RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17959
(790 letters)
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 77.1 bits (190), Expect = 5e-18
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 101 PIWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAE 160
P + LV++ II G F E + S Y+ F+T+ T+G+GD+ P
Sbjct: 1 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP----------- 49
Query: 161 ETAELRIALCSLYLLFGIALLAMSFNLVQE 190
T ++ GI A++ + E
Sbjct: 50 STPLGMY-FTVTLIVLGIGTFAVAVERLLE 78
Score = 72.0 bits (177), Expect = 2e-16
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 511 PITLCLMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDI 570
P T L++++ I G F E + Y+ F++++T+G+GD P
Sbjct: 1 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPST--------- 51
Query: 571 GVQTLELSFILCAMYLMLGMALIAMCFNLMQE 602
L ++LG+ A+ + E
Sbjct: 52 -----PLGMYFTVTLIVLGIGTFAVAVERLLE 78
Score = 67.0 bits (164), Expect = 2e-14
Identities = 14/90 (15%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 672 PIAVSFLIIISFILLGSLIFNKLENWTFLDGTFFCFTSLGTIGFGELIPGESYDRTLRGN 731
P L++++ I+ G+ F+ +E ++ ++ F ++ T+G+G+ P
Sbjct: 1 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGM----- 55
Query: 732 KNISVLVSSSYILVGMAVISMCFNLIQEEI 761
+ + I++G+ ++ + E +
Sbjct: 56 -----YFTVTLIVLGIGTFAVAVERLLEFL 80
Score = 55.9 bits (135), Expect = 1e-10
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 37/117 (31%)
Query: 271 PITLCLMIMVGYIYGGAVLFSKWEDWNILDGSRSSSRSRSRQQTERSFTEKCKDYLRQFL 330
P T L++++ I G F E +
Sbjct: 1 PATRILLLVLAVIIYGTAGFHFIEGESWTV------------------------------ 30
Query: 331 AFLFSNIGIICLVIGYTIAGYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDIL 387
+ ++ + GYG+ +P T LG T+ + G+ F + + + + L
Sbjct: 31 SLYWT-------FVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
Score = 44.3 bits (105), Expect = 2e-06
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 30 GYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIM 67
GYG +P T LG T+ ++GI + + + + +
Sbjct: 43 GYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 47.7 bits (113), Expect = 2e-07
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 29/130 (22%)
Query: 66 IMAHSFRFLYWKDFDFFTEYYDTKGVGNAEQIKPVPIWLCVFLVISYIIGGAFLFSHW-- 123
++A+ W+D ++ + PV L + A L+
Sbjct: 3 VIAYGMPASVWRDLYYWA----------LKVSWPVFFASLAALFVVNNTLFALLYQLGDA 52
Query: 124 -----EPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEETAELRIALCSLYLLFGI 178
P GF + +F TL T+G+GD P A+ +L + G+
Sbjct: 53 PIANQSPPGFVGAFFFSVETLATVGYGDMHP------------QTVYAHAIATLEIFVGM 100
Query: 179 ALLAMSFNLV 188
+ +A+S LV
Sbjct: 101 SGIALSTGLV 110
Score = 37.7 bits (87), Expect = 8e-04
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 668 RFRVPIAVSFLIIISFILLGSLIFNK-------LENWTFLDGTFFCFTSLGTIGFGELIP 720
+ V A + + L +L++ F+ FF +L T+G+G++ P
Sbjct: 24 SWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHP 83
Query: 721 GESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEI 761
Y +++ I VGM+ I++ L+
Sbjct: 84 QTVYAH----------AIATLEIFVGMSGIALSTGLVFARF 114
Score = 34.2 bits (78), Expect = 0.015
Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 16/96 (16%)
Query: 507 MVTVPITLCLMIMVGYI--YGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKIT 564
++ + + + G + + +F +L+T+G+GD+
Sbjct: 29 FASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM------- 81
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLM 600
+ + + + +GM+ IA+ L+
Sbjct: 82 -------HPQTVYAHAIATLEIFVGMSGIALSTGLV 110
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 45.0 bits (106), Expect = 3e-06
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 102 IWLCVFLVISYIIGGAFLFSHW-----EPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDV 156
+ ++LV + + A+L P F D+ +F T+ TIG+G +P
Sbjct: 30 LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIP------- 82
Query: 157 QTAEETAELRIALCSLYLLFGIALLAMSFNLV 188
L L +L L G+ LA++ +L+
Sbjct: 83 -----IGPLANTLVTLEALCGMLGLAVAASLI 109
Score = 38.4 bits (89), Expect = 5e-04
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 668 RFRVPIAVSFLIIISFILLGSLIFNKLEN-------WTFLDGTFFCFTSLGTIGFGELIP 720
+ V I + + + L +L + + +F D FF ++ TIG+G+LIP
Sbjct: 23 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIP 82
Query: 721 GESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEI 761
+ + L GM +++ +LI
Sbjct: 83 IGPLAN----------TLVTLEALCGMLGLAVAASLIYARF 113
Score = 35.0 bits (80), Expect = 0.008
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 512 ITLCLMIMVGYIYGGAVLFSKWED-------WNILDGSYFCFISLSTIGFGDIVPGDKIT 564
ITL + + A+ + D + D +F +++TIG+G +
Sbjct: 28 ITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKL------- 80
