BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17960
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G + Q AL+ T+ + AF +L PR ++ ++++ +L + N+ LSG
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV+IA L+ P++++LDEP S +D LL L RL T + TH E
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196
Query: 129 A 129
A
Sbjct: 197 A 197
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
N + LSGGQ +RV+IA L ++P II+ DEPT +D + L +L D +T+
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTV 199
Query: 120 IITTHYIEEAR 130
++ TH I AR
Sbjct: 200 VVVTHDINVAR 210
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
N + LSGGQ +RV+IA L ++P II+ D+PT +D + L +L D +T+
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 120 IITTHYIEEAR 130
++ TH I AR
Sbjct: 200 VVVTHDINVAR 210
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 10 LGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLS 67
+G + Q LF T+ K+ PR EA +L + L + +LS
Sbjct: 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 161
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQA+RV+IA L P I++ DEPTS +DP + + +LA+ + T+++ TH +
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEMG 220
Query: 128 EARQADMREL 137
AR+ R L
Sbjct: 221 FAREVGDRVL 230
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 10 LGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLS 67
+G + Q LF T+ K+ PR EA +L + L + +LS
Sbjct: 81 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLS 140
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQA+RV+IA L P I++ DEPTS +DP + + +LA+ + T+++ TH +
Sbjct: 141 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEMG 199
Query: 128 EARQADMREL 137
AR+ R L
Sbjct: 200 FAREVGDRVL 209
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 10/125 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQL--VLDLPPGNQLCST 65
+ F+ Q +LF + + F ++ I P+ ++ +DL++ +LD P T
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-RDLKIEHLLDRNP-----LT 127
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +RV++A L+ +P I++LDEP S +DP + L+ L +K T++ TH
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 126 IEEAR 130
EAR
Sbjct: 188 QTEAR 192
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+G + Q ALF+ T+ + +F + +P+ ++A +++L + L N+ LSG
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSG 148
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV++A L P +++ DEP + +D + ++ ++ T + TH EE
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208
Query: 129 A 129
A
Sbjct: 209 A 209
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPR----SSVEAVIKDLQL--VLDLPPGNQLC 63
+G + Q AL+ +++E +F KL + V V + LQL +LD P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RV+I TL+ P + +LDEP S +D L ++RL RT+I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 124 HYIEEA 129
H EA
Sbjct: 192 HDQVEA 197
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPR----SSVEAVIKDLQL--VLDLPPGNQLC 63
+G + Q AL+ +++E +F KL + V V + LQL +LD P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RV+I TL+ P + +LDEP S +D L ++RL RT+I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 124 HYIEEA 129
H EA
Sbjct: 192 HDQVEA 197
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RVSIA L PD+++ DEPTS +DP L + + +LA K T+++ TH
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHE 212
Query: 126 IEEAR 130
+ AR
Sbjct: 213 MGFAR 217
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
N + LSGGQ +RV+IA L ++P II+ D+PT +D + L +L D +T+
Sbjct: 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTV 199
Query: 120 IITTHYIEEAR 130
++ TH I AR
Sbjct: 200 VVVTHDINVAR 210
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSGGQARR 73
Q AL+ T+ + AF KL +PR ++ ++++ +L L N+ LSGGQ +R
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V++ ++ P + ++DEP S +D L L +L T I TH EA
Sbjct: 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPR----SSVEAVIKDLQL--VLDLPPGNQLC 63
+G + Q AL+ +++E +F KL + V V + LQL +LD P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RV+I TL+ P + +LD+P S +D L ++RL RT+I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 124 HYIEEA 129
H EA
Sbjct: 192 HDQVEA 197
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 18/139 (12%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRS-------SVEAVIKDLQLVLDLPPG- 59
S +G + QE LF +I+E A+ + + P S V V + + + P G
Sbjct: 449 SKIGTVSQEPILFS-CSIAENIAYGA---DDPSSVTAEEIQRVAEVANAVAFIRNFPQGF 504
Query: 60 ----NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD 115
+ LSGGQ +R++IA LL +P I++LDE TS +D + + L+RL D
