Query psy17960
Match_columns 137
No_of_seqs 194 out of 1010
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:46:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.3E-42 5E-47 243.7 12.7 131 6-137 75-208 (240)
2 COG1135 AbcC ABC-type metal io 100.0 4.5E-41 9.7E-46 247.7 12.5 132 6-137 81-214 (339)
3 COG1116 TauB ABC-type nitrate/ 100.0 1.6E-40 3.5E-45 239.1 13.4 134 4-137 68-203 (248)
4 COG1136 SalX ABC-type antimicr 100.0 2.1E-39 4.6E-44 232.3 15.2 130 7-136 82-213 (226)
5 COG1125 OpuBA ABC-type proline 100.0 4.7E-40 1E-44 237.0 11.1 131 7-137 74-208 (309)
6 COG3839 MalK ABC-type sugar tr 100.0 1.1E-37 2.5E-42 234.8 12.9 130 8-137 75-206 (338)
7 COG2884 FtsE Predicted ATPase 100.0 2.5E-37 5.4E-42 214.5 12.9 132 3-135 74-206 (223)
8 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-38 1.3E-42 219.5 9.4 134 3-137 70-205 (245)
9 COG1127 Ttg2A ABC-type transpo 100.0 1.7E-37 3.8E-42 221.9 11.7 131 7-137 84-218 (263)
10 COG1131 CcmA ABC-type multidru 100.0 1.4E-36 3.1E-41 227.2 14.9 131 7-137 77-209 (293)
11 COG1117 PstB ABC-type phosphat 100.0 5.8E-37 1.3E-41 216.1 11.9 129 5-136 85-219 (253)
12 COG1118 CysA ABC-type sulfate/ 100.0 6.7E-37 1.5E-41 225.3 12.0 131 7-137 76-210 (345)
13 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-36 2.7E-41 220.6 12.3 132 6-137 77-211 (235)
14 COG3842 PotA ABC-type spermidi 100.0 9.3E-37 2E-41 230.9 11.3 131 7-137 76-209 (352)
15 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.4E-36 7.3E-41 218.7 13.1 129 8-137 75-211 (254)
16 PRK11650 ugpC glycerol-3-phosp 100.0 8.9E-36 1.9E-40 228.0 15.3 130 8-137 76-207 (356)
17 TIGR02314 ABC_MetN D-methionin 100.0 1E-35 2.2E-40 226.6 15.5 131 7-137 81-213 (343)
18 PRK11432 fbpC ferric transport 100.0 1.9E-35 4.1E-40 225.8 15.8 130 8-137 78-209 (351)
19 COG4175 ProV ABC-type proline/ 100.0 1.8E-36 4E-41 223.9 9.5 131 7-137 105-237 (386)
20 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-35 5E-40 226.1 15.8 130 8-137 79-211 (362)
21 TIGR01186 proV glycine betaine 100.0 3.1E-35 6.7E-40 225.2 15.7 131 7-137 70-202 (363)
22 TIGR03265 PhnT2 putative 2-ami 100.0 3.3E-35 7.1E-40 224.7 15.7 131 7-137 75-207 (353)
23 PRK13537 nodulation ABC transp 100.0 5.7E-35 1.2E-39 219.8 15.4 129 7-136 79-209 (306)
24 PRK11607 potG putrescine trans 100.0 9.2E-35 2E-39 223.8 15.7 131 7-137 90-222 (377)
25 PRK09452 potA putrescine/sperm 100.0 8.5E-35 1.8E-39 223.8 15.5 131 7-137 85-217 (375)
26 COG1124 DppF ABC-type dipeptid 100.0 1.1E-34 2.3E-39 207.9 12.9 129 7-137 81-214 (252)
27 TIGR01188 drrA daunorubicin re 100.0 2.1E-34 4.6E-39 216.3 14.8 128 8-136 66-195 (302)
28 TIGR00960 3a0501s02 Type II (G 100.0 2.8E-34 6.2E-39 206.1 14.8 128 8-136 80-209 (216)
29 PRK10851 sulfate/thiosulfate t 100.0 2.6E-34 5.6E-39 219.8 15.4 130 8-137 74-209 (353)
30 PRK11000 maltose/maltodextrin 100.0 2.7E-34 5.9E-39 220.8 15.6 130 8-137 75-206 (369)
31 cd03259 ABC_Carb_Solutes_like 100.0 4.7E-34 1E-38 204.5 14.5 129 8-136 72-202 (213)
32 COG1120 FepC ABC-type cobalami 100.0 8.3E-35 1.8E-39 212.2 10.6 131 6-136 74-210 (258)
33 PRK11153 metN DL-methionine tr 100.0 5.9E-34 1.3E-38 217.2 15.6 130 7-136 81-212 (343)
34 cd03261 ABC_Org_Solvent_Resist 100.0 6.7E-34 1.5E-38 206.6 15.1 130 7-136 76-208 (235)
35 PRK13536 nodulation factor exp 100.0 7.1E-34 1.5E-38 216.4 15.9 130 7-137 113-244 (340)
36 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 6.3E-34 1.4E-38 204.5 14.6 129 8-136 82-211 (218)
37 TIGR01187 potA spermidine/putr 100.0 8.6E-34 1.9E-38 214.9 15.7 130 8-137 42-173 (325)
38 TIGR03415 ABC_choXWV_ATP choli 100.0 8.8E-34 1.9E-38 218.3 15.9 130 8-137 106-237 (382)
39 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-33 2.4E-38 203.6 15.4 130 7-136 72-203 (220)
40 PRK10070 glycine betaine trans 100.0 1E-33 2.2E-38 219.1 16.2 129 8-136 106-236 (400)
41 COG0444 DppD ABC-type dipeptid 100.0 5.6E-34 1.2E-38 211.5 14.0 131 7-137 87-226 (316)
42 COG4181 Predicted ABC-type tra 100.0 4.5E-34 9.8E-39 195.9 12.3 130 7-136 87-217 (228)
43 TIGR02211 LolD_lipo_ex lipopro 100.0 1.1E-33 2.4E-38 203.6 15.1 129 8-136 83-212 (221)
44 cd03265 ABC_DrrA DrrA is the A 100.0 1.4E-33 3.1E-38 203.0 14.7 129 8-136 73-203 (220)
45 COG3638 ABC-type phosphate/pho 100.0 3.1E-34 6.7E-39 204.8 11.0 130 7-136 80-219 (258)
46 PRK11629 lolD lipoprotein tran 100.0 2.3E-33 4.9E-38 203.6 15.6 129 8-136 87-216 (233)
47 COG4152 ABC-type uncharacteriz 100.0 5.7E-34 1.2E-38 204.5 11.8 129 8-137 72-202 (300)
48 PRK15079 oligopeptide ABC tran 100.0 2.1E-33 4.5E-38 213.2 15.3 131 7-137 97-234 (331)
49 TIGR01288 nodI ATP-binding ABC 100.0 2.3E-33 4.9E-38 210.8 15.4 129 7-136 76-206 (303)
50 cd03301 ABC_MalK_N The N-termi 100.0 2.5E-33 5.5E-38 200.7 14.7 129 8-136 72-202 (213)
51 TIGR02673 FtsE cell division A 100.0 2.5E-33 5.5E-38 200.8 14.6 128 8-136 79-208 (214)
52 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.7E-33 1E-37 206.0 15.6 129 8-136 102-232 (269)
53 PRK13637 cbiO cobalt transport 100.0 4.9E-33 1.1E-37 207.6 15.5 130 7-136 82-216 (287)
54 cd03292 ABC_FtsE_transporter F 100.0 4.3E-33 9.2E-38 199.6 14.4 128 8-136 78-207 (214)
55 COG3840 ThiQ ABC-type thiamine 100.0 5.2E-34 1.1E-38 197.1 9.2 129 8-136 71-201 (231)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 4.1E-33 8.9E-38 209.3 14.8 128 8-137 75-204 (301)
57 cd03296 ABC_CysA_sulfate_impor 100.0 5.2E-33 1.1E-37 202.4 14.7 129 8-136 74-208 (239)
58 cd03266 ABC_NatA_sodium_export 100.0 4.4E-33 9.5E-38 200.1 14.1 128 8-136 78-207 (218)
59 cd03258 ABC_MetN_methionine_tr 100.0 6.7E-33 1.5E-37 201.0 14.9 130 7-136 81-212 (233)
60 PRK10584 putative ABC transpor 100.0 9.5E-33 2.1E-37 199.6 15.2 129 8-136 88-217 (228)
61 cd03225 ABC_cobalt_CbiO_domain 100.0 7.6E-33 1.6E-37 198.0 14.3 128 8-136 75-205 (211)
62 PRK13650 cbiO cobalt transport 100.0 5.9E-33 1.3E-37 206.4 13.8 129 8-136 81-211 (279)
63 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.4E-33 1.6E-37 198.1 13.8 129 8-136 70-200 (211)
64 PRK10908 cell division protein 100.0 1.1E-32 2.4E-37 198.7 14.7 128 8-136 79-208 (222)
65 cd03219 ABC_Mj1267_LivG_branch 100.0 1.3E-32 2.9E-37 199.7 15.1 128 8-136 75-214 (236)
66 PRK13651 cobalt transporter AT 100.0 1E-32 2.2E-37 207.5 14.6 130 7-137 104-237 (305)
67 PRK11248 tauB taurine transpor 100.0 1.8E-32 3.9E-37 201.5 15.6 129 8-136 70-200 (255)
68 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-32 3.3E-37 197.0 14.9 128 7-136 74-203 (214)
69 cd03269 ABC_putative_ATPase Th 100.0 1.5E-32 3.1E-37 196.5 14.7 128 8-136 70-199 (210)
70 cd03218 ABC_YhbG The ABC trans 100.0 1.7E-32 3.6E-37 198.7 15.0 128 8-136 75-204 (232)
71 cd03264 ABC_drug_resistance_li 100.0 1.1E-32 2.5E-37 197.1 13.9 128 7-136 71-200 (211)
72 TIGR03608 L_ocin_972_ABC putat 100.0 2.1E-32 4.4E-37 195.0 14.9 129 8-137 76-205 (206)
73 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.1E-32 4.5E-37 198.9 15.0 129 8-136 74-203 (236)
74 TIGR02142 modC_ABC molybdenum 100.0 1.6E-32 3.5E-37 210.1 15.1 128 7-136 74-203 (354)
75 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.7E-32 3.7E-37 200.0 14.6 129 8-136 75-207 (242)
76 PRK11022 dppD dipeptide transp 100.0 2.5E-32 5.3E-37 207.0 15.9 130 8-137 89-226 (326)
77 PRK13634 cbiO cobalt transport 100.0 1.7E-32 3.7E-37 205.0 14.7 128 8-136 85-217 (290)
78 PRK11831 putative ABC transpor 100.0 2.8E-32 6.2E-37 201.8 15.3 129 8-136 84-215 (269)
79 PRK11308 dppF dipeptide transp 100.0 3.1E-32 6.7E-37 206.5 15.8 131 7-137 91-227 (327)
80 COG1137 YhbG ABC-type (unclass 100.0 6.7E-33 1.4E-37 193.9 10.8 129 8-137 79-211 (243)
81 cd03256 ABC_PhnC_transporter A 100.0 2.4E-32 5.1E-37 198.8 14.0 129 8-136 78-216 (241)
82 TIGR01184 ntrCD nitrate transp 100.0 3.7E-32 8.1E-37 197.1 14.8 127 10-136 56-186 (230)
83 COG4525 TauB ABC-type taurine 100.0 1.5E-32 3.3E-37 191.8 12.0 131 6-136 72-204 (259)
84 PRK13647 cbiO cobalt transport 100.0 2.9E-32 6.2E-37 202.3 14.3 128 8-136 79-209 (274)
85 cd03262 ABC_HisP_GlnQ_permease 100.0 4.3E-32 9.3E-37 194.2 14.7 128 8-136 76-206 (213)
86 PRK09473 oppD oligopeptide tra 100.0 5.7E-32 1.2E-36 205.3 16.0 130 8-137 97-234 (330)
87 PRK11144 modC molybdate transp 100.0 3E-32 6.5E-37 208.5 14.5 124 7-136 75-200 (352)
88 TIGR01277 thiQ thiamine ABC tr 100.0 5E-32 1.1E-36 194.2 14.7 130 7-136 69-200 (213)
89 COG1123 ATPase components of v 100.0 3.5E-32 7.6E-37 214.2 14.9 131 7-137 90-227 (539)
90 PRK13646 cbiO cobalt transport 100.0 4E-32 8.7E-37 202.6 14.3 129 7-136 84-217 (286)
91 cd03263 ABC_subfamily_A The AB 100.0 4.9E-32 1.1E-36 194.9 14.3 127 8-136 75-203 (220)
92 PRK13635 cbiO cobalt transport 100.0 3.8E-32 8.3E-37 202.1 14.2 129 8-136 81-211 (279)
93 PRK13643 cbiO cobalt transport 100.0 5.2E-32 1.1E-36 202.2 14.9 129 7-137 83-216 (288)
94 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-32 6.1E-37 198.8 12.8 130 7-136 78-217 (243)
95 cd03268 ABC_BcrA_bacitracin_re 100.0 4.1E-32 8.8E-37 193.9 13.2 124 8-136 72-197 (208)
96 PRK11264 putative amino-acid A 100.0 1E-31 2.2E-36 196.7 15.3 129 7-136 84-215 (250)
97 PRK09536 btuD corrinoid ABC tr 100.0 5.2E-32 1.1E-36 209.7 14.4 129 7-136 76-210 (402)
98 COG4148 ModC ABC-type molybdat 100.0 3.5E-33 7.6E-38 203.7 7.4 125 7-137 75-201 (352)
99 cd03235 ABC_Metallic_Cations A 100.0 5.4E-32 1.2E-36 193.9 13.5 128 8-136 68-203 (213)
100 cd03224 ABC_TM1139_LivF_branch 100.0 6.4E-32 1.4E-36 194.4 13.6 126 8-136 75-203 (222)
101 COG4598 HisP ABC-type histidin 100.0 9.6E-33 2.1E-37 190.9 8.8 127 8-135 93-222 (256)
102 PRK10261 glutathione transport 100.0 9.7E-32 2.1E-36 218.4 16.0 130 8-137 104-241 (623)
103 PRK13636 cbiO cobalt transport 100.0 1E-31 2.3E-36 200.1 14.8 129 8-136 82-213 (283)
104 cd03226 ABC_cobalt_CbiO_domain 100.0 9E-32 1.9E-36 191.8 13.6 124 8-136 71-197 (205)
105 cd03260 ABC_PstB_phosphate_tra 100.0 1.1E-31 2.3E-36 194.0 14.1 127 7-136 80-211 (227)
106 PRK13640 cbiO cobalt transport 100.0 8.7E-32 1.9E-36 200.5 14.0 129 8-136 84-214 (282)
107 PRK13641 cbiO cobalt transport 100.0 1.4E-31 3E-36 199.9 15.1 127 8-136 85-216 (287)
108 cd03267 ABC_NatA_like Similar 100.0 1.7E-31 3.7E-36 194.3 15.2 129 8-136 94-225 (236)
109 PRK13631 cbiO cobalt transport 100.0 1.2E-31 2.6E-36 202.8 14.9 129 7-137 115-248 (320)
110 TIGR02324 CP_lyasePhnL phospho 100.0 2.7E-31 5.8E-36 191.6 15.9 128 8-136 90-220 (224)
111 TIGR03269 met_CoM_red_A2 methy 100.0 1.2E-31 2.6E-36 213.9 15.4 129 8-136 109-240 (520)
112 PRK09493 glnQ glutamine ABC tr 100.0 1.6E-31 3.6E-36 194.6 14.7 129 7-136 76-207 (240)
113 PRK10619 histidine/lysine/argi 100.0 2.4E-31 5.3E-36 195.5 15.7 128 8-136 92-223 (257)
114 PRK15093 antimicrobial peptide 100.0 2.2E-31 4.7E-36 202.2 15.6 130 8-137 89-231 (330)
115 cd03257 ABC_NikE_OppD_transpor 100.0 2.3E-31 5E-36 192.1 14.8 130 7-136 81-217 (228)
116 PRK11247 ssuB aliphatic sulfon 100.0 1.4E-31 3.1E-36 197.0 14.0 123 8-136 81-205 (257)
117 PRK10771 thiQ thiamine transpo 100.0 1.3E-31 2.7E-36 194.4 13.5 129 8-136 71-201 (232)
118 PRK13644 cbiO cobalt transport 100.0 1.5E-31 3.3E-36 198.4 14.0 128 8-136 77-206 (274)
119 TIGR00972 3a0107s01c2 phosphat 100.0 2.8E-31 6.2E-36 194.1 15.1 127 7-136 81-214 (247)
120 PRK10261 glutathione transport 100.0 2.2E-31 4.8E-36 216.3 15.8 131 7-137 400-536 (623)
121 PRK11124 artP arginine transpo 100.0 3.1E-31 6.6E-36 193.4 14.9 129 7-136 81-212 (242)
122 PRK13548 hmuV hemin importer A 100.0 2.5E-31 5.4E-36 195.7 14.4 129 8-136 76-212 (258)
123 PRK14268 phosphate ABC transpo 100.0 3.3E-31 7.2E-36 195.0 15.1 126 8-136 93-224 (258)
124 PRK13632 cbiO cobalt transport 100.0 1.9E-31 4.1E-36 197.6 13.8 130 7-136 82-213 (271)
125 cd03300 ABC_PotA_N PotA is an 100.0 4.5E-31 9.7E-36 191.6 15.5 130 7-136 71-202 (232)
126 PRK13633 cobalt transporter AT 100.0 2.1E-31 4.6E-36 198.2 14.1 130 7-136 84-215 (280)
127 COG0411 LivG ABC-type branched 100.0 2.6E-31 5.7E-36 190.6 13.9 130 8-137 79-222 (250)
128 PRK13652 cbiO cobalt transport 100.0 3.4E-31 7.5E-36 196.8 15.0 129 8-136 78-209 (277)
129 PRK13642 cbiO cobalt transport 100.0 2.8E-31 6E-36 197.3 14.4 130 7-136 80-211 (277)
130 TIGR02770 nickel_nikD nickel i 100.0 4.1E-31 8.8E-36 191.5 14.9 129 8-136 62-197 (230)
131 cd03299 ABC_ModC_like Archeal 100.0 5E-31 1.1E-35 191.7 15.3 130 7-136 70-201 (235)
132 PRK11300 livG leucine/isoleuci 100.0 3.3E-31 7.2E-36 194.4 14.3 129 8-136 80-225 (255)
133 TIGR03005 ectoine_ehuA ectoine 100.0 5E-31 1.1E-35 193.3 14.9 130 7-136 86-218 (252)
134 TIGR03411 urea_trans_UrtD urea 100.0 5.3E-31 1.1E-35 192.0 14.9 127 8-136 77-213 (242)
135 TIGR01166 cbiO cobalt transpor 100.0 3.3E-31 7.1E-36 186.9 13.1 120 8-129 68-190 (190)
136 PRK14247 phosphate ABC transpo 100.0 6.5E-31 1.4E-35 192.4 15.1 127 8-136 82-216 (250)
137 PRK10895 lipopolysaccharide AB 100.0 3.6E-31 7.9E-36 192.9 13.7 128 8-136 78-208 (241)
138 PRK09984 phosphonate/organopho 100.0 3.3E-31 7.1E-36 195.3 13.5 129 8-136 86-224 (262)
139 TIGR02982 heterocyst_DevA ABC 100.0 5.6E-31 1.2E-35 189.6 14.2 130 7-136 81-212 (220)
140 TIGR02769 nickel_nikE nickel i 100.0 7.5E-31 1.6E-35 193.8 15.1 129 8-136 88-222 (265)
141 COG1123 ATPase components of v 100.0 3.3E-31 7.1E-36 208.7 13.5 130 8-137 367-502 (539)
142 PRK13645 cbiO cobalt transport 100.0 6.4E-31 1.4E-35 196.4 14.4 128 8-136 90-222 (289)
143 PRK13649 cbiO cobalt transport 100.0 8.3E-31 1.8E-35 194.9 14.9 127 8-136 85-216 (280)
144 PRK13648 cbiO cobalt transport 100.0 6.4E-31 1.4E-35 194.5 14.2 129 8-136 83-213 (269)
145 PRK13549 xylose transporter AT 100.0 4.5E-31 9.7E-36 210.1 14.2 128 8-136 82-214 (506)
146 TIGR03269 met_CoM_red_A2 methy 100.0 6.6E-31 1.4E-35 209.7 15.2 128 8-136 365-499 (520)
147 PRK13638 cbiO cobalt transport 100.0 8.1E-31 1.8E-35 194.2 14.5 128 8-136 77-207 (271)
148 TIGR03410 urea_trans_UrtE urea 100.0 6.6E-31 1.4E-35 190.2 13.6 126 8-136 75-203 (230)
149 PRK15134 microcin C ABC transp 100.0 7E-31 1.5E-35 210.0 15.0 129 8-136 362-497 (529)
150 PRK10762 D-ribose transporter 100.0 5.4E-31 1.2E-35 209.4 14.2 128 8-136 79-212 (501)
151 PRK14267 phosphate ABC transpo 100.0 1.3E-30 2.7E-35 191.2 14.9 127 8-136 85-219 (253)
152 TIGR00968 3a0106s01 sulfate AB 100.0 1.3E-30 2.9E-35 189.6 14.8 130 7-136 71-202 (237)
153 PRK14241 phosphate transporter 100.0 1.5E-30 3.1E-35 191.5 15.0 127 8-136 85-218 (258)
154 COG4161 ArtP ABC-type arginine 100.0 1.7E-31 3.6E-36 182.2 9.2 130 6-136 80-212 (242)
155 PRK13639 cbiO cobalt transport 100.0 1.2E-30 2.6E-35 193.7 14.7 129 7-136 77-208 (275)
156 PRK14273 phosphate ABC transpo 100.0 1.2E-30 2.6E-35 191.5 14.6 127 7-136 87-220 (254)
157 PRK14242 phosphate transporter 100.0 2.3E-30 5E-35 189.8 15.4 126 8-136 87-219 (253)
158 PRK10575 iron-hydroxamate tran 100.0 1.2E-30 2.6E-35 192.7 13.7 129 8-136 85-219 (265)
159 PRK11231 fecE iron-dicitrate t 100.0 1.5E-30 3.2E-35 191.2 14.0 128 8-136 76-209 (255)
160 PRK15112 antimicrobial peptide 100.0 1.7E-30 3.7E-35 192.1 14.5 129 8-136 87-221 (267)
161 PRK10744 pstB phosphate transp 100.0 2E-30 4.4E-35 191.0 14.5 127 7-136 93-226 (260)
162 PRK15134 microcin C ABC transp 100.0 1.9E-30 4.2E-35 207.4 15.2 129 8-136 92-228 (529)
163 PRK10253 iron-enterobactin tra 100.0 1.4E-30 3.1E-35 192.3 13.4 129 8-136 81-215 (265)
164 TIGR03740 galliderm_ABC gallid 100.0 2.6E-30 5.7E-35 186.4 14.2 124 8-136 70-195 (223)
165 PRK11614 livF leucine/isoleuci 100.0 1.2E-30 2.6E-35 189.7 12.4 126 8-136 80-208 (237)
166 cd03234 ABCG_White The White s 100.0 3.6E-30 7.9E-35 186.1 14.5 129 7-136 80-215 (226)
167 TIGR01978 sufC FeS assembly AT 100.0 4.6E-30 9.9E-35 187.0 15.1 127 9-136 78-216 (243)
168 PRK14256 phosphate ABC transpo 100.0 4.6E-30 1E-34 188.2 15.2 128 7-136 84-218 (252)
169 PRK09700 D-allose transporter 100.0 2.1E-30 4.5E-35 206.4 14.4 128 8-136 80-216 (510)
170 PRK14258 phosphate ABC transpo 100.0 6E-30 1.3E-34 188.6 15.8 129 7-136 87-222 (261)
171 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-30 5.4E-35 205.5 14.7 128 8-136 78-212 (500)
172 cd03237 ABC_RNaseL_inhibitor_d 100.0 3.2E-30 6.9E-35 188.8 13.7 125 8-136 61-187 (246)
173 PRK14235 phosphate transporter 100.0 4.8E-30 1E-34 189.7 14.8 126 8-136 100-233 (267)
174 PRK14239 phosphate transporter 100.0 5E-30 1.1E-34 187.9 14.8 126 8-136 86-218 (252)
175 PRK14269 phosphate ABC transpo 100.0 4.4E-30 9.6E-35 187.8 14.4 126 8-136 79-212 (246)
176 TIGR01257 rim_protein retinal- 100.0 2.1E-30 4.6E-35 227.8 15.0 130 7-137 2011-2142(2272)
177 PRK14245 phosphate ABC transpo 100.0 6.1E-30 1.3E-34 187.4 15.1 126 8-136 84-216 (250)
178 PRK11288 araG L-arabinose tran 100.0 2.9E-30 6.3E-35 205.3 14.5 128 8-136 79-211 (501)
179 PRK10247 putative ABC transpor 100.0 4.4E-30 9.5E-35 185.6 14.2 126 8-136 81-208 (225)
180 TIGR03771 anch_rpt_ABC anchore 100.0 4.6E-30 1E-34 185.3 14.2 128 8-136 49-184 (223)
181 PRK13543 cytochrome c biogenes 100.0 5.2E-30 1.1E-34 184.0 14.1 125 8-136 82-208 (214)
182 PRK13538 cytochrome c biogenes 100.0 4.5E-30 9.8E-35 183.1 13.6 122 8-133 74-196 (204)
183 TIGR03873 F420-0_ABC_ATP propo 100.0 4.9E-30 1.1E-34 188.5 14.1 128 8-136 75-208 (256)
184 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-30 6.9E-35 205.4 14.0 124 8-136 86-211 (510)
185 COG4172 ABC-type uncharacteriz 100.0 2.9E-30 6.3E-35 196.3 13.1 130 8-137 93-230 (534)
186 PRK14250 phosphate ABC transpo 100.0 3.5E-30 7.7E-35 187.8 13.0 125 7-136 76-203 (241)
187 PRK14259 phosphate ABC transpo 100.0 5.8E-30 1.3E-34 189.5 14.3 125 8-136 94-224 (269)
188 PRK14240 phosphate transporter 100.0 7.5E-30 1.6E-34 186.8 14.7 127 7-136 83-216 (250)
189 PRK14270 phosphate ABC transpo 100.0 8.2E-30 1.8E-34 186.8 14.9 127 7-136 84-217 (251)
190 PRK10982 galactose/methyl gala 100.0 4.8E-30 1E-34 203.5 14.4 128 8-136 73-205 (491)
191 TIGR01257 rim_protein retinal- 100.0 4.8E-30 1E-34 225.6 15.5 128 7-136 1002-1131(2272)
192 PRK14244 phosphate ABC transpo 100.0 1E-29 2.2E-34 186.3 14.9 127 7-136 85-219 (251)
193 PRK11701 phnK phosphonate C-P 100.0 1.2E-29 2.7E-34 186.6 15.2 129 8-136 89-223 (258)
194 PRK14274 phosphate ABC transpo 100.0 1.1E-29 2.3E-34 187.0 14.9 126 8-136 93-225 (259)
195 PRK14260 phosphate ABC transpo 100.0 1.2E-29 2.5E-34 186.9 14.9 126 8-136 88-220 (259)
196 PRK03695 vitamin B12-transport 100.0 7.6E-30 1.6E-34 186.9 13.9 127 8-136 69-204 (248)
197 PRK09700 D-allose transporter 100.0 5.7E-30 1.2E-34 203.9 13.9 128 8-136 338-480 (510)
198 PRK14254 phosphate ABC transpo 100.0 1.2E-29 2.6E-34 189.2 14.8 125 7-135 119-249 (285)
199 PRK14272 phosphate ABC transpo 100.0 1.6E-29 3.4E-34 185.2 15.2 127 8-136 85-218 (252)
200 PRK14249 phosphate ABC transpo 100.0 1.5E-29 3.3E-34 185.4 14.9 127 7-136 84-217 (251)
201 PRK14248 phosphate ABC transpo 100.0 1.2E-29 2.6E-34 187.6 14.4 127 7-136 101-234 (268)
202 cd03231 ABC_CcmA_heme_exporter 100.0 7.9E-30 1.7E-34 181.5 12.9 122 8-136 73-196 (201)
203 PRK10418 nikD nickel transport 100.0 2.1E-29 4.6E-34 185.0 15.5 127 8-136 79-212 (254)
204 PRK13549 xylose transporter AT 100.0 8.6E-30 1.9E-34 202.8 14.4 128 8-136 338-476 (506)
205 PRK14251 phosphate ABC transpo 100.0 1.7E-29 3.8E-34 185.0 14.6 127 7-136 84-217 (251)
206 PRK14275 phosphate ABC transpo 100.0 1.7E-29 3.6E-34 188.6 14.8 127 7-136 119-252 (286)
207 PRK10762 D-ribose transporter 100.0 1.1E-29 2.5E-34 201.9 14.5 128 8-136 327-466 (501)
208 PRK14253 phosphate ABC transpo 100.0 2.2E-29 4.8E-34 184.2 14.6 127 7-136 82-215 (249)
209 PRK14262 phosphate ABC transpo 100.0 2.7E-29 5.8E-34 183.9 15.0 127 7-136 83-216 (250)
210 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.2E-29 4.7E-34 182.0 14.1 119 17-136 93-213 (224)
211 PRK14255 phosphate ABC transpo 100.0 3.5E-29 7.6E-34 183.5 15.3 126 8-136 86-218 (252)
212 TIGR02633 xylG D-xylose ABC tr 100.0 1.1E-29 2.5E-34 201.8 13.6 128 8-136 336-474 (500)
213 PRK10419 nikE nickel transport 100.0 3.8E-29 8.2E-34 185.1 15.4 130 7-136 88-223 (268)
214 COG0410 LivF ABC-type branched 100.0 7.7E-30 1.7E-34 181.8 11.1 130 7-137 77-209 (237)
215 PRK11288 araG L-arabinose tran 100.0 1.2E-29 2.5E-34 201.8 13.4 128 8-136 328-467 (501)
216 PRK13539 cytochrome c biogenes 100.0 1.9E-29 4.2E-34 180.2 13.0 122 8-135 73-195 (207)
217 PRK14236 phosphate transporter 100.0 3.7E-29 8.1E-34 185.4 14.9 127 7-136 105-238 (272)
218 PRK14237 phosphate transporter 100.0 4.6E-29 1E-33 184.5 15.1 127 7-136 100-233 (267)
219 PRK13547 hmuV hemin importer A 100.0 2E-29 4.4E-34 186.9 13.2 129 8-136 83-226 (272)
220 TIGR02323 CP_lyasePhnK phospho 100.0 4.9E-29 1.1E-33 182.8 15.0 129 8-136 86-220 (253)
221 PRK14246 phosphate ABC transpo 100.0 5.2E-29 1.1E-33 183.4 15.1 128 7-136 89-223 (257)
222 PRK14265 phosphate ABC transpo 100.0 4.1E-29 8.8E-34 185.5 14.3 126 8-137 101-232 (274)
223 PRK13409 putative ATPase RIL; 100.0 2.7E-29 5.9E-34 202.7 14.2 123 9-136 401-525 (590)
224 PRK14271 phosphate ABC transpo 100.0 6.2E-29 1.3E-33 184.6 15.1 127 7-136 100-233 (276)
225 PRK14261 phosphate ABC transpo 100.0 6.4E-29 1.4E-33 182.3 14.9 127 7-136 86-219 (253)
226 PRK14243 phosphate transporter 100.0 4.2E-29 9.1E-34 184.4 13.9 126 7-136 90-221 (264)
227 PRK13540 cytochrome c biogenes 100.0 4.8E-29 1E-33 177.3 13.4 122 8-135 74-196 (200)
228 PRK14238 phosphate transporter 100.0 5.5E-29 1.2E-33 184.5 14.2 127 7-136 104-237 (271)
229 COG4172 ABC-type uncharacteriz 100.0 2.9E-29 6.3E-34 190.9 12.8 129 8-136 363-498 (534)
230 PRK14263 phosphate ABC transpo 100.0 7.7E-29 1.7E-33 182.8 14.7 126 7-136 88-219 (261)
231 PRK14257 phosphate ABC transpo 100.0 8.2E-29 1.8E-33 188.0 15.2 128 7-137 162-296 (329)
232 PRK15439 autoinducer 2 ABC tra 100.0 5.6E-29 1.2E-33 198.3 14.4 128 8-136 338-474 (510)
233 PRK14266 phosphate ABC transpo 100.0 1.3E-28 2.9E-33 180.2 14.1 127 7-136 83-216 (250)
234 PRK11174 cysteine/glutathione 100.0 5.3E-29 1.1E-33 201.1 12.8 126 7-137 422-555 (588)
235 TIGR01189 ccmA heme ABC export 100.0 1.3E-28 2.7E-33 174.8 12.8 117 8-129 73-190 (198)
236 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-29 6E-34 182.5 9.7 124 8-136 76-207 (237)
237 PRK14252 phosphate ABC transpo 100.0 2.6E-28 5.6E-33 180.2 14.6 127 7-136 98-231 (265)
238 PRK13541 cytochrome c biogenes 100.0 1.3E-28 2.9E-33 174.4 12.4 123 8-136 70-193 (195)
239 PRK09544 znuC high-affinity zi 100.0 1.3E-28 2.7E-33 180.8 12.7 122 8-136 67-192 (251)
240 PLN03211 ABC transporter G-25; 100.0 1.9E-28 4E-33 200.0 14.6 128 8-136 140-278 (659)
241 cd03251 ABCC_MsbA MsbA is an e 100.0 9.7E-29 2.1E-33 179.2 11.4 124 8-136 76-207 (234)
242 CHL00131 ycf16 sulfate ABC tra 100.0 5.6E-28 1.2E-32 177.0 15.0 127 9-136 85-223 (252)
243 PRK13546 teichoic acids export 100.0 7.6E-28 1.6E-32 177.8 15.7 126 10-136 87-214 (264)
244 cd03248 ABCC_TAP TAP, the Tran 100.0 6.1E-29 1.3E-33 179.5 9.6 124 8-136 88-219 (226)
245 COG1129 MglA ABC-type sugar tr 100.0 2.3E-28 4.9E-33 191.5 13.4 128 9-137 84-217 (500)
246 cd03230 ABC_DR_subfamily_A Thi 100.0 2.1E-28 4.6E-33 170.5 11.9 93 8-136 73-166 (173)
247 PRK14264 phosphate ABC transpo 100.0 4.7E-28 1E-32 182.2 14.4 125 8-135 126-269 (305)
248 cd03245 ABCC_bacteriocin_expor 100.0 8.6E-29 1.9E-33 178.0 10.0 120 8-136 78-209 (220)
249 PRK15056 manganese/iron transp 100.0 3.1E-28 6.7E-33 180.5 13.2 128 8-136 78-213 (272)
250 cd03229 ABC_Class3 This class 100.0 1.9E-28 4.2E-33 171.4 10.7 97 7-136 75-172 (178)
251 TIGR00955 3a01204 The Eye Pigm 100.0 2.7E-28 5.8E-33 198.1 13.1 128 8-136 99-238 (617)
252 cd03233 ABC_PDR_domain1 The pl 100.0 5.8E-28 1.3E-32 172.1 12.9 108 7-136 82-191 (202)
253 COG3845 ABC-type uncharacteriz 100.0 2.9E-28 6.2E-33 188.7 12.1 128 9-137 80-212 (501)
254 COG4988 CydD ABC-type transpor 100.0 3E-28 6.5E-33 191.8 12.4 126 7-137 394-526 (559)
255 cd03215 ABC_Carb_Monos_II This 100.0 5.3E-28 1.1E-32 169.7 12.2 97 8-136 75-175 (182)
256 cd03254 ABCC_Glucan_exporter_l 100.0 2.1E-28 4.5E-33 177.0 10.2 125 7-136 76-208 (229)
257 PRK10982 galactose/methyl gala 100.0 5.7E-28 1.2E-32 191.7 13.5 128 8-136 323-462 (491)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2E-28 4.2E-33 178.1 10.0 124 8-136 77-208 (238)
259 KOG0058|consensus 100.0 1.3E-28 2.7E-33 197.5 9.8 126 7-137 541-674 (716)
260 cd03213 ABCG_EPDR ABCG transpo 100.0 6.1E-28 1.3E-32 171.0 12.1 101 7-136 81-183 (194)
261 PRK10535 macrolide transporter 100.0 1.7E-27 3.7E-32 194.3 15.8 128 8-136 86-214 (648)
262 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.8E-28 1.7E-32 171.7 12.1 114 7-136 81-194 (207)
263 cd03253 ABCC_ATM1_transporter 100.0 6.5E-28 1.4E-32 175.1 11.9 124 8-136 75-206 (236)
264 KOG0059|consensus 100.0 3.3E-28 7.3E-33 203.7 11.6 131 6-137 638-770 (885)
265 cd03246 ABCC_Protease_Secretio 100.0 5.4E-28 1.2E-32 168.4 10.7 92 7-136 75-166 (173)
