEDLEDNELDELEAAAYLEDIAEALEKLEDFENTEEARGFFGK 48
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 28.6 bits (64), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E+ EE E E +EE E +++ E+ EEGE E+
Sbjct: 46 EKPVEEIERETDEELLEVKQDREQGEEGERIES 78
Score = 28.2 bits (63), Expect = 7.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
EE+ EE E E +EE E +++ E+ E E E+
Sbjct: 45 EEKPVEEIERETDEELLEVKQDREQGEEGERIES 78
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 30.0 bits (68), Expect = 4.8
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDP 505
+ D D D+ Y+ E+ DEE + EEEEEEE + + + NDP
Sbjct: 41 ELDSDQIDDLYERLEDAGISIVDEEGNPSSAQVVEEEEEEELDNDLS--VPPGVKINDP 97
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 28.8 bits (64), Expect = 4.8
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE------EEEEEEEEEEEEEGEEEE 492
D E E D E D + E EE +EE + ++ E+E+ ++++
Sbjct: 47 VRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGAPTPAGGDDLAEDEDIADDDDD 106
Query: 493 T 493
Sbjct: 107 V 107
>gnl|CDD|221116 pfam11457, DUF3021, Protein of unknown function (DUF3021). This is
a bacterial family of uncharacterized proteins.
Length = 134
Score = 28.8 bits (65), Expect = 4.9
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 658 HASDFEPKAFRFRVPIAVSFLIIISFILLGSLIFNKLENWTFLDGTF--FCFTSLG 711
S + P + I FLI L SLIF + E W+ L T F T L
Sbjct: 30 SPSIYLPSSPVSTKGILSVFLIGA-LFGLASLIF-ETERWSLLKQTLIHFILTLLT 83
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 28.8 bits (65), Expect = 4.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++E+ EE E ++ E++E EE E + +
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDS 115
Score = 27.7 bits (62), Expect = 9.9
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
++E EE E ++ E++E E E ++ S D
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIFTD 120
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 29.9 bits (67), Expect = 4.9
Identities = 16/49 (32%), Positives = 18/49 (36%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E D+ E + E E E E EE EEE EE EE
Sbjct: 105 EVNDNAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREE 153
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 30.3 bits (68), Expect = 5.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 459 SSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE--EETETASSSTAKND 504
+SEE++EEE D + +EE++ + E+ + A+ S++ ND
Sbjct: 11 TSEEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVSVDGAAVSSSGND 58
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 30.3 bits (69), Expect = 5.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 460 SEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E++ EE+++ EE ++EEEEEEEE + +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 29.4 bits (66), Expect = 5.1
Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 209 SNGDSEYEDSDFDTSD---EEYDSSEEEEEEEDEEEEEEEE 246
S D ++ D+ D D E+ S +++E++ E +E++E+
Sbjct: 124 SAEDQQWVDAKLDRIDELMEKLGLSYDDDEDDLERDEKQED 164
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 29.0 bits (65), Expect = 5.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
S EE + +E+ E E++ EE+E++E EE +E E E
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEE 65
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 30.3 bits (69), Expect = 5.3
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEE---EEEEEEEEEEEEGEEEETETASSSTA 501
D E D EE E++E E +E +E+EEE EE + EE E S T
Sbjct: 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQ 146
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 30.1 bits (67), Expect = 5.3
Identities = 15/86 (17%), Positives = 28/86 (32%)
Query: 421 AYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
+ R + + R A + E E+ + + D+ +E E E + + +
Sbjct: 358 GFWRIPAKLSSTQLRRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKA 417
Query: 481 EEEEEEEGEEEETETASSSTAKNDPQ 506
EE E E + K Q
Sbjct: 418 GLASPEEEALGEEEQKAPPKKKQLNQ 443
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.6 bits (67), Expect = 5.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+EEE EE+EE EE E +EE E
Sbjct: 226 GALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.6 bits (67), Expect = 5.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E +EEE EE+EE EE E EE
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAA 251
Score = 29.6 bits (67), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
+E+E EE+EE EE E +EE E
Sbjct: 225 GGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.2 bits (68), Expect = 5.4