Sbjct: 505 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL--MD 562
Query: 116 KRTIIITTHYIEEARQADM 134
RT+++ H++ + A+M
Sbjct: 563 GRTVLVIAHHLSTIKNANM 581
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRS-------SVEAVIKDLQLVLDLPPG- 59
S +G + QE LF +I+E A+ + + P S V V + + + P G
Sbjct: 418 SKIGTVSQEPILFS-CSIAENIAYGA---DDPSSVTAEEIQRVAEVANAVAFIRNFPQGF 473
Query: 60 ----NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD 115
+ LSGGQ +R++IA LL +P I++LDE TS +D + + L+RL D
Sbjct: 474 NTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL--MD 531
Query: 116 KRTIIITTHYIEEARQADM 134
RT+++ H + + A+M
Sbjct: 532 GRTVLVIAHRLSTIKNANM 550
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSGGQARR 73
Q A++ T+ E AF K+ P+ ++ ++ +L + N+ + LSGGQ +R
Sbjct: 91 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 150
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V++A ++ PD++++DEP S +D L + +L K T I TH EA
Sbjct: 151 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSGGQARR 73
Q A++ T+ E AF K+ P+ ++ ++ +L + N+ + LSGGQ +R
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR 149
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V++A ++ PD++++DEP S +D L + +L K T I TH EA
Sbjct: 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS GQ +RV+IA L+ P +++LDEPT+G+DP+ K L + TIII TH
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 126 IE 127
I+
Sbjct: 204 ID 205
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQL---CS 64
++ ++P+E + E F + Y S +E +++ + L G ++ S
Sbjct: 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL--GEKIKDRVS 145
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
T S G R++ IA L+ +P + +LDEPTSG+D L A K L + A + TI++++H
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ-ASQEGLTILVSSH 204
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ------LVLDLPP--- 58
S++G +PQ+ LF E TI ++ LY ++ E VIK + + LP
Sbjct: 93 SIIGIVPQDTILFNE-TIK-----YNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWD 146
Query: 59 ---GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD 115
GN+ LSGG+ +R++IA LL P I++ DE TS +D + F K + L
Sbjct: 147 TIVGNK-GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN- 204
Query: 116 KRTIIITTHYIEEARQAD 133
RT+II H + A+
Sbjct: 205 -RTLIIIAHRLSTISSAE 221
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 13 MPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK---DLQLVLDLPPG-NQLC----S 64
+ QE ALF TI E + + I R + A K + + LP G N L +
Sbjct: 497 VSQEPALFN-CTIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT 553
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R++IA L+ +P I++LDE TS +D + L++ A RT II H
Sbjct: 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAH 611
Query: 125 YIEEARQADM 134
+ R AD+
Sbjct: 612 RLSTIRNADL 621
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG----- 59
S + + QE LF+ +I+E + ++ + VE + + + +LP G
Sbjct: 1153 SQIAIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGGQ +R++IA L+ +P I++LDE TS +D + L+R + RT
Sbjct: 1212 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR--AREGRTC 1269
Query: 120 IITTHYIEEARQAD 133
I+ H + AD
Sbjct: 1270 IVIAHRLNTVMNAD 1283
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV-LDLPP-GNQLCSTLS 67
+ F E F E E AF K + R V V K ++ V LD +++ LS
Sbjct: 82 IAFQYPEDQFFAERVFDEV-AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLS 140
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDP------LLAHYFWKYLNRLAHTDKRTIII 121
GG+ RRV+IA ++H PDI++LDEP G+D L WK L +T+I+
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG-------KTVIL 193
Query: 122 TTHYIE 127
+H IE
Sbjct: 194 ISHDIE 199
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV-LDLPP-GNQLCSTLS 67
+ F E F E E AF K + R V V K ++ V LD +++ LS
Sbjct: 84 IAFQYPEDQFFAERVFDEV-AFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLS 142
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDP------LLAHYFWKYLNRLAHTDKRTIII 121
GG+ RRV+IA ++H PDI++LDEP G+D L WK L +T+I+
Sbjct: 143 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG-------KTVIL 195
Query: 122 TTHYIE 127
+H IE
Sbjct: 196 ISHDIE 201
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G + Q L T+ A +L N P+ V+ + +L ++ L + S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GQ +RV+IA L +P +++ DE TS +DP + L + TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD 202
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSGGQARR 73
Q AL+ T+ + AF KL +P+ ++ ++++ L L N+ LSGGQ +R
Sbjct: 91 QSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQR 150
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V++ ++ P + + DEP S +D L L +L T I TH EA