266 cd03232 ABC_PDR_domain2 The pl 100.0 9.1E-28 2E-32 169.8 11.8 100 8-136 79-180 (192)
267 PRK10938 putative molybdenum t 100.0 4.8E-28 1E-32 192.1 11.3 120 8-136 77-206 (490)
268 PRK09580 sufC cysteine desulfu 100.0 2.9E-27 6.3E-32 172.8 14.6 128 8-136 78-217 (248)
269 COG4619 ABC-type uncharacteriz 100.0 1.2E-28 2.5E-33 168.8 6.5 125 8-135 77-204 (223)
270 KOG0055|consensus 100.0 2.6E-28 5.7E-33 204.7 9.8 129 4-137 1060-1196(1228)
271 PRK11819 putative ABC transpor 100.0 1.7E-27 3.7E-32 191.5 14.1 125 8-136 70-231 (556)
272 PTZ00265 multidrug resistance 100.0 3.9E-28 8.5E-33 210.9 11.1 128 7-137 1295-1430(1466)
273 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.7E-28 1E-32 179.8 10.0 120 7-136 76-207 (275)
274 PRK13545 tagH teichoic acids e 100.0 2.6E-27 5.6E-32 187.3 14.7 122 14-136 91-214 (549)
275 PRK10790 putative multidrug tr 100.0 1.3E-27 2.8E-32 193.2 12.5 124 7-136 414-545 (592)
276 COG2274 SunT ABC-type bacterio 100.0 7.3E-28 1.6E-32 196.8 11.0 127 6-137 545-679 (709)
277 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.6E-27 7.7E-32 189.5 14.5 125 8-136 68-229 (552)
278 cd03290 ABCC_SUR1_N The SUR do 99.9 2.9E-27 6.3E-32 170.0 12.6 124 8-136 79-212 (218)
279 cd03223 ABCD_peroxisomal_ALDP 99.9 2.4E-27 5.1E-32 164.3 11.2 95 8-136 64-158 (166)
280 cd03247 ABCC_cytochrome_bd The 99.9 2.1E-27 4.5E-32 166.1 10.5 93 8-136 75-167 (178)
281 PLN03140 ABC transporter G fam 99.9 4.8E-27 1E-31 203.8 15.0 128 8-136 953-1091(1470)
282 cd03250 ABCC_MRP_domain1 Domai 99.9 2.7E-27 5.8E-32 168.6 11.1 123 9-136 67-198 (204)
283 PRK15064 ABC transporter ATP-b 99.9 5.9E-27 1.3E-31 187.4 14.3 125 8-136 64-223 (530)
284 TIGR02857 CydD thiol reductant 99.9 2.1E-27 4.7E-32 189.8 11.4 126 7-137 395-528 (529)
285 PRK11176 lipid transporter ATP 99.9 1.7E-27 3.7E-32 192.1 11.0 126 7-136 416-549 (582)
286 PRK10938 putative molybdenum t 99.9 2.5E-27 5.4E-32 188.0 11.7 129 8-136 336-474 (490)
287 KOG0055|consensus 99.9 7.6E-28 1.6E-32 201.9 9.1 128 5-137 424-559 (1228)
288 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.3E-27 5E-32 194.6 11.7 123 7-137 526-656 (686)
289 TIGR01842 type_I_sec_PrtD type 99.9 5.9E-27 1.3E-31 187.9 13.7 126 7-136 391-524 (544)
290 cd03244 ABCC_MRP_domain2 Domai 99.9 2E-27 4.4E-32 171.0 10.0 124 7-136 77-208 (221)
291 PRK13657 cyclic beta-1,2-gluca 99.9 3.5E-27 7.5E-32 190.7 12.5 125 7-136 408-540 (588)
292 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 6.3E-27 1.4E-31 188.1 13.6 122 9-136 386-511 (552)
293 PRK11160 cysteine/glutathione 99.9 2.3E-27 4.9E-32 191.4 10.9 121 7-136 413-544 (574)
294 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 3.1E-27 6.8E-32 194.4 11.9 124 7-137 552-683 (710)
295 COG1132 MdlB ABC-type multidru 99.9 3.9E-27 8.5E-32 189.7 11.5 126 7-137 402-535 (567)
296 TIGR00956 3a01205 Pleiotropic 99.9 1E-26 2.2E-31 201.7 14.6 129 7-136 835-974 (1394)
297 PRK11819 putative ABC transpor 99.9 8.6E-27 1.9E-31 187.4 13.3 122 9-136 388-513 (556)
298 TIGR03375 type_I_sec_LssB type 99.9 3.7E-27 8.1E-32 193.6 11.3 126 7-137 538-671 (694)
299 TIGR02203 MsbA_lipidA lipid A 99.9 5.2E-27 1.1E-31 188.8 11.6 126 7-136 405-538 (571)
300 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-26 2.3E-31 165.3 11.4 98 8-136 77-176 (200)
301 cd03228 ABCC_MRP_Like The MRP 99.9 6.9E-27 1.5E-31 162.6 10.2 90 8-136 76-165 (171)
302 cd03236 ABC_RNaseL_inhibitor_d 99.9 2.3E-26 5E-31 169.2 13.5 121 9-136 88-210 (255)
303 TIGR01192 chvA glucan exporter 99.9 1.1E-26 2.4E-31 187.7 12.7 125 7-136 408-540 (585)
304 TIGR01193 bacteriocin_ABC ABC- 99.9 6.2E-27 1.3E-31 192.6 11.2 125 7-136 547-679 (708)
305 PRK15064 ABC transporter ATP-b 99.9 1.4E-26 3E-31 185.3 12.9 120 8-136 382-506 (530)
306 TIGR02868 CydC thiol reductant 99.9 5.8E-27 1.3E-31 187.3 10.2 115 7-126 407-529 (529)
307 TIGR00954 3a01203 Peroxysomal 99.9 1.2E-26 2.5E-31 189.7 11.2 125 7-136 514-649 (659)
308 TIGR00958 3a01208 Conjugate Tr 99.9 2E-26 4.2E-31 189.8 12.5 124 7-137 554-685 (711)
309 TIGR00956 3a01205 Pleiotropic 99.9 3E-26 6.5E-31 198.8 14.1 129 8-136 138-282 (1394)
310 PRK10789 putative multidrug tr 99.9 1.5E-26 3.3E-31 186.4 11.2 125 7-136 388-520 (569)
311 COG4604 CeuD ABC-type enteroch 99.9 1.1E-27 2.4E-32 167.6 3.7 129 8-136 75-207 (252)
312 KOG0057|consensus 99.9 9.7E-27 2.1E-31 182.0 9.2 130 3-137 420-557 (591)
313 TIGR02204 MsbA_rel ABC transpo 99.9 3.4E-26 7.4E-31 184.3 12.6 124 8-136 414-545 (576)
314 PRK15177 Vi polysaccharide exp 99.9 5.5E-26 1.2E-30 163.2 12.2 118 14-136 55-174 (213)
315 cd03288 ABCC_SUR2 The SUR doma 99.9 1.9E-26 4.2E-31 169.6 10.1 124 7-136 94-225 (257)
316 TIGR01846 type_I_sec_HlyB type 99.9 2.4E-26 5.1E-31 188.9 11.1 125 7-136 530-662 (694)
317 PTZ00265 multidrug resistance 99.9 1.5E-26 3.2E-31 201.1 10.4 78 60-137 574-651 (1466)
318 COG4559 ABC-type hemin transpo 99.9 1.9E-26 4.1E-31 162.9 8.7 130 7-137 74-213 (259)
319 COG4674 Uncharacterized ABC-ty 99.9 1.6E-26 3.4E-31 161.6 8.1 129 7-137 80-218 (249)
320 PRK13409 putative ATPase RIL; 99.9 7.3E-26 1.6E-30 182.9 12.6 117 9-136 161-282 (590)
321 cd03271 ABC_UvrA_II The excisi 99.9 8E-26 1.7E-30 166.5 11.6 120 10-136 118-242 (261)
322 COG4608 AppF ABC-type oligopep 99.9 3E-26 6.6E-31 167.1 9.2 98 40-137 82-182 (268)
323 PRK11147 ABC transporter ATPas 99.9 1.5E-25 3.2E-30 182.6 12.9 122 9-136 383-508 (635)
324 COG4136 ABC-type uncharacteriz 99.9 1.3E-26 2.7E-31 156.5 5.4 127 6-133 75-202 (213)
325 cd03214 ABC_Iron-Siderophores_ 99.9 1.6E-25 3.4E-30 156.9 9.9 87 50-136 81-169 (180)
326 PLN03130 ABC transporter C fam 99.9 1.4E-25 3E-30 196.5 11.6 125 7-137 1312-1444(1622)
327 PRK10522 multidrug transporter 99.9 1.6E-25 3.4E-30 179.8 11.0 119 7-136 396-520 (547)
328 PLN03232 ABC transporter C fam 99.9 1.1E-25 2.4E-30 196.4 10.7 125 7-137 1309-1441(1495)
329 KOG0061|consensus 99.9 4.1E-25 8.9E-30 179.1 13.0 129 7-136 103-242 (613)
330 cd03291 ABCC_CFTR1 The CFTR su 99.9 4.1E-25 8.9E-30 164.6 11.3 122 9-136 99-229 (282)
331 TIGR01194 cyc_pep_trnsptr cycl 99.9 3.1E-25 6.8E-30 178.4 10.8 118 8-136 416-541 (555)
332 PRK10636 putative ABC transpor 99.9 6.4E-25 1.4E-29 179.0 12.6 118 9-136 376-498 (638)
333 TIGR00957 MRP_assoc_pro multi 99.9 3.1E-25 6.7E-30 193.9 11.2 125 7-137 1359-1491(1522)
334 COG4987 CydC ABC-type transpor 99.9 1.8E-25 3.9E-30 174.7 7.8 125 8-137 412-544 (573)
335 PLN03140 ABC transporter G fam 99.9 6.6E-25 1.4E-29 190.6 11.8 130 7-136 238-409 (1470)
336 cd03270 ABC_UvrA_I The excisio 99.9 4.3E-24 9.4E-29 154.6 14.2 87 49-136 119-209 (226)
337 cd03216 ABC_Carb_Monos_I This 99.9 1.2E-24 2.7E-29 150.3 10.2 70 66-136 83-153 (163)
338 PLN03232 ABC transporter C fam 99.9 7.5E-25 1.6E-29 191.2 10.7 124 7-136 678-810 (1495)
339 PTZ00243 ABC transporter; Prov 99.9 9.2E-25 2E-29 191.0 11.2 125 7-137 1383-1516(1560)
340 COG4618 ArpD ABC-type protease 99.9 1.9E-24 4.2E-29 168.1 11.2 126 7-136 409-542 (580)
341 cd03238 ABC_UvrA The excision 99.9 3E-24 6.6E-29 150.0 11.1 87 49-136 69-159 (176)
342 TIGR01271 CFTR_protein cystic 99.9 1.9E-24 4.1E-29 188.6 12.3 125 7-137 1291-1423(1490)
343 COG4586 ABC-type uncharacteriz 99.9 2.1E-24 4.5E-29 157.4 10.4 127 10-136 99-228 (325)
344 cd03222 ABC_RNaseL_inhibitor T 99.9 2.7E-24 5.8E-29 150.4 10.3 71 66-136 72-143 (177)
345 TIGR01271 CFTR_protein cystic 99.9 3.4E-24 7.4E-29 187.0 12.9 122 9-136 488-618 (1490)
346 PLN03130 ABC transporter C fam 99.9 2E-24 4.3E-29 189.3 11.1 124 7-136 678-810 (1622)
347 PLN03073 ABC transporter F fam 99.9 1E-23 2.2E-28 173.4 13.7 119 8-136 572-695 (718)
348 TIGR00957 MRP_assoc_pro multi 99.9 2.5E-24 5.4E-29 188.2 10.6 124 9-136 700-832 (1522)
349 COG0488 Uup ATPase components 99.9 7.1E-24 1.5E-28 168.8 12.2 124 9-136 67-221 (530)
350 COG1119 ModF ABC-type molybden 99.9 2.4E-24 5.1E-29 155.0 7.7 128 5-132 103-239 (257)
351 cd03278 ABC_SMC_barmotin Barmo 99.9 9.4E-24 2E-28 150.0 10.6 108 7-136 75-186 (197)
352 PRK10636 putative ABC transpor 99.9 2.1E-23 4.5E-28 170.2 14.0 89 44-136 126-217 (638)
353 COG1129 MglA ABC-type sugar tr 99.9 1.3E-23 2.9E-28 164.8 11.8 128 9-137 335-473 (500)
354 PTZ00243 ABC transporter; Prov 99.9 1.2E-23 2.6E-28 184.1 12.3 123 8-136 721-852 (1560)
355 PRK11147 ABC transporter ATPas 99.9 4.9E-23 1.1E-27 167.9 14.2 88 44-136 136-224 (635)
356 COG4778 PhnL ABC-type phosphon 99.9 1.4E-23 3.1E-28 144.2 7.4 128 8-136 93-223 (235)
357 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-23 2.2E-28 154.7 6.3 127 8-136 77-239 (251)
358 COG1101 PhnK ABC-type uncharac 99.9 4.5E-23 9.7E-28 146.1 9.0 127 9-135 81-219 (263)
359 cd03240 ABC_Rad50 The catalyti 99.9 7E-23 1.5E-27 146.2 8.4 111 8-136 71-193 (204)
360 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.3E-22 5E-27 136.4 8.6 69 64-136 69-138 (144)
361 PRK00349 uvrA excinuclease ABC 99.9 6.6E-22 1.4E-26 165.8 13.0 114 20-136 434-561 (943)
362 cd03276 ABC_SMC6_euk Eukaryoti 99.9 7.4E-22 1.6E-26 140.4 11.3 78 59-136 103-186 (198)
363 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.7E-22 8.1E-27 145.4 9.4 123 8-136 98-231 (243)
364 COG4133 CcmA ABC-type transpor 99.9 1.1E-21 2.4E-26 136.3 10.6 116 10-129 77-193 (209)
365 COG1134 TagH ABC-type polysacc 99.9 1.4E-21 3.1E-26 140.6 11.3 126 10-136 90-218 (249)
366 cd03274 ABC_SMC4_euk Eukaryoti 99.9 9.8E-24 2.1E-28 151.5 -0.3 128 8-137 59-201 (212)
367 PLN03073 ABC transporter F fam 99.9 8.2E-22 1.8E-26 162.2 10.6 86 47-136 324-412 (718)
368 cd00267 ABC_ATPase ABC (ATP-bi 99.9 9.5E-22 2.1E-26 134.8 9.1 70 66-136 81-151 (157)
369 COG0488 Uup ATPase components 99.9 2.2E-21 4.9E-26 154.6 12.2 119 8-136 385-507 (530)
370 COG5265 ATM1 ABC-type transpor 99.9 2.5E-22 5.4E-27 153.6 6.2 126 7-137 336-469 (497)
371 COG4107 PhnK ABC-type phosphon 99.9 3.1E-21 6.7E-26 133.4 10.5 123 9-135 90-222 (258)
372 TIGR00630 uvra excinuclease AB 99.9 4.6E-21 1E-25 160.5 13.6 113 21-136 433-559 (924)
373 PRK00635 excinuclease ABC subu 99.9 4.8E-21 1E-25 167.1 13.4 116 19-136 759-882 (1809)
374 KOG0054|consensus 99.9 1.3E-21 2.7E-26 167.3 8.9 125 8-137 582-714 (1381)
375 PRK00349 uvrA excinuclease ABC 99.9 7.5E-21 1.6E-25 159.5 13.3 108 22-136 791-903 (943)
376 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.2E-21 6.9E-26 138.4 9.1 77 59-136 117-204 (213)
377 KOG0056|consensus 99.8 4.2E-22 9E-27 155.2 3.8 127 6-137 610-744 (790)
378 COG0396 sufC Cysteine desulfur 99.8 3.1E-20 6.8E-25 132.6 12.9 128 8-136 81-216 (251)
379 TIGR00630 uvra excinuclease AB 99.8 1.7E-20 3.6E-25 157.2 12.9 108 22-136 789-901 (924)
380 COG4167 SapF ABC-type antimicr 99.8 2.9E-20 6.3E-25 129.4 10.9 131 6-136 85-221 (267)
381 cd03275 ABC_SMC1_euk Eukaryoti 99.8 1.4E-20 3E-25 137.9 7.3 75 61-136 151-229 (247)
382 PRK00635 excinuclease ABC subu 99.8 1.5E-19 3.2E-24 158.0 11.5 83 53-136 462-548 (1809)
383 KOG0065|consensus 99.8 2E-19 4.3E-24 152.2 7.5 128 7-135 863-1001(1391)
384 KOG0054|consensus 99.8 2.8E-19 6E-24 153.2 8.2 125 7-137 1213-1345(1381)
385 COG1245 Predicted ATPase, RNas 99.8 5.5E-19 1.2E-23 136.7 9.0 125 8-136 401-527 (591)
386 COG3845 ABC-type uncharacteriz 99.8 1.4E-18 2.9E-23 135.2 11.1 129 8-137 334-475 (501)
387 cd03239 ABC_SMC_head The struc 99.8 1.6E-18 3.4E-23 121.5 9.1 70 66-136 95-168 (178)
388 COG4170 SapD ABC-type antimicr 99.8 6.2E-19 1.3E-23 125.3 4.7 130 7-137 88-231 (330)
389 KOG0062|consensus 99.8 3.4E-18 7.4E-23 133.6 8.8 85 47-135 178-265 (582)
390 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2E-18 4.3E-23 124.1 6.6 77 59-135 120-202 (213)
391 KOG0062|consensus 99.8 2.4E-18 5.2E-23 134.4 7.4 123 5-135 424-549 (582)
392 PF00005 ABC_tran: ABC transpo 99.7 3.3E-18 7.1E-23 114.4 6.1 75 7-94 58-137 (137)
393 COG1245 Predicted ATPase, RNas 99.7 5.7E-18 1.2E-22 131.1 7.8 90 46-136 193-284 (591)
394 cd03227 ABC_Class2 ABC-type Cl 99.7 1.6E-17 3.4E-22 114.7 8.7 72 64-136 76-151 (162)
395 COG4138 BtuD ABC-type cobalami 99.7 1.9E-18 4.2E-23 119.6 3.5 121 9-135 73-202 (248)
396 COG4178 ABC-type uncharacteriz 99.7 2.2E-17 4.8E-22 132.3 9.9 118 7-131 455-579 (604)
397 cd03241 ABC_RecN RecN ATPase i 99.7 1.8E-17 4E-22 123.2 7.9 72 63-136 168-243 (276)
398 KOG0927|consensus 99.7 3.7E-17 8E-22 128.5 9.6 75 59-136 215-290 (614)
399 TIGR00618 sbcc exonuclease Sbc 99.7 2.7E-17 5.9E-22 140.5 9.4 78 59-137 944-1032(1042)
400 KOG0927|consensus 99.7 5.4E-17 1.2E-21 127.6 7.2 89 43-135 485-576 (614)
401 TIGR00634 recN DNA repair prot 99.7 9.6E-17 2.1E-21 129.6 8.3 71 64-136 439-513 (563)
402 COG0178 UvrA Excinuclease ATPa 99.7 2.7E-16 5.9E-21 128.3 10.7 108 22-136 783-895 (935)
403 PHA02562 46 endonuclease subun 99.7 7.5E-17 1.6E-21 129.9 6.8 74 60-136 463-547 (562)
404 PRK10869 recombination and rep 99.7 4.4E-16 9.5E-21 125.4 8.7 70 65-136 430-503 (553)
405 PRK10246 exonuclease subunit S 99.6 7.8E-16 1.7E-20 131.5 9.2 72 59-131 943-1022(1047)
406 PRK03918 chromosome segregatio 99.6 8.3E-16 1.8E-20 129.4 8.8 76 60-136 783-864 (880)
407 TIGR00606 rad50 rad50. This fa 99.6 1.7E-15 3.6E-20 132.0 9.6 71 61-131 1195-1275(1311)
408 TIGR02168 SMC_prok_B chromosom 99.6 1.5E-15 3.3E-20 130.1 8.1 75 60-136 1084-1162(1179)
409 PRK01156 chromosome segregatio 99.6 2.8E-15 6.1E-20 126.6 9.5 76 61-136 797-880 (895)
410 cd03280 ABC_MutS2 MutS2 homolo 99.6 3.8E-15 8.2E-20 106.0 8.1 76 59-136 85-161 (200)
411 KOG0066|consensus 99.6 6.2E-15 1.3E-19 114.5 8.1 112 9-131 651-766 (807)
412 KOG0066|consensus 99.5 1.1E-14 2.4E-19 113.2 5.0 88 44-135 389-479 (807)
413 COG0178 UvrA Excinuclease ATPa 99.5 2.3E-13 5E-18 111.5 12.6 115 20-136 426-553 (935)
414 KOG0065|consensus 99.5 3.2E-14 6.9E-19 121.1 6.1 130 7-136 188-333 (1391)
415 TIGR02169 SMC_prok_A chromosom 99.5 5.9E-14 1.3E-18 120.6 7.7 75 60-136 1069-1147(1164)
416 KOG0060|consensus 99.5 2.5E-13 5.3E-18 107.9 10.4 118 8-130 501-631 (659)
417 PRK02224 chromosome segregatio 99.5 1E-13 2.3E-18 116.9 8.1 75 61-136 777-864 (880)
418 cd03285 ABC_MSH2_euk MutS2 hom 99.4 3.9E-13 8.5E-18 97.2 8.0 73 61-136 85-163 (222)
419 smart00534 MUTSac ATPase domai 99.4 5.3E-13 1.1E-17 93.9 7.8 74 59-133 55-129 (185)
420 cd03242 ABC_RecF RecF is a rec 99.4 3.8E-13 8.2E-18 99.8 6.2 64 63-131 181-253 (270)
421 cd03243 ABC_MutS_homologs The 99.4 1.3E-12 2.8E-17 93.0 7.9 73 60-134 86-159 (202)
422 cd03283 ABC_MutS-like MutS-lik 99.4 3E-12 6.6E-17 91.1 7.6 91 12-132 63-154 (199)
423 TIGR00611 recf recF protein. A 99.4 1.8E-12 4E-17 99.9 6.7 63 64-130 274-345 (365)
424 PRK00064 recF recombination pr 99.3 5.9E-12 1.3E-16 97.0 7.2 67 61-131 269-344 (361)
425 KOG2355|consensus 99.3 4E-12 8.7E-17 90.4 5.0 82 49-131 132-213 (291)
426 KOG0063|consensus 99.3 3.9E-12 8.4E-17 98.5 5.1 84 53-137 200-285 (592)
427 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.2E-11 2.5E-16 88.5 6.8 71 59-131 85-156 (204)
428 KOG0064|consensus 99.3 1E-11 2.2E-16 98.3 6.6 119 8-131 545-674 (728)
429 COG0419 SbcC ATPase involved i 99.3 2E-11 4.3E-16 103.6 8.8 74 61-135 811-892 (908)
430 KOG0063|consensus 99.3 1.6E-11 3.4E-16 95.2 7.1 124 9-136 403-528 (592)
431 TIGR02680 conserved hypothetic 99.2 1.9E-11 4E-16 107.1 7.6 64 60-127 1242-1317(1353)
432 PF02463 SMC_N: RecF/RecN/SMC 99.2 8.1E-11 1.8E-15 84.5 8.4 69 65-135 136-208 (220)
433 COG4615 PvdE ABC-type sideroph 99.2 2.2E-10 4.7E-15 88.3 9.7 74 62-135 445-518 (546)
434 PRK00409 recombination and DNA 99.2 8E-11 1.7E-15 98.4 7.6 70 60-131 385-455 (782)
435 COG2401 ABC-type ATPase fused 99.1 1.6E-10 3.5E-15 89.5 7.7 83 49-131 488-573 (593)
436 cd03281 ABC_MSH5_euk MutS5 hom 99.1 2.7E-10 5.8E-15 81.9 8.4 69 64-132 87-160 (213)
437 PF13304 AAA_21: AAA domain; P 99.1 2.1E-10 4.6E-15 81.9 7.8 67 62-129 233-302 (303)
438 TIGR01069 mutS2 MutS2 family p 99.0 1E-09 2.2E-14 91.7 7.9 69 61-131 381-450 (771)
439 cd03284 ABC_MutS1 MutS1 homolo 99.0 1.2E-09 2.5E-14 78.8 6.0 69 64-134 84-161 (216)
440 PF13558 SbcCD_C: Putative exo 98.9 2E-09 4.4E-14 67.4 5.2 51 60-110 27-90 (90)
441 cd01124 KaiC KaiC is a circadi 98.9 1.9E-09 4.2E-14 75.2 5.0 69 59-128 65-142 (187)
442 PRK14079 recF recombination pr 98.9 2.8E-09 6.2E-14 81.9 5.5 59 64-126 262-329 (349)
443 PTZ00132 GTP-binding nuclear p 98.8 9.1E-09 2E-13 73.6 5.0 43 70-112 157-204 (215)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.7 5.7E-08 1.2E-12 70.2 8.0 68 64-131 88-158 (218)
445 cd03287 ABC_MSH3_euk MutS3 hom 98.6 2.7E-07 5.8E-12 66.8 8.5 69 63-131 88-159 (222)
446 PF13175 AAA_15: AAA ATPase do 98.6 2.7E-07 5.9E-12 71.5 7.4 68 61-128 337-414 (415)
447 PRK13695 putative NTPase; Prov 98.5 4.2E-07 9.1E-12 63.1 6.5 71 61-136 74-146 (174)
448 PRK13830 conjugal transfer pro 98.5 3.5E-07 7.5E-12 77.3 6.1 49 81-130 650-699 (818)
449 cd01125 repA Hexameric Replica 98.4 8.5E-07 1.8E-11 64.6 5.4 84 41-127 54-160 (239)
450 PRK13891 conjugal transfer pro 98.3 1.7E-06 3.6E-11 73.5 7.3 55 76-131 680-735 (852)
451 TIGR03185 DNA_S_dndD DNA sulfu 98.3 2.6E-06 5.6E-11 70.5 6.7 64 62-130 548-618 (650)
452 COG1196 Smc Chromosome segrega 98.2 3.9E-06 8.4E-11 73.4 7.0 73 61-135 1062-1138(1163)
453 COG4637 Predicted ATPase [Gene 98.2 1.1E-05 2.4E-10 60.9 7.8 66 64-131 269-336 (373)
454 cd01128 rho_factor Transcripti 98.2 1E-06 2.2E-11 64.9 2.3 68 64-136 128-204 (249)
455 KOG0964|consensus 98.2 1.9E-06 4.1E-11 72.4 4.0 73 62-136 1094-1170(1200)
456 PRK08533 flagellar accessory p 98.1 1.5E-05 3.3E-10 58.0 6.6 62 65-128 95-164 (230)
457 COG3910 Predicted ATPase [Gene 98.0 2.7E-05 5.9E-10 55.1 7.1 69 60-130 124-192 (233)
458 TIGR02858 spore_III_AA stage I 98.0 3.2E-05 7E-10 57.6 7.3 50 71-128 182-231 (270)
459 PF13166 AAA_13: AAA domain 97.9 7.4E-05 1.6E-09 62.3 9.6 70 62-131 497-576 (712)
460 PRK05399 DNA mismatch repair p 97.9 6.5E-05 1.4E-09 64.0 8.4 72 60-133 661-737 (854)
461 PRK06067 flagellar accessory p 97.9 7.4E-05 1.6E-09 54.2 7.5 63 65-128 100-167 (234)
462 PRK13873 conjugal transfer ATP 97.8 4.7E-05 1E-09 64.6 6.8 51 80-131 632-683 (811)
463 COG0497 RecN ATPase involved i 97.8 0.00011 2.5E-09 59.3 8.1 68 64-133 430-501 (557)
464 KOG0962|consensus 97.7 7.7E-05 1.7E-09 64.9 6.1 66 66-131 1184-1259(1294)
465 cd01120 RecA-like_NTPases RecA 97.7 0.00021 4.6E-09 47.9 7.2 64 65-129 67-140 (165)
466 PRK13898 type IV secretion sys 97.7 0.00014 3.1E-09 61.6 7.2 52 79-131 638-690 (800)
467 KOG0933|consensus 97.5 7.7E-05 1.7E-09 63.2 3.2 61 63-125 1080-1144(1174)
468 PRK08699 DNA polymerase III su 97.4 0.00021 4.6E-09 54.6 4.1 43 87-131 116-158 (325)
469 KOG0996|consensus 97.4 0.00015 3.3E-09 62.3 3.6 64 60-125 1190-1257(1293)
470 cd01131 PilT Pilus retraction 97.2 0.0015 3.2E-08 46.4 6.1 53 75-135 66-118 (198)
471 KOG0018|consensus 97.0 0.00098 2.1E-08 57.1 4.6 70 60-133 1046-1119(1141)
472 PF00488 MutS_V: MutS domain V 96.9 0.0077 1.7E-07 44.0 8.3 70 62-131 99-171 (235)
473 TIGR02655 circ_KaiC circadian 96.7 0.00014 2.9E-09 58.4 -2.4 57 61-128 111-169 (484)
474 TIGR02788 VirB11 P-type DNA tr 96.6 0.0054 1.2E-07 46.5 5.4 55 73-135 208-262 (308)
475 TIGR00152 dephospho-CoA kinase 96.6 0.00072 1.6E-08 47.4 0.6 66 68-136 60-128 (188)
476 PRK06793 fliI flagellum-specif 96.5 0.0049 1.1E-07 48.9 4.8 67 63-132 219-292 (432)
477 COG4694 Uncharacterized protei 96.3 0.019 4.1E-07 46.7 6.9 65 65-130 529-601 (758)
478 COG1195 RecF Recombinational D 96.2 0.011 2.3E-07 45.9 5.3 62 64-130 274-344 (363)
479 PF13514 AAA_27: AAA domain 96.2 0.018 3.9E-07 50.8 7.3 68 62-131 1022-1097(1111)
480 TIGR01070 mutS1 DNA mismatch r 96.2 0.035 7.7E-07 47.6 8.8 71 61-131 647-720 (840)
481 smart00382 AAA ATPases associa 96.2 0.083 1.8E-06 33.6 8.7 62 64-125 59-125 (148)
482 TIGR01420 pilT_fam pilus retra 95.8 0.022 4.8E-07 43.8 5.3 55 73-135 185-239 (343)
483 PRK14088 dnaA chromosomal repl 95.8 0.024 5.2E-07 45.1 5.5 49 82-131 193-243 (440)
484 PRK07721 fliI flagellum-specif 95.6 0.023 5E-07 45.3 4.7 71 64-135 222-324 (438)
485 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.03 6.5E-07 40.2 3.5 43 82-125 106-153 (224)
486 PRK04863 mukB cell division pr 94.8 0.027 5.8E-07 51.0 3.3 60 63-127 1363-1440(1486)
487 PTZ00454 26S protease regulato 94.8 0.16 3.6E-06 40.0 7.4 56 75-130 230-298 (398)
488 COG4938 Uncharacterized conser 94.6 0.068 1.5E-06 40.4 4.5 55 74-130 251-306 (374)
489 PF09818 ABC_ATPase: Predicted 94.6 0.22 4.8E-06 39.7 7.4 73 64-136 321-409 (448)
490 COG1106 Predicted ATPases [Gen 94.2 0.21 4.5E-06 39.0 6.5 71 60-130 246-317 (371)
491 PRK06893 DNA replication initi 94.2 0.12 2.6E-06 37.4 5.0 44 81-125 89-133 (229)
492 COG3593 Predicted ATP-dependen 94.1 0.068 1.5E-06 44.0 3.9 48 83-132 301-348 (581)
493 cd00009 AAA The AAA+ (ATPases 94.0 0.21 4.5E-06 32.1 5.6 55 72-127 73-131 (151)
494 PRK06995 flhF flagellar biosyn 93.6 0.65 1.4E-05 37.6 8.5 107 8-124 287-400 (484)
495 cd00561 CobA_CobO_BtuR ATP:cor 93.6 0.23 4.9E-06 34.3 5.2 62 72-135 82-149 (159)
496 KOG0250|consensus 93.5 0.058 1.2E-06 46.8 2.6 75 62-136 986-1065(1074)
497 COG4913 Uncharacterized protei 93.4 0.25 5.5E-06 41.7 5.9 56 64-123 989-1057(1104)
498 TIGR00929 VirB4_CagE type IV s 92.9 0.34 7.3E-06 41.1 6.3 50 81-131 627-677 (785)
499 cd01122 GP4d_helicase GP4d_hel 92.7 0.2 4.3E-06 36.9 4.2 55 72-126 127-191 (271)
500 PTZ00361 26 proteosome regulat 91.7 0.93 2E-05 36.3 7.1 57 75-131 268-337 (438)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=243.75 Aligned_cols=131 Identities=30% Similarity=0.427 Sum_probs=120.4
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHH-HhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.++++|+|||+.+|||++||.||+.++. ...+.+++++++....+++.+|+.+ .+.+|.+|||||||||+|||||+.+
T Consensus 75 ~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred HHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 3567999999999999999999998764 3456788888889999999999976 7999999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|+++|+|||||+|||....++++.++++++ .|.|.+++||+|.++.. +||+++
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHHHHhhheEEE
Confidence 999999999999999999999999999986 59999999999999999 999864
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-41 Score=247.67 Aligned_cols=132 Identities=27% Similarity=0.426 Sum_probs=125.9
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+++||++||+++++...||.+|++|++.+.+.++++++++...+++.+|+++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 45789999999999999999999999999999889999999999999999976 69999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||+|||||+|||...+.++++|++++++.|.||+++||.|+.++. ||++++
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav 214 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV 214 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE
Confidence 99999999999999999999999999998899999999999999999 999864
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=239.14 Aligned_cols=134 Identities=28% Similarity=0.372 Sum_probs=122.8
Q ss_pred ccCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 4 ATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 4 ~~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
..+...+||+||++.+||++||.||+.++....+.++.+.++.++.+++.+|+.. .+++|++|||||||||+|||||+.
T Consensus 68 ~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 68 TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred CCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 3455679999999999999999999999988766666666778889999999965 899999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|++|||||||++||...+..+.+.+.++.++.+.||++||||++++-. +|||++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv 203 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV 203 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence 9999999999999999999999999999988889999999999999998 999864
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-39 Score=232.34 Aligned_cols=130 Identities=32% Similarity=0.391 Sum_probs=117.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-C-CCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-G-NQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+.|||+||+.+|.|.+||.||+.+++.+.+.+....++..+.+++.+|+.+ . +++|.+|||||||||+|||||+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 3569999999999999999999999887766655455677888888889864 4 4889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++|.||||.+||..+.+.+++++.+++++.|+|||++|||...+..|||+.
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i 213 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI 213 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE
Confidence 9999999999999999999999999998877999999999999999999974