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLM 600
+ L+ L + + GM +A+ +L+
Sbjct: 81 -------IPIGPLANTLVTLEALCGMLGLAVAASLI 109
Score = 32.6 bits (74), Expect = 0.048
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 9/77 (11%)
Query: 1 LWSYRAEDYLREGSHDRGSPFKEILSSV---------PGYGHIAPKTTLGKVATIFYAIV 51
+ A YL G + + GYG + P L A+
Sbjct: 38 TNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALC 97
Query: 52 GIPLMLLCLSNIGDIMA 68
G+ + + S I
Sbjct: 98 GMLGLAVAASLIYARFT 114
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 42.6 bits (100), Expect = 1e-05
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 19/108 (17%)
Query: 102 IWLCVFLVISYIIGGAFLFSHWEPWG-------FPDSAYFCFITLTTIGFGDFVPAQKST 154
L++ ++ G++L E +P + ++ T TT+G+GD P
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYP----- 62
Query: 155 DVQTAEETAELRIALCSLYLLFGIALLAMSFNLVQEEVISNVKAIAKH 202
T R + + ++ GI + + + + H
Sbjct: 63 ------VTLWGRC-VAVVVMVAGITSFGLVTAALATWFVGREQERRGH 103
Score = 39.5 bits (92), Expect = 1e-04
Identities = 15/108 (13%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 666 AFRFRVPIAVSFLIIISFILLGSLIF------NKLENWTFLDGTFFCFTSLGTIGFGELI 719
A +R A + L++I + L + T+ ++ + T+G+G+L
Sbjct: 2 ALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLY 61
Query: 720 PGESYDRTLRGNKNISVLVSSSYILVGMAVISMCFNLIQEEIIFMIKK 767
P + R V+ ++ G+ + + + ++
Sbjct: 62 PVTLWGR----------CVAVVVMVAGITSFGLVTAALATWFVGREQE 99
Score = 33.8 bits (77), Expect = 0.017
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 512 ITLCLMIMVGYIYGGAVLFSKWEDW-------NILDGSYFCFISLSTIGFGDIVPGDKIT 564
+++V + G+ L E ++ + +T+G+GD+
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL------- 60
Query: 565 GKNNDIGVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMR 609
+ + ++ G+ + + V + +
Sbjct: 61 -------YPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 33.0 bits (75), Expect = 0.029
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 29 PGYGHIAPKTTLGKVATIFYAIVGIPLMLLCLSNIGDIMAHSFR 72
GYG + P T G+ + + GI L + + +
Sbjct: 55 VGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 31.4 bits (71), Expect = 0.085
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 350 GYGNVAPITFLGKITTIAYAIAGMPLFLLYLSNIGDILAKSFK 392
GYG++ P+T G+ + +AG+ F L + + +
Sbjct: 56 GYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQ 98
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 218 SDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
SD + + + D + EE+E ++ E EEEG+E S + + + +T P
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPY 56
Score = 39.0 bits (91), Expect = 4e-04
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 512
E+ + ++ ++ EE+E ++ E EEEG+E S + + + +T P
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPY 56
Score = 34.8 bits (80), Expect = 0.011
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
S+ ED +FD D + +E ++ E+ EEE +E E E ++ T
Sbjct: 2 SDNED-NFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRIT 53
Score = 33.3 bits (76), Expect = 0.036
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+ ++ DFD +E+ + E EEE +E E E + ++
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQK 50
Score = 29.8 bits (67), Expect = 0.46
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 442 DSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
D+E D D E D ++ E E+E +E E E +
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQAN 48
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 40.8 bits (95), Expect = 4e-04
Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 23/176 (13%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLC 515
+ E+ + ++ E E E +EEE+ + E E + + +PI +C
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPI-VC 131
Query: 516 LMIMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKIT-----GKNNDI 570
I D +L+ + D PG K+ N
Sbjct: 132 DTI-------------TDRDAEVLE----YLQDIGLEYLTDGRPGFKLLFRFDSSANPFF 174
Query: 571 GVQTLELSFILCAMYLMLGMALIAMCFNLMQEEVVHKMRTCSEVTQRKSKQQQQQQ 626
L ++ G + + ++ RK + + +Q
Sbjct: 175 TNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQ 230
Score = 32.3 bits (73), Expect = 0.20
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQ 266
S +E E+ + ++ E E E +E E A + + + +
Sbjct: 71 SGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 31.1 bits (70), Expect = 0.45
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ + + + E E +EEE+ + + EEE+ +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 29.6 bits (66), Expect = 1.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 210 NGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEE 251
+G + + E +S E E DEEE+ + + EE+
Sbjct: 71 SGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 29.2 bits (65), Expect = 2.1