Sbjct: 151 VALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEA 206
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 195
Query: 124 HYIEEARQAD 133
H + + AD
Sbjct: 196 HRLSTVKNAD 205
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 201
Query: 124 HYIEEARQAD 133
H + + AD
Sbjct: 202 HRLSTVKNAD 211
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 197
Query: 124 HYIEEARQAD 133
H + + AD
Sbjct: 198 HRLSTVKNAD 207
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 140 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 197
Query: 124 HYIEEARQAD 133
H + + AD
Sbjct: 198 HRLSTVKNAD 207
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G + Q L T+ A +L N P+ V+ + +L ++ L + S LSG
Sbjct: 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GQ +RV+IA L +P +++ D+ TS +DP + L + TI++ TH ++
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ---LVLDLPPG-----N 60
++G + QE LF TI+E + + ++ +E +K+ ++ LP
Sbjct: 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
+ + LSGGQ +R++IA L+ +P I++LDE TS +D L++ + RT I
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTI 579
Query: 121 ITTHYIEEARQADM 134
+ H + R AD+
Sbjct: 580 VIAHRLSTVRNADV 593
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSK-----LYNIPRSSVEAVIKDLQLVLDLPP---- 58
+ LG + QE LF+ +I+E A+ I R++ EA I Q + LP
Sbjct: 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIH--QFIDSLPDKYNT 1163
Query: 59 --GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
G++ + LSGGQ +R++IA L+ P I++LDE TS +D + L++ +
Sbjct: 1164 RVGDK-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREG 1220
Query: 117 RTIIITTHYIEEARQADM 134
RT I+ H + + AD+
Sbjct: 1221 RTCIVIAHRLSTIQNADL 1238
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ---LVLDLPPG-----N 60
++G + QE LF TI+E + + ++ +E +K+ ++ LP
Sbjct: 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
+ + LSGGQ +R++IA L+ +P I++LDE TS +D L++ + RT I
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK--AREGRTTI 579
Query: 121 ITTHYIEEARQADM 134
+ H + R AD+
Sbjct: 580 VIAHRLSTVRNADV 593
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 17/138 (12%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSK-----LYNIPRSSVEAVIKDLQLVLDLPP---- 58
+ LG + QE LF+ +I+E A+ I R++ EA I Q + LP
Sbjct: 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIH--QFIDSLPDKYNT 1163
Query: 59 --GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
G++ + LSGGQ +R++IA L+ P I++LDE TS +D + L++ +
Sbjct: 1164 RVGDK-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK--AREG 1220
Query: 117 RTIIITTHYIEEARQADM 134
RT I+ H + + AD+
Sbjct: 1221 RTCIVIAHRLSTIQNADL 1238
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG----- 59
S +G +PQ+ LF + TI++ + VEA + + ++ P G
Sbjct: 128 SHIGVVPQDTVLFND-TIADNIRYGR--VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGG+ +RV+IA T+L +P II+LDE TS +D L ++ RT
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN--RTT 242
Query: 120 IITTHYIEEARQAD 133
I+ H + AD
Sbjct: 243 IVVAHRLSTVVNAD 256
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-----NQLCS 64
+ +P+ +F E T+ E + YN R E + +DL+ + L P QL
Sbjct: 83 IALVPEGRRIFPELTVYENLXXGA--YN--RKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111
TLSGG+ + ++I L P ++ DEP+ G+ P+L ++ + ++
Sbjct: 139 TLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKI 185
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLS 67
+G + Q L T+ A +L N P+ V+ + +L ++ L + S LS
Sbjct: 106 QIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLS 165
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GGQ +RV+IA L +P +++ D+ TS +DP + L + TI++ TH
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG-----NQ 61
+ Q + LF + TI+ A+ ++ R +E + ++ + ++P G +
Sbjct: 419 FALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
++LSGGQ +RV+IA LL +++LDE TS +D L+ L +T+++
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL--QKNKTVLV 534
Query: 122 TTHYIEEARQAD 133
H + QAD
Sbjct: 535 IAHRLSTIEQAD 546
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL------VLDLPPGNQLC 63
+G + Q AL+ T+ E AF + I + VE + ++ +LD P
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP----- 131
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV++A L+ P +++ DEP S +D L + L T + T
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVT 191
Query: 124 HYIEEA 129
H EA
Sbjct: 192 HDQAEA 197
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 13 MPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPPG-----NQLCS 64
+PQE LF TI E + + I ++ A I D ++ LP G +