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-40 Score=236.99 Aligned_cols=131 Identities=29% Similarity=0.466 Sum_probs=124.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC---CCCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP---PGNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+++|||+-|+..+||++||.||+.+...+.++++++++++++++++.++++ ..+|+|++|||||+|||.+||||+.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad 153 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD 153 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence 467999999999999999999999988888889999999999999999995 26999999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|+++||||||++|||..+..+.+.++++.++-|+|||++|||++++.. +|||++
T Consensus 154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v 208 (309)
T COG1125 154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV 208 (309)
T ss_pred CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence 999999999999999999999999999998889999999999999999 999974
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=234.76 Aligned_cols=130 Identities=31% Similarity=0.411 Sum_probs=124.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.||+|||+..+||+|||+||+.|+++..+.++++++++++.+.+.+++.+ .++++.+|||||||||++|||++.+|++
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v 154 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV 154 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE
Confidence 679999999999999999999999999988888899999999999999976 7999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||+|+||...+..+...|+++.++-|.|+|++|||-.++.. +|+|++
T Consensus 155 ~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~V 206 (338)
T COG3839 155 FLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206 (338)
T ss_pred EEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEE
Confidence 999999999999999999999999988889999999999999999 999874
No 7
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.5e-37 Score=214.49 Aligned_cols=132 Identities=24% Similarity=0.400 Sum_probs=122.2
Q ss_pred cccCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 3 IATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 3 ~~~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
|..-+++||+|||+..+.+..||+||++|++...+.++.++++....+++.+|+.+ .+..|.+||||||||++||||++
T Consensus 74 iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 74 IPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred cchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc
Confidence 45567889999999999999999999999999888888889999999999999976 68899999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.+|++||.||||.+|||....++++++.++++ .|.||+|+|||.+.+.+....
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~r 206 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHR 206 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCc
Confidence 99999999999999999999999999999985 699999999999999885443
No 8
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=219.49 Aligned_cols=134 Identities=28% Similarity=0.489 Sum_probs=124.6
Q ss_pred cccCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 3 IATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 3 ~~~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+...+++||.++.+..+|..||++||+.|++.++++++.+.++.++.+.+.+++.. .++++.+||.||||||+||||++
T Consensus 70 p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 70 PSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred hHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh
Confidence 44566889999988899999999999999999999999999999999999998855 89999999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++|++++|||||||||..+++.+.+.++++++ .|++||++||+|++++. ||++.+
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHHHHHHhhheEEE
Confidence 99999999999999999999999999999974 58999999999999998 999753
No 9
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-37 Score=221.93 Aligned_cols=131 Identities=29% Similarity=0.415 Sum_probs=118.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
++++|++||+..||..+||+||+.|+++-+ +++++.+++....-++.+|++. .+.+|.+|||||++|++||||++.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 467999999999999999999999987654 4677777777777777888853 6899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|+++++||||+||||.+...+-++|+++++.-|.|++++|||++.+.. ||++.+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAV 218 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEE
Confidence 999999999999999999999999999998889999999999999999 899863
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-36 Score=227.19 Aligned_cols=131 Identities=39% Similarity=0.714 Sum_probs=118.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++++||+||++.+++.+|++||+.|.+.+++.+....++.++.+++.+++.. .++++++||+|||||++||+||+.+|+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ 156 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPE 156 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999999999999998887655455678888999999865 578899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||+||||.++..++++|++++++.|+||+++||.+++++. ||++.+
T Consensus 157 lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~i 209 (293)
T COG1131 157 LLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVII 209 (293)
T ss_pred EEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEE
Confidence 9999999999999999999999999987655899999999999999 998753
No 11
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=216.11 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=110.8
Q ss_pred cCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCC----CC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 5 TGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL----PP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 5 ~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
..+++||+|||.|+.|| +|++||+.|+.++++...++.++.++..+....+ ++ .++.+..||||||||++||||
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 34578999999999999 8999999999998887655666666665554443 23 467888999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++.+|++||||||||+|||.+..++-++|.++++ .-||+++||+|..+.+ +|...
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhh
Confidence 9999999999999999999999999999999974 5799999999999998 77654
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-37 Score=225.35 Aligned_cols=131 Identities=29% Similarity=0.440 Sum_probs=119.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC--CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN--IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.++|||+||+..+|++|||.+|++|+....+ .++..++..+.+++..+.+.. .+++|.+|||||||||++||||+.+
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~e 155 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVE 155 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcC
Confidence 4679999999999999999999999986542 345567788888888888866 7999999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|++||||||+++||...++++...|+++.++.|.|++++|||.+++.. ||++++
T Consensus 156 P~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv 210 (345)
T COG1118 156 PKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV 210 (345)
T ss_pred CCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence 999999999999999999999999999988779999999999999999 999863
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=220.56 Aligned_cols=132 Identities=30% Similarity=0.394 Sum_probs=119.8
Q ss_pred CCCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 6 GASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 6 ~~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.++++||+||+|. .+..-||.+.++|+....+.+.++++++++.+++.+++.. .++++.+|||||||||+||.+|+.+
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 4578999999983 4444599999999988888888888899999999999865 7999999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|++|||||||||||+.+++.+++++++++++.|+|+|++|||++++.. ||++++
T Consensus 157 P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v 211 (235)
T COG1122 157 PEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV 211 (235)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence 999999999999999999999999999987768999999999999998 998863
No 14
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-37 Score=230.88 Aligned_cols=131 Identities=30% Similarity=0.418 Sum_probs=120.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.||+|||+..|||+|||.||+.|+++..+ ..++++++++..+++.+++.. .++++.+|||||||||++||||+.+|
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P 155 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEP 155 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCc
Confidence 4679999999999999999999999988444 344567889999999999965 89999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||+|+||..-+.++..-++++.++.|.|.|++|||-+++.. +|||++
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V 209 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE
Confidence 99999999999999999999999999988889999999999999988 999874
No 15
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=218.74 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=109.5
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+||||||.. ..-..+||+|.+.+++..+ +...+..++.++.+++.+++.+ .++++++|||||+|||.|||||
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 5799999964 2233479999998863321 1122333678888899999865 8999999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+++|++|+|||||+|+|+.++..++++|++++++ |+||+++|||++.+.. +|++.|
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~ 211 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVIC 211 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEE
Confidence 9999999999999999999999999999999876 9999999999999988 998764
No 16
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-36 Score=228.03 Aligned_cols=130 Identities=27% Similarity=0.411 Sum_probs=116.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.|||+||++.+||++||+||+.|+....+.+..+..+.++.+++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l 155 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV 155 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999999876555555555667788888888865 7999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||++||+..++.+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 156 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v 207 (356)
T PRK11650 156 FLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207 (356)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999976668999999999999988 998853
No 17
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1e-35 Score=226.56 Aligned_cols=131 Identities=26% Similarity=0.407 Sum_probs=117.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.|||+||++.+++.+|++||+.++....+.+..+.++.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4579999999999999999999998776555555556667778888888865 689999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||++||+.++..++++|++++++.|.|||++||+++.+.. ||++.+
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v 213 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV 213 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999986668999999999999988 998853
No 18
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=225.82 Aligned_cols=130 Identities=25% Similarity=0.387 Sum_probs=117.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+||++||+||+.|+...++.++.+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 78 r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l 157 (351)
T PRK11432 78 RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV 157 (351)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 679999999999999999999999876655566666677888888888865 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||+|||+..+..+.+.|+++.++.|.|+|++|||.+++.. ||++++
T Consensus 158 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~v 209 (351)
T PRK11432 158 LLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209 (351)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 999999999999999999999999976668999999999999987 999864
No 19
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=223.92 Aligned_cols=131 Identities=28% Similarity=0.401 Sum_probs=123.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++++++|||+..|+|+.||.||+.|+....+.++.+.++....+++.+|+.. .+++|++|||||||||.|||||+.+|+
T Consensus 105 r~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~ 184 (386)
T COG4175 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPD 184 (386)
T ss_pred hhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCC
Confidence 3579999999999999999999999999989988888888899999999965 799999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||+|||||.|||--+.+..+.|.++.++-++||+|+|||++++.+ +|||++
T Consensus 185 IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 185 ILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred EEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEE
Confidence 9999999999999999999999999987778999999999999999 999864
No 20
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-35 Score=226.07 Aligned_cols=130 Identities=26% Similarity=0.407 Sum_probs=117.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.|||+||++.+|+++||+||+.|+....+.+..+..+.++.+++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l 158 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999999876655565566677888888888865 7999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcC-CcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTD-KRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~-~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||+|||+..+..+.+.|+++.++. |.|+|++|||++++.. ||++++
T Consensus 159 lLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~v 211 (362)
T TIGR03258 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGI 211 (362)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999997654 7899999999999988 998863
No 21
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.1e-35 Score=225.22 Aligned_cols=131 Identities=29% Similarity=0.433 Sum_probs=117.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+|+++||+||+.+.....+.++.+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~ 149 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPD 149 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999998876666665556667778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||++||+..+..+.+.+.++.++.|+|||++|||++++.. ||++++
T Consensus 150 iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 150 ILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999976668999999999999887 999863
No 22
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=3.3e-35 Score=224.69 Aligned_cols=131 Identities=31% Similarity=0.402 Sum_probs=118.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.+||+||++.+||++||.||+.|+....+.++.+.++.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 75 KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred HCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999876555556666777888999999865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||++||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v 207 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV 207 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999977668999999999999988 998863
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.7e-35 Score=219.80 Aligned_cols=129 Identities=33% Similarity=0.601 Sum_probs=114.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.|||+||++.+++.+|++||+.++...++.+..+....++.+++.+++.. .++++++||+|||||++||+||+++|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999998776666555555566777888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..++++|+++++ .|.|||++||+++++.. ||++.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~~~~~d~i~ 209 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLC 209 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 9999999999999999999999999964 58999999999999988 99875
No 24
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-35 Score=223.77 Aligned_cols=131 Identities=25% Similarity=0.369 Sum_probs=116.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.+||+||++.+||++||.||+.|+....+.+..+.++.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~ 169 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK 169 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999998876555555566677778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..++.+.+.++++.++.|.|+|++|||++++.. ||++++
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~v 222 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI 222 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999876668999999999999988 998753
No 25
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.5e-35 Score=223.76 Aligned_cols=131 Identities=27% Similarity=0.343 Sum_probs=116.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.+||+||++.+||++||.||+.|+....+.+..+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999876555555555667778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||+|||+..+..+.+.|+++.++.|.|+|++|||.+++.. ||++.+
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~v 217 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVV 217 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999987668999999999999988 998863
No 26
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=207.95 Aligned_cols=129 Identities=24% Similarity=0.322 Sum_probs=115.0
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
.+.|-+|||+| ++-|..||.+.+.-+...++.++. ++.+..+++.+|++. .++++.+|||||+||++|||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 46789999998 588889999998887776665443 334778888999964 699999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|++||||||||+||+..+.++++++.+++++.+.|+|++|||+..+.. |||+.+
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence 9999999999999999999999999999998889999999999999999 999864
No 27
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-34 Score=216.29 Aligned_cols=128 Identities=35% Similarity=0.668 Sum_probs=113.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+++.+|+.||+.+....++.+..+..+.++.+++.+++.. .++++.+||||||||++||+||+.+|++
T Consensus 66 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 145 (302)
T TIGR01188 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV 145 (302)
T ss_pred hhcEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999988766655554445566778888888865 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+++.++++++ .|.|||++||+++++.. ||++.
T Consensus 146 llLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d~v~ 195 (302)
T TIGR01188 146 LFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYMEEADKLCDRIA 195 (302)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 999999999999999999999999975 48999999999999988 99875
No 28
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2.8e-34 Score=206.09 Aligned_cols=128 Identities=23% Similarity=0.409 Sum_probs=110.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+.....+....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999988755444433344556677778888864 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++++ .|.|||++|||++++.. ||++.
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~ 209 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLVETYRHRTL 209 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865 48899999999999987 89875
No 29
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=219.75 Aligned_cols=130 Identities=30% Similarity=0.434 Sum_probs=114.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.+||+||++.+|+++|+.||+.++.... +.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.
T Consensus 74 r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 74 RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred CCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999876532 2344455667778888888865 789999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|+++||||||+|||+..++.+.+.|+++.++.|.|+|++|||++++.. ||++++
T Consensus 154 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v 209 (353)
T PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV 209 (353)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999986668999999999999988 998863
No 30
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=220.84 Aligned_cols=130 Identities=31% Similarity=0.407 Sum_probs=115.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+|+++|+.||+.++....+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l 154 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999998765545455555567778888888865 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||||||+|||+..++.+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 155 LLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v 206 (369)
T PRK11000 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (369)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999876568999999999999987 998753
No 31
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-34 Score=204.55 Aligned_cols=129 Identities=34% Similarity=0.462 Sum_probs=110.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|++||+.+.....+.......+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 72 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 72 RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred ccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999987654433333444456677777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 202 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIA 202 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEE
Confidence 999999999999999999999999875558899999999999887 88875
No 32
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8.3e-35 Score=212.25 Aligned_cols=131 Identities=26% Similarity=0.291 Sum_probs=113.5
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.++.+||+||.+...+.+||+|.+.+++..+ ....++.++.++.+++.+++.. .++.+.+||||||||+.|||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL 153 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL 153 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH
Confidence 4578999999998888899999999875432 1112333456777888888865 7999999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++|+++||||||++||...+.++++++++++++.|.|||+++||++.+.+ ||++.
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999998789999999999999988 99864
No 33
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-34 Score=217.19 Aligned_cols=130 Identities=25% Similarity=0.417 Sum_probs=114.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+++.+|+.||+.++....+.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999998766555555455566777888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~ 212 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVA 212 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999976558999999999999988 99875
No 34
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-34 Score=206.55 Aligned_cols=130 Identities=26% Similarity=0.389 Sum_probs=111.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.+||+||++.+++.+|+.||+.+....+ +.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 356999999999999999999998764432 2334444556677778888865 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~ 208 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIA 208 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEE
Confidence 99999999999999999999999999875458899999999999987 99875
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.1e-34 Score=216.41 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=114.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+++.+|+.||+.++...++.+..+..+.++.+++.+++.. .++++.+||||||||++||+||+++|+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999988766655444444556667778888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||+|||+.++..++++|+++++ .|.|||++||+++++.. ||++.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~~~~~d~i~i 244 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCV 244 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999975 58999999999999988 998853
No 36
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=6.3e-34 Score=204.45 Aligned_cols=129 Identities=31% Similarity=0.377 Sum_probs=110.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+|+.+|+.||+.+.....+.......+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 469999999999999999999988655444333334456677778888864 6888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.++..+.+.+++++++.|.|||++||+++++..||++.