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE---EEEEEEGEEEETETASSSTA 501
E + + S +E + E E +E+ +EE+ +++E EEE++ +E S T
Sbjct: 2569 LEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTD 2628
Query: 502 KND 504
+
Sbjct: 2629 DTN 2631
Score = 29.8 bits (67), Expect = 8.5
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP- 511
+E EEE++ E E ++ + +E+ S +ND V +
Sbjct: 2601 QQQERLQKEEEQKAYSQERLNREVSGTDDTNKNHNTGHDESNYGRYSNKRNDYGQVRLAG 2660
Query: 512 -ITLCLMIMVGYIY 524
+ + L + I+
Sbjct: 2661 GVIIGLSVFSSIIF 2674
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 30.3 bits (69), Expect = 5.4
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 438 ARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ G E + T E +EE EE E E E EE +E ++ E
Sbjct: 198 KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 28.4 bits (64), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + + + EE EEEE E+EE E+++EE E E
Sbjct: 18 EPVEYPLDVDFEELFVPEEEEAEDEELEDDDEEILVEGDE 57
Score = 28.4 bits (64), Expect = 6.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 447 DSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
D DF+ E + EEE E+EE E+++EE E +E
Sbjct: 25 DVDFE---ELFVPEEEEAEDEELEDDDEEILVEGDE 57
>gnl|CDD|236608 PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional.
Length = 182
Score = 29.4 bits (67), Expect = 5.5
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 421 AYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE 474
A N R R + E DFD +D D S E E E E+
Sbjct: 73 AINYLRK-----QGRRPPASDVDAEEAEDFDLADALRDISTPENELLSAELEQR 121
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 28.7 bits (64), Expect = 5.5
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 464 EEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+EEE+D E++EE+EE+ E+ ++ EEE
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 30.0 bits (68), Expect = 5.6
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
+ + E E E E E E + ++ E E E+ TA
Sbjct: 321 ELATELEAEGEAEFESTEGETTLAPSILQSDDSESPIHETEDAPTA 366
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 29.6 bits (67), Expect = 5.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 460 SEEEEEEEEDEEEEEE-----EEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVP 511
EEE E+EE EE +E EE E +E E E E E +K P++
Sbjct: 78 EEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELE-EERRDVFSKIKPEIKIKK 133
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 29.9 bits (68), Expect = 5.6
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEE-------EEEEEEEEEEEEEGEEEETETASSSTAK 502
D EE E E + + E++ E+EE E+ ++ A++ AK
Sbjct: 388 HDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Query: 503 NDPQMV 508
Sbjct: 448 GPDGET 453
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 29.9 bits (68), Expect = 5.6
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 178 IALLAMSFNLVQEEVISNVKAIAKHLG--IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEE 235
I +LA+S+ E + +LG +K ++ + +E
Sbjct: 170 IGMLALSYEKRGREALGLTPEPDGYLGEYYVKI---------------AKDLEEDPGNDE 214
Query: 236 EEDEEEEEEEEEGEEEE 252
EE EE E+ E G+EE
Sbjct: 215 EEAREEVEKLESGDEEA 231
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 29.6 bits (67), Expect = 5.7
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE----TASSSTA 501
EE + +EEE E + E+ +++ +E ++EE E A+++TA
Sbjct: 125 EEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAANATA 175
Score = 29.2 bits (66), Expect = 7.0
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 462 EEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
E+ E EE+E+ +EEE E + E+ + + K +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEE 162
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 29.5 bits (66), Expect = 5.7
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
S Y + S+ E S E+++ E+ E + ++ +++
Sbjct: 46 SYYLAEELSDSETEP-SIEDDQGLYTQLPPAEQVEGFIQGPLDDIADDDID 95
>gnl|CDD|221753 pfam12753, Nro1, Nuclear pore complex subunit Nro1. In fission
yeast, this protein is a positive regulator of the
stability of Sre1N, the sterol regulatory
element-binding protein which is an ER membrane-bound
transcription factor that controls adaptation to low
oxygen-growth. In addition, the fission yeast Nro1 is a
direct inhibitor of a protein that inhibits SreN1
degradation, Ofd1 (an oxoglutamate deoxygenase). The
outcome of this reactivity is that Ofd1 acts as an
oxygen sensor that regulates the binding of Nro1 to Ofd1
to control the stability of Sre1N. Solution of the
structure of Nro1 reveals it to be made up of a number
of TPR coils.