Sbjct: 422 VPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDF--IISLPEGYDSRVERGGR 478
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
SGGQ +R+SIA L+ P +++LD+ TS VDP+ L R +T T I T
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR--YTKGCTTFIITQ 536
Query: 125 YIEEARQAD 133
I A AD
Sbjct: 537 KIPTALLAD 545
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 195
Query: 124 HYIEEARQAD 133
+ + AD
Sbjct: 196 ARLSTVKNAD 205
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 144 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKG--RTVIIIA 201
Query: 124 HYIEEARQAD 133
+ + AD
Sbjct: 202 ARLSTVKNAD 211
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL------VLDLPPG-- 59
+ +G + Q+ LF + T+ E L P ++ E V++ ++ +++LP G
Sbjct: 415 NQIGLVQQDNILFSD-TVKENI-----LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 60 ---NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
+ LSGGQ +R+SIA L++P I++LDE TS +D + L+ L +
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL--SKD 526
Query: 117 RTIIITTHYIEEARQAD 133
RT +I H + AD
Sbjct: 527 RTTLIVAHRLSTITHAD 543
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 31 FFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLD 90
F+ K VE K L+ + ++ LSGGQ + V I L+ +P +IV+D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 91 EPTSGVDPLLAHYFWKYL 108
EP +GV P LAH + ++
Sbjct: 179 EPIAGVAPGLAHDIFNHV 196
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 31 FFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLD 90
F+ K VE K L+ + ++ LSGGQ + V I L+ +P +IV+D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 91 EPTSGVDPLLAHYFWKYL 108
EP +GV P LAH + ++
Sbjct: 179 EPIAGVAPGLAHDIFNHV 196
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G + Q AL+ T E AF + + + ++++ +LD+ N LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
GQ +RV++A L+ P +++LDEP S +D
Sbjct: 144 GQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 13/134 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEA--VIKDLQLVLDLPPGN-----Q 61
+ ++PQ+ A + ++ E F +L RS ++A ++ DL++ LP G+ +
Sbjct: 68 VAYVPQQ-AWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEI---LPSGDRTEIGE 123
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLA-HYFWKYLNRLAHTDKRTII 120
LSGGQ +RVS+A + + DI + D+P S VD + H F + +T I
Sbjct: 124 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRI 183
Query: 121 ITTHYIEEARQADM 134
+ TH + Q D+
Sbjct: 184 LVTHSMSYLPQVDV 197
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCS----TLSGGQARRVSIAVT 79
T+ E AF ++ + S + IK VL+L + L + LSGGQ +R++IA
Sbjct: 98 TVEEDVAFSLEIMGLDESEMRKRIKK---VLELVGLSGLAAADPLNLSGGQKQRLAIASM 154
Query: 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
L + LDEP S +DP ++ L L + K II+ TH +E
Sbjct: 155 LARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGK-GIILVTHELE 201
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYL 108
LSGGQ + V I L+ +P +IV+D+P +GV P LAH + ++
Sbjct: 151 AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHV 196
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 9/127 (7%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIP--RSSVEAVIKDLQLVLDLPPGNQLCSTLSGG 69
F+P+EI + + ++ + + LY + ++ + ++ ++ VLDL + LS G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVE-VLDL---KKKLGELSQG 137
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
RRV +A TLL + +I VLD+P +D H K + + +K +II++ EE
Sbjct: 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSR--EEL 194
Query: 130 RQADMRE 136
D+ E
Sbjct: 195 SYCDVNE 201
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLS 67
+ + I+ + T+ E FF NIP ++ + LQ++ D+ G Q +TLS
Sbjct: 756 YKGKNISDILDMTVDEALEFFK---NIP-----SIKRTLQVLHDVGLGYVKLGQPATTLS 807
Query: 68 GGQARRVSIAVTLLH---SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GG+A+R+ +A L + +LDEPT G+ + L+RL T+I+ H
Sbjct: 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN-TVIVIEH 866
Query: 125 YIEEARQAD 133
++ + AD
Sbjct: 867 NLDVIKNAD 875
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 20 FEEFTISETFAFFSKLYNIPRSS------VEAVIKDLQLVLDLPPG----NQLCSTLSGG 69
F E +ISE F L R ++ + K L+ ++D+ ++ +TLSGG
Sbjct: 409 FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSATTLSGG 468
Query: 70 QARRVSIAVTLLH--SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
+++R+ +A + + I VLDEPT G+ P K L +L T+I+ H E
Sbjct: 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN-TVIVVEHDEE 527
Query: 128 EARQAD 133
R AD
Sbjct: 528 VIRNAD 533
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +RV+IA TLL DI +LDEP++ +D + + L +++T ++ H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