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~ 211 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRII 211 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEE
Confidence 99999999999999999999999997545889999999999987788875
No 37
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=8.6e-34 Score=214.95 Aligned_cols=130 Identities=29% Similarity=0.421 Sum_probs=114.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+|+++|+.||+.++....+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 42 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 42 RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred CCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 569999999999999999999998765544444445556777888888865 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v 173 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI 173 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999876668999999999999988 998753
No 38
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=8.8e-34 Score=218.25 Aligned_cols=130 Identities=25% Similarity=0.392 Sum_probs=115.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+|+++|+.||+.++....+.++.+.+..+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999998765555555555566778888888865 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||+|||+..+..+.+.|.++.++.|+|||++|||++++.. ||++.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v 237 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI 237 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999976568999999999999977 998853
No 39
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-33 Score=203.58 Aligned_cols=130 Identities=28% Similarity=0.383 Sum_probs=111.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|++|++.+++.+|+.||+.+....++.......+.++.+++.+++.. .++++.+||||||||++||||++.+|+
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 151 (220)
T cd03293 72 GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPD 151 (220)
T ss_pred cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999998999999987655444444444456677778888854 688899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 152 lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (220)
T cd03293 152 VLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV 203 (220)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999865558899999999999877 89875
No 40
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=219.13 Aligned_cols=129 Identities=28% Similarity=0.377 Sum_probs=113.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+|+++|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i 185 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI 185 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999998766555554445556777888888865 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||||||+|||+.+++.+.+.|.++.++.|+|||++|||++++.. ||++.
T Consensus 186 LLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999876568999999999999987 89875
No 41
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=211.47 Aligned_cols=131 Identities=23% Similarity=0.329 Sum_probs=115.7
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcC-C-ChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYN-I-PRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~ 78 (137)
.+.|+|+||+| .|.|.+|+.+.+.-....+. . .+++..+.+..+++.++++. .+.++.+|||||+|||.||.
T Consensus 87 G~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAm 166 (316)
T COG0444 87 GKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAM 166 (316)
T ss_pred CceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHH
Confidence 46799999997 58888999988876665543 2 35566778888889999964 28899999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|++.+|++||.||||++||+..+.+++++|++++++.|.++|+||||+..+.. ||+|++
T Consensus 167 ala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~V 226 (316)
T COG0444 167 ALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226 (316)
T ss_pred HHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEE
Confidence 99999999999999999999999999999999998889999999999999998 999874
No 42
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-34 Score=195.89 Aligned_cols=130 Identities=26% Similarity=0.313 Sum_probs=119.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++++|||||...+.|+||..||+..++.+.+-+..+.......+++.+|+.. .+.+|.+|||||+|||+||||++..|+
T Consensus 87 ~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~ 166 (228)
T COG4181 87 ARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPD 166 (228)
T ss_pred ccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCC
Confidence 4679999999999999999999999988876555556667778888889865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|+.||||.+||.....++.+++..++++.|.|.+++|||...+.+|+|+.
T Consensus 167 vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~ 217 (228)
T COG4181 167 VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL 217 (228)
T ss_pred EEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee
Confidence 999999999999999999999999999889999999999999999999874
No 43
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.1e-33 Score=203.56 Aligned_cols=129 Identities=26% Similarity=0.329 Sum_probs=110.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|++||+.+..........+..+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 83 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 162 (221)
T TIGR02211 83 KKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSL 162 (221)
T ss_pred hcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 469999999999988999999987654333333333445667777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.++..+.+.|++++++.|.|||++||+++++..+|+++
T Consensus 163 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~ 212 (221)
T TIGR02211 163 VLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL 212 (221)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 99999999999999999999999987655889999999999997798875
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=203.02 Aligned_cols=129 Identities=35% Similarity=0.598 Sum_probs=112.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|+.+|+.+....++....+..+.++.+++.+++.. .++++.+||||||||++||+|++.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l 152 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV 152 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999988765544444444556777888888864 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~ 203 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA 203 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999876558899999999999987 89875
No 45
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-34 Score=204.78 Aligned_cols=130 Identities=28% Similarity=0.383 Sum_probs=111.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHH--------hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSK--------LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia 77 (137)
++++||+||++++.+.++|.+|+..+.. +.++..++.+..+-..++.+|+.+ ...+..+|||||+|||+||
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIA 159 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIA 159 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHH
Confidence 3579999999999999999999986532 234433344455556667777744 6788999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||+++|+++|.|||+++|||.+.+.+++.|++++++.|.|||++.|+++.+.+ |||+.
T Consensus 160 RaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 160 RALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII 219 (258)
T ss_pred HHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence 999999999999999999999999999999999999899999999999999988 99874
No 46
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=203.63 Aligned_cols=129 Identities=26% Similarity=0.376 Sum_probs=110.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|+.||+.+.....+....+.++.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 87 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 166 (233)
T PRK11629 87 QKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRL 166 (233)
T ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999988654434344444556677888888865 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|++++++.|.|||++||+++++..+|++.
T Consensus 167 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~ 216 (233)
T PRK11629 167 VLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQL 216 (233)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEE
Confidence 99999999999999999999999987545899999999999998876653
No 47
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=204.48 Aligned_cols=129 Identities=22% Similarity=0.512 Sum_probs=122.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+|||+|.+..+|+.+||.|.+.|++.+.+.+..+++..+..|++.+++.. ..+++.+||.|++|++.+..|++++|++
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 479999999999999999999999999999999999999999999999865 7889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||||||.+.+.+.+.+.++++ .|.|||+|||.|+.++. ||+++.
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchHHHHHHHhhhhhe
Confidence 999999999999999999999999975 69999999999999999 999873
No 48
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.1e-33 Score=213.21 Aligned_cols=131 Identities=26% Similarity=0.359 Sum_probs=113.4
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhc--CCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLY--NIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++ .+++.+|+.+|+.+....+ +.++++..+.+..+++.+++. . .++++.+|||||+||++|||||
T Consensus 97 r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL 176 (331)
T PRK15079 97 RSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARAL 176 (331)
T ss_pred hCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 35799999998 5888899999998765443 245555566677788888884 3 6899999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|+++|+||||+|||+.++..++++|++++++.|.|+|++|||++.+.. ||++.+
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 177 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999976668999999999999988 998863
No 49
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.3e-33 Score=210.82 Aligned_cols=129 Identities=35% Similarity=0.611 Sum_probs=111.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+++.+|+.||+.++...++.+..+....++.+++.+++.. .++++.+||||||||++||+||+.+|+
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred hhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999987655444444444455667778888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~~~~~d~i~ 206 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLC 206 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 9999999999999999999999999975 58999999999999987 99875
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2.5e-33 Score=200.69 Aligned_cols=129 Identities=27% Similarity=0.407 Sum_probs=111.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++..|+.||+.++....+....+..+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999988999999988655444444444556677777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 202 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA 202 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 999999999999999999999999876558899999999999987 88874
No 51
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.5e-33 Score=200.82 Aligned_cols=128 Identities=25% Similarity=0.381 Sum_probs=111.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+.....+.......+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 569999999999998999999988654444434444556677888888864 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~ 208 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLVDRVAHRVI 208 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999865 48899999999999988 89875
No 52
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-33 Score=205.99 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=110.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||++|++.+++.+|+.||+.+.....+.......+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 102 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999998999999988655444333334455667777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. ||++.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999875558899999999999877 88875
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-33 Score=207.64 Aligned_cols=130 Identities=29% Similarity=0.368 Sum_probs=111.5
Q ss_pred CCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC--C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP--P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
++.+||+||++. .+...|+.||+.+.....+.+..+..+.+..+++.+++. . .++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 357999999973 333479999999876555555555666777888888885 3 689999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+++++++++.|.|||++|||++++.. ||++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999976558999999999999976 99975
No 54
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.3e-33 Score=199.56 Aligned_cols=128 Identities=24% Similarity=0.393 Sum_probs=110.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.++....+...++..+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 78 ~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 78 RKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred HheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999999999999988755444444444556677777778854 5788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++.+ .|.|+|++||+++++.. ||++.
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~~~~~d~i~ 207 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVI 207 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865 48899999999999987 89875
No 55
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.2e-34 Score=197.11 Aligned_cols=129 Identities=26% Similarity=0.335 Sum_probs=113.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+-++++||++++|.++||.+|+.++....-.-..+.++.++.+...+|+.. .++.+.+|||||||||++||+|+++-+|
T Consensus 71 RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi 150 (231)
T COG3840 71 RPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI 150 (231)
T ss_pred CChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe
Confidence 458999999999999999999988754311113445677888888888865 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||.|||.-+.+...++.+++.+.+.|++|+||.++++.. +|++.
T Consensus 151 lLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~ 201 (231)
T COG3840 151 LLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVV 201 (231)
T ss_pred EEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceE
Confidence 999999999999999999999999998889999999999999998 77764
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=4.1e-33 Score=209.28 Aligned_cols=128 Identities=25% Similarity=0.533 Sum_probs=113.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+++.+|+.||+.+....++.+.++..+.++.+++.+++.. .++++.+||||||||++||+|++++|++
T Consensus 75 ~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred hceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999998776666554555556778888888865 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||+|||+.+++.+++.+++++ + +.|||++||+++++.. ||++.+
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~ 204 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVII 204 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 99999999999999999999999985 3 6899999999999988 999853
No 57
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-33 Score=202.40 Aligned_cols=129 Identities=30% Similarity=0.444 Sum_probs=109.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI----PRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++.+++.+|+.||+.+.....+. ...+..+.++.+++.+++.. .++++.+||+|||||++|||||+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 5699999999999889999999876543322 22233445667777788854 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.|++++++.|+|||++||+++++.. ||++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 208 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999976558899999999999877 89875
No 58
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.4e-33 Score=200.09 Aligned_cols=128 Identities=26% Similarity=0.515 Sum_probs=111.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+|+.+|+.||+.+....++....+....+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999987655544444445566677888888864 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~i~ 207 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEVERLCDRVV 207 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999864 48899999999999887 88874
No 59
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-33 Score=200.99 Aligned_cols=130 Identities=26% Similarity=0.407 Sum_probs=111.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|+||++.+|+.+|+.||+.+.....+.........+..+++.+++.. .++++.+|||||+||++||+|++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999998999999987654444433334455677788888864 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 212 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVA 212 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999876558999999999999987 89875
No 60
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9.5e-33 Score=199.63 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=110.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+.....+....+..+.+..+++.+++.. .++++.+||||||||++||+||+.+|++
T Consensus 88 ~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~l 167 (228)
T PRK10584 88 KHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDV 167 (228)
T ss_pred heEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999998999999987644333333444556677788888854 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|++++++.|.|||++||+++++..||++.
T Consensus 168 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~ 217 (228)
T PRK10584 168 LFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRL 217 (228)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999987555889999999999987798874
No 61
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=7.6e-33 Score=197.98 Aligned_cols=128 Identities=33% Similarity=0.430 Sum_probs=107.9
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++. .++.+|+.||+.+.....+.........+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 154 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPD 154 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 46899999975 3567899999987654333333334455667777788854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||++.
T Consensus 155 llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~ 205 (211)
T cd03225 155 ILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVI 205 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999998754 8999999999999998 99875
No 62
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-33 Score=206.45 Aligned_cols=129 Identities=26% Similarity=0.323 Sum_probs=111.9
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++. +++..|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+|||||+||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999983 6777899999988755445555555566778888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.++..+.+.+++++++.|.|||++||+++++..||+++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~ 211 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVL 211 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999997655899999999999997799875
No 63
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-33 Score=198.11 Aligned_cols=129 Identities=24% Similarity=0.306 Sum_probs=108.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||++|++.+++.+|+.||+.+............++.+..+++.+++.. .++++.+||+|||||++||||++.+|++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999986533111111223445667777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 150 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 200 (211)
T cd03298 150 LLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV 200 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE
Confidence 999999999999999999999999876558999999999999987 89875
No 64
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-32 Score=198.68 Aligned_cols=128 Identities=20% Similarity=0.281 Sum_probs=110.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+.....+.+..+....+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred hheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 569999999998888999999988654444444444455667777788754 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.+.++++ .+.|+|++||+++++.. ||++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 208 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRML 208 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865 47899999999999988 88875
No 65
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.3e-32 Score=199.67 Aligned_cols=128 Identities=23% Similarity=0.309 Sum_probs=109.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC----------ChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI----------PRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~i 76 (137)
+.++|+||++.+++.+|+.||+.+....... ......+.+..+++.+++.. .++++.+||||||||++|
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHH
Confidence 4599999999999999999999876543221 12333445667777888864 688999999999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||++.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++.
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~ 214 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVT 214 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999875 58899999999999987 89875
No 66
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-32 Score=207.52 Aligned_cols=130 Identities=25% Similarity=0.332 Sum_probs=111.3
Q ss_pred CCcEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
++.|||+||++ ..+...||+||+.|+....+.+.++..+.+..+++.+++. . .++++.+||||||||++||+||+.+
T Consensus 104 ~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~ 183 (305)
T PRK13651 104 RRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAME 183 (305)
T ss_pred HhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhC
Confidence 35699999986 2333469999999876555556656666778888888985 4 6899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++++
T Consensus 184 P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~v 237 (305)
T PRK13651 184 PDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIF 237 (305)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEE
Confidence 999999999999999999999999999974 58999999999999877 998853
No 67
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-32 Score=201.54 Aligned_cols=129 Identities=25% Similarity=0.310 Sum_probs=110.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
..+||++|++.+++.+|+.+|+.+.....+....+..+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 458999999999998999999987654444444444456677778888854 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|+++.++.|.|||++|||++++.. ||++.
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865458999999999999987 88875
No 68
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=196.95 Aligned_cols=128 Identities=29% Similarity=0.387 Sum_probs=108.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.++|++|++.+++.+|+.+|+.+....+ .....++.+..+++.+++.. .++++.+||||||||++||+|++.+|+
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 346999999999999899999998764322 22223445667777888854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 203 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV 203 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE
Confidence 9999999999999999999999999976558899999999999977 88875
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=196.47 Aligned_cols=128 Identities=24% Similarity=0.522 Sum_probs=110.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+....++....+..+.+..+++.+++.. .++++.+||||||||++||+|++.+|++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred ccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999987655444444444556667777788854 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 199 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQMELVEELCDRVL 199 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhhhEEE
Confidence 999999999999999999999999875 47899999999999987 89875
No 70
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.7e-32 Score=198.72 Aligned_cols=128 Identities=28% Similarity=0.483 Sum_probs=109.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|++||+.++...++....+....++.+++.+++.. .++.+.+||||||||++||+|++.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 154 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF 154 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 459999999999999999999987654444333344455667777788854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++.+ .|.|||++||+++++.. ||++.
T Consensus 155 lllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 204 (232)
T cd03218 155 LLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRETLSITDRAY 204 (232)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999875 48899999999999888 89875
No 71
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-32 Score=197.14 Aligned_cols=128 Identities=31% Similarity=0.598 Sum_probs=110.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.++|++|++.+|+.+|+.||+.+.....+....+..+.++.+++.+++.. .++++.+||||||||++||||++.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 150 (211)
T cd03264 71 RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPS 150 (211)
T ss_pred HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999987655444443444556677777888854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.++++++ +.|||++||+++++.. ||++.
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~ 200 (211)
T cd03264 151 ILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVA 200 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEE
Confidence 9999999999999999999999999864 4899999999999987 89875
No 72
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.1e-32 Score=195.00 Aligned_cols=129 Identities=32% Similarity=0.384 Sum_probs=110.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+.....+.......+.+..+++.+++.. .++++.+||+||+||++|||||+.+|++
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l 155 (206)
T TIGR03608 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL 155 (206)
T ss_pred hCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999998999999988654434334444556677788888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
+||||||+|||+.+++.+.+.++++.+ .|.|+|++||+++.+..||++.+
T Consensus 156 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~d~i~~ 205 (206)
T TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVAKQADRVIE 205 (206)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhcCEEEe
Confidence 999999999999999999999999875 48899999999998766998753
No 73
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.1e-32 Score=198.90 Aligned_cols=129 Identities=27% Similarity=0.439 Sum_probs=110.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.+|+.+....++.......+.+..+++.+++.. .++++.+|||||+||++||||++.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999998888999999987655444443334455667777778854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++.++.|.|+|++||+++++..||++.
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~ 203 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLV 203 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEE
Confidence 99999999999999999999999987545889999999999997799875
No 74
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.6e-32 Score=210.11 Aligned_cols=128 Identities=26% Similarity=0.360 Sum_probs=110.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+|+++|+.||+.++.... ...+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 356999999999999999999998765422 22233445677778888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|+++.++.|.|+|++||+++++.. ||++.
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~ 203 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVV 203 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999976558999999999999987 89875
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-32 Score=200.03 Aligned_cols=129 Identities=30% Similarity=0.510 Sum_probs=110.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC---CCCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP---PGNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.++|+||++.+++.+|+.||+.++....+.......+.+..+++.+++. ..++++.+||||||||++||||++.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999899999998765544443344445567777888886 358889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~ 207 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA 207 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999876458899999999999877 88875
No 76
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-32 Score=207.04 Aligned_cols=130 Identities=20% Similarity=0.267 Sum_probs=111.1
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.|+|+||++ .++|.+|+.+++......+ +....+.++.+..+++.+++.. .++++++|||||+||++|||||
T Consensus 89 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL 168 (326)
T PRK11022 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAI 168 (326)
T ss_pred CCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHH
Confidence 3699999998 5788899999887655433 3344455667778888888852 4789999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|++||+||||+|||+..+..++++|++++++.|.|+|++|||++.+.+ ||++.+
T Consensus 169 ~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~v 226 (326)
T PRK11022 169 ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIV 226 (326)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999986668999999999999977 999853
No 77
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-32 Score=205.00 Aligned_cols=128 Identities=30% Similarity=0.427 Sum_probs=110.5
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||+||++ .+++ .|+.||+.+.....+.+..+..+.++.+++.+++. . .++++.+||||||||++|||||+.+
T Consensus 85 ~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~ 163 (290)
T PRK13634 85 KKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAME 163 (290)
T ss_pred hhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4699999987 4554 69999998875544455555556677888888985 4 5889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++||||||+|||+.++..+.+++++++++.|.|||++|||++++.. ||++.
T Consensus 164 P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~ 217 (290)
T PRK13634 164 PEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIV 217 (290)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999976568999999999999987 99875
No 78
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.8e-32 Score=201.80 Aligned_cols=129 Identities=25% Similarity=0.363 Sum_probs=109.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|+||++.+++.+|+.||+.+..... ..+.......+..+++.+++.. .++++.+||||||||++||||++.+|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999999998764332 2233333445666777888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|+++.++.|.|||++|||++++.. ||++.
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~ 215 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY 215 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE
Confidence 9999999999999999999999999876558899999999999988 88875
No 79
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-32 Score=206.54 Aligned_cols=131 Identities=18% Similarity=0.221 Sum_probs=112.8
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++.|+|+||++ .+++.+|+.+++......+ +....+..+.+..+++.+++. . .++++.+|||||+||++|||||+
T Consensus 91 r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~ 170 (327)
T PRK11308 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM 170 (327)
T ss_pred hCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH
Confidence 35699999998 5888899999987665443 334445556677888888885 3 58899999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
.+|++||+||||+|||+..+..++++|++++++.|.|+|++|||++.+.. ||++.+
T Consensus 171 ~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 171 LDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999987668999999999999988 998853
No 80
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-33 Score=193.92 Aligned_cols=129 Identities=26% Similarity=0.436 Sum_probs=114.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChh--HHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRS--SVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
..|||+||+++.|..+||+||+...+.....+.+ +.+..++.+++.+.+.+ .+.+..+||||||+|+.|||||+.+|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 4589999999999999999999987776553333 34445778999998866 78999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+++||||||+|+||.+..++.++++.++. .|..|+++-|+..+... |||.++
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVREtL~i~dRaYI 211 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVRETLDICDRAYI 211 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHHHHHhhhheEEE
Confidence 99999999999999999999999999975 59999999999999888 998753
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-32 Score=198.84 Aligned_cols=129 Identities=26% Similarity=0.363 Sum_probs=107.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh--------cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL--------YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+.++|+||++.+++.+|+.+|+.+.... .+.......+.+..+++.+++.. .++++.+||||||||++|||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 78 RQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred hccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHH
Confidence 4699999999999989999999764321 11111223345566777788854 68899999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++.+|+++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~ 216 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV 216 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999875558899999999999986 89875
No 82
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.7e-32 Score=197.07 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=108.1
Q ss_pred EEEEeccCCCCCCCCHHHHHHHHHHh--cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 10 LGFMPQEIALFEEFTISETFAFFSKL--YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+|++|++.+++.+|+.||+.++... ......+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 56 ~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 135 (230)
T TIGR01184 56 RMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV 135 (230)
T ss_pred heEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 58999999999999999999875321 12333344455677777888854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|.++.++.|.|||++||+++++.. ||++.
T Consensus 136 llLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 186 (230)
T TIGR01184 136 LLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVV 186 (230)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999876558899999999999987 89875
No 83
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=191.82 Aligned_cols=131 Identities=26% Similarity=0.332 Sum_probs=119.6
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+...-|.|||++.++|.+++.||+.|+.++.++++.+-.+....++..+|+.. .++++.+||||||||+.|||||+.+|
T Consensus 72 PgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 72 PGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence 33456899999999999999999999999999988777778888888899865 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|+||||++.||.-.++.+.+++-++.+..|+.++++|||++++-- +++.+
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv 204 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV 204 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE
Confidence 99999999999999999999999999887789999999999999876 77764
No 84
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-32 Score=202.33 Aligned_cols=128 Identities=29% Similarity=0.347 Sum_probs=109.2
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++. .++..|+.+|+.+.....+.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ 158 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPD 158 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 46999999973 4455799999987654434444455566778888888854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|++++++ |.|||++||+++++.. ||++.
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~ 209 (274)
T PRK13647 159 VIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVI 209 (274)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999754 8999999999999976 99875
No 85
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.3e-32 Score=194.23 Aligned_cols=128 Identities=29% Similarity=0.436 Sum_probs=109.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++.+++.+|+.||+.++.. ..+....+..+.+..+++.+++.. .++++.+|||||+||++||+|++.+|+
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred hcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 569999999999998999999987542 223333334455667777778754 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~~~~~d~i~ 206 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRVI 206 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999975 48899999999999987 99875
No 86
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.7e-32 Score=205.32 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=110.8
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.|+|+||++ .+++.+|+.+++......+ +.+..+..+.+..+++.++++. .++++++|||||+||++|||||
T Consensus 97 ~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL 176 (330)
T PRK09473 97 EQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 176 (330)
T ss_pred CCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 4799999998 6888899999987665443 2344445556677777788753 2678999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|++||+||||+|||+..+..++++|++++++.|.|+|++|||++.+.. ||++++
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~v 234 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLV 234 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999987668999999999999987 999864
No 87
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-32 Score=208.46 Aligned_cols=124 Identities=26% Similarity=0.449 Sum_probs=108.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.+||+||++.+|+++|+.||+.+.... ...+.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 75 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hCCEEEEcCCcccCCCCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 45799999999999999999999875321 12345667777788865 689999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+..++.+.+.|+++.++.|.|+|++|||++++.. ||++.
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~ 200 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVV 200 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999976558999999999999988 89875
No 88
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5e-32 Score=194.22 Aligned_cols=130 Identities=26% Similarity=0.375 Sum_probs=108.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|++|++.+|+.+|+.||+.+............+..++.+++.+++.. .++++.+||+||+||++||||++.+|+
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999998999999986543211112223445666777788854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~ 200 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIA 200 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE
Confidence 9999999999999999999999999876558899999999999877 88875
No 89
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=214.20 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=114.8
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCCC-C--CCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLPP-G--NQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.|+|+||+| .+.|.+|+.+.+.-....++ .+.++.++.+.++++.+++++ . ++++++||||||||+.||+||
T Consensus 90 g~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmAL 169 (539)
T COG1123 90 GKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMAL 169 (539)
T ss_pred cccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHH
Confidence 36799999997 36666899888876666654 346677778888888999965 3 359999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|++||+||||++||+..+.+++++|++++++.|.++|+||||+..+.+ |||+.+
T Consensus 170 a~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 170 ALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEE
Confidence 999999999999999999999999999999998889999999999999999 999864
No 90
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-32 Score=202.62 Aligned_cols=129 Identities=32% Similarity=0.446 Sum_probs=110.1
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
++.|||+||++ .+++ .|+.||+.+.....+.+..+..+.+..+++.+++. . .++++.+||||||||++|||||+.
T Consensus 84 ~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~ 162 (286)
T PRK13646 84 RKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM 162 (286)
T ss_pred HhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 45799999987 4555 59999998865444455555566677788888885 4 578999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+++++++++.|.|||++||+++++.. ||++.
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~ 217 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVI 217 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999976568999999999999876 89875
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.9e-32 Score=194.88 Aligned_cols=127 Identities=38% Similarity=0.674 Sum_probs=109.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||++|++.+++.+|+.+|+.+....++.+..+..+.+..+++.+++.. .++++.+||+||+||++||||++.+|++
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999988999999988765544444444455667777788854 6788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++++ +.|||++||+++++.. ||++.
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~ 203 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIA 203 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEE
Confidence 999999999999999999999999864 4899999999999987 89875
No 92
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-32 Score=202.13 Aligned_cols=129 Identities=30% Similarity=0.347 Sum_probs=111.3
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++. +++..|+.||+.++....+....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999983 6667899999988655444444445566778888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++..||++.
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~ 211 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVI 211 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE
Confidence 999999999999999999999999997655899999999999998899875
No 93
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-32 Score=202.20 Aligned_cols=129 Identities=30% Similarity=0.456 Sum_probs=110.5
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
++.+||+||++ .+|+ .|+.||+.|.....+.+..+....+..+++.+++. . .++++.+||||||||++||+||+.
T Consensus 83 ~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 83 RKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 35699999987 5665 59999999876554555555666777888888884 3 588999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|+++||||||+|||+.++..+.+.++++++ .|.|||++|||++++.. ||++.+
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~~~~~dri~~ 216 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYL 216 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999875 48999999999999977 998853
No 94
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-32 Score=198.76 Aligned_cols=130 Identities=28% Similarity=0.359 Sum_probs=107.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHh--------cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKL--------YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia 77 (137)
++.+||+||++.+++.+|+.||+.+.... .+.......+.+..+++.+++.. .++++.+||||||||++||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred HhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 35699999999999999999999764211 01111223445666777778754 6889999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||+.+|+++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~ 217 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV 217 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 999999999999999999999999999999999875558899999999999977 89875
No 95
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4.1e-32 Score=193.90 Aligned_cols=124 Identities=26% Similarity=0.444 Sum_probs=106.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|+.||+.++...++.. .+.++.+++.+++.. .++++.+||||||||++||+|++.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIR----KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred hhEEEecCCCccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 46999999999999999999998865443321 234556667777754 6888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++++ .|.|+|++||+++++.. ||++.
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~ 197 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIG 197 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEE
Confidence 999999999999999999999999875 58899999999999987 88874
No 96
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-31 Score=196.67 Aligned_cols=129 Identities=33% Similarity=0.453 Sum_probs=109.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHH-hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSK-LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.++|++|++.+++..|+.||+.++.. ..+.......+.+..+++.+++.. .++++.+||||||||++||||++.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p 163 (250)
T PRK11264 84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163 (250)
T ss_pred hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence 3569999999999998999999987533 223333334455667777788865 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|+++.+ .|.|||++||+++++.. ||++.
T Consensus 164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~~~~~d~i~ 215 (250)
T PRK11264 164 EVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAI 215 (250)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999875 48899999999999987 89875
No 97
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=5.2e-32 Score=209.71 Aligned_cols=129 Identities=21% Similarity=0.296 Sum_probs=110.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhc--CCC--hhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLY--NIP--RSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++++||++|++.+++.+|++||+.+....+ ... .....+.++.+++.+++.. .++++.+||||||||++|||||+
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~ 155 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA 155 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 467999999999988999999998754322 111 2234556778888888865 68999999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|+++||||||+|||+.++.+++++|+++++ .|.|||++|||++++.+ ||++.