Length = 401
Score = 29.8 bits (67), Expect = 5.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E E E +E D +EEEEEEE E +E+
Sbjct: 216 ENFGKENEIDEGLDSDEEEEEEEVELDEK 244
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 30.0 bits (68), Expect = 5.8
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 415 IQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEE 474
QD Y R + R D E + EE D ++ EED + E
Sbjct: 375 HQDVQRKYERLKQKIKEQLER------DLEKNNERLAAIREEKD--RQKAAIEEDLQALE 426
Query: 475 EEEEEEEEEEEEEGEEEETETASS 498
+ ++ E + E EEE E
Sbjct: 427 SQLRQQLEAGKLEFNEEEYELELR 450
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 29.8 bits (68), Expect = 5.8
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 19/61 (31%)
Query: 452 TSDE--EYDSSEEEEEEEE-----------------DEEEEEEEEEEEEEEEEEEGEEEE 492
T+D+ Y + EEEEE + DEE+EE EEE E E E E
Sbjct: 253 TADDPTRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEAL 312
Query: 493 T 493
Sbjct: 313 A 313
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 29.7 bits (67), Expect = 5.8
Identities = 8/31 (25%), Positives = 24/31 (77%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+E++ + ++++++ EEE ++ ++++EEEE
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 29.3 bits (66), Expect = 8.2
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEE----------EETETASSSTAKNDPQM 507
++ EE +++E E+E EE E + +E ++ + K +
Sbjct: 105 QKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAE 159
Score = 28.9 bits (65), Expect = 8.9
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS---STAKNDPQMV 508
+ E ++ +++ ++ EEE ++ ++++EEE +++ E A K P+ V
Sbjct: 182 KRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPKPV 238
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 6.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 451 DTSDEEYDSSEEE---EEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D E SE E EE E E E EEE + E+++GE+
Sbjct: 146 MDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
Score = 29.6 bits (66), Expect = 7.3
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 405 PTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEE 464
T R +K ++ + + R+ + D E + S+ + SD E
Sbjct: 112 KTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSL 171
Query: 465 EEEEDEEEEEEEEEEEE 481
E E +EE + E+++ E+
Sbjct: 172 ENESEEELDLEKDDGED 188
Score = 29.6 bits (66), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGE 489
ED + S+ E EE E E E EEE + E+++ E+
Sbjct: 148 EDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGEDISH 191
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 30.0 bits (67), Expect = 6.0
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE-----EGEEEETETASSSTAKNDPQM 507
S E +S+ + E ++E++ ++ E + + E E+ S + + +
Sbjct: 904 SGSEANSARRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAV 963
Query: 508 VT 509
+
Sbjct: 964 AS 965
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 28.6 bits (63), Expect = 6.0
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +EE++E + E E +EE++E + E EG+EE+ E
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKE 131
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 29.4 bits (66), Expect = 6.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
D E E+E ++E+E E+ E+ E E + E+ E + A
Sbjct: 27 DVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAA 65
Score = 29.4 bits (66), Expect = 7.3
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 424 RRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+ R ++E E +D + + E + E E + E+ E + E+
Sbjct: 15 QERGIIPLRQVT---DVPETEQELAD-EEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQ 70
Query: 484 EEEEGEEEETE 494
E+E + E E
Sbjct: 71 IEQERAQWEEE 81
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 29.5 bits (67), Expect = 6.2
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+S+EE+EEE D E E EE +EEEE EE EE
Sbjct: 98 VLSNSDEEDEEENDIEIELSLEEYQEEEENEERREE 133
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 29.8 bits (67), Expect = 6.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEE 482