LSGG+ +RV+IA LL DEP+S +D + + RLA+ K +++
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +RV+IA TLL DI +LDEP++ +D + + L +++T ++ H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
LSGG+ +RV+IA LL DEP+S +D + + RLA+ K +++
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +RV+IA TLL DI +LDEP++ +D + + L +++T ++ H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 43 VEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL 100
+E V+K L+L VL+ + LSGG+ +RV+IA LL + DEP+S +D
Sbjct: 139 LEEVVKALELENVLE-----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 101 AHYFWKYLNRLAHTDKRTIII 121
+ + RL+ K +++
Sbjct: 194 RLNAARAIRRLSEEGKSVLVV 214
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLS 67
+ + IA + T+ + FF+ + I R L+ + D+ G Q +TLS
Sbjct: 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRK--------LETLYDVGLGYMKLGQPATTLS 545
Query: 68 GGQARRVSIAVTLLHSPD---IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GG+A+RV +A L + + +LDEPT+G+ L+RL T+++ H
Sbjct: 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-TVLVIEH 604
Query: 125 YIEEARQAD 133
++ + AD
Sbjct: 605 NLDVIKTAD 613
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAV-----IKD----LQLV-LDLPPGNQLCS 64
+ I +++E AFF L + + A I+D LQ V LD ++
Sbjct: 142 KHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAG 201
Query: 65 TLSGGQARRVSIAVTLLH--SPDIIVLDEPTSGV 96
TLSGG+A+R+ +A + + + VLDEP+ G+
Sbjct: 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGL 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G + Q AL+ T E AF + + + ++++ +LD+ N LSG
Sbjct: 84 IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
Q +RV++A L+ P +++LDEP S +D
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLD 172
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL----VLDLPPGNQLCST 65
+GF+PQ+ ALF ++ A+ + +L +LD P +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----AR 126
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +RV++A L+ P +++LDEP S VD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG +RV IA+ LL P +++LDEPTS +D L + + L L K T+I TH
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 126 IEEARQ 131
I A +
Sbjct: 215 IAVAAE 220
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R++IA LL I++LDE TS +D L+ L RT ++ H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR 538
Query: 126 IEEARQAD 133
+ QAD
Sbjct: 539 LSTIEQAD 546
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLS 67
+ + IA + T+ + FF+ + I R L+ + D+ G Q +TLS
Sbjct: 796 YKGKNIAEVLDMTVEDALDFFASIPKIKRK--------LETLYDVGLGYMKLGQPATTLS 847
Query: 68 GGQARRVSIAVTLLHSPD---IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GG+A+RV +A L + + +LDEPT+G+ L+RL T+++ H
Sbjct: 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD-TVLVIEH 906
Query: 125 YIEEARQAD 133
++ + AD
Sbjct: 907 NLDVIKTAD 915
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAV-----IKD----LQLV-LDLPPGNQLCS 64
+ I +++E AFF L + + A I+D LQ V LD ++
Sbjct: 444 KHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAG 503
Query: 65 TLSGGQARRVSIAVTLLH--SPDIIVLDEPTSGV 96
TLSGG+A+R+ +A + + + VLDEP+ G+
Sbjct: 504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGL 537
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R++IA LL I++LDE TS +D L+ L RT ++ H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR 538
Query: 126 IEEARQAD 133
+ +AD
Sbjct: 539 LSTIEKAD 546
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLSGGQ 70
+ IA + T+ + FF+ + I R L+ + D+ G Q +TLSGG+
Sbjct: 799 KNIAEVLDXTVEDALDFFASIPKIKRK--------LETLYDVGLGYXKLGQPATTLSGGE 850
Query: 71 ARRVSIAVTLLHSPD---IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
A+RV +A L + + +LDEPT+G+ L+RL + T+++ H ++
Sbjct: 851 AQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV-DNGDTVLVIEHNLD 909
Query: 128 EARQAD 133
+ AD
Sbjct: 910 VIKTAD 915
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 24 TISETFAFFSKLYNIPRSSVEA-----VIKD----LQLV-LDLPPGNQLCSTLSGGQARR 73
+++E AFF L + + A I+D LQ V LD ++ TLSGG+A+R
Sbjct: 453 SVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQR 512
Query: 74 VSIAVTLLH--SPDIIVLDEPTSGV 96
+ +A + + + VLDEP+ G+
Sbjct: 513 IRLATQIGSRLTGVLYVLDEPSIGL 537
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
++LSGGQ + + IA + +I+LDEPTS +D L LA + T++ TT
Sbjct: 127 TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTT 186
Query: 124 H 124
H
Sbjct: 187 H 187
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
S LSGG ++++A +L + DI++LDEPT+ +D + + YLN
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 586