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 224 DEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQM 267
E+ + + +E E E E +EE + + S + +
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116
Score = 28.4 bits (63), Expect = 3.2
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 214 EYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEE 252
+ + + + E E +EEE+ + EEE
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEE 111
Score = 27.7 bits (61), Expect = 5.3
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPI 272
+ + E+ + +E E E E + + I
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 37.5 bits (87), Expect = 7e-04
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 422 YNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE 481
+ R ++ + + + + SD EE+ + ++ E EEE +E+
Sbjct: 35 FPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDAT-KVQREEQRKIDEAEPLTEEEIQEK 93
Query: 482 EEEEEEG 488
E +G
Sbjct: 94 ENLLSQG 100
Score = 34.8 bits (80), Expect = 0.006
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 453 SDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ E + + + EE+ + +E E EEE +E+E +
Sbjct: 61 NTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
Score = 33.3 bits (76), Expect = 0.024
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E D + + EE+ + +E E EEE E
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQE 92
Score = 32.9 bits (75), Expect = 0.028
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + + + + +E+ + +E E EEE +E E ++
Sbjct: 60 KNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
Score = 30.2 bits (68), Expect = 0.23
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 223 SDEEYDSSEEEEEEEDEEEEEEEEEGEEEETE 254
+ E + + + EE + +E E EEE E
Sbjct: 61 NTELGSDATKVQREEQRKIDEAEPLTEEEIQE 92
Score = 29.0 bits (65), Expect = 0.61
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 221 DTSDEEYDSSEEEEEEEDEEE---EEEEEEGEEEETE 254
+ + EE+ + DE E EEE +E E ++
Sbjct: 63 ELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 37.0 bits (85), Expect = 0.007
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + +++E + +E+E+ +EG ++E+
Sbjct: 254 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 36.3 bits (83), Expect = 0.010
Identities = 8/96 (8%), Positives = 27/96 (28%)
Query: 397 KCCLCRGCPTRPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEE 456
+ + + I T + + + ++ +++
Sbjct: 174 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQM 233
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ E +E + E+ E + + +E+E
Sbjct: 234 MEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Score = 35.5 bits (81), Expect = 0.021
Identities = 6/40 (15%), Positives = 18/40 (45%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E+ E+ E + + +E+E + +E+ + +
Sbjct: 242 QEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Score = 35.1 bits (80), Expect = 0.028
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E+E + +E+E+ +E ++E + E +
Sbjct: 261 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQ 294
Score = 34.7 bits (79), Expect = 0.038
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ + +E E + +E+E+ +E ++E
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 288
Score = 34.7 bits (79), Expect = 0.039
Identities = 6/39 (15%), Positives = 18/39 (46%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ + +E+E + +E+E+ +E ++E +
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291
Score = 34.3 bits (78), Expect = 0.043
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ + S +E ++ E+ E + + +E+E + + +
Sbjct: 235 EQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274
Score = 34.3 bits (78), Expect = 0.045
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +E+E + +E+E+ +E ++E + E
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 34.3 bits (78), Expect = 0.049
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E+ E + +E+E + +E+E+ +E +
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQ 283
Score = 33.9 bits (77), Expect = 0.059
Identities = 6/40 (15%), Positives = 17/40 (42%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
Y ++ E+ + + + +E+E + E+E+
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 278
Score = 33.6 bits (76), Expect = 0.081
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E + + +E+E + +E+E+ +E +
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284
Score = 33.2 bits (75), Expect = 0.096
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E+ ++ + +E++ + +E+E+ +E +E
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESR 287
Score = 32.8 bits (74), Expect = 0.13