T Consensus 156 ~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii 210 (402)
T PRK09536 156 QATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELV 210 (402)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999975 58899999999999987 99875
No 98
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-33 Score=203.73 Aligned_cols=125 Identities=26% Similarity=0.418 Sum_probs=111.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+++||||||+..+||++||+.|+.|+.... .....+.+...+|+.+ .+++|.+|||||||||+|+|||+..|+
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~ 148 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCC
Confidence 467999999999999999999999875421 2334556666778865 799999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||||||.++||..-+.+++..+++++++.+.-|+++||.++++.+ ||++++
T Consensus 149 LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~ 201 (352)
T COG4148 149 LLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVV 201 (352)
T ss_pred eeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEE
Confidence 9999999999999999999999999998888999999999999999 998863
No 99
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.4e-32 Score=193.91 Aligned_cols=128 Identities=24% Similarity=0.356 Sum_probs=105.6
Q ss_pred CcEEEEeccCCCC--CCCCHHHHHHHHHHhcC----CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALF--EEFTISETFAFFSKLYN----IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|++|++.++ +.+|+.||+.+...... .......+.++.+++.+++.. .++++.+||||||||++|||||
T Consensus 68 ~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 68 KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARAL 147 (213)
T ss_pred hheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 5699999998763 33799999987532211 112233455677777888854 6889999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~ 203 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVL 203 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999999999875 58899999999999987 89875
No 100
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.98 E-value=6.4e-32 Score=194.41 Aligned_cols=126 Identities=25% Similarity=0.448 Sum_probs=104.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHc-CCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVL-DLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|+||++.+++.+|++||+.++..... ..+....+..+.+.+ ++.. .++++.+||||||||++||||++.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999988654332 122233344445544 3443 578899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 203 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAY 203 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEE
Confidence 9999999999999999999999999875 58899999999999888 88875
No 101
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=9.6e-33 Score=190.92 Aligned_cols=127 Identities=27% Similarity=0.418 Sum_probs=113.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHH-HHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAF-FSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.++|+|||+.+++.+||+.||+.- +....+.++.+..+..+.++..+|+.+ .+.++..|||||+||++|||||+.+|+
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~ 172 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPE 172 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCc
Confidence 458999999999999999999864 334456778888888889999999966 689999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
++|+|||||.|||.-.-+++..++++++ .|+|.+++||.|.++.+ +..+
T Consensus 173 vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FAR~Vss~v 222 (256)
T COG4598 173 VMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFARDVSSHV 222 (256)
T ss_pred eEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHHHhhhhhe
Confidence 9999999999999999999999999986 59999999999999988 4443
No 102
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=9.7e-32 Score=218.38 Aligned_cols=130 Identities=25% Similarity=0.306 Sum_probs=112.7
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.|||++|++ .+++.+||.||+.+....+ +.+..+.++.+..+++.+++.. .++++.+|||||||||+||+||
T Consensus 104 ~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL 183 (623)
T PRK10261 104 ADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMAL 183 (623)
T ss_pred CCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHH
Confidence 4699999998 6888899999999876543 4445555566778888888852 4789999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|++|||||||+|||+.++..+.+++++++++.|.|||++|||++++.. ||++.+
T Consensus 184 ~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999976568999999999999988 999863
No 103
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1e-31 Score=200.11 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=110.2
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++. .+...|+.||+.+.....+.+..+..+.++.+++.+++.. .++++.+|||||+||++|||||+.+|+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 56999999973 3345799999987654444455555566778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~ 213 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF 213 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999976558999999999999986 99875
No 104
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.98 E-value=9e-32 Score=191.82 Aligned_cols=124 Identities=26% Similarity=0.329 Sum_probs=103.9
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||++|++. .++.+|+.||+.++....+ . ....+..+++.+++.. .++++.+||||||||++||||++.+|+
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence 46999999974 3345799999987643322 1 1234566777788864 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|+++++ .|.|+|++||+++++.. ||++.
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~~~~~d~i~ 197 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYEFLAKVCDRVL 197 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999865 48899999999999987 89875
No 105
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.98 E-value=1.1e-31 Score=194.02 Aligned_cols=127 Identities=27% Similarity=0.386 Sum_probs=105.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHcCCCC-CCCC--CCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPR-SSVEAVIKDLQLVLDLPP-GNQL--CSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~~--~~~LS~G~kqrv~ia~al~~ 82 (137)
++.+||+||++.++ .+|+.||+.+.....+... .+..+.+..+++.+++.. .+++ +.+||||||||++||+|++.
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 35699999999888 7899999987654433222 223455667777888854 4555 59999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+.|+++++ + .|||++||+++++.. ||++.
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~~~~~d~i~ 211 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQAARVADRTA 211 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHHHHhCCEEE
Confidence 9999999999999999999999999999875 3 899999999999987 89875
No 106
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=8.7e-32 Score=200.47 Aligned_cols=129 Identities=31% Similarity=0.389 Sum_probs=111.0
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++. +++..|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+|||||+||++||+|++.+|+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999984 6677899999987654444445555566777888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++..||++.
T Consensus 164 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~ 214 (282)
T PRK13640 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVL 214 (282)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999987655899999999999997799875
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.4e-31 Score=199.85 Aligned_cols=127 Identities=26% Similarity=0.341 Sum_probs=108.5
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||+||++ .++ .+|+.||+.+....++...++..+.++.+++.+++. . .++++.+||||||||++|||||+.+
T Consensus 85 ~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~ 163 (287)
T PRK13641 85 KKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYE 163 (287)
T ss_pred hceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4699999997 355 579999998765444444445555677788888885 3 6899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||+++
T Consensus 164 p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~~~~~d~v~ 216 (287)
T PRK13641 164 PEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDVAEYADDVL 216 (287)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999864 58999999999999987 99875
No 108
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.98 E-value=1.7e-31 Score=194.26 Aligned_cols=129 Identities=27% Similarity=0.500 Sum_probs=109.6
Q ss_pred CcEEEEe-ccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMP-QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~-q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++ |.+.+++.+|+.||+.+....++....+..+.+..+++.+++.. .++++.+||||||||++||+|++.+|+
T Consensus 94 ~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 173 (236)
T cd03267 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPE 173 (236)
T ss_pred ccEEEEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 4689998 55678888999999987655544444444556667777778854 688899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|++++++.+.|||++||+++++.. ||++.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 225 (236)
T cd03267 174 ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225 (236)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999876557899999999999987 88875
No 109
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.2e-31 Score=202.80 Aligned_cols=129 Identities=28% Similarity=0.350 Sum_probs=109.0
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
++.+||+||++ .+|+ .|+.||+.++....+.+..+..+.+..+++.+++. . .++++.+||||||||++|||||+.
T Consensus 115 ~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~ 193 (320)
T PRK13631 115 RRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193 (320)
T ss_pred HhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 35699999997 4665 49999998765433444445555667788888885 3 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|+++||||||+|||+.++..+.+.|.++++ +|.|||++||+++++.. ||++.+
T Consensus 194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999875 48999999999999876 998753
No 110
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.98 E-value=2.7e-31 Score=191.58 Aligned_cols=128 Identities=23% Similarity=0.280 Sum_probs=109.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||++|++.+++.+|+.||+.+.....+.......+.+..+++.+++.. .++++.+||+|||||++||||++.+|+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP 169 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999987544334333344456667777788754 477899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 170 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 170 ILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcceeE
Confidence 9999999999999999999999999864 48999999999999986 99875
No 111
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=1.2e-31 Score=213.91 Aligned_cols=129 Identities=22% Similarity=0.306 Sum_probs=111.8
Q ss_pred CcEEEEecc-CCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQE-IALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||+ +.+++.+|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 109 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~ 188 (520)
T TIGR03269 109 KRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPF 188 (520)
T ss_pred hcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 459999997 678888999999988655444444445566777888888865 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|||||||+|||+.++..+.++|+++.++.|.|||++|||++.+.. ||++.
T Consensus 189 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 189 LFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999876568999999999999987 89875
No 112
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=1.6e-31 Score=194.56 Aligned_cols=129 Identities=32% Similarity=0.420 Sum_probs=109.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHH-hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSK-LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+.++|++|++.+++.+|+.+|+.+... ..+....+..+.+..+++.+++.. .++++.+||+|||||++||||++.+|
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 155 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKP 155 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCC
Confidence 3469999999999998999999987532 223333444455667777888854 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|+++++ .|.|+|++||+++++.. ||++.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 207 (240)
T PRK09493 156 KLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFAEKVASRLI 207 (240)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999875 48999999999999987 89875
No 113
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.98 E-value=2.4e-31 Score=195.54 Aligned_cols=128 Identities=25% Similarity=0.386 Sum_probs=109.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHH-HhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.++|++|++.+++.+|++||+.+.. ..........+..+..+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 92 ~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (257)
T PRK10619 92 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 171 (257)
T ss_pred hceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 56999999999999999999997643 2233333444556677788888864 37889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.+++.+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 172 ~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 172 EVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999875 48999999999999987 89875
No 114
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=202.18 Aligned_cols=130 Identities=19% Similarity=0.271 Sum_probs=107.7
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhc---C---CChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHH
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLY---N---IPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVS 75 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ 75 (137)
+.|+|+||++. +++.+|+.+++......+ + ....+..+.+..+++.+++.. .++++.+|||||+||++
T Consensus 89 ~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~ 168 (330)
T PRK15093 89 HNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVM 168 (330)
T ss_pred CCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 46999999985 677889999987543211 1 011233456677888888853 37899999999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
||+||+.+|++||+||||+|||+.++..+.++|+++.++.|.|+|+||||++++.. ||++.+
T Consensus 169 iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 169 IAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred HHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999986568999999999999988 998853
No 115
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.98 E-value=2.3e-31 Score=192.14 Aligned_cols=130 Identities=26% Similarity=0.308 Sum_probs=105.7
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCCh-hHH-HHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPR-SSV-EAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++ .+++.+|+++|+.+.....+... ... ......+++.+++. . .++++.+||||||||++||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 35799999998 46777999999987654333221 111 22224566677773 3 5888999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE
Confidence 999999999999999999999999999999876448899999999999987 89875
No 116
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.98 E-value=1.4e-31 Score=196.99 Aligned_cols=123 Identities=25% Similarity=0.318 Sum_probs=105.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+... . .....+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999998999999987421 1 12344566777788854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|+++.++.|.|||++|||++++.. ||++.
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~ 205 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL 205 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865568899999999999877 89875
No 117
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.3e-31 Score=194.35 Aligned_cols=129 Identities=22% Similarity=0.340 Sum_probs=107.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|+.||+.+.............+.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 71 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 150 (232)
T PRK10771 71 RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI 150 (232)
T ss_pred ccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 469999999999999999999976532111112223445667777788854 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++.++.|.|+|++||+++++.. ||++.
T Consensus 151 llLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 201 (232)
T PRK10771 151 LLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSL 201 (232)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999875558899999999999987 88874
No 118
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=1.5e-31 Score=198.42 Aligned_cols=128 Identities=27% Similarity=0.338 Sum_probs=109.6
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||++|++. .++..|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+||+||+||++||+|++.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPE 156 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999985 3566899999987655444455555566777788888855 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.++..+++.++++++ .|.|||++||+++++..||++.
T Consensus 157 lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~~~~d~v~ 206 (274)
T PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEELHDADRII 206 (274)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHhhCCEEE
Confidence 9999999999999999999999999875 5899999999999997799875
No 119
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.98 E-value=2.8e-31 Score=194.11 Aligned_cols=127 Identities=27% Similarity=0.415 Sum_probs=108.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+++ .|+.||+.+.....+ .+..+..+.+..+++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 356999999999888 899999987654433 23334455667777788875 3 5788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999864 4899999999999987 89875
No 120
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.2e-31 Score=216.30 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=112.4
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++.|+|+||++ .+++.+|+.+|+.+....++. ...+..+.+..+++.+++. . .++++.+||||||||++|||||+
T Consensus 400 ~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~ 479 (623)
T PRK10261 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479 (623)
T ss_pred cCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35699999997 588899999999876544433 2334455677788888885 3 68999999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
.+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++.+
T Consensus 480 ~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v 536 (623)
T PRK10261 480 LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 536 (623)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999976568999999999999988 998863
No 121
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-31 Score=193.35 Aligned_cols=129 Identities=28% Similarity=0.431 Sum_probs=108.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHH-HHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFF-SKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.++|++|++.+++.+|+.||+.+. ....+....+....+..+++.+++.. .++++.+||||||||++||||++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 34699999999999999999999753 22333333334455667777778854 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.++++++ .|.|+|++||+++++.. ||++.
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~ 212 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVV 212 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999864 48999999999999977 88875
No 122
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=2.5e-31 Score=195.72 Aligned_cols=129 Identities=28% Similarity=0.363 Sum_probs=107.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh-----
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL----- 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~----- 81 (137)
+.++|++|++.+++.+|++||+.+...............++.+++.+++.. .++.+.+||||||||++||+||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~ 155 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEP 155 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 469999999988888999999987543222222333445667777778854 68899999999999999999999
Q ss_pred -cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 -HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 -~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 212 (258)
T PRK13548 156 DGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV 212 (258)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE
Confidence 59999999999999999999999999999874458899999999999987 99875
No 123
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-31 Score=194.97 Aligned_cols=126 Identities=28% Similarity=0.408 Sum_probs=106.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.+||+||++.+++ +|+.||+.+.....+.+..+..+.+..+++.+++. . .++++.+|||||+||++|||||+.
T Consensus 93 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 93 KNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 46999999998888 89999998765444444433444566677766652 2 478899999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+.|+++. + +.|||++||+++++.. ||+++
T Consensus 172 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 172 KPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999999985 3 6899999999999977 99875
No 124
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.9e-31 Score=197.62 Aligned_cols=130 Identities=32% Similarity=0.385 Sum_probs=109.5
Q ss_pred CCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.+||++|++. .++.+|+.||+.+.....+....+....+..+++.+++.. .++++.+|||||+||++|||||+.+|
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356999999974 6777899999987654433444444556677788888854 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++||||||+|||+.+++.+++.|++++++.+.|||++||+++++..||++.
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~ 213 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVI 213 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEE
Confidence 9999999999999999999999999987544589999999999987788874
No 125
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.5e-31 Score=191.55 Aligned_cols=130 Identities=31% Similarity=0.404 Sum_probs=112.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|++|++.+|+.+|+.+|+.+.....+.......+.+..+++.+++.. .++.+.+||+||+||++||||++.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999988999999987655444444444556677788888854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~ 202 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA 202 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999876458999999999999877 89875
No 126
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.1e-31 Score=198.20 Aligned_cols=130 Identities=28% Similarity=0.339 Sum_probs=110.2
Q ss_pred CCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.+||+||++. .+...|+.+|+.+.....+.+..+..+.++.+++.+++.. .++++.+||||||||++||+||+.+|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 457999999974 2334689999988655444444555666778888888865 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++||||||+|||+.++..+.+.+++++++.|.|||++||+++++..||++.
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~ 215 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRII 215 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEE
Confidence 9999999999999999999999999997555899999999999998799875
No 127
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=2.6e-31 Score=190.59 Aligned_cols=130 Identities=23% Similarity=0.284 Sum_probs=114.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-------C-----CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-------N-----IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRV 74 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv 74 (137)
..|+..||.+.+|++|||.||+......+ . ....+..+.+..+++.+++.. .+++.++||+|||+|+
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 35788999999999999999998764311 1 123456667778888999965 7999999999999999
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
.|||||+.+|++|+||||.+||.+....++.+.|++++++.|.||++|.|||+.+.+ ||++++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~V 222 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVV 222 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEe
Confidence 999999999999999999999999999999999999987678999999999999999 999875
No 128
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.4e-31 Score=196.78 Aligned_cols=129 Identities=28% Similarity=0.398 Sum_probs=109.2
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||++|++. .+...|+.+|+.+.....+.......+.++.+++.+++.. .++.+.+||||||||++|||||+.+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ 157 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQ 157 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999974 3345799999987654334444445556777888888864 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 158 llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~ 209 (277)
T PRK13652 158 VLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY 209 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999976558999999999999976 89875
No 129
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-31 Score=197.29 Aligned_cols=130 Identities=26% Similarity=0.357 Sum_probs=109.9
Q ss_pred CCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+.+||++|++. +++..|+.||+.++....+....+..+.++.+++.+++.. .++++.+|||||+||++|||||+.+|
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p 159 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 356999999984 5667899999987654334444444556677777778754 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++||||||+|||+.+++.+.+.++++.++.|.|||++||+++++..||+++
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~ 211 (277)
T PRK13642 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRIL 211 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 9999999999999999999999999997655899999999999997799875
No 130
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=4.1e-31 Score=191.53 Aligned_cols=129 Identities=24% Similarity=0.258 Sum_probs=107.4
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC---C-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP---P-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++. +++.+|+.+|+.+.....+.......+.+..+++.+++. . .++++.+||||||||++||||++
T Consensus 62 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~ 141 (230)
T TIGR02770 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL 141 (230)
T ss_pred heeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence 46999999985 556689999987654433322333345567777888885 2 57889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 142 ~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999876558899999999999987 89875
No 131
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=5e-31 Score=191.66 Aligned_cols=130 Identities=29% Similarity=0.412 Sum_probs=110.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|++|++.+|+.+|+.||+.+.....+....+..+.+..+++.+++.. .++++.+|||||+||++||||++.+|+
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999998999999987654433333444455666777788854 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++|||||+|||+.+++.+.+.++++..+.|.|+|++||+++++.. ||++.
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~ 201 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA 201 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999875458999999999999887 89875
No 132
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=194.41 Aligned_cols=129 Identities=22% Similarity=0.287 Sum_probs=106.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh----------cCC-----ChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL----------YNI-----PRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQA 71 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~----------~~~-----~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~k 71 (137)
..++|+||++.+++.+|+.||+.+.... ... ...+....+..+++.+++.. .++++.+||||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHH
Confidence 3489999999999999999999875321 000 01122234556667777754 6889999999999
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||++||+|++.+|++|||||||+|||+.++..+.+.|.+++++.|.|||++||+++++.. ||++.
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~ 225 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY 225 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999876558899999999999987 89875
No 133
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=5e-31 Score=193.32 Aligned_cols=130 Identities=28% Similarity=0.402 Sum_probs=109.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHH-hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSK-LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.++|++|++.+++..|+.||+.+... ..+.........+..+++.+++.. .++.+.+|||||+||++||||++.+|
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCC
Confidence 4579999999999998999999987532 223333334455667777778754 67889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|+++.++.|.|+|++||+++++.. ||++.
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218 (252)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999876558999999999999976 88875
No 134
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=5.3e-31 Score=192.03 Aligned_cols=127 Identities=24% Similarity=0.333 Sum_probs=107.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY--------NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+.++|++|++.+++.+|+.||+.++.... +.........++.+++.+++.. .++++.+|||||+||++|||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 35999999999999999999998754311 1112233455677777788864 68899999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++.+|+++||||||+|||+.++..+.+.++++.+ +.|||++||+++++.. ||++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~ 213 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVT 213 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999864 5899999999999987 99875
No 135
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=3.3e-31 Score=186.92 Aligned_cols=120 Identities=28% Similarity=0.454 Sum_probs=100.3
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.++|++|++. ++ ..|+.||+.+.....+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 68 ~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 146 (190)
T TIGR01166 68 QRVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRP 146 (190)
T ss_pred hhEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 46999999973 45 4699999987654334444444456677777788854 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++
T Consensus 147 ~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~~~ 190 (190)
T TIGR01166 147 DVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDVDLA 190 (190)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeeccccC
Confidence 99999999999999999999999999875 488999999998753
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=192.44 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=106.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.+||+||++.+++.+|+.||+.+.....+. +..+..+.+..+++.+++. ..++++.+||||||||++||||+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 5699999999888889999999876543222 2233445566677777763 24788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++. + +.|+|++||+++++.. ||++.
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 216 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVA 216 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEE
Confidence 99999999999999999999999999999985 3 6899999999999976 89875
No 137
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=192.86 Aligned_cols=128 Identities=25% Similarity=0.460 Sum_probs=108.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++.+++.+|+.||+.+..... .....+....+..+++.+++.. .++++.+|||||+||++||||++.+|+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 56999999999999899999998754332 1223334455667777778754 688899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~ 208 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAY 208 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEE
Confidence 9999999999999999999999999864 58899999999998877 88864
No 138
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=3.3e-31 Score=195.32 Aligned_cols=129 Identities=23% Similarity=0.303 Sum_probs=107.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY--------NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+.++|+||++.+++.+|+.+|+.+..... .......+..++.+++.+++.. .++++.+||+|||||++|||
T Consensus 86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 165 (262)
T PRK09984 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR 165 (262)
T ss_pred hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHH
Confidence 46899999999999999999998653210 1111223445667777788854 68899999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++.+|++|||||||+|||+.+++.+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 166 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 166 ALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred HHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999975558999999999999877 88875
No 139
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.97 E-value=5.6e-31 Score=189.63 Aligned_cols=130 Identities=25% Similarity=0.310 Sum_probs=110.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.++|+||++.+|+.+|+.+|+.+....+. ....+....+..+++.+++.. .++++.+||+|||||++||||++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 3569999999999998999999988654432 233444556677778888854 68889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++||||||+|||+.++..+.+.++++.++.+.|+|++||+++....||++.
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~ 212 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIV 212 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE
Confidence 9999999999999999999999999987655899999999999765588874
No 140
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=7.5e-31 Score=193.80 Aligned_cols=129 Identities=24% Similarity=0.305 Sum_probs=107.8
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHh-cCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKL-YNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++ .+++.+|+.||+.+.... ...........+..+++.+++. . .++++.+||||||||++||||++.
T Consensus 88 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~ 167 (265)
T TIGR02769 88 RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAV 167 (265)
T ss_pred hceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 4699999997 466778999999765432 2233333445566777788884 3 588999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|++|||||||+|||+.++..+.+.|+++.++.|.|||++||+++.+.. ||++.
T Consensus 168 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~ 222 (265)
T TIGR02769 168 KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222 (265)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE
Confidence 9999999999999999999999999999876558999999999999987 89875
No 141
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=3.3e-31 Score=208.73 Aligned_cols=130 Identities=25% Similarity=0.331 Sum_probs=115.4
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+++-++||+| ++.|.+||.+++..+...++.. ..+.++.+..+++..+++. .++++++||||||||++|||||+.
T Consensus 367 ~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~ 446 (539)
T COG1123 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALAL 446 (539)
T ss_pred hheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhc
Confidence 4677888887 6999999999999887765432 3445566888888889864 699999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|+++++|||||.||+..+..+.++|++++++.|.|.+|||||+..+.+ |||+.+
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEE
Confidence 9999999999999999999999999999998889999999999999999 999864
No 142
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=196.35 Aligned_cols=128 Identities=30% Similarity=0.396 Sum_probs=106.2
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.++|++|++. +++ .|+.||+.+.....+.......+.+..+++.++++ . .++++.+||||||||++|||||+.+
T Consensus 90 ~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~ 168 (289)
T PRK13645 90 KEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMD 168 (289)
T ss_pred ccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 46999999973 444 59999998765433333334445566677778884 3 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.+++.+.+.|+++.++.|+|||++||+++++.. ||++.
T Consensus 169 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~ 222 (289)
T PRK13645 169 GNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222 (289)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999875558899999999999877 89875
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.3e-31 Score=194.87 Aligned_cols=127 Identities=31% Similarity=0.447 Sum_probs=106.9
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.|+|++|++ .+++ .|+.||+.+.....+....+..+.++.+++.+++. . .++++.+||||||||++||||++.+
T Consensus 85 ~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (280)
T PRK13649 85 KKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAME 163 (280)
T ss_pred hheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 4699999997 4555 69999998765444444444455566777778885 3 5889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~~~~~d~i~ 216 (280)
T PRK13649 164 PKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVY 216 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhCCEEE
Confidence 999999999999999999999999999875 48899999999999987 88874
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=6.4e-31 Score=194.53 Aligned_cols=129 Identities=27% Similarity=0.324 Sum_probs=109.5
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++. +++..|+.+|+.+.....+.......+.++.+++.+++.. .++++.+||+|||||++||||++.+|+
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999985 6777899999987654434444444556667778888754 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.++..+.+.+++++++.|.|||++||+++++..||++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~ 213 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVI 213 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEE
Confidence 999999999999999999999999987555899999999999997799875
No 145
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.5e-31 Score=210.12 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=110.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc--C-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY--N-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||+||++.+++.+|+.||+.++...+ + .+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~ 161 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQ 161 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 46999999999999999999998764322 1 223334456677888888864 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++||||||+|||+.++..+.++|.++++ .|.|||++|||++++.. ||++.
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~ 214 (506)
T PRK13549 162 ARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTIC 214 (506)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEE
Confidence 999999999999999999999999999964 58899999999999987 89875
No 146
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=6.6e-31 Score=209.70 Aligned_cols=128 Identities=22% Similarity=0.321 Sum_probs=108.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC------CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP------GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.+||+||++.+++.+|+.||+.+.... ..+....+..+..+++.+++.. .++++.+||||||||++|||||+
T Consensus 365 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~ 443 (520)
T TIGR03269 365 RYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443 (520)
T ss_pred hhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 4599999999999999999999875432 2233333445667777788853 47899999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|++|||||||+|||+.+++.+.+.|++++++.|.|||++|||++++.. ||++.
T Consensus 444 ~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~ 499 (520)
T TIGR03269 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA 499 (520)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999976568999999999999988 89875
No 147
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.1e-31 Score=194.17 Aligned_cols=128 Identities=23% Similarity=0.322 Sum_probs=106.6
Q ss_pred CcEEEEeccCCC-CCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIAL-FEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||++|++.. ++..|+.+|+.++....+....+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 469999999752 344589999987654444444444455667777778754 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~d~i~ 207 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVY 207 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999875 48899999999999977 89875
No 148
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=6.6e-31 Score=190.23 Aligned_cols=126 Identities=24% Similarity=0.403 Sum_probs=103.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC-CCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLD-LPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|+||++.+|+.+|+.+|+.+....++... .+..+.++..++ +.. .++++.+|||||+||++||||++.+|+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~---~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRS---RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPK 151 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcch---HHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 469999999999999999999987654433221 122334444443 333 578899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|.+++++.|.|+|++||+++++.. ||++.
T Consensus 152 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~ 203 (230)
T TIGR03410 152 LLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYY 203 (230)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999875457899999999999987 88875
No 149
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=7e-31 Score=209.97 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=109.8
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcC--CChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYN--IPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.+||+||++ .+++.+|+.||+.++...+. .+..+.++.+..+++.+++. . .++++.+||||||||++||||++
T Consensus 362 ~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 441 (529)
T PRK15134 362 HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI 441 (529)
T ss_pred hceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh
Confidence 4699999997 48888999999987654332 23333445667778888885 3 68899999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|++|||||||+|||+.+++.+++.|++++++.|.|||++|||++++.. ||++.
T Consensus 442 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~ 497 (529)
T PRK15134 442 LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497 (529)
T ss_pred CCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE
Confidence 99999999999999999999999999999976558899999999999987 99875
No 150
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=209.45 Aligned_cols=128 Identities=24% Similarity=0.351 Sum_probs=109.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc---C-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY---N-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.+||++|++.+++.+|++||+.++...+ + .+..+.++.+..+++.+++.. .++++.+||||||||++||+||+.
T Consensus 79 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 79 AGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred CCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc
Confidence 46999999999999999999998754321 1 223334455677788888865 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~~~~~d~i~ 212 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEIFEICDDVT 212 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999965 48899999999999988 89875
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=191.21 Aligned_cols=127 Identities=28% Similarity=0.346 Sum_probs=105.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|++|++.+++.+|+.||+.+.....+. +.......+..+++.+++. . .++++.+||||||||++||||+
T Consensus 85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14267 85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL 164 (253)
T ss_pred hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence 4699999999999999999999876543322 2333344556666666652 2 4788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEE
Confidence 999999999999999999999999999999863 5899999999999887 99875
No 152
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=1.3e-30 Score=189.63 Aligned_cols=130 Identities=30% Similarity=0.484 Sum_probs=110.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.++|+||++.+|+.+|+.||+.+....++.......+.+..+++.+++.. .++.+.+||+||+||++||||++.+|+
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999998999999987654444333333445566777777754 688899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.+.+++++.++|||++||+++++.. ||++.