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ ++ +A P +IVLDEPT+ +D
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
S LSGG ++++A +L + DI++LDEPT+ +D + + YLN
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ ++ +A P +IVLDEPT+ +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
S LSGG ++++A +L + DI++LDEPT+ +D + + YLN
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ ++ +A P +IVLDEPT+ +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 50 LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
L+LV Q LS G+ +RV IA L P +++LDEP +G+D
Sbjct: 146 LKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
+SGGQ +R++IA L +P I++LDE T+ +D K L+ L RT ++ H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR 197
Query: 126 IEEARQAD 133
+ AD
Sbjct: 198 LSTIVDAD 205
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
GNQL SGGQ + V++A L+ P +++LD+ TS +D + L RT
Sbjct: 154 GNQL----SGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 119 IIITTHYIEEARQA 132
+++ TH + A +A
Sbjct: 210 VLLITHQLSLAERA 223
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
++ S LSGGQ + V++A L+ P +++LD+ TS +D + L R++
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 208
Query: 120 IITTHYIEEARQAD 133
++ T ++ QAD
Sbjct: 209 LLITQHLSLVEQAD 222
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
Q + LSGG+A+R+ +A L S + VLDEPT+G+ P + L +L
Sbjct: 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN 784
Query: 117 RTIIITTHYIEEARQAD 133
T+I H ++ +D
Sbjct: 785 -TVIAVEHKMQVVAASD 800
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 65 TLSGGQARRVSIAVTLLHS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
TLS G+ +R+ +A L + + VLDEP++G+ P L L ++ +
Sbjct: 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN-SLFVV 437
Query: 123 THYIEEARQAD 133
H ++ R+AD
Sbjct: 438 EHDLDVIRRAD 448
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +++ IA TL D+ VLD+P+S +D + K + R+ K I H
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
Score = 34.3 bits (77), Expect = 0.022, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
N+ + LSGG +R+ +A +LL D+ + D+P+S +D
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG+ +R I + P++ +LDE SG+D +N L KR+ II THY
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL-RDGKRSFIIVTHY 204
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCST---L 66
LGF+ Q L E T E + + + EA + L+ +L G++L L
Sbjct: 84 LGFVFQFHYLIPELTALENV--IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYEL 141
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGG+ +RV+IA L + P ++ DEPT +D
Sbjct: 142 SGGEQQRVAIARALANEPILLFADEPTGNLD 172
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG+ +R I + P++ +LDE SG+D +N L KR+ II THY
Sbjct: 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL-RDGKRSFIIVTHY 223
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+Q LSGG+ +RV+I + L DI ++DEP++ +D K + R +K+T
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 120 IITTH 124
I H
Sbjct: 522 FIVEH 526
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +R +I ++ + D+ + DEP+S +D
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
GNQL SGGQ + V++A L+ P +++LD TS +D + L RT
Sbjct: 154 GNQL----SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 119 IIITTHYIEEARQA 132
+++ T + A +A
Sbjct: 210 VLLITQQLSLAERA 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 219
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 220 -MEHLKKAD 227
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 142 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 201
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 202 -MEHLKKAD 209
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 189
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 190 -MEHLKKAD 197
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLSGGQARRVSIA 77
+ +I E FF + + R L+ ++D+ G Q TLSGG+A+RV +A
Sbjct: 824 DMSIEEAAEFFEPIAGVHRY--------LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLA 875
Query: 78 VTLLH---SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
L + +LDEPT+G+ +N L T+I+ H ++ + +D
Sbjct: 876 SELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGN-TVIVIEHNLDVIKTSD 933
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEA--VIKD--------LQLVLDLPPGNQLCS 64
+ IA E +I++ F + L PR A V+K+ L + L+ ++ +
Sbjct: 461 KSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAA 520
Query: 65 TLSGGQARRVSIAVTLLHS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
TLSGG+A+R+ +A + + VLDEP+ G+ + L RL T+I+
Sbjct: 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN-TLIVV 579