EY ++ +EE E E+EEEEEE EE
Sbjct: 421 EYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 29.4 bits (66), Expect = 9.2
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 213 SEYEDSDFDTSDEEYDSSEEEEEEEDEE 240
SEY+ T+DEE + +EEEEEE EE
Sbjct: 420 SEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 28.7 bits (65), Expect = 6.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 221 DTSDEEYDSSEEEEEEEDEEEEEEEEEG 248
DT E+YD EEE +EE + E +E+G
Sbjct: 24 DTYMEKYDKREEEAKEEAKARSEPDEDG 51
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 29.9 bits (67), Expect = 6.3
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 423 NRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE-- 480
RR + + +N +S E+ +++ + E+ + D + EEEE+
Sbjct: 20 IDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEEDGS 79
Query: 481 EEEEEEEGEEEETETASSSTAKNDPQMVTVP-ITLC 515
E + ++ ST K ++ + +
Sbjct: 80 ESISKLNVNSKKISLNQVSTQKWRKELDLLASLAYL 115
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 29.8 bits (67), Expect = 6.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA--KNDPQMVTV 510
+EEEE EE E E+ E + E E ++ E T+ ++ P V V
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDTSILQDVPMNVKV 468
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 29.3 bits (66), Expect = 6.6
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 425 RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
+ NRR SE E + +E + + EEE +++E E + ++E E
Sbjct: 55 KADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELRE 114
Query: 485 EEEGEEEETETASS-STAKNDPQMVTVP 511
+E E + + A P V P
Sbjct: 115 AQEAHERARQELLEAAAAPTAPPHVAAP 142
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 29.9 bits (67), Expect = 6.7
Identities = 15/87 (17%), Positives = 27/87 (31%)
Query: 414 TIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEE 473
+ + +R S R A +D + SD E + +
Sbjct: 263 MLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPVRRPRVK 322
Query: 474 EEEEEEEEEEEEEEGEEEETETASSST 500
E +EE + E +E ++ST
Sbjct: 323 HPEAGKEEPDGARNAEAKEPAQPATST 349
>gnl|CDD|221403 pfam12064, DUF3544, Domain of unknown function (DUF3544). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 198 to 216 amino acids in length. This domain is
found associated with pfam00628, pfam01753, pfam00439,
pfam00855.
Length = 207
Score = 29.2 bits (65), Expect = 6.8
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 443 SEYEDSD-FDTSDEEYDSSEEEEEEEEDEEEEEEE 476
S+ EDS+ D+SD EY S +E++ + E E+ ++E
Sbjct: 172 SDSEDSEKSDSSDSEYSSDDEQKAKNEQEDASDKE 206
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 29.2 bits (66), Expect = 6.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
+E EE EE E EEE E E+ E EE + K
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEK 42
>gnl|CDD|224147 COG1226, Kch, Kef-type K+ transport systems, predicted NAD-binding
component [Inorganic ion transport and metabolism].
Length = 212
Score = 29.3 bits (65), Expect = 7.1
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 16/177 (9%)
Query: 28 VPGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIMAHSFRFLYWKDFDFFTE--- 84
+ G+G +G++ GIP++++ D L
Sbjct: 26 IVGFG------RVGQIVARALLASGIPVVVI------DSDEDRVELLRELGLLVVLGDAT 73
Query: 85 YYDTKGVGNAEQIKPVPIWLCVFLVISYIIGGAFLFSHWEPW-GFPDSAYFCFITLTTIG 143
+ E+ + V + L +I+ A + TLTT+G
Sbjct: 74 REEVLEAAGIERARAVIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVG 133
Query: 144 FGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIA 200
+ VP + + A +L I + ++E ++ V +A
Sbjct: 134 ADEVVPPTFESALLLARAALVGLGGDSVEAILALIEIRRDRLADLEELELAGVSPLA 190
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 29.7 bits (67), Expect = 7.4
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 14/67 (20%)
Query: 398 CCLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEY 457
C+ R +P + Y N E SD ++ DEE+
Sbjct: 373 VCVTRRRRRKPYAVILNPFSPV--YTSL------------PTNELFEDVSSDSESDDEEF 418
Query: 458 DSSEEEE 464
DS + E
Sbjct: 419 DSDSDRE 425
>gnl|CDD|224532 COG1617, COG1617, Uncharacterized conserved protein [Function
unknown].