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+ +E+E +E ++E + E + + +
Sbjct: 268 ALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 32.8 bits (74), Expect = 0.14
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 409 RDLQKTIQDTTGAYNR-RRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEE 467
R + +QD Y R D+ T + +E E E
Sbjct: 151 RLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVER 210
Query: 468 EDEEEEEEEEEEEEEEEEEEGEEEE 492
E + + E + + + E
Sbjct: 211 VKAESAQASAKMLHEMQRKNEQMME 235
Score = 32.8 bits (74), Expect = 0.15
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
E + E+E+ +E ++E + E ++ +T
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 32.4 bits (73), Expect = 0.18
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ +E E+ +E ++E + E ++ +T+
Sbjct: 266 TLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 32.0 bits (72), Expect = 0.26
Identities = 5/38 (13%), Positives = 19/38 (50%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E + + + +E+++ +E ++E + E + +
Sbjct: 261 KEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 31.6 bits (71), Expect = 0.36
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +E+ E++E +E ++ E+ E + +E E
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE 264
Score = 31.6 bits (71), Expect = 0.37
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
++E + + +E+E+ +E ++E + E ++ + +
Sbjct: 262 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 31.3 bits (70), Expect = 0.41
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E +++ E + + E E++E +E ++ E E +
Sbjct: 209 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 257
Score = 30.5 bits (68), Expect = 0.80
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E++E +E ++ E+ E + + +E+
Sbjct: 232 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 265
Score = 29.7 bits (66), Expect = 1.3
Identities = 13/79 (16%), Positives = 31/79 (39%)
Query: 416 QDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE 475
++ Y + + S + + + + E E E +S + E + + E+
Sbjct: 175 EEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMM 234
Query: 476 EEEEEEEEEEEEGEEEETE 494
E++E +E + E+ E
Sbjct: 235 EQKERSYQEHLKQLTEKME 253
Score = 29.3 bits (65), Expect = 1.7
Identities = 9/66 (13%), Positives = 23/66 (34%)
Query: 429 AMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
+ E E + + E + ++E+ E++E +E ++
Sbjct: 190 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 249
Query: 489 EEEETE 494
E+ E +
Sbjct: 250 EKMEND 255
Score = 27.0 bits (59), Expect = 8.5
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 231 EEEEEEEDEEEEEEEEEGEEEETE 254
E + +E+E+ +EG ++E+
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESR 287
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 33.7 bits (77), Expect = 0.026
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ E ++ E E +E+++ EE
Sbjct: 99 AQKMESNKENREAHLAAMLERLQEKDKHAEEV 130
Score = 33.3 bits (76), Expect = 0.034
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETA 496
E E E ++ EE + +E+ ++ +E A
Sbjct: 69 LAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREA 111
Score = 33.3 bits (76), Expect = 0.038
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEE----EEEEEEGEEEETETAS 497
D S EE E EE +E E + E E E + EE
Sbjct: 41 DPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Score = 32.9 bits (75), Expect = 0.044
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ E +E+ E E +E+++ EE
Sbjct: 100 QKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 32.9 bits (75), Expect = 0.046
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ +S++E E E +E+++ EE + +E +
Sbjct: 99 AQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 32.9 bits (75), Expect = 0.056
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
E + E E +E+++ EE + +E +E
Sbjct: 103 ESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 32.2 bits (73), Expect = 0.082
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E E E +E+++ EE +E E
Sbjct: 105 NKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 31.8 bits (72), Expect = 0.13
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
++ E E E E +E++ EE
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVR 131
Score = 31.4 bits (71), Expect = 0.17
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E E + E+ E E E ++ EE + +
Sbjct: 62 EAELLKHLAEKREHEREVIQKAIEENNNFIKMAK 95
Score = 31.4 bits (71), Expect = 0.18
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
EE +E E + E+ E E E ++ EE +
Sbjct: 55 EERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIK 92
Score = 31.0 bits (70), Expect = 0.23
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAK 502
E+ E E E ++ EE + +E+ ++ + A