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~ 202 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV 202 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 9999999999999999999999999875447899999999999877 89875
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=191.51 Aligned_cols=127 Identities=25% Similarity=0.390 Sum_probs=106.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++.+++.+|+.||+.+.....+. +.....+.++.+++.+++. ..++++.+||||||||++||||++
T Consensus 85 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (258)
T PRK14241 85 RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA 164 (258)
T ss_pred cceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 5699999999999999999999876543332 2333445566667667662 247889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|++++ + +.|||++||+++++.. ||++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999985 3 5899999999999977 89875
No 154
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=182.23 Aligned_cols=130 Identities=28% Similarity=0.415 Sum_probs=115.6
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHH-HHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAF-FSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
-++.+|++||+..++|++||.||+.- +++..++++++.......+++.+.+.. .|+.+-.|||||+|||+|||||+.+
T Consensus 80 lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 80 LRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence 34679999999999999999999764 455667888887778888888888865 8999999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++++||||+.|||.-..++.++|+++.. .|.|-+++||..+.+.. +.+++
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~va~k~as~vv 212 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVV 212 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheE
Confidence 999999999999999999999999999974 69999999999999988 66653
No 155
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=193.68 Aligned_cols=129 Identities=35% Similarity=0.418 Sum_probs=107.4
Q ss_pred CCcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+.|+|++|++. .+...|+.||+.+.....+....+..+.+..+++.+++.. .++++.+|||||+||++||||++.+|
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p 156 (275)
T PRK13639 77 RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKP 156 (275)
T ss_pred HhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 356999999973 3334699999987543333344444456667788888854 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 157 ~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~~~~~d~i~ 208 (275)
T PRK13639 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLVPVYADKVY 208 (275)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999975 48999999999999987 99875
No 156
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=191.45 Aligned_cols=127 Identities=28% Similarity=0.403 Sum_probs=104.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCC----CC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDL----PP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l----~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+++ +|++||+.+.....+. ......+.+..+++.+++ .. .++++.+||||||||++|||||
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 356999999998885 8999999886543332 223344555666666665 22 5788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|++++ + +.|||++||+++++.. ||++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~ 220 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTA 220 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999985 3 6899999999999977 89875
No 157
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=189.83 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=104.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++.+|+ .|+.||+.+.....+. ......+.++.+++.+++.. .++++.+||||||||++||||++
T Consensus 87 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 165 (253)
T PRK14242 87 RRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA 165 (253)
T ss_pred hcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 56999999998888 4999999876544332 22333455666677766631 47789999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|++++ + +.|||++||+++++.. ||++.
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~ 219 (253)
T PRK14242 166 VEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTA 219 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEE
Confidence 9999999999999999999999999999985 3 6899999999999977 89875
No 158
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=192.72 Aligned_cols=129 Identities=24% Similarity=0.324 Sum_probs=107.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh-cC---CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL-YN---IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++.+++.+|+.+|+.+.... .. .......+.++.+++.+++.. .++++.+||||||||++||||++.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 4699999998888889999999864321 11 111223445667777778754 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. ||++.
T Consensus 165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~ 219 (265)
T PRK10575 165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV 219 (265)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999875558899999999999977 89875
No 159
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-30 Score=191.21 Aligned_cols=128 Identities=22% Similarity=0.303 Sum_probs=106.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH----hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK----LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|+||++.+++.+|+.||+.++.. ..+.........+..+++.+++.. .++++.+|||||+||++||||++.
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999988888999999987421 112112223445667777778754 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.|+++.+ .|.|||++||+++++.. ||++.
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~~~~~d~i~ 209 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQASRYCDHLV 209 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHhcCEEE
Confidence 9999999999999999999999999999865 48899999999999987 88874
No 160
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=1.7e-30 Score=192.10 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=108.2
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|+||++. +++.+|+.+++.+..... .....+..+.+..+++.+++. . .++++.+||||||||++||+|++.
T Consensus 87 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 166 (267)
T PRK15112 87 QRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL 166 (267)
T ss_pred ccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh
Confidence 46999999975 677789999988765433 233334445667778888883 3 577889999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. ||++.
T Consensus 167 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~ 221 (267)
T PRK15112 167 RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL 221 (267)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999999876558899999999999988 89875
No 161
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=190.96 Aligned_cols=127 Identities=26% Similarity=0.416 Sum_probs=105.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+++ .|+.+|+.+..... +.+..+..+.++.+++.+++. . .++++.+|||||+||++||||+
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 356999999998887 79999998765433 233344445566677777652 2 4778899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.|++++ + +.|||++||+++++.. ||++.
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999985 3 6899999999999977 89875
No 162
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=1.9e-30 Score=207.42 Aligned_cols=129 Identities=23% Similarity=0.309 Sum_probs=108.6
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHh-cCCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKL-YNIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.+||+||++. +++.+|+.+|+.+.... .+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||
T Consensus 92 ~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL 171 (529)
T PRK15134 92 NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMAL 171 (529)
T ss_pred CceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHH
Confidence 46999999975 66778999998765432 23344445566777888888853 3789999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++.. ||++.
T Consensus 172 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~ 228 (529)
T PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228 (529)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE
Confidence 999999999999999999999999999999876558999999999999987 89875
No 163
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=192.31 Aligned_cols=129 Identities=24% Similarity=0.239 Sum_probs=107.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-C---CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-N---IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|+||++.+++.+|+.||+.+..... . ...+.....+..+++.+++.. .++++.+||||||||++||||++.
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 46999999999998899999997642111 0 111223345667777778854 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.|.++.++.|.|||++||+++++.. ||++.
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~ 215 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLI 215 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999876558899999999999987 89875
No 164
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=2.6e-30 Score=186.37 Aligned_cols=124 Identities=27% Similarity=0.527 Sum_probs=106.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|+||++.+++.+|++||+.++....+... ..+..+++.+++.. .++++.+||+||+||++||||++.+|++
T Consensus 70 ~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred ccEEEEcCCCCccccCCHHHHHHHHHHHcCCCH----HHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 468999999999988999999987654433222 34456667777764 6888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 195 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILSEVQQLADHIG 195 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEE
Confidence 999999999999999999999999864 48899999999999977 89875
No 165
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=189.66 Aligned_cols=126 Identities=23% Similarity=0.399 Sum_probs=102.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHc-CCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVL-DLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++.+|+.+|+.+|+.+..... ......+.++.+.+.+ ++.. .++++.+||||||||++||||++.+|+
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 46999999999999899999998754221 1222233344444444 2432 567889999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.++++++ .|.|||++||+++++.. ||++.
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 208 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQALKLADRGY 208 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHhhCCEEE
Confidence 9999999999999999999999999875 48999999999999877 89874
No 166
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=3.6e-30 Score=186.06 Aligned_cols=129 Identities=33% Similarity=0.463 Sum_probs=104.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC---ChhHHHHHHHH-HHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI---PRSSVEAVIKD-LQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~-~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++.++|+||++.+++.+|+.||+.+....... .........+. .++.+++.. .++.+.+||+||+||++||||++
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence 45699999999999999999999876543221 11111223333 566666654 57889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH-HHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI-EEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~-~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.++++++ .|.|+|++||++ +++.. ||++.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~ 215 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRIL 215 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEE
Confidence 99999999999999999999999999999875 488999999998 57766 89875
No 167
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=4.6e-30 Score=187.02 Aligned_cols=127 Identities=22% Similarity=0.188 Sum_probs=105.1
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcC-------CChhHHHHHHHHHHHHcCCC-C-CCCCCC-CCChHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYN-------IPRSSVEAVIKDLQLVLDLP-P-GNQLCS-TLSGGQARRVSIAV 78 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~-~-~~~~~~-~LS~G~kqrv~ia~ 78 (137)
.++|++|++.+++.+|+.+|+.+...... ....+..+.+..+++.+++. . .++++. +||||||||++|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 48999999999999999999987543211 11223344566777778885 3 567776 59999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
||+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999865 57899999999999987 68875
No 168
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=188.19 Aligned_cols=128 Identities=28% Similarity=0.398 Sum_probs=106.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+++.+|+.||+.+.....+ ....+..+.+..+++.+++. . .++.+.+||||||||++||||+
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 4569999999999998999999987644333 22333344556666666653 1 3678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~ 218 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTA 218 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEE
Confidence 999999999999999999999999999999964 5799999999999977 99875
No 169
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=206.42 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=108.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh----cCC---ChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL----YNI---PRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~----~~~---~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.+||+||++.+++.+|+.||+.+.... .+. +..+..+.+..+++.+++.. .++++.+||||||||++||+|
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 4699999999999999999999764321 121 22334456677788888865 689999999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+.+|+++||||||+|||+.++..+.++|+++++ .|.|||++|||++++.. ||++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~v~ 216 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEIRRICDRYT 216 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999975 48999999999999988 89875
No 170
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6e-30 Score=188.62 Aligned_cols=129 Identities=22% Similarity=0.396 Sum_probs=105.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|++|++.+++ .|+.||+.+.....+. +..+..+.+..+++.+++. ..++++.+|||||+||++||||+
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 356999999998888 7999999876443332 2223334455666666652 24788899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.+++++++.|.|||++||+++++.. ||++.
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~ 222 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA 222 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE
Confidence 999999999999999999999999999999865458899999999999988 89875
No 171
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=2.5e-30 Score=205.53 Aligned_cols=128 Identities=20% Similarity=0.296 Sum_probs=108.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc--C--CChhHHHHHHHHHHHHcCCCC-C-CCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY--N--IPRSSVEAVIKDLQLVLDLPP-G-NQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.+||+||++.+++.+|+.||+.+..... + ....+..+.++.+++.+++.. . ++++.+||||||||++||+||+
T Consensus 78 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 78 AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred CCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 46999999999999999999998754321 1 223334456677788888854 3 5779999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHHhCCEEE
Confidence 99999999999999999999999999999974 58999999999999988 99875
No 172
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=3.2e-30 Score=188.81 Aligned_cols=125 Identities=25% Similarity=0.290 Sum_probs=104.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++..++.+|+.||+.+...... .. ......+++.+++.. .++++.+||||||||++||+||+.+|++
T Consensus 61 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 61 DTVSYKPQYIKADYEGTVRDLLSSITKDFY-TH---PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred ceEEEecccccCCCCCCHHHHHHHHhhhcc-cc---HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 479999999887777899999876432211 11 122345566677754 6789999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||++||+.++..+.+.|++++++.|+|||++|||++++.. ||++.
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~ 187 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLI 187 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999876568999999999999997 99875
No 173
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=189.73 Aligned_cols=126 Identities=25% Similarity=0.417 Sum_probs=104.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.+||++|++.+++. |+.||+.+....++. +..+..+.+..+++.+++.. .++++.+||||||||++|||||
T Consensus 100 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 178 (267)
T PRK14235 100 ARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAI 178 (267)
T ss_pred hceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 469999999988885 999999876543332 22333445666777777732 3678999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~ 233 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTA 233 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEE
Confidence 999999999999999999999999999999863 5899999999999977 88875
No 174
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5e-30 Score=187.87 Aligned_cols=126 Identities=29% Similarity=0.372 Sum_probs=104.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|+||++.+|+ .|+.||+.+.....+.. .......+..+++.+++. ..++++.+||+|||||++||||++
T Consensus 86 ~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 86 KEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 46999999998887 79999998765443332 222344555666666652 247889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~ 218 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTG 218 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999853 5899999999999877 89875
No 175
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=187.77 Aligned_cols=126 Identities=29% Similarity=0.444 Sum_probs=104.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|+||++.+|+ .|++||+.++...++. ......+.+..+++.+++. . .++++.+|||||+||++||||+
T Consensus 79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 79 KNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred hhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 46999999999887 6999999876544332 1223344556677777773 2 4678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++. . +.|+|++||+++++.. ||++.
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~ 212 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTA 212 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEE
Confidence 99999999999999999999999999999985 3 7899999999999987 89875
No 176
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=2.1e-30 Score=227.76 Aligned_cols=130 Identities=28% Similarity=0.513 Sum_probs=116.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.|||+||++.+++.+|++||+.+.+..++.+.++.++.++.+++.+++.. .++++++||||||||+++|+||+.+|+
T Consensus 2011 r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257 2011 HQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred hhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3569999999999999999999998777766665555667778888888854 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++||||||+|||+.+++.+++.|++++++ |+|||++||++++++. ||++.+
T Consensus 2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257 2091 LVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAI 2142 (2272)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999998754 8999999999999998 999853
No 177
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.1e-30 Score=187.36 Aligned_cols=126 Identities=25% Similarity=0.358 Sum_probs=104.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|+||++.+++ .|+.||+.+.....+.. .....+.++.+++.+++. ..++++.+||||||||++||||++
T Consensus 84 ~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 84 KNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred hheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 46999999998887 59999998765443322 223344566677777663 146788999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++. + +.|||++||+++++.. ||++.
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEE
Confidence 9999999999999999999999999999985 3 6899999999999977 89875
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.9e-30 Score=205.26 Aligned_cols=128 Identities=23% Similarity=0.268 Sum_probs=109.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh--cC-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL--YN-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||++|++.+++.+|+.+|+.+.... .+ ....+..+.+..+++.+++.. .++++.+||||||||++|||||+.+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 5699999999999999999999875321 12 223344556677888888864 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++||||||+|||+.+++.+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~~~~~d~i~ 211 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEIFALCDAIT 211 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999865 58999999999999988 89875
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=4.4e-30 Score=185.64 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=106.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.++|++|++.+++. |+.||+.+....++... ....++.+++.+++. . .++++.+||+||+||++||||++.+|+
T Consensus 81 ~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (225)
T PRK10247 81 QQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQP--DPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157 (225)
T ss_pred hccEEEecccccccc-cHHHHHHhHHhhcCCCh--HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 468999999988875 99999987544332211 233455677777884 3 588999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||||+|||+.+++.+.+.+.++.++.|.|||++||+++++..||++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~ 208 (225)
T PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI 208 (225)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEE
Confidence 999999999999999999999999987655889999999999997799875
No 180
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=4.6e-30 Score=185.34 Aligned_cols=128 Identities=25% Similarity=0.329 Sum_probs=104.2
Q ss_pred CcEEEEeccCCCCC--CCCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFE--EFTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~--~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|++|++.+++ .+|+.+|+.+..... ..........+..+++.+++.. .++++.+||+|||||++||||+
T Consensus 49 ~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 128 (223)
T TIGR03771 49 RHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL 128 (223)
T ss_pred CcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 56999999987643 479999997643211 1111223345667777778754 6888999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.++++++ .|.|+|++||+++++.. ||++.
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvii~sH~~~~~~~~~d~i~ 184 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAG-AGTAILMTTHDLAQAMATCDRVV 184 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999875 48999999999999987 89875
No 181
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.2e-30 Score=183.99 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=106.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+....++.. ..+..+.++..+++.. .++++.+||+|||||++||||++.+|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcCCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 35899999998998899999998765443321 2334556677777754 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++.+ .|.|+|++||+++++.. ||++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~~~i~ 208 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAAPPVRTRML 208 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhhhhhcceEE
Confidence 999999999999999999999999865 47899999999999988 88864
No 182
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.5e-30 Score=183.06 Aligned_cols=122 Identities=22% Similarity=0.268 Sum_probs=104.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+....++. ...+.++.+++.+++.. .++++.+||||||||++||+|++.+|++
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 150 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999876544321 22345667777788854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+||||||+|||+.+++.+.++|+++++ .|.|||++||+++++..|+
T Consensus 151 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 151 WILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPVASDK 196 (204)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhhccCC
Confidence 999999999999999999999999864 4789999999999998853
No 183
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=4.9e-30 Score=188.50 Aligned_cols=128 Identities=23% Similarity=0.264 Sum_probs=106.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-h---cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-L---YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++.+++.+|+.||+.++.. . ......+..+.+..+++.+++.. .++++.+|||||+||++||+|++.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999988888999999987421 1 11112223345666777777754 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~ 208 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLAASYCDHVV 208 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999874 47899999999999977 99875
No 184
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=3.2e-30 Score=205.44 Aligned_cols=124 Identities=24% Similarity=0.320 Sum_probs=107.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||++|++.+++.+|+.||+.+.... ....++.+..+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l 161 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI 161 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 3599999999999999999999875321 1233455667788888864 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~~~~~d~i~ 211 (510)
T PRK15439 162 LILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEIRQLADRIS 211 (510)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999975 48999999999999987 99875
No 185
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=2.9e-30 Score=196.30 Aligned_cols=130 Identities=28% Similarity=0.386 Sum_probs=115.2
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+|+++||+| ++.|-.|+...+.-..+++ +.+....++.+-.+++.+|+++ .+.++++|||||||||.||+||
T Consensus 93 ~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMAL 172 (534)
T COG4172 93 NKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMAL 172 (534)
T ss_pred cceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHH
Confidence 4799999998 4777678877776665554 4567777888888888999864 2789999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|++||.||||+.||+.-+.+|+++|+++.++.|++++++|||+..+.+ +|++++
T Consensus 173 an~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V 230 (534)
T COG4172 173 ANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV 230 (534)
T ss_pred cCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence 999999999999999999999999999999998889999999999999999 999875
No 186
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-30 Score=187.83 Aligned_cols=125 Identities=30% Similarity=0.443 Sum_probs=104.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
++.++|+||++.+++ .|+.||+.+.....+ . ....+..+++.+++. . .++++.+||||||||++||||++.+|
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 76 RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG--E--KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred hhcEEEEecCchhch-hhHHHHHhcchhhcC--c--HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 356999999998887 599999876433221 1 123455667777885 3 57889999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.+++.+.+.|++++++.|.|||++||+++++.. ||++.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~ 203 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA 203 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE
Confidence 99999999999999999999999999876458899999999999987 89875
No 187
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.8e-30 Score=189.51 Aligned_cols=125 Identities=27% Similarity=0.409 Sum_probs=102.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|+||++.+|+. |+.||+.+.....+... ...+.+..+++.+++. . .++++.+||+|||||++|||||+.
T Consensus 94 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 94 RRIGMVFQQPNPFPK-SIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred hceEEEccCCccchh-hHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 469999999988885 99999987654333222 2233444555555442 2 478889999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.++|++++ + +.|||++||+++++.. ||++.
T Consensus 172 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~ 224 (269)
T PRK14259 172 EPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTA 224 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999999985 3 6899999999999988 99875
No 188
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.5e-30 Score=186.84 Aligned_cols=127 Identities=25% Similarity=0.393 Sum_probs=104.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+++ .|+.+|+.+.....+. +....++.+..+++.+++. ..++++.+|||||+||++||||+
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346999999998887 8999999876544332 2233344555556655542 24778999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++. + +.|||++||+++.+.. ||++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~ 216 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTA 216 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEE
Confidence 99999999999999999999999999999985 3 6899999999999988 89875
No 189
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.2e-30 Score=186.80 Aligned_cols=127 Identities=27% Similarity=0.404 Sum_probs=105.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.+||+||++.+++ .|+.||+.+.....+. ...+....+..+++.+++. . .++++.+||+|||||++||||+
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 356999999999887 8999999876544333 2233344455666666652 2 4778999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~ 217 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTA 217 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEE
Confidence 999999999999999999999999999999864 4799999999999887 89875
No 190
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-30 Score=203.53 Aligned_cols=128 Identities=20% Similarity=0.223 Sum_probs=108.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-hcC--CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-LYN--IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||+||++.+++.+|+.||+.+... ..+ .+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~ 152 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYN 152 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhC
Confidence 469999999999999999999987532 112 123333455667777788864 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~~~~~d~i~ 205 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEIFQLCDEIT 205 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999864 58899999999999987 89875
No 191
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=4.8e-30 Score=225.57 Aligned_cols=128 Identities=32% Similarity=0.534 Sum_probs=114.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+++.+||+||+.++.+.++.+.++.++.++.+++.+++.. .++++++||||||||++||+||+.+|+
T Consensus 1002 r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~Pk 1081 (2272)
T TIGR01257 1002 RQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAK 1081 (2272)
T ss_pred hhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3569999999999999999999998877666555555667778888888865 689999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.++++|++++ + |+|||++||+++++.. ||++.
T Consensus 1082 VLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257 1082 VVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999984 3 8899999999999988 99885
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-29 Score=186.28 Aligned_cols=127 Identities=24% Similarity=0.409 Sum_probs=104.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~a 79 (137)
++.++|+||++.+++. |+.+|+.+.....+. ........+..+++.+++.. .++.+.+||||||||++||||
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 3569999999988886 999999876433332 12233445566677777632 367889999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++.+|+++||||||+|||+.+++.+.+.|+++. + +.|||++||+++++.. ||++.
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~ 219 (251)
T PRK14244 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVA 219 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEE
Confidence 999999999999999999999999999999985 3 7899999999999987 89875
No 193
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.97 E-value=1.2e-29 Score=186.58 Aligned_cols=129 Identities=23% Similarity=0.290 Sum_probs=105.9
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++. +++.+|+.+|+.+....... ...+....+..+++.+++. . .++++.+|||||+||++||||++.
T Consensus 89 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~ 168 (258)
T PRK11701 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred cceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhc
Confidence 35999999974 67778999998765432221 2223344566777778874 2 578999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.++++.++.|.|||++||+++++.. ||++.
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~ 223 (258)
T PRK11701 169 HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL 223 (258)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999999876558899999999999987 89875
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=186.98 Aligned_cols=126 Identities=26% Similarity=0.419 Sum_probs=104.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.+||+||++.+++. |+.||+.+.....+. ...+..+.++.+++.+++. ..++++.+||||||||++||||++
T Consensus 93 ~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 93 KNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 469999999988885 999999876544332 2233344455666666652 147789999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++. + +.|+|++||+++++.. ||++.
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~ 225 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTA 225 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEE
Confidence 9999999999999999999999999999986 3 6899999999999987 89875
No 195
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=186.87 Aligned_cols=126 Identities=26% Similarity=0.421 Sum_probs=103.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++.+|+ .|+.||+.+.....+ .+..+..+.+..+++.+++. ..++++.+||+||+||++||||++
T Consensus 88 ~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 88 RQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 46999999999887 799999987644332 22233344555666666552 257889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTA 220 (259)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEE
Confidence 99999999999999999999999999999863 5899999999999988 89875
No 196
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=7.6e-30 Score=186.87 Aligned_cols=127 Identities=17% Similarity=0.280 Sum_probs=106.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc----
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH---- 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~---- 82 (137)
+.++|+||++.+++.+|+.+|+.++... .....+..+.++.+++.+++.. .++++.+||+|||||++||+|++.
T Consensus 69 ~~i~~v~q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 69 RHRAYLSQQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred hheEEecccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 4589999998888889999999875321 2223333455667777778854 688999999999999999999998
Q ss_pred ---CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 ---SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ---~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEE
Confidence 6799999999999999999999999999875 48899999999999877 89875
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-30 Score=203.92 Aligned_cols=128 Identities=24% Similarity=0.399 Sum_probs=106.6
Q ss_pred CcEEEEecc---CCCCCCCCHHHHHHHHHHhc--------CC-ChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHH
Q psy17960 8 SMLGFMPQE---IALFEEFTISETFAFFSKLY--------NI-PRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARR 73 (137)
Q Consensus 8 ~~i~~~~q~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqr 73 (137)
+.+||+||+ +.+++.+|+.||+.+....+ +. .....+..++.+++.+++. . .++++.+||||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred CCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHH
Confidence 469999998 46888999999998643210 11 1222334566777888885 4 689999999999999
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||+.+|++|||||||+|||+.+++.+.++|+++++ .|.|||++|||++++.. ||++.
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~~~~~d~i~ 480 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEIITVCDRIA 480 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEE
Confidence 9999999999999999999999999999999999999975 48999999999999988 99875
No 198
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=189.23 Aligned_cols=125 Identities=25% Similarity=0.389 Sum_probs=104.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++.++|++|++.+|+. |+.||+.+.....+... ...+.++.+++.+++. ..++++.+||||||||++|||||+
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~ 196 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA 196 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 3569999999988885 99999987654433332 2344566667676663 247889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++||+++++.. ||++
T Consensus 197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri 249 (285)
T PRK14254 197 PDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKT 249 (285)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEE
Confidence 99999999999999999999999999999964 3799999999999988 8985
No 199
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=185.22 Aligned_cols=127 Identities=28% Similarity=0.359 Sum_probs=103.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCC----C-CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDL----P-PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l----~-~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++.+++.+|+.||+.+.....+. ..++..+.+..++..+++ . ..++++.+|||||+||++||||++
T Consensus 85 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14272 85 RRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA 164 (252)
T ss_pred ceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 4699999999999989999999875443322 222233444444444433 1 247889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|++++ + +.|+|++||+++++.. ||++.
T Consensus 165 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 165 VEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999985 3 6899999999999987 89875
No 200
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-29 Score=185.37 Aligned_cols=127 Identities=27% Similarity=0.388 Sum_probs=103.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+++. |+.||+.+.....+.. .+...+.++.++..+++. ..++++.+||||||||++||||+
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 4569999999998885 9999998765433322 222334455555555542 24788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.++|+++. + +.|||++||+++++.. ||++.
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~ 217 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTG 217 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEE
Confidence 99999999999999999999999999999984 3 7899999999999988 78875
No 201
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=187.58 Aligned_cols=127 Identities=26% Similarity=0.372 Sum_probs=102.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|++|++.+|+. |+.||+.+.....+.. ....+..+..++..+++. . .++++.+||||||||++|||||
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 3569999999988885 9999998764433221 122234445555555552 2 4688999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~ 234 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTA 234 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEE
Confidence 999999999999999999999999999999853 5799999999999877 89875
No 202
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=7.9e-30 Score=181.48 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=102.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+..... ..+.++.+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 46999999999988899999998753211 2344566777777754 6888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++++ .|.|+|++||+...... |++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGLSEAGAREL 196 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchhhhhccceeE
Confidence 999999999999999999999999864 48899999998877766 77654
No 203
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=2.1e-29 Score=184.98 Aligned_cols=127 Identities=19% Similarity=0.199 Sum_probs=104.2
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++. +.+..|+.+|+.+.....+... ..+.+..+++.+++.. .++.+.+|||||+||++||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~ 156 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL 156 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence 46999999974 4455789898876543333322 2245566777777753 47889999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|++|||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 157 CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999999876558999999999999977 88874
No 204
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.6e-30 Score=202.78 Aligned_cols=128 Identities=21% Similarity=0.330 Sum_probs=107.2
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHH--hcC---CChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSK--LYN---IPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia 77 (137)
+.+||++|++ .+++.+|+.||+.+... ... .......+.++.+++.+++. . .++++.+||||||||++||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 4589999986 47888999999986531 211 12233345567788888884 3 6899999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||++.+|++|||||||+|||+.+++.+.+++.++++ .|.|||++|||++++.. ||++.
T Consensus 418 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~~~~~d~v~ 476 (506)
T PRK13549 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVL 476 (506)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999975 48999999999999988 99875
No 205
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=185.00 Aligned_cols=127 Identities=25% Similarity=0.412 Sum_probs=104.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+|+ .|+.||+.+.....+.. .+..++.+..+++.+++. . .++++.+|||||+||++||||+
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 356999999998886 69999998764433332 222334555666666662 2 4778899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.++++.+ +.|||++||+++++.. ||++.
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEE
Confidence 999999999999999999999999999999853 5899999999999887 88875
No 206
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-29 Score=188.57 Aligned_cols=127 Identities=28% Similarity=0.405 Sum_probs=103.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+++. |+.||+.+.....+.. ....++.+..+++.+++. ..++++.+||||||||++|||||
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 3569999999988875 9999998865433332 222344455566665552 24788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999863 5899999999999987 89875
No 207
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=201.87 Aligned_cols=128 Identities=21% Similarity=0.398 Sum_probs=107.1
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHH--hc---C-CChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSK--LY---N-IPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~i 76 (137)
+.+||++|++ .+++.+|+.+|+.+... .. + ....+.++.++.+++.+++. . .++++.+||||||||++|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 4599999996 57888999999986431 11 1 12223345567788888884 3 789999999999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+|++.+|++|||||||+|||+.+++.+.+.|+++.+ .|.|||++|||++++.. ||++.
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~~~~~d~v~ 466 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEVLGMSDRIL 466 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHhhCCEEE
Confidence 9999999999999999999999999999999999975 48999999999999988 89875
No 208
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=184.23 Aligned_cols=127 Identities=30% Similarity=0.424 Sum_probs=103.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+|+ .|+.||+.+.....+.. .....+.+..+.+.+++. ..++++.+|||||+||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 356999999999887 79999998764433322 223334455555555542 24678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999864 4899999999999988 89874
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-29 Score=183.89 Aligned_cols=127 Identities=31% Similarity=0.453 Sum_probs=104.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|+||++.+++ .|++||+.+.....+.. ....++.++.+++.+++.. .++++.+|||||+||++||||+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 356999999998887 79999998765443322 2233444556666666531 4778999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|.++.+ +.|+|++||+++.+.. ||++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~ 216 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIA 216 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999863 6899999999999877 89875
No 210
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=2.2e-29 Score=182.01 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=100.3
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCC
Q psy17960 17 IALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95 (137)
Q Consensus 17 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~g 95 (137)
..+++.+|+.||+.+....++.......+....+++.+++.. .++++.+||||||||++||||++.+|+++||||||+|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 456678899999987655444443444455667777778754 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 96 VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 96 LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||+.+++.+.+.+++++++ |.|||++||+++++.. ||++.