Length = 158
Score = 28.6 bits (64), Expect = 7.5
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 438 ARNGDSE--YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
A+ G++ D E + SE + E+ E +EE EE EE+ E E
Sbjct: 92 AKKGENFIVAVLVD-TPKMEGFKCSELRDFVLEEAEVLRITDEELEEAGEEDVPELVLER 150
Query: 496 ASSSTAK 502
+ A
Sbjct: 151 IALVEAF 157
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.9 bits (65), Expect = 7.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEE 483
+EEEEEE ++ EE+EEE
Sbjct: 149 TSPAEEEEEEGSGSGDDGEEDEEEGIV 175
Score = 28.9 bits (65), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEET 493
+S EEEEEE ++ EE+EEE +E T
Sbjct: 148 STSPAEEEEEEGSGSGDDGEEDEEEGIVYFVLQEST 183
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 29.4 bits (66), Expect = 7.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTA 501
+EE E E++ EE E E E+ EE+ E + E +E E S
Sbjct: 150 NEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKW 197
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 28.9 bits (65), Expect = 7.9
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E EEE EE EE EE E+ +EE + E EE
Sbjct: 14 EAEEEAEEILEEAREEAEKIKEEAKREAEE 43
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.1 bits (66), Expect = 8.0
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ E DF E +++ +E+++ EE++ +EE+++ EE
Sbjct: 82 DLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.7 bits (66), Expect = 8.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 440 NGDSEYEDS-DFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
NG ++ ED + T+ ++Y+ S+EE E E E E E ++ EE
Sbjct: 544 NGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 29.5 bits (67), Expect = 8.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEE 484
E +F D + EE EEE++D+ +++ +E+++E E
Sbjct: 347 EKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
>gnl|CDD|223642 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Transcription].
Length = 342
Score = 29.2 bits (66), Expect = 8.4
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
D+ DE E E + ++ E+E+ E E+
Sbjct: 8 ADAVRAYLDEIGRIPLLVREAEVELAKQLEDEQLLVELGED 48
>gnl|CDD|225721 COG3180, AbrB, Putative ammonia monooxygenase [General function
prediction only].
Length = 352
Score = 29.2 bits (66), Expect = 8.4
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 94 AEQIKPVPIWLCVFLVISYIIGGAFLFSHW 123
+ P+ + + L++S + G H
Sbjct: 1 MPERVPIILQWFILLLLSLLGGWLLTLLHV 30
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 29.5 bits (67), Expect = 8.4
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 22/122 (18%)
Query: 657 THASDFEPKAFRFRVPIAVSFLIIISFILLGSLIFNKLENWTFLDGTF---------FCF 707
T A K V V +L+++ L+ L +F
Sbjct: 147 TLAVL---KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFV 203
Query: 708 TSLGTIGFGELIPG--ESYDRTLRGNKNISVLVSSS-----YILVGMAVISMCFNLIQEE 760
S G G IP + + ++L+ S YILVG V +L+
Sbjct: 204 FSFGFHG---NIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGN 260
Query: 761 II 762
I+
Sbjct: 261 IL 262
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 29.1 bits (66), Expect = 8.5
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 305 SSRSRSRQQTERSFTEKCKDYL-----RQFLAFLFSNIGIICLVIGYTIAGYGNVAPITF 359
S SR+ +E+S KDYL R + + I G +A G++ P+
Sbjct: 1 MSLVDSRRSSEKSSRSTIKDYLQLTKPRV----ISLLL--ITAFAGMLLAPRGSINPLLL 54
Query: 360 LGKITTIAYAIAG 372
L + A G
Sbjct: 55 LLTLLGGALGAGG 67
>gnl|CDD|177113 MTH00038, COX2, cytochrome c oxidase subunit II; Provisional.