Query: 123 THYIEEARQAD 133
H + AD
Sbjct: 580 EHDEDTIEHAD 590
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 219 -MEHLKKAD 226
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 129 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 188
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 189 -MEHLKKAD 196
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIP------RSSVEAVIKDLQLVLDLPPGNQLC 63
LG++ QE LF T+ A+ L N R +EA++ +L + +L +
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAY--GLGNGKGRTAQERQRIEAML-ELTGISEL--AGRYP 136
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +R ++A L P++I+LDEP S +D L + + + ++ + +
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196
Query: 124 HYIEEARQ 131
H EEA Q
Sbjct: 197 HDREEALQ 204
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D L ++ +K I++T+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSK 218
Query: 125 YIEEARQAD 133
+E ++AD
Sbjct: 219 -MEHLKKAD 226
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ +K I++T+
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 220 -MEHLRKAD 227
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ +K I++T+
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 220 -MEHLRKAD 227
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ +K I++T+
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 220 -MEHLRKAD 227
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ +K I++T+
Sbjct: 160 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 219
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 220 -MEHLRKAD 227
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ +K I++T+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 218
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 219 -MEHLRKAD 226
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHS 83
T+++ + +L + R ++K L+L ++ + LS GQ+ V ++ L
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL--RRKLYKLSAGQSVLVRTSLALASQ 146
Query: 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
P+I+ LDEP VD H +Y+ I+ TH
Sbjct: 147 PEIVGLDEPFENVDAARRHVISRYIKEYGKEG----ILVTH 183
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 25 ISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQA------RRVSIAV 78
++E F+ F ++P S VE + KD ++ + P G LSGG+ R++IA
Sbjct: 245 LNEAFSEF----DLPYSFVE-LTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIAN 299
Query: 79 TLL-HSPDIIVLDEPTSGVD----PLLAHYFWKYLNRLAHTDKRTIIITTH 124
L+ + + I+LDEPT +D LA F R + + IIIT H
Sbjct: 300 ALIGNRVECIILDEPTVYLDENRRAKLAEIF-----RKVKSIPQMIIITHH 345
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 66 LSGGQARRVSIAVTLLH------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
LSGG+ +RV +A L +P + LDEPTS +D + + L +L + +
Sbjct: 142 LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201
Query: 120 IITTH 124
H
Sbjct: 202 CCVLH 206
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 56 LPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95
+PPG+Q+C + + Q + S L +PD + D P SG
Sbjct: 347 IPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASG 386
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL-AHYFWKYLNRLAHTDKRTIIITT 123
TLS GQ ++S+A + D+ +LD P +D L F + +L +T I+ T
Sbjct: 160 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--KTRILVT 217
Query: 124 HYIEEARQAD 133
+E ++AD
Sbjct: 218 SKMEHLKKAD 227
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL-AHYFWKYLNRLAHTDKRTIIITT 123
TLS GQ ++S+A + D+ +LD P +D L F + +L +T I+ T
Sbjct: 159 TLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN--KTRILVT 216
Query: 124 HYIEEARQAD 133
+E ++AD
Sbjct: 217 SKMEHLKKAD 226
>pdb|3IKM|A Chain A, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
pdb|3IKM|D Chain D, Crystal Structure Of Human Mitochondrial Dna Polymerase
Holoenzyme
Length = 1172
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGG 69
MPQE L EEF +++ A + + + VEA K L + PG L T GG
Sbjct: 601 LMPQEAGLAEEFLLTDNSAIWQTVEELDYLEVEAEAKMENLRAAV-PGQPLALTARGG 657
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
L SGG+ +R I L+ P VLDE SG+D + +N + + ++I
Sbjct: 140 LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199
Query: 122 TTHY 125
THY
Sbjct: 200 -THY 202
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LS G + + +A ++L I++LDEP++ +DP+ + L + A D T+I+
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADC-TVILCE 211
Query: 124 HYIEEARQAD 133
IE + D
Sbjct: 212 ARIEAMLECD 221
>pdb|3KWL|A Chain A, Crystal Structure Of A Hypothetical Protein From
Helicobacter Pylori
Length = 514