T Consensus 173 LD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~ 213 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRAL 213 (224)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999998754 7899999999999987 88875
No 211
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-29 Score=183.46 Aligned_cols=126 Identities=29% Similarity=0.435 Sum_probs=101.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCC----CC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDL----PP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l----~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+.++|++|++.+++ .|+.+|+.+.....+.. .+...+.+...++.+++ .. .++++.+||+|||||++||||++
T Consensus 86 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 86 KQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred CeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 46999999998888 69999998765443322 22223334444444443 12 46788999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|+++.+ +.|+|++||+++++.. ||++.
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 165 VKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999864 4799999999999987 89875
No 212
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=1.1e-29 Score=201.75 Aligned_cols=128 Identities=22% Similarity=0.333 Sum_probs=107.2
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHH--hc---CCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSK--LY---NIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia 77 (137)
+.+||++|++ .+++.+|+.+|+.+... .. .......+..++.+++.+++. . .++++.+||||||||++||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 4689999996 58888999999976431 11 112233345567788888885 3 5889999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||++.+|++|||||||+|||+.+++.+.+++.++++ .|.|||++|||++++.. ||++.
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~v~ 474 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVL 474 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999975 48899999999999988 89875
No 213
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=3.8e-29 Score=185.05 Aligned_cols=130 Identities=21% Similarity=0.241 Sum_probs=107.7
Q ss_pred CCcEEEEeccC--CCCCCCCHHHHHHHHHHh-cCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEI--ALFEEFTISETFAFFSKL-YNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
++.++|++|++ .+++..|+.+|+.+.... ...........++.++..+++. . .++++.+||+||+||++|||||+
T Consensus 88 ~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~ 167 (268)
T PRK10419 88 RRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA 167 (268)
T ss_pred HhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh
Confidence 35699999997 466778999998765432 2233333344567777777884 3 68899999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||+++++.. ||++.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~ 223 (268)
T PRK10419 168 VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM 223 (268)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999876558899999999999987 89875
No 214
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=7.7e-30 Score=181.79 Aligned_cols=130 Identities=22% Similarity=0.381 Sum_probs=108.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC-CCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLD-LPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+..|+||||...+|+.+||+||+.++...... +......++.+.+.|. +.+ .+++.++|||||||.++|||||+.+|
T Consensus 77 r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred hCCeEeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 34699999999999999999999987543221 1111222555666554 344 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++|+|||||.||-|.-.+++++.+++++++.|.||+++.++...+.. +|+.++
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE
Confidence 99999999999999999999999999987768999999999999988 898764
No 215
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=201.83 Aligned_cols=128 Identities=20% Similarity=0.292 Sum_probs=106.5
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHHhc----C--CChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSKLY----N--IPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~i 76 (137)
+.++|+||++ .+++.+|+.||+.+..... + ......++.++.+++.+++. . .++++.+||||||||++|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 4689999986 4888899999987643211 1 11222334566778888883 3 689999999999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+|++.+|++|||||||+|||+.+++.+.++|.++++ .|.|||++|||++++.. ||+++
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~~~~~d~i~ 467 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEVLGVADRIV 467 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHhhCCEEE
Confidence 9999999999999999999999999999999999975 48899999999999988 89875
No 216
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.9e-29 Score=180.22 Aligned_cols=122 Identities=23% Similarity=0.296 Sum_probs=102.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.+|+.+....++.. .+.+..+++.+++.. .++++.+||||||||++||+|++.+|++
T Consensus 73 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred hhcEEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 46899999888888899999998765433221 123556677777754 5788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
+||||||+|||+.+++.+.+.|+++++ +|.|||++||+++++.. |++
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~-~~~ 195 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPLGLPG-ARE 195 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhhcc-CcE
Confidence 999999999999999999999999865 48999999999999887 654
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=185.40 Aligned_cols=127 Identities=28% Similarity=0.385 Sum_probs=104.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+|+. |+.||+.+.....+.. ....++.+..+.+.+++. ..++++.+|||||+||++||||+
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 4579999999998886 9999998765443322 222334556666666653 24678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.++++++ +.|+|++||+++++.. ||++.
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~ 238 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTA 238 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEE
Confidence 999999999999999999999999999999864 5899999999999987 89875
No 218
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-29 Score=184.48 Aligned_cols=127 Identities=27% Similarity=0.385 Sum_probs=104.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+|+ .|+.||+.++....+. ........+..+++.+++. ..++++.+|||||+||++||||+
T Consensus 100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 456999999998887 5999999876443332 2233344555666666652 24788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.++|+++. + +.|||++||+++++.. ||+++
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~ 233 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTA 233 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEE
Confidence 99999999999999999999999999999985 3 6899999999999877 99875
No 219
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=2e-29 Score=186.93 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=105.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh-
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL- 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~- 81 (137)
+.++|+||++.+++.+|+.||+.+..... +....+..+.+..+++.+++.. .++++.+|||||+||++|||||+
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 35899999987666689999998753211 1111223345666777778754 68899999999999999999999
Q ss_pred --------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 --------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 --------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.+++.+.+.++++.++.|.|||++||+++++.. ||++.
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~ 226 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA 226 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 59999999999999999999999999999876558999999999999987 89875
No 220
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=4.9e-29 Score=182.78 Aligned_cols=129 Identities=23% Similarity=0.282 Sum_probs=104.1
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCC--CCCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLP--PGNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~--~~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|++|++. +++.+|+.+|+.+...... .........+..+++.+++. ..++.+.+||||||||++|||||+.
T Consensus 86 ~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 86 TEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred cceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhc
Confidence 45899999974 4556788999875432111 11222344566777788874 3588999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|+++||||||+|||+.+++.+.+.++++.++.|.|+|++||+++++.. ||++.
T Consensus 166 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~ 220 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL 220 (253)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 9999999999999999999999999999865558899999999999987 88864
No 221
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.2e-29 Score=183.37 Aligned_cols=128 Identities=26% Similarity=0.377 Sum_probs=106.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+++.+|+.+|+.+.....+. ...+..+.+..+.+.+++. ..++.+..||+|||||++||||+
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 35699999999999989999999876543322 2334445566677777763 24778899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.+.++++ +.|||++||+++++.. ||++.
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~ 223 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVA 223 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999999999853 5899999999999976 88874
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-29 Score=185.45 Aligned_cols=126 Identities=26% Similarity=0.402 Sum_probs=101.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC----C-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP----P-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.++|+||++.+|+. |+.+|+.+.....+... ..++.+..+.+.+++. . .++++.+|||||+||++|||||+.
T Consensus 101 ~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 101 RQVGMVFQRPNPFPK-SIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred hcEEEEccCCccccc-cHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 569999999988875 99999987643322211 1223344455555542 2 467889999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++.+
T Consensus 179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~ 232 (274)
T PRK14265 179 KPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAF 232 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999863 5899999999999987 898753
No 223
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=2.7e-29 Score=202.74 Aligned_cols=123 Identities=23% Similarity=0.245 Sum_probs=105.7
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
.+||++|++.+++.+||.||+.+..... .. ....+.+++.+++.. .++++.+||||||||++||+||+.+|++|
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 5899999998888899999998753221 11 123456777778754 68999999999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||||||+|||+.++..+.+.|++++++.|.|||++|||++++.. ||++.
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvi 525 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLM 525 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999976568899999999999988 99875
No 224
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.2e-29 Score=184.65 Aligned_cols=127 Identities=27% Similarity=0.375 Sum_probs=103.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|++|++.+|+ .|+++|+.+...... .+..+.......+++.+++.. .++.+.+|||||+||++||||+
T Consensus 100 ~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 100 RRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred hhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 356999999999888 799999987643322 233333444555666666642 3678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~ 233 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAA 233 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999864 4799999999999887 89875
No 225
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.4e-29 Score=182.26 Aligned_cols=127 Identities=26% Similarity=0.405 Sum_probs=103.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|++|++.+|+. |++||+.+.....+. .....+..+..+++.+++. ..++.+.+||+|||||++||||+
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 3569999999998885 999999876554332 2223334455555555542 24788999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++||+++++.. ||++.
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEE
Confidence 999999999999999999999999999999864 5899999999999977 89874
No 226
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.2e-29 Score=184.44 Aligned_cols=126 Identities=26% Similarity=0.412 Sum_probs=101.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
.+.++|++|++.+++. |+.||+.+.....+.. ....+.+..+++..++. ..++++.+|||||+||++||||++
T Consensus 90 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 90 RRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred hhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 3569999999988884 9999998765432222 12223344444444441 246788999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++||+++++.. ||++.
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~ 221 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTA 221 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999999864 4799999999999988 89875
No 227
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=4.8e-29 Score=177.26 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=103.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
++++|++|++.+++.+|+.+|+.+..... .. ...+..+++.+++.. .++++.+||+||+||++||||++.+|++
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 56999999998888899999998754221 11 234556666667754 5788899999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
+||||||+|||+.+++.+.+.|+++++ .|.|+|++||+...+..||.-
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhccccchh
Confidence 999999999999999999999999864 488999999999999888753
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=184.47 Aligned_cols=127 Identities=27% Similarity=0.414 Sum_probs=101.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHcC----CCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLD----LPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~----l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|+||++.+|+. |+.||+.+.....+.. ....+..+..++..++ +.. .++++.+||||||||++|||||
T Consensus 104 ~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 104 RTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 3569999999988874 9999998765433322 2222333444444432 222 4778999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++.
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEE
Confidence 999999999999999999999999999999863 6899999999999887 89875
No 229
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=2.9e-29 Score=190.87 Aligned_cols=129 Identities=21% Similarity=0.307 Sum_probs=113.9
Q ss_pred CcEEEEeccC--CCCCCCCHHHHHHHHHHhcC--CChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYN--IPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
+++-.|||+| ++.|.+||.+.+.-++..+. .+..+..+.+..++..+|++. .+++++++|||||||++||||++
T Consensus 363 ~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli 442 (534)
T COG4172 363 RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI 442 (534)
T ss_pred hhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh
Confidence 4567899998 68999999999988877664 455555666677777888853 69999999999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|++++||||||.||..-+.++.++++++.++.|.+.+|+|||+..+.. ||++.
T Consensus 443 LkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~vi 498 (534)
T COG4172 443 LKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498 (534)
T ss_pred cCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEE
Confidence 99999999999999999999999999999998889999999999999998 88865
No 230
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.7e-29 Score=182.84 Aligned_cols=126 Identities=26% Similarity=0.359 Sum_probs=103.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-----CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
.+.++|+||++.+| .+|+.||+.+.....+.. .+....+..+++.+++.. .++++.+||+||+||++||||++
T Consensus 88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 35699999999887 489999998765433322 223345556666666631 25678899999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+|+++||||||+|||+.++..+.+.+++++ + +.|+|++||+++++.. ||++.
T Consensus 166 ~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999985 3 6899999999999987 89875
No 231
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.2e-29 Score=187.96 Aligned_cols=128 Identities=27% Similarity=0.412 Sum_probs=103.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhH-HHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSS-VEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|+||++.+|+ .|++||+.|.....+....+ ..+....+++..++. ..++++.+||||||||++||||+
T Consensus 162 r~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl 240 (329)
T PRK14257 162 RTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAI 240 (329)
T ss_pred hccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 457999999999886 69999998765433332222 223345555555542 24688999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.+|+++||||||+|||+.+...+.+.|+++.+ ++|+|++||+++++.. ||++.+
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999864 5899999999999998 999864
No 232
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=5.6e-29 Score=198.32 Aligned_cols=128 Identities=25% Similarity=0.409 Sum_probs=105.5
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHH--h-cCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSK--L-YNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|+||++ .+++.+|+.+|+..... . ........++.++.+++.+++. . .++++.+||||||||++||+|
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHH
Confidence 4689999985 48888999999864211 1 1111222344566778888885 4 689999999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++.+|++|||||||+|||+.+++.+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i~~~~d~i~ 474 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEIEQMADRVL 474 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999975 48999999999999988 99875
No 233
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=180.22 Aligned_cols=127 Identities=25% Similarity=0.379 Sum_probs=104.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+.++|+||++.+|+. |+.+|+.+.....+. .....++.+..+++.+++. ..++++.+||+|||||++||||+
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3569999999998885 999999876443322 2233445566666666652 14778999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|++++ + +.|||++||+++++.. ||++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEE
Confidence 99999999999999999999999999999985 3 6899999999999988 77653
No 234
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=5.3e-29 Score=201.12 Aligned_cols=126 Identities=23% Similarity=0.301 Sum_probs=99.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HH-cCCCC-C----CCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LV-LDLPP-G----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~~-~----~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+|++|++.+|+. |++||+.++. ...+.++..+.++.+. +. ..++. . .+...+||||||||++|||
T Consensus 422 r~~i~~v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialAR 498 (588)
T PRK11174 422 RKHLSWVGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498 (588)
T ss_pred HhheEEecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHH
Confidence 4579999999999987 9999998852 1234445444444321 11 11222 1 2345679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+++|||||||+||+.+.+.+.+.+.++. .++|+|++||+++.+..||+|.+
T Consensus 499 All~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i~~aD~Iiv 555 (588)
T PRK11174 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDLAQWDQIWV 555 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHHHhCCEEEE
Confidence 9999999999999999999999999999998875 37899999999999999999853
No 235
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=1.3e-28 Score=174.81 Aligned_cols=117 Identities=21% Similarity=0.263 Sum_probs=98.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.+|+.++....+. + ++.+..+++.+++.. .++++.+||||||||++||||++.+|++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHGG---A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcCC---c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 5689999998888889999999876544321 1 234556677777754 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
++|||||+|||+.+++.+.+.+.++++ .|.|+|++||+...+
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~ 190 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL 190 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc
Confidence 999999999999999999999999864 478999999998544
No 236
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=2.8e-29 Score=182.46 Aligned_cols=124 Identities=28% Similarity=0.418 Sum_probs=96.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHH-----HHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI-----KDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|+||++.+++ .|+.||+.+... ........... ..+...+ ++.. .++++.+||||||||++||||
T Consensus 76 ~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 76 RQVGVVLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred hcEEEEcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 46999999998775 699999976421 11222221111 2222222 3332 467889999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||+|||+.+++.+.+.|+++. + |.|||++||+++++..||++.
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~ 207 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRII 207 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEE
Confidence 999999999999999999999999999999985 3 789999999999997798875
No 237
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-28 Score=180.22 Aligned_cols=127 Identities=29% Similarity=0.417 Sum_probs=102.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHcCCC-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPR-SSVEAVIKDLQLVLDLP-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++.++|++|++.+|+. |+.||+.+.....+... ...++.+..+++..++. ..++.+.+||+||+||++||||+
T Consensus 98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 3469999999998886 99999987654333322 22234445555555442 24678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++.
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~ 231 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTA 231 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999863 5899999999999987 89875
No 238
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.3e-28 Score=174.38 Aligned_cols=123 Identities=19% Similarity=0.303 Sum_probs=102.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+++.+|+.||+.+....+. ..+.+..+++.+++.. .++++.+||+|||||++||||++.+|++
T Consensus 70 ~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 70 PYCTYIGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred hhEEeccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 358999999888888999999987654322 1234455666667754 6888999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.+++.+.+.+++.. +.|.|+|++||+++++..+|.+.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999998765 35889999999999999888654
No 239
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=1.3e-28 Score=180.80 Aligned_cols=122 Identities=23% Similarity=0.324 Sum_probs=99.9
Q ss_pred CcEEEEeccCCCCCCC--CHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEF--TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
..++|+||++.+++.+ |+.+++.+. .+.. .+.+..+++.+++.. .++++.+|||||+||++||+|++.+|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~---~~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR---PGTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc---cccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4699999998877653 677765431 1111 233455666777754 67899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.++..+.+.|+++.++.|.|||++||+++++.. ||++.
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~ 192 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999875448899999999999977 89875
No 240
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=1.9e-28 Score=199.98 Aligned_cols=128 Identities=32% Similarity=0.443 Sum_probs=107.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc---CCChhHHHHHHHHHHHHcCCCC-C-----CCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY---NIPRSSVEAVIKDLQLVLDLPP-G-----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~-~-----~~~~~~LS~G~kqrv~ia~ 78 (137)
+++||++|++.+++.+||+||+.+..... ..+.++..+.++.+++.+++.. . ++.+++||||||||++||+
T Consensus 140 ~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 56999999999999999999999865432 1223344456777888888853 3 4567889999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH-HHHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE-EARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~-~~~~-~d~~~ 136 (137)
+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.. +|++.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~ii 278 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVL 278 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEE
Confidence 99999999999999999999999999999999975 5899999999998 4655 88875
No 241
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=9.7e-29 Score=179.21 Aligned_cols=124 Identities=30% Similarity=0.422 Sum_probs=98.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHH-----HHHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAV-----IKDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|++|++.+++ .|++||+.++... ......... +..+.+.+ ++.. .++++.+||+|||||++||||
T Consensus 76 ~~i~~~~q~~~~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 76 RQIGLVSQDVFLFN-DTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred hhEEEeCCCCeecc-ccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHH
Confidence 56999999998887 5999999765321 122222211 22333333 3432 467889999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||+|||+.+++.+.+.|+++. + +.|||++||+++++..||++.
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~ 207 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIV 207 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEE
Confidence 999999999999999999999999999999985 3 789999999999998899875
No 242
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=5.6e-28 Score=177.01 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=102.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhc----CC---ChhHHHHHHHHHHHHcCCC-C-CCCCCC-CCChHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLY----NI---PRSSVEAVIKDLQLVLDLP-P-GNQLCS-TLSGGQARRVSIAV 78 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~----~~---~~~~~~~~~~~~~~~~~l~-~-~~~~~~-~LS~G~kqrv~ia~ 78 (137)
.++|++|++.+++.+|+.+|+.+..... .. ...+....+..+++.+++. . .++++. +|||||+||++||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 3789999999999999999987653211 11 1112234455667777875 2 567776 59999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
|++.+|+++||||||+|||+.+++.+.+.|+++.+ .|.|||++||+++++.. ||++.
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~ 223 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVH 223 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEE
Confidence 99999999999999999999999999999999874 58899999999999976 68764
No 243
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=7.6e-28 Score=177.85 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=105.3
Q ss_pred EEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEE
Q psy17960 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ill 88 (137)
+++++|.+.+++.+|+.+|+.+.....+...++....+..++..+++.. .++++.+||+||+||++||+|++.+|+++|
T Consensus 87 ~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLl 166 (264)
T PRK13546 87 VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILV 166 (264)
T ss_pred EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 5677888778888999999987544434444444455566666667754 678999999999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 89 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||||+|||+.++..+.+.+.++++ .|.|||++||+++++.. ||++.
T Consensus 167 LDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~ 214 (264)
T PRK13546 167 IDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIA 214 (264)
T ss_pred EeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEE
Confidence 9999999999999999999999864 58899999999999987 88874
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.96 E-value=6.1e-29 Score=179.52 Aligned_cols=124 Identities=27% Similarity=0.360 Sum_probs=99.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHH-----HHHHHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVE-----AVIKDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|++|++.+|+ .|+.||+.+.... ....+.. ..++.+++.+ ++.. .++++.+|||||+||++||||
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 56999999998876 5999999764321 1111111 1133445555 5543 577899999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||+|||+.++..+.+.++++.+ +.|+|++||+++++..||++.
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~ 219 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVERADQIL 219 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEE
Confidence 9999999999999999999999999999999863 589999999999997799875
No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.3e-28 Score=191.51 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=112.9
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcC----CChhHHHHHHHHHHHHcCCC-CCCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYN----IPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.|+.++|+.+++|++||.||+.++....+ +.+....+....++..+++. ..+.++.+||.||||.|+||||+..+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 48999999999999999999987644322 34566777777788777763 36889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++++|||||||.|+....+.++++++++++ +|.++|++||.|+++.+ ||++++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHhcCEEEE
Confidence 999999999999999999999999999974 69999999999999999 999874
No 246
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-28 Score=170.46 Aligned_cols=93 Identities=40% Similarity=0.807 Sum_probs=86.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.++|+||++.+++.+|+.||+. ||+||+||++||||++.+|+++
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 56999999999999899999974 9999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||||||+|||+.++..+.+.|+++.++ |.|+|++||+++++.. ||++.
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~ 166 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVA 166 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEE
Confidence 999999999999999999999999764 8899999999999987 88875
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.7e-28 Score=182.19 Aligned_cols=125 Identities=24% Similarity=0.382 Sum_probs=101.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC------------CC-hhHHHHHHHHHHHHcCCC-----CCCCCCCCCChH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN------------IP-RSSVEAVIKDLQLVLDLP-----PGNQLCSTLSGG 69 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~------------~~-~~~~~~~~~~~~~~~~l~-----~~~~~~~~LS~G 69 (137)
+.++|++|++.+++. |++||+.+.....+ .. .....+.+..+++.+++. ..++++.+||||
T Consensus 126 ~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 126 KRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 569999999988874 99999987643211 11 112234456666666652 247789999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 70 ~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
|+||++||+||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEE
Confidence 99999999999999999999999999999999999999999864 4799999999999987 9985
No 248
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=8.6e-29 Score=178.02 Aligned_cols=120 Identities=29% Similarity=0.370 Sum_probs=93.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CC-----------CCCCCCChHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GN-----------QLCSTLSGGQARRVS 75 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-----------~~~~~LS~G~kqrv~ 75 (137)
+.++|++|++.+++ .|+.||+.+.... .... .+..+++.+++.. .+ ..+.+||||||||++
T Consensus 78 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~--~~~~----~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~ 150 (220)
T cd03245 78 RNIGYVPQDVTLFY-GTLRDNITLGAPL--ADDE----RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVA 150 (220)
T ss_pred hhEEEeCCCCcccc-chHHHHhhcCCCC--CCHH----HHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHH
Confidence 46999999998887 5999998764211 1111 2223333333321 22 245799999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||++.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||++.
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~d~v~ 209 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRII 209 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999864 379999999999886588874
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=180.50 Aligned_cols=128 Identities=20% Similarity=0.326 Sum_probs=101.0
Q ss_pred CcEEEEeccCCCC--CCCCHHHHHHHHHH----hcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALF--EEFTISETFAFFSK----LYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~--~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|+||++.+. ...++.+|+.+... .........+..++.+++.+++.. .++++.+||||||||++|||||
T Consensus 78 ~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 78 NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred ceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 3599999998652 23468888764321 001111223345566777778854 6889999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~~~~~d~v~ 213 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSVTEFCDYTV 213 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999875 48899999999999877 88764
No 250
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-28 Score=171.36 Aligned_cols=97 Identities=37% Similarity=0.556 Sum_probs=88.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+.++|++|++.+++..|+.||+.+. ||+|||||++||+|++.+|++
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~l 121 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDV 121 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCE
Confidence 35799999999988889999997642 999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.+++++++.|.|+|++||+++++.. ||++.
T Consensus 122 lilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~ 172 (178)
T cd03229 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV 172 (178)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999876447899999999999987 89874
No 251
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=2.7e-28 Score=198.12 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=108.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCC-CCCCCC------CCChHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPP-GNQLCS------TLSGGQARRVSIA 77 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~------~LS~G~kqrv~ia 77 (137)
+.+||++|++.+++.+||+||+.|...... .+.++.++.++.+++.+++.. .|+.++ .||||||||++||
T Consensus 99 ~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia 178 (617)
T TIGR00955 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFA 178 (617)
T ss_pred hhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHH
Confidence 468999999999999999999998776532 233445566788888888854 567665 5999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH-HHHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE-EARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~-~~~~-~d~~~ 136 (137)
++|+.+|++++|||||+|||+.++..+++.++++++ .|+|||+++|++. ++.. +|++.
T Consensus 179 ~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ 238 (617)
T TIGR00955 179 SELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKII 238 (617)
T ss_pred HHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEE
Confidence 999999999999999999999999999999999975 4899999999995 5555 89875
No 252
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.8e-28 Score=172.09 Aligned_cols=108 Identities=26% Similarity=0.345 Sum_probs=90.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+.++|++|++.+++.+|++||+.+..... .++++.+||+||+||++||||++.+|++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 356999999999999999999997653210 3567889999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEE-EEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII-ITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi-~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.++++.++.+.|++ +++|+.+++.. ||++.
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 9999999999999999999999998764456655 45677788776 88875
No 253
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=2.9e-28 Score=188.69 Aligned_cols=128 Identities=30% Similarity=0.409 Sum_probs=115.8
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHh---cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKL---YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.||+|+|+..+++++||.||+.++... ...+....++.++.+.+..|++. .++++.+||-|+||||.|.+||.++|
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCC
Confidence 499999999999999999999887532 12356677888889999999975 79999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++|||||||+-|.|...++++++++++++ .|+|||++||-++++.. |||+.+
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrvTV 212 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEVMAIADRVTV 212 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHHHHhhCeeEE
Confidence 99999999999999999999999999985 59999999999999999 999864
No 254
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-28 Score=191.85 Aligned_cols=126 Identities=27% Similarity=0.426 Sum_probs=101.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHcCCCC-CCCCC----CCCChHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVLDLPP-GNQLC----STLSGGQARRVSIAVT 79 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~----~~LS~G~kqrv~ia~a 79 (137)
+++++|++|+|.+|+. |++||+.++.. ..+++++.+.++.. .+.+.-+. .|..+ ..|||||+||+++|||
T Consensus 394 ~k~i~~v~Q~p~lf~g-TireNi~l~~~--~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 394 RKQISWVSQNPYLFAG-TIRENILLARP--DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HhHeeeeCCCCccccc-cHHHHhhccCC--cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 3679999999999997 99999987532 23445555555433 22222222 24444 5599999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++.+++++||||||++||.++.+.+.+.|.++.+ ++||+++||++..+..+|+|.+
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~~D~I~v 526 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAADADRIVV 526 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhcCCEEEE
Confidence 9999999999999999999999999999999975 5899999999999999999863
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=5.3e-28 Score=169.70 Aligned_cols=97 Identities=26% Similarity=0.475 Sum_probs=87.4
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.++|++|++ .+++.+|+.||+.+... ||+|||||++||||++.+|
T Consensus 75 ~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 75 AGIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred CCeEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCC
Confidence 4699999985 57888999999876421 9999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+++||||||+|||+.+++.+.+.++++++ .|.|+|++||+++++.. ||++.
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~v~ 175 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELDELLGLCDRIL 175 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999865 47899999999999988 89875
No 256
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-28 Score=176.98 Aligned_cols=125 Identities=28% Similarity=0.354 Sum_probs=96.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHH-----HHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI-----KDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.++|++|++.+++. |+.||+.++... ....+..... ..+.+.+ ++.. .++++.+||+|||||++||+
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~ 152 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIAR 152 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHH
Confidence 3569999999988876 999999764221 1122222211 1222222 3322 45678999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++.+|+++||||||+|||+.+++.+.+.+.++. + +.|||++||+++++..||++.
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~ 208 (229)
T cd03254 153 AMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKIL 208 (229)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEE
Confidence 9999999999999999999999999999999985 3 789999999999997798874
No 257
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.7e-28 Score=191.71 Aligned_cols=128 Identities=22% Similarity=0.329 Sum_probs=102.1
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHH-----HHHhcCC-ChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAF-----FSKLYNI-PRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~i 76 (137)
+.+||++|++ .+|+++|+.+|..+ .....+. +....+..+..+++.+++. . .++++.+||||||||++|
T Consensus 323 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 402 (491)
T PRK10982 323 HGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVII 402 (491)
T ss_pred CCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHH
Confidence 3489999985 47888888777322 1111121 2223344556677777774 3 689999999999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+|++.+|++|||||||+|||+.+++.+++.+.++.+ .|.|||++|||++++.. ||++.
T Consensus 403 a~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~~~~~d~v~ 462 (491)
T PRK10982 403 GRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRIL 462 (491)
T ss_pred HHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHHHhhCCEEE
Confidence 9999999999999999999999999999999999875 48999999999999988 89875
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=2e-28 Score=178.11 Aligned_cols=124 Identities=33% Similarity=0.455 Sum_probs=96.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHH-----HHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI-----KDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|++|++.+++ .|+.||+.++... ....+..... ..+...+ ++.. .++++.+|||||+||++||+|
T Consensus 77 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~a 153 (238)
T cd03249 77 SQIGLVSQEPVLFD-GTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARA 153 (238)
T ss_pred hhEEEECCchhhhh-hhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHH
Confidence 46999999998876 5999999764321 1122222111 1122222 2322 467789999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||+|||+.+++.+.+.|++++ .|.|||++||+++++..||++.