Length = 229
Score = 28.9 bits (65), Expect = 8.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 673 IAVSFLIIISFILLGSLIFNKLENWTFLDG 702
I ++ + I+ F L SL+F+ N FL+G
Sbjct: 29 IILTLITILVFYGLASLLFSSPTNRFFLEG 58
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.4 bits (67), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|184080 PRK13483, PRK13483, enterobactin receptor protein; Provisional.
Length = 660
Score = 29.4 bits (66), Expect = 8.6
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 13/53 (24%)
Query: 399 CLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDS--EYEDSD 449
C RGCP +T Y R + +++H RW+ D+ ++E+ D
Sbjct: 274 CGRRGCPE----------SSTTEY-ERSTVSLSHTGRWDFGTSDTYIQHEEFD 315
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 29.2 bits (66), Expect = 8.7
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 428 SAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
S + + G E S D E +EE +E ++ +EEE E+E+
Sbjct: 10 SLLEKAEEIRSEGGIERLERS-LDDLPELSQRNEEILDEIKELLDEEESEDEQ 61
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 28.3 bits (64), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
++D EE E E EEE EE+ + + E+E EG
Sbjct: 83 QFDKDEEIELELNLTEEELEEKYKGKLEKEYEG 115
>gnl|CDD|220705 pfam10344, Fmp27, Mitochondrial protein from FMP27. This family
contains mitochondrial FMP27 proteins which in yeasts
together with SEN1 are long genes that exist in a looped
conformation, effectively bringing together their
promoter and terminator regions. Pol-II is located at
both ends of FMP27 when this gene is transcribed from a
GAL1 promoter under induced and non-induced conditions.
The exact function of the Fmp27 protein is not certain.
Length = 861
Score = 29.3 bits (66), Expect = 8.8
Identities = 16/90 (17%), Positives = 32/90 (35%)
Query: 409 RDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEE 468
R + ++ + Y + + S +N+ ++ S +SD D S E+
Sbjct: 658 RGVSIKLRKWSAEYKKLKLSLLNNVKQARRFTLSSSASESDSDDDRVFPTSPSSSEDHWS 717
Query: 469 DEEEEEEEEEEEEEEEEEEGEEEETETASS 498
D + E E E ++ E+E
Sbjct: 718 DGRRLSDHTTSLEGETSESDDKLESEPFLK 747
>gnl|CDD|235887 PRK06925, PRK06925, flagellar motor protein MotS; Reviewed.
Length = 230
Score = 29.0 bits (65), Expect = 9.1
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 169 LCSLYLLFGIALLAMSFNLVQEEVISNVK--AIAKHLGIIKSSNGDSEYEDSDFDTSDEE 226
L +L L+F I L +MS I K A + G + S + +
Sbjct: 22 LITLILVFFILLFSMS-------QIDAQKFKAAVESF----QQRGSLGFLPSAIEFENPA 70
Query: 227 YDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMV 268
S +EE++E+ +E ++ EE E S TAK D + V
Sbjct: 71 ESSEDEEKQEDQLDELLKKVNEYIEENELKSVITAKRDERGV 112
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.5 bits (67), Expect = 9.4
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 455 EEYDSSEEEEEE--EEDEE--EEEEEEEEEEEEEEEEGEEEETETAS 497
E Y + EE EE EE E EE +E++EE E E EEE E S
Sbjct: 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional.
Length = 235
Score = 29.0 bits (66), Expect = 9.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEET 493
E +DE+E E + + + E+ EEE T
Sbjct: 140 EGDDEDELLEALIDADVDVEDVEEEEGT 167
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 27.4 bits (61), Expect = 9.5
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKND 504
+++E++ + + +E + ++ + G E TE K D
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter. The Folate-Biopterin
Transporter (FBT) Family (TC 2.A.71)The only
functionally characterized members of the family are
from protozoa and include FT1, the major folate
transporter in Leishmania, and BT1, the Leishmania
biopterin/folate transporter. A related protein in
Trypanosoma brucei, ESAGIO, shows weak folate/biopterin
transport activity [Cell envelope, Other].