Sbjct: 71 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAH 112
Score = 30.6 bits (69), Expect = 0.27
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+E E + E+ E E E ++ EE
Sbjct: 60 YQEAELLKHLAEKREHEREVIQKAIEENNNFIKMA 94
Score = 30.6 bits (69), Expect = 0.28
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 452 TSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ D S EE +++ + EE + +E E + + E
Sbjct: 35 SLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
Score = 30.6 bits (69), Expect = 0.34
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
++ + + E E E ++ EE + +E+ ++ E
Sbjct: 66 LKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKME 103
Score = 30.2 bits (68), Expect = 0.39
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+E E E +E+++ EE + +E +
Sbjct: 104 SNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 29.9 bits (67), Expect = 0.51
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
E + ++ E E E ++ EE + E
Sbjct: 63 AELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Score = 29.5 bits (66), Expect = 0.67
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+Y +E + E E E E ++ EE + + +
Sbjct: 58 RKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Score = 29.5 bits (66), Expect = 0.79
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+ E E E ++ EE + +E+ +
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Score = 29.1 bits (65), Expect = 0.97
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEE 483
E + ++ E +E+D+ EE + +E +E
Sbjct: 109 REAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 28.7 bits (64), Expect = 1.3
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
+ E+ + E E ++ EE + +E+
Sbjct: 66 LKHLAEKREHEREVIQKAIEENNNFIKMAKEKLA 99
Score = 27.9 bits (62), Expect = 2.8
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETET 495
+ EE ++ E EE + +E E E
Sbjct: 37 PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKRE 74
Score = 26.4 bits (58), Expect = 7.4
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 196 VKAIAKHLG------IIKSSNGDSEYE-----DSDFDTSDEEYDSSEEEEEEEDEEEEEE 244
V + K I+K + D E D S EE E EE + +E E
Sbjct: 5 VIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAE 64
Query: 245 EEEGEEEETE 254
+ E+ E
Sbjct: 65 LLKHLAEKRE 74
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 33.0 bits (74), Expect = 0.12
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQM 507
D + EE+ E +E+ +++E+E EE+ + ++ DP++
Sbjct: 55 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPEL 104
Score = 33.0 bits (74), Expect = 0.12
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 445 YEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ D + + + E +ED +++E+E+EE+ +++ + +
Sbjct: 53 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNS 99
Score = 30.6 bits (68), Expect = 0.75
Identities = 9/75 (12%), Positives = 26/75 (34%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITLCLMIMV 520
+ EE+ E +E+ +++ +E+E + S ++ + +
Sbjct: 55 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 114
Query: 521 GYIYGGAVLFSKWED 535
Y+ + +K
Sbjct: 115 QYVVTRDTIKAKGRS 129
Score = 29.5 bits (65), Expect = 1.5
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 457 YDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASS 498
+ EE+ E +E+ +++E+ +EE+ + S+
Sbjct: 53 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSA 94
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 30.5 bits (69), Expect = 0.51
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 441 GDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
D +Y + D + + + ++ +E EEEE ++ G +
Sbjct: 97 ADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDP 147
Score = 28.6 bits (64), Expect = 2.1
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 11/56 (19%)
Query: 450 FDTSDEEYDSSEEEE-----------EEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
T+D +Y +E + E+ +E EEEE ++ G + E
Sbjct: 94 IKTADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVE 149
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 27.9 bits (62), Expect = 0.62
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 102 IWLCVFLVISYIIGGAFLFSHWEPWGFPDSAYFCFITLTTIGF 144
I L ++ + + +P + ++ T TT+G+
Sbjct: 17 IVLLAGSYLAVLAERGAPGAQLI--TYPRALWWACETATTVGY 57
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 29.9 bits (67), Expect = 0.83
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 465 EEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITL 514
+ EEE + ++ EE+E E T KND + +
Sbjct: 64 NSIPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDC 113
Score = 29.9 bits (67), Expect = 0.85