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 16 EIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL 52
+IA+FE+ +S+ AFFSK + + S +KDL +
Sbjct: 77 QIAVFEDAKVSDLVAFFSKEWVLDPLSKRYALKDLXI 113
>pdb|3CUZ|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV1|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 3 IATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI 47
+A G+ ++P+ + E SE F++ +N+PR +++A +
Sbjct: 202 LAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATL 246
>pdb|3CV2|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
pdb|3CV2|B Chain B, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 532
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 3 IATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI 47
+A G+ ++P+ + E SE F++ +N+PR +++A +
Sbjct: 202 LAKGSGPYFYLPKTQSWQEAAWWSEVFSYAEDRFNLPRGTIKATL 246
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 66 LTPNYNPDIIFKDEKNTGADRLMTQRCKDRLNSLA 100
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 66 LTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 66 LTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 100
>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3MXW|A Chain A, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 169
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 48 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 82
>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
pdb|3M1N|B Chain B, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
Length = 175
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 54 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 88
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 57 LTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLA 91
>pdb|3N1R|A Chain A, Crystal Structure Of Shhn
Length = 160
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 42 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 76
>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
Signalling Domain Of Sonic Hedgehog
Length = 162
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 44 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 78
>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
Length = 152
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 38 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 72
>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 155
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 38 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 72
>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|B Chain B, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
Length = 168
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
+T ++PDII DE +G D L+ LN LA
Sbjct: 56 LTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALA 90
>pdb|4IYK|A Chain A, Crystal Structure Of A Hypothetical Protein (bacuni_04699)
From Bacteroides Uniformis Atcc 8492 At 2.00 A
Resolution
Length = 225
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 44 EAVIKDLQLVL--DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVL 89
E +K++QL D GN + TL+GG ++V T ++S DI L
Sbjct: 133 EVKLKEIQLFAFSDXWVGNNVKLTLNGGTDKQVFSPSTAINSADIYTL 180
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
Human Dhh Without Calcium
pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
Human Dhh With Calcium
Length = 165
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
++PDII DE SG D L+ + +N LA
Sbjct: 43 YNPDIIFKDEENSGADRLMTERCKERVNALA 73
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 170
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
++PDII DE SG D L+ + +N LA
Sbjct: 62 YNPDIIFKDEENSGADRLMTERCKERVNALA 92
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 164
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
++PDII DE SG D L+ + +N LA
Sbjct: 43 YNPDIIFKDEENSGADRLMTERCKERVNALA 73
>pdb|3EQX|A Chain A, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
pdb|3EQX|B Chain B, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
Length = 373
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 58 PGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH 102
P ++ + + G A+R + +V L DI VL+E SG + L H
Sbjct: 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKEKLFVH 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,771,522
Number of Sequences: 62578
Number of extensions: 136085
Number of successful extensions: 372
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 133
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)