Length = 468
Score = 29.4 bits (66), Expect = 9.5
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 336 NIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGM 373
N+G +C V GY + P L +TT+ Y ++ +
Sbjct: 298 NLGSLCGVGGYD--RFLKTFPYRLLFGVTTLLYTLSSL 333
>gnl|CDD|220779 pfam10488, PP1c_bdg, Phosphatase-1 catalytic subunit binding
region. This conserved C-terminus appears to be a
protein phosphatase-1 catalytic subunit (PP1C) binding
region, which may in some circumstances also be
retroviral in origin since it is found in both herpes
simplex virus and in mouse and man. This domain is found
in Gadd-34 apoptosis-associated proteins as well as the
constitutive repressor of eIF2-alpha
phosphorylation/protein phosphatase 1, regulatory
(inhibitor) subunit 15b, otherwise known as CReP.
Diverse stressful conditions are associated with
phosphorylation of the {alpha} subunit of eukaryotic
translation initiation factor 2 (eIF2{alpha}) on serine
51. This signaling event, which is conserved from yeast
to mammals, negatively regulates the guanine nucleotide
exchange factor, eIF2-B and inhibits the recycling of
eIF2 to its active GTP bound form. In mammalian cells
eIF2{alpha} phosphorylation emerges as an important
event in stress signaling that impacts on gene
expression at both the translational and transcriptional
levels.
Length = 307
Score = 29.2 bits (65), Expect = 9.5
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 209 SNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEE 244
S E S E+ SSE++ E +EEE
Sbjct: 106 EENVSSQEGPL--PSTPEHSSSEDDSWESSADEEES 139
>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many eukaryotic
proteins are anchored to the cell surface via
glycosylphosphatidylinositol (GPI), which is
posttranslationally attached to the carboxyl-terminus by
GPI transamidase. The mammalian GPI transamidase is a
complex of at least four subunits, GPI8, GAA1, PIG-S,
and PIG-T. PIG-U is thought to represent a fifth subunit
in this complex and may be involved in the recognition
of either the GPI attachment signal or the lipid portion
of GPI.
Length = 373
Score = 29.1 bits (66), Expect = 9.6
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 651 YRGGYCTHASDFEPKAFRFRVPIAVSFLIIISFILLGSLIFNKLENWTFLDGTF 704
S + I + FL+ + +LL S + +W FL+ T+
Sbjct: 186 LLLYIRFSKSSKSSSKLSKFLLILLLFLLTLLALLLLSFLITG--SWDFLEATY 237
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 28.8 bits (65), Expect = 9.9
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 16/97 (16%)
Query: 45 TIFYAIVGIPLMLLCLSNIGDIMAHSFRF-----LYWKDFDFFTEYYDTKGVG------- 92
+ V L+L +G+ + R L + ++DT VG
Sbjct: 46 LLIAVGVLQGLLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLT 105
Query: 93 -NAEQIKPVPIWLCVFLVISYI--IGGAFLFSHWEPW 126
+ +I+ + + L + + G F+ + W
Sbjct: 106 NDVSKIRDG-LGDKLGLFFQSLATVVGGFIVMFYYGW 141
>gnl|CDD|223826 COG0755, CcmC, ABC-type transport system involved in cytochrome c
biogenesis, permease component [Posttranslational
modification, protein turnover, chaperones].
Length = 281
Score = 28.9 bits (65), Expect = 9.9
Identities = 16/74 (21%), Positives = 20/74 (27%), Gaps = 18/74 (24%)
Query: 336 NIGIICLVIGYTIAG--YGNVA--------PITFLGKITTIAYA--------IAGMPLFL 377
G + L G I G + A P IT + YA L
Sbjct: 191 AAGFLILTGGVNIPGAIWAVEAWGTLWQWDPKETWALITWLVYAMYLHLRLMKGWFGLLF 250
Query: 378 LYLSNIGDILAKSF 391
L L + L F
Sbjct: 251 LALLLVRGFLVILF 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,317,880
Number of extensions: 4216185
Number of successful extensions: 45122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30610
Number of HSP's successfully gapped: 3389
Length of query: 790
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 685
Effective length of database: 6,280,432
Effective search space: 4302095920
Effective search space used: 4302095920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)