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 439 RNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEE 482
R E F+ ++ + + EEE + ++ EE+E E
Sbjct: 49 RKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQEPELTST 92
Score = 29.5 bits (66), Expect = 1.2
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 219 DFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPITL 274
F+ ++ + + EEE + ++ EE+E E T KND + +
Sbjct: 59 TFNINNSI-PPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDC 113
Score = 29.1 bits (65), Expect = 1.7
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEE 487
++ + + EEE + ++ EE+E E
Sbjct: 59 TFNINNSIPPTFDGEEEPSQGQKVEEQEPELT 90
Score = 27.6 bits (61), Expect = 5.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
+ EEE + ++ EE+E E
Sbjct: 64 NSIPPTFDGEEEPSQGQKVEEQEPELTST 92
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 30.1 bits (67), Expect = 0.86
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 416 QDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEE 475
+G + R A + + + D EY E + DE +
Sbjct: 166 DTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLD-QAREYHEKLVEVAADFDENIMLK 224
Query: 476 EEEEEEEEEEE 486
E EE EEE
Sbjct: 225 YLEGEEPTEEE 235
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.1 bits (68), Expect = 0.93
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 444 EYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
DF + + + E ++ EE+ + +EE E+ +E
Sbjct: 96 NLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 28.8 bits (64), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEE 492
+E E + E +EEEEE +G+E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 28.0 bits (62), Expect = 2.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEE 487
+E E + E +EEEEE + +E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 27.2 bits (60), Expect = 3.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 463 EEEEEEDEEEEEEEEEEEEEEEEEEGE 489
+E E + E +EEEEE + +E
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 30.1 bits (67), Expect = 1.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 446 EDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEE 492
E + + + + +E +E E EE E E E E+ E+E + +
Sbjct: 28 EYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQ 74
Score = 28.9 bits (64), Expect = 2.2
Identities = 29/198 (14%), Positives = 53/198 (26%), Gaps = 12/198 (6%)
Query: 455 EEYDSSEEE-EEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQMVTVPIT 513
EE ++ +E +E E EE E E E E+ E E ++ + +
Sbjct: 33 EEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEI 92
Query: 514 LCLM-IMVGYIYGGAVLFSKWEDWNILDGSYFCFISLSTIGFGDIVPGDKITGKNNDIGV 572
++ + + T G I N G+
Sbjct: 93 RPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGG-IREVVFFVKGKNAYGI 151
Query: 573 QTLELSFILCAMYL--------MLGMALIAMCFNLMQEEVVHKMRTCSEVTQRKSKQQQQ 624
E A +A+ + ++++ + T R S Q
Sbjct: 152 LKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQ 211
Query: 625 QQNSLPNIYSQFNHISTG 642
N + H+ TG
Sbjct: 212 YVNKT-ESAVRITHLPTG 228
Score = 27.8 bits (61), Expect = 5.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 456 EYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETE 494
EY EE E +E +E E EE E E E E+ E
Sbjct: 28 EYAKIEEIENITNRIKETQEFIELLREEGENELEIEKYE 66
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 29.9 bits (66), Expect = 1.2
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 430 MNHNRRWNARNGDSEYEDSDFDTSD--EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ H + + NG+ + + + + + E E DE E+ E EE E
Sbjct: 168 VFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEA 226
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 29.1 bits (65), Expect = 1.9
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 1/106 (0%)
Query: 407 RPRDLQKTIQDTTGAYNRRRSSAMNHNRRWNARNGDSEYEDSDFDTSDEEYDSSEEEEEE 466
T + N ++ D + + T E E
Sbjct: 70 VEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIF 129
Query: 467 EEDEEEEEEEEEEEEEEEEEEGEEEETETASS-STAKNDPQMVTVP 511
+ + E+ E E + ++ + A + + + ++ V
Sbjct: 130 SQCDMITREQSSENSEIKIDDHASYIVDLARAIAYNTGERMLLIVE 175
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.5 bits (64), Expect = 2.7
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 443 SEYEDSDFDTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
E+ DF + + +E++++ +E+++ E E+ EE+
Sbjct: 87 KEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 27.2 bits (60), Expect = 3.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 300 DGSRSSSRS-RSRQQTERSFTEKCKDYLRQ 328
G R S S + RQ+ +R C+ YLRQ
Sbjct: 7 KGEREGSSSQQCRQEVQRKDLSSCERYLRQ 36
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 28.4 bits (62), Expect = 3.5
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 450 FDTSDEEYDSSEEEEEEEEDEEEEEEEEEEE 480
D + S + E E+ E+ E
Sbjct: 291 LDEEENGRVISVWKVEAEDKTEKLAAALEHH 321
Score = 28.0 bits (61), Expect = 4.9
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 466 EEEDEEEEEEEEEEEE 481
E ED+ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 8.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 470 EEEEEEEEEEEEEEEE 485
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 8.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 471 EEEEEEEEEEEEEEEE 486
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 27.2 bits (59), Expect = 8.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 472 EEEEEEEEEEEEEEEE 487
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.9 bits (58), Expect = 9.4
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 469 DEEEEEEEEEEEEEEE 484
+ E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 27.4 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEE-EEGEEE 491
D S EE+ + D +++ E E+E+ E ++ E+
Sbjct: 83 DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 117
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 28.1 bits (62), Expect = 3.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 454 DEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEE 490
D E + EE EE+ E+ + EE+ E EE
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEE 249
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 27.9 bits (62), Expect = 3.9
Identities = 3/34 (8%), Positives = 15/34 (44%)
Query: 455 EEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEEEG 488
E ++ +++ +++ ++ ++ EG
Sbjct: 81 ETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEG 114
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 26.1 bits (57), Expect = 4.9
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEEETETASSS 499
+ E + ++EE ++ +E ++G+ T T SS
Sbjct: 42 WHNDAENKKCTLDKEEAKKVADETAKDGKTGNTNTTGSS 80
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.8 bits (59), Expect = 7.1
Identities = 3/28 (10%), Positives = 17/28 (60%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEE 485
+ ++ ++DE + ++ +++E+ ++
Sbjct: 115 NETDTFGPGDDDEIQFDDIGDDDEDIDD 142
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 7.1
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 458 DSSEEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
S E ++ +E+ + ++EE EE ++E
Sbjct: 331 SSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Length = 509
Score = 27.5 bits (60), Expect = 7.2
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 7/146 (4%)
Query: 46 IFYAIVGIPLMLLCLSNIGDIMAHSFRFLYWKDFDFFTEYYDTKGVGNAEQIKPVPIWLC 105
I + +VGIPLM + + +G F K +G +P+ +
Sbjct: 45 IAFLLVGIPLMWIEWA-MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLW--IPLVVA 101
Query: 106 VF--LVISYIIGGAF-LFSHWEPWGFPDSAYFCFITLTTIGFGDFVPAQKSTDVQTAEET 162
++ + S+ +G A P P++ I F D + +
Sbjct: 102 IYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPS 161
Query: 163 AELRIA-LCSLYLLFGIALLAMSFNL 187
I L ++++ I + +S +
Sbjct: 162 LFAYIVFLITMFINVSILIRGISKGI 187
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein
HypC {Escherichia coli [TaxId: 562]}
Length = 90
Score = 25.5 bits (56), Expect = 8.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 461 EEEEEEEEDEEEEEEEEEEEEEEEEEEGEEE 491
E E + + + + E + GEE+
Sbjct: 60 NEAEARDTLDALQNMFDVEPDVGALLYGEEK 90
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 237
Score = 27.0 bits (59), Expect = 9.3
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 205 IIKSSNGDSEYEDSDFDTSDEEYDSSEEEEEEEDEEEEEEEEEGEEEETETASS 258
++ ++ + ++D ++ + + +EE + E +E E A S
Sbjct: 140 DLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAES 193
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 25.2 bits (55), Expect = 9.6
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 466 EEEDEEEEEEEEEEEEEEEEEEGEEEETETASSSTAKNDPQ 506
+ ED + + EEG+ E + K + +
Sbjct: 1 QPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYE 41
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.0 bits (57), Expect = 9.7
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 451 DTSDEEYDSSEEEEEEEEDEEEEEEEEEEEEEEEEE 486
+ E EEE ++ E + +++ E ++E
Sbjct: 97 SSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,053,990
Number of extensions: 151280
Number of successful extensions: 1306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 993
Number of HSP's successfully gapped: 155
Length of query: 790
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 697
Effective length of database: 1,130,706
Effective search space: 788102082
Effective search space used: 788102082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.0 bits)