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~~~~d~v~ 208 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTIRNADLIA 208 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHhhCCEEE
Confidence 999999999999999999999999999999985 4889999999999997788875
No 259
>KOG0058|consensus
Probab=99.95 E-value=1.3e-28 Score=197.52 Aligned_cols=126 Identities=32% Similarity=0.458 Sum_probs=103.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHH---cCCCC-C----CCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV---LDLPP-G----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~----~~~~~~LS~G~kqrv~ia~ 78 (137)
.++||+|.|+|.+|.. |++|||.|+.. +.+.+++..+++..... ..+++ - .++..+||||||||++|||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 3679999999999987 99999998754 44555555554433221 12333 2 3455689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|.||||||.||+||.++...+.+.+.++.+ ++|||+|.|.++.++.||+|++
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad~Ivv 674 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVV 674 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhccEEEE
Confidence 99999999999999999999999999999998864 5899999999999999999874
No 260
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=6.1e-28 Score=171.03 Aligned_cols=101 Identities=41% Similarity=0.586 Sum_probs=88.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+.++|++|++.+++.+|+.||+.+..... +||+||+||++||||++.+|++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~----------------------------~LS~G~~qrv~laral~~~p~i 132 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLR----------------------------GLSGGERKRVSIALELVSNPSL 132 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhc----------------------------cCCHHHHHHHHHHHHHHcCCCE
Confidence 356999999999999899999997643210 7999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH-HHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE-EARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~-~~~~-~d~~~ 136 (137)
+||||||+|||+.+++.+.+.|+++.+ .|.|+|++||+++ ++.. ||++.
T Consensus 133 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~ 183 (194)
T cd03213 133 LFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLL 183 (194)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEE
Confidence 999999999999999999999999865 4899999999996 5665 88875
No 261
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=194.30 Aligned_cols=128 Identities=29% Similarity=0.330 Sum_probs=110.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|++.+|+.+|+.||+.+.....+....+.++....+++.+++.. .++++.+||+||+||++|||||+.+|++
T Consensus 86 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~l 165 (648)
T PRK10535 86 EHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQV 165 (648)
T ss_pred ccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 569999999999999999999987654444444444556667777788854 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.+++.+.++++++++ .|.|++++||+++.+..||+++
T Consensus 166 LllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~~~~d~i~ 214 (648)
T PRK10535 166 ILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVAAQAERVI 214 (648)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHHHhCCEEE
Confidence 999999999999999999999999874 5899999999999997799875
No 262
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=7.8e-28 Score=171.73 Aligned_cols=114 Identities=26% Similarity=0.299 Sum_probs=93.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
++.++|++|++.+++. |+.+|+.+.. .....+ +...+. .++++.+|||||+||++||||++.+|++
T Consensus 81 ~~~i~~v~q~~~~~~~-tv~~~l~~~~---~~~~~~----~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~l 146 (207)
T cd03369 81 RSSLTIIPQDPTLFSG-TIRSNLDPFD---EYSDEE----IYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRV 146 (207)
T ss_pred HhhEEEEecCCcccCc-cHHHHhcccC---CCCHHH----HHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 3569999999988875 9999996531 112211 222222 3567899999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.++..+.+.|+++. + |.|+|++||+++++..||++.
T Consensus 147 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~ 194 (207)
T cd03369 147 LVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKIL 194 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEE
Confidence 99999999999999999999999984 3 789999999999997788864
No 263
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.5e-28 Score=175.07 Aligned_cols=124 Identities=27% Similarity=0.357 Sum_probs=96.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHH-----HHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI-----KDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|++|++.+++ .|+.||+.++.. ..+........ ......+ ++.. .++++.+||+|||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 75 RAIGVVPQDTVLFN-DTIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred hhEEEECCCChhhc-chHHHHHhhcCC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 45999999998886 599999977532 11222222111 1122222 2222 356788999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+.+|+++||||||+|||+.++..+.+.|.+++ + |.|||++||+++++..||+++
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~d~~~ 206 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVNADKII 206 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEE
Confidence 999999999999999999999999999999986 3 889999999999997798875
No 264
>KOG0059|consensus
Probab=99.95 E-value=3.3e-28 Score=203.73 Aligned_cols=131 Identities=36% Similarity=0.640 Sum_probs=122.2
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-CCCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
..+.+||+||...+++.+|.+|++.+.++++++++.++++.++.+++.+++. ..+++++.+|||+|+|+++|.|++.+|
T Consensus 638 ~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p 717 (885)
T KOG0059|consen 638 VRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDP 717 (885)
T ss_pred hhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCC
Confidence 4567999999999999999999999999999998888899999999999985 489999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++++|||||+|+||.+++.+++++.+.++ +|+++|++||.|++++. |||+++
T Consensus 718 ~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 718 SVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhhe
Confidence 99999999999999999999999999986 45599999999999999 999863
No 265
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=5.4e-28 Score=168.42 Aligned_cols=92 Identities=34% Similarity=0.473 Sum_probs=84.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+.++|++|++.+++. |+.||+ |||||+||++||||++.+|++
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 3568999999988875 999987 999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.++..+.+.++++++ .|.|+|++||+++++..||++.
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~d~v~ 166 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLASADRIL 166 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEE
Confidence 999999999999999999999999875 4899999999999987799875
No 266
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9.1e-28 Score=169.83 Aligned_cols=100 Identities=31% Similarity=0.409 Sum_probs=88.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.++|++|++.+++.+|++||+.+..... +|||||+||++||||++.+|+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALLR----------------------------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHHh----------------------------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 46899999999999899999998642110 89999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH-HHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~-~~~-~d~~~ 136 (137)
||||||+|||+.++..+.+.++++++ .|.|+|++||+++. +.. ||++.
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~ 180 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLL 180 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEE
Confidence 99999999999999999999999875 48999999999984 555 88875
No 267
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=4.8e-28 Score=192.07 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=99.1
Q ss_pred CcEEEEeccCCC--C-C-----CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIAL--F-E-----EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l--~-~-----~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+.+||++|++.+ + + .+|+.+|+.+. . ...+.++.+++.+++.. .++++.+||||||||++||+
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~ 148 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------V-KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQ 148 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc-------h-hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHH
Confidence 348999998642 1 1 46777776432 1 12345567777888854 68999999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||+.+|+++||||||+|||+.+++.+.+.|+++++ .|.|||++||+++++.. ||++.
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~~~~~d~v~ 206 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAG 206 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEE
Confidence 99999999999999999999999999999999975 48899999999999988 89875
No 268
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=2.9e-27 Score=172.80 Aligned_cols=128 Identities=21% Similarity=0.251 Sum_probs=99.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-h--cC----CChhHHHHHHHHHHHHcCCC-C-CCCCCC-CCChHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-L--YN----IPRSSVEAVIKDLQLVLDLP-P-GNQLCS-TLSGGQARRVSIA 77 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~--~~----~~~~~~~~~~~~~~~~~~l~-~-~~~~~~-~LS~G~kqrv~ia 77 (137)
..++|++|++.+++.+++.+++.+... . .. .........++.+++.++++ . .++.+. +||||||||++||
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 459999999988887777666543211 0 11 01112334555666777774 2 456664 8999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
||++.+|+++||||||+|||+.++..+.+.++++++ .|.|||++|||++++.. +|+++
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~ 217 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH 217 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEE
Confidence 999999999999999999999999999999999864 47899999999999987 68764
No 269
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.2e-28 Score=168.79 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=108.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++|+|+.|.|.+|+. ||+||+.|+.+++.... ...+...++..++++. .++++.+||||||||++|+|-|...|+
T Consensus 77 q~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ 153 (223)
T COG4619 77 QQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153 (223)
T ss_pred HHHHHHHcCcccccc-chhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCc
Confidence 568999999999998 99999999877654322 2345556667777764 689999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
|||||||||.||+.+++.+-++|.++.+++..+++.+|||.+.+.+ +|++
T Consensus 154 ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~ 204 (223)
T COG4619 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKV 204 (223)
T ss_pred eEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheE
Confidence 9999999999999999999999999886778999999999999766 7764
No 270
>KOG0055|consensus
Probab=99.95 E-value=2.6e-28 Score=204.66 Aligned_cols=129 Identities=29% Similarity=0.411 Sum_probs=106.6
Q ss_pred ccCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH---HcCCCC-CCCCC----CCCChHHHHHHH
Q psy17960 4 ATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPP-GNQLC----STLSGGQARRVS 75 (137)
Q Consensus 4 ~~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~~~----~~LS~G~kqrv~ 75 (137)
.+-++++|.|.|+|.||+. |++||+.|+ . ...+.+++.++++.+.. ...++. .|.++ .+||||||||++
T Consensus 1060 ~~LR~~i~lVsQEP~LF~~-TIrENI~YG-~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1060 KWLRKQIGLVSQEPVLFNG-TIRENIAYG-S-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred HHHHHhcceeccCchhhcc-cHHHHHhcc-C-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 3446789999999999986 999999997 2 22455665555544432 224554 35554 589999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||||++++|+||||||.||+||.++.+.+.+.|.+.. .|+|.|+++|.+..++.||.|++
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTIqnaD~I~V 1196 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTIQNADVIAV 1196 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhhhcCCEEEE
Confidence 9999999999999999999999999999999999986 38999999999999999999875
No 271
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=1.7e-27 Score=191.52 Aligned_cols=125 Identities=27% Similarity=0.373 Sum_probs=102.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-hc-------------CCChh----------------------HHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-LY-------------NIPRS----------------------SVEAVIKDLQ 51 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~~-------------~~~~~----------------------~~~~~~~~~~ 51 (137)
..+||++|++.+++.+|+.||+.++.. ++ ..... +....+..++
T Consensus 70 ~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 70 IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 469999999999999999999986421 00 10100 1123455667
Q ss_pred HHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 52 LVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 52 ~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
+.+++...++++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|+++. .|||++|||++++..
T Consensus 150 ~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviiisHd~~~~~~ 225 (556)
T PRK11819 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAVTHDRYFLDN 225 (556)
T ss_pred HhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEEeCCHHHHHh
Confidence 7777755688999999999999999999999999999999999999999999999998762 499999999999988
Q ss_pred -ccccc
Q psy17960 132 -ADMRE 136 (137)
Q Consensus 132 -~d~~~ 136 (137)
||++.
T Consensus 226 ~~d~i~ 231 (556)
T PRK11819 226 VAGWIL 231 (556)
T ss_pred hcCeEE
Confidence 88875
No 272
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=3.9e-28 Score=210.90 Aligned_cols=128 Identities=29% Similarity=0.410 Sum_probs=100.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
+++||||+|+|.+|+. |++||+.++.. ..+.+++.++++.+. + ...++. .+. ....||||||||++|||
T Consensus 1295 R~~i~~V~Qep~LF~g-TIreNI~~g~~--~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIAR 1371 (1466)
T PTZ00265 1295 RNLFSIVSQEPMLFNM-SIYENIKFGKE--DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIAR 1371 (1466)
T ss_pred HhhccEeCCCCccccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHH
Confidence 4679999999999975 99999998632 234444444443321 1 112333 243 44679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|+|||||||||+||+.+.+.+.+.|.++....++|+|+|||+++.+..||+|++
T Consensus 1372 ALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv 1430 (1466)
T PTZ00265 1372 ALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE
Confidence 99999999999999999999999999999998752347899999999999999999864
No 273
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=4.7e-28 Score=179.85 Aligned_cols=120 Identities=23% Similarity=0.353 Sum_probs=96.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCC-----------CCChHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCS-----------TLSGGQARRV 74 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-----------~LS~G~kqrv 74 (137)
++.++|+||++.+|+. |+++|+..+. ....+ .+..+++.+++.. .++.+. .||+||+||+
T Consensus 76 r~~i~~v~q~~~lf~~-tv~~nl~~~~---~~~~~----~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl 147 (275)
T cd03289 76 RKAFGVIPQKVFIFSG-TFRKNLDPYG---KWSDE----EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLM 147 (275)
T ss_pred hhhEEEECCCcccchh-hHHHHhhhcc---CCCHH----HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 3579999999999985 9999996431 12222 2333444555532 344444 4999999999
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||++.+|+++||||||+|||+.+...+.+.|++.. .++|||++||+++++..||++.
T Consensus 148 ~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~dri~ 207 (275)
T cd03289 148 CLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLECQRFL 207 (275)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999874 3799999999999998899875
No 274
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=2.6e-27 Score=187.31 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=102.0
Q ss_pred eccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCC
Q psy17960 14 PQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP 92 (137)
Q Consensus 14 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEP 92 (137)
.+.+.+++.+|+.||+.+.....+.+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+|+++|||||
T Consensus 91 ~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEP 170 (549)
T PRK13545 91 AISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEA 170 (549)
T ss_pred EeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 334556777899999987554434444444555667777788854 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 93 TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 93 t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+|||+.++..+.+.|.++++ .|.|||++||+++++.. ||++.
T Consensus 171 TsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIi 214 (549)
T PRK13545 171 LSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKAL 214 (549)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999864 58899999999999988 99875
No 275
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=1.3e-27 Score=193.22 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=98.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+|++|++.+|+. |+++|+.++. ..+.+++.+.++.+ ...+ |+.. -.....+||||||||++|||
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC---CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 4679999999999997 9999998853 23344444433322 1111 1111 12345679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++.+|+++|||||||+||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+++
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~~~D~ii 545 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVEADTIL 545 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEE
Confidence 99999999999999999999999999999998753 689999999999999999975
No 276
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=7.3e-28 Score=196.77 Aligned_cols=127 Identities=28% Similarity=0.385 Sum_probs=100.0
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCC-C----CCCCCCCChHHHHHHHHH
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPP-G----NQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~-~----~~~~~~LS~G~kqrv~ia 77 (137)
-+++||||+|++.+|.. |++||+.++.. ..+.+++.+++.... + ...++. . .+....||||||||++||
T Consensus 545 lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p--~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA 621 (709)
T COG2274 545 LRRQVGYVLQDPFLFSG-SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621 (709)
T ss_pred HHhheeEEcccchhhcC-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence 35789999999999987 99999987532 122233333322211 1 112222 1 345578999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||++++|++||||||||+||+.+.+.+.+.|.++. .|+|+|++||++..+..||+|.+
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~ti~~adrIiV 679 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLSTIRSADRIIV 679 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccchHhhhccEEEE
Confidence 99999999999999999999999999999999986 37999999999999999999864
No 277
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=3.6e-27 Score=189.52 Aligned_cols=125 Identities=26% Similarity=0.318 Sum_probs=100.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh-c-------------CCChhH----------------------HHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL-Y-------------NIPRSS----------------------VEAVIKDLQ 51 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~-~-------------~~~~~~----------------------~~~~~~~~~ 51 (137)
..|||++|++.+++++|+.||+.++... . .....+ ....+..++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999864321 0 001110 112344455
Q ss_pred HHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 52 LVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 52 ~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
+.++++..++++.+||||||||++||+||+.+|+++||||||++||+.++..+.+.|+++ +.|||++|||++++..
T Consensus 148 ~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~ 223 (552)
T TIGR03719 148 DALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDN 223 (552)
T ss_pred hhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHh
Confidence 666665467889999999999999999999999999999999999999999999999875 2499999999999988
Q ss_pred -ccccc
Q psy17960 132 -ADMRE 136 (137)
Q Consensus 132 -~d~~~ 136 (137)
||++.
T Consensus 224 ~~d~v~ 229 (552)
T TIGR03719 224 VAGWIL 229 (552)
T ss_pred hcCeEE
Confidence 88875
No 278
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=2.9e-27 Score=169.98 Aligned_cols=124 Identities=28% Similarity=0.365 Sum_probs=93.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHcC-----CCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVLD-----LPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-----l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.++|++|++.+++ .|+.||+.+... .......+..+.+ ...+. ... .+.++.+||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~-~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 79 YSVAYAAQKPWLLN-ATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred ceEEEEcCCCcccc-ccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 56999999998874 699999976431 1222222222211 11111 111 246789999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHH--HHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWK--YLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~--~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||+|||+.++..+++ +++.++ +.|.|+|++||+++.+..||++.
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~~~d~i~ 212 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLPHADWII 212 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHhhCCEEE
Confidence 999999999999999999999999998 666665 45889999999999987798874
No 279
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=2.4e-27 Score=164.31 Aligned_cols=95 Identities=31% Similarity=0.350 Sum_probs=84.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.++|++|++.++ ..|+.||+.++ ++.+||||||||+++|||++.+|+++
T Consensus 64 ~~i~~~~q~~~~~-~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 64 EDLLFLPQRPYLP-LGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred ceEEEECCCCccc-cccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 5799999998765 56999998652 35689999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||||+|||+.+++.+.+.++++ +.|+|++||+++....||++.
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~~~~d~i~ 158 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPSLWKFHDRVL 158 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChhHHhhCCEEE
Confidence 999999999999999999999875 479999999998876688875
No 280
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=2.1e-27 Score=166.09 Aligned_cols=93 Identities=28% Similarity=0.487 Sum_probs=84.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.++|++|++.+++ .|++||+ +.+||+||+||++||||++.+|+++
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 46899999988876 5998887 5689999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||||+|||+.+++.+.+.+.++. + +.|||++||+++++..||++.
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~ 167 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIEHMDKIL 167 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEE
Confidence 9999999999999999999999984 3 789999999999997788875
No 281
>PLN03140 ABC transporter G family member; Provisional
Probab=99.95 E-value=4.8e-27 Score=203.84 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=107.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCC-CCCCC-----CCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPP-GNQLC-----STLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~-----~~LS~G~kqrv~ia~ 78 (137)
+.+||++|++.+++.+||+||+.+.+..+. .+.++..+.++.+++.+++.. .++.+ +.||||||||++||+
T Consensus 953 ~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~ 1032 (1470)
T PLN03140 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAV 1032 (1470)
T ss_pred hheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHH
Confidence 458999999999999999999998765431 223334456778888888854 56665 689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH-HHh-ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQ-ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~-~~~-~d~~~ 136 (137)
+|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++. +.. +|++.
T Consensus 1033 aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1033 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999975 48999999999983 544 88875
No 282
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.7e-27 Score=168.65 Aligned_cols=123 Identities=28% Similarity=0.340 Sum_probs=93.1
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH--HHHHc-----CCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVL-----DLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~-----~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.|+|++|++.+++ .|++||+.+.... ..+...+..+. +...+ ++.. .++++.+||+|||||++||||+
T Consensus 67 ~i~~~~q~~~l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 67 SIAYVSQEPWIQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEEEEecCchhcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 4899999999885 6999999874321 22122222111 11111 1211 3567889999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWK-YLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||+|||+.+++.+.+ ++++..+ .|.|||++||+++.+..||++.
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~~~~d~i~ 198 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLLPHADQIV 198 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHHhhCCEEE
Confidence 99999999999999999999999998 4666654 4789999999999998888874
No 283
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.9e-27 Score=187.41 Aligned_cols=125 Identities=31% Similarity=0.418 Sum_probs=101.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHH-h----------cCCC---------------------hhHHHHHHHHHHHHcC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSK-L----------YNIP---------------------RSSVEAVIKDLQLVLD 55 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~-~----------~~~~---------------------~~~~~~~~~~~~~~~~ 55 (137)
..+||++|++.+++.+|+.||+.++.. . .... ..+.+..+..+++.++
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 469999999999999999999876421 0 0000 0012345566777788
Q ss_pred CCC--CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-c
Q psy17960 56 LPP--GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-A 132 (137)
Q Consensus 56 l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~ 132 (137)
+.. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||++++.. |
T Consensus 144 l~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 144 IPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred CChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhc
Confidence 854 3568899999999999999999999999999999999999999999999863 37899999999999988 8
Q ss_pred cccc
Q psy17960 133 DMRE 136 (137)
Q Consensus 133 d~~~ 136 (137)
|+++
T Consensus 220 d~i~ 223 (530)
T PRK15064 220 THMA 223 (530)
T ss_pred ceEE
Confidence 9875
No 284
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=2.1e-27 Score=189.76 Aligned_cols=126 Identities=27% Similarity=0.408 Sum_probs=97.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HHc-CCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LVL-DLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
++++||++|++.+|+. |++||+.++.. ..+.++..+.++.+. +.. .++. ..+...+||||||||++|||
T Consensus 395 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAG-TIAENIRLARP--DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HhheEEEcCCCcccCc-CHHHHHhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 3579999999999985 99999987531 123333333332211 111 1111 12345789999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+..||++.+
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHhCCEEEe
Confidence 9999999999999999999999999999999875 47899999999999988999863
No 285
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=192.09 Aligned_cols=126 Identities=25% Similarity=0.373 Sum_probs=97.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHc-CCCC-CC----CCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVL-DLPP-GN----QLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~-~~----~~~~~LS~G~kqrv~ia~ 78 (137)
++.|+|+||++.+|+. |++||+.++.. ...+.++..+..+.+ .+.. .++. .+ ....+||||||||++|||
T Consensus 416 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 416 RNQVALVSQNVHLFND-TIANNIAYART-EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred HhhceEEccCceeecc-hHHHHHhcCCC-CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 3679999999999986 99999987421 112334444443322 1111 1222 12 334679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++|||||||+||+.+...+.+.+.++. .++|+|++||+++.+..||+|.
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~~~~D~Ii 549 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTIEKADEIL 549 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHhCCEEE
Confidence 9999999999999999999999999999999875 3689999999999999999985
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=2.5e-27 Score=187.96 Aligned_cols=129 Identities=19% Similarity=0.334 Sum_probs=99.9
Q ss_pred CcEEEEeccCCCCCC--CCHHHHHHHHHH----hcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEE--FTISETFAFFSK----LYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~--ltv~e~l~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.+||++|++.+++. .++.+++.+... .+.......++.++.+++.+++.. .++++.+||||||||++||+|
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 469999998765442 466666543211 111111223445667778888853 588999999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
++.+|++|||||||+|||+.+++.+.+.|++++++.+.|||++|||++++.. ||++.
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~ 474 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE 474 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE
Confidence 9999999999999999999999999999999976534579999999999975 67764
No 287
>KOG0055|consensus
Probab=99.95 E-value=7.6e-28 Score=201.91 Aligned_cols=128 Identities=31% Similarity=0.444 Sum_probs=98.2
Q ss_pred cCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH---HcCCCC-C----CCCCCCCChHHHHHHHH
Q psy17960 5 TGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPP-G----NQLCSTLSGGQARRVSI 76 (137)
Q Consensus 5 ~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~----~~~~~~LS~G~kqrv~i 76 (137)
+-+.+||.|+|+|.+|. .|++||+.|+.. +-+.+++.++.+.+.. ...++. . -+...+||||||||++|
T Consensus 424 ~lr~~iglV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 424 WLRSQIGLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred HHHhhcCeeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHH
Confidence 33467999999998887 599999998532 1223343333322111 111221 1 23344699999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||||+++|+|||||||||+||+.+.+.+.+.|.+.. .|+|.|+++|++..+..+|+|++
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStIrnaD~I~v 559 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTIRNADKIAV 559 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhhhccCEEEE
Confidence 999999999999999999999999999999999886 37899999999999999999874
No 288
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=2.3e-27 Score=194.58 Aligned_cols=123 Identities=28% Similarity=0.301 Sum_probs=96.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHc-CCCC-CC----CCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVL-DLPP-GN----QLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~-~~----~~~~~LS~G~kqrv~ia~ 78 (137)
+++|||++|++.+|+. |++||+.++.. .+.++..+.++.+ .+.. .++. .+ ....+||||||||++|||
T Consensus 526 r~~i~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 526 RRQLGVVLQNGRLMSG-SIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HhccEEEccCCccCcc-cHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 4679999999999987 99999987522 2344444333321 1111 1222 12 345689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+++|||||||+||+.+.+.+.+.++++ ++|+|++||+++.+..+|+|.+
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iiv 656 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYV 656 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEE
Confidence 999999999999999999999999999999775 4699999999999999999863
No 289
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=5.9e-27 Score=187.90 Aligned_cols=126 Identities=29% Similarity=0.404 Sum_probs=98.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHH-----HHHHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK-----DLQLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.++|++|++.+|+. |++||+.++.. ..+.++..+..+ .+.+.+ |+.. ..+...+||||||||++|||
T Consensus 391 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 391 GKHIGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred hhheEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHH
Confidence 4579999999999986 99999985321 123333333322 222222 2222 34567889999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++||||||+|||+.+++.+.+.+.++.. .|+|+|++||+++.+..||++.
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~~~~d~i~ 524 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLLGCVDKIL 524 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999998853 4789999999999888899875
No 290
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2e-27 Score=170.96 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=95.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHH--cCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLV--LDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.++|++|++.+++ .|+.||+.+.. .....+..+.++.+ ... .++.. .++++.+||+||+||++|||
T Consensus 77 ~~~i~~~~q~~~l~~-~tv~enl~~~~---~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 77 RSRISIIPQDPVLFS-GTIRSNLDPFG---EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred hhhEEEECCCCcccc-chHHHHhCcCC---CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 456999999998776 59999986432 11222222222211 111 12222 35688999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..||++.
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~ 208 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIIDSDRIL 208 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhhCCEEE
Confidence 99999999999999999999999999999999853 589999999999998898875
No 291
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.95 E-value=3.5e-27 Score=190.67 Aligned_cols=125 Identities=25% Similarity=0.296 Sum_probs=97.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.|+|++|++.+|+. |++||+.++. ...+.++....++.+ ...+ |++. .......||||||||++|||
T Consensus 408 r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 408 RRNIAVVFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484 (588)
T ss_pred HhheEEEecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHH
Confidence 3679999999999986 9999998752 123344444333322 1111 1211 12345679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++|||||||+||+.+.+.+.+.+.+.. .++|+|++||+++.+..||++.
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~~~~D~ii 540 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTVRNADRIL 540 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHHHhCCEEE
Confidence 9999999999999999999999999999998874 3789999999999998899875
No 292
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=6.3e-27 Score=188.08 Aligned_cols=122 Identities=21% Similarity=0.202 Sum_probs=100.6
Q ss_pred cEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 9 MLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 9 ~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.|||++|++ .+++.+|+.||+.++....+.... ....+.++..+++. . .++++.+||||||||++||+|++.+|+
T Consensus 386 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ 463 (552)
T TIGR03719 386 KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGN 463 (552)
T ss_pred EEEEEeCCccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 589999997 488889999999876432222211 12234567777875 3 588999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|+++. + |||++|||++++.. ||++.
T Consensus 464 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 464 VLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRWFLDRIATHIL 511 (552)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999872 4 89999999999988 89875
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=2.3e-27 Score=191.38 Aligned_cols=121 Identities=27% Similarity=0.429 Sum_probs=96.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC------C-CC----CCCCCCChHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP------P-GN----QLCSTLSGGQARRVS 75 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~----~~~~~LS~G~kqrv~ 75 (137)
++.|+|++|++.+|+. |++||+.++.. ..+.++..+.++ ..++. . .+ ....+||||||||++
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~al~----~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAAP--NASDEALIEVLQ----QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCCC--ccCHHHHHHHHH----HcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 3569999999999986 99999987531 223333333333 22221 1 12 245679999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..||++.
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~~~~d~i~ 544 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGLEQFDRIC 544 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHHHhCCEEE
Confidence 9999999999999999999999999999999999875 3789999999999999899975
No 294
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=3.1e-27 Score=194.39 Aligned_cols=124 Identities=31% Similarity=0.461 Sum_probs=96.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HHc-CCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LVL-DLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|||++|++.+|+. |++||+.++.. ..+.++..+.++... +.. .++. ..+...+||||||||++|||
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHH
Confidence 5679999999999986 99999987421 223444444433221 111 1221 12345689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+++|||||||+||+.+.+.+.+.+++ .++|+|++||+++.+..||+|.+
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~~D~Iiv 683 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIV 683 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEE
Confidence 99999999999999999999999999999875 37899999999999999999753
No 295
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=3.9e-27 Score=189.69 Aligned_cols=126 Identities=30% Similarity=0.419 Sum_probs=100.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHH-cCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLV-LDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
+++|||++|++.+|.. |++||+.++.. ..+.+++.++++.+ .+. ..++. .+. ....||||||||++|||
T Consensus 402 r~~I~~V~Qd~~LF~~-TI~~NI~~g~~--~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiAR 478 (567)
T COG1132 402 RKRIGIVSQDPLLFSG-TIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIAR 478 (567)
T ss_pred HHhccEEcccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHH
Confidence 4679999999999995 99999998642 13445555554433 111 12222 233 44589999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++.+|++++||||||+||+.+...+.+.+.++. +++|+++++|.++.+..||+|.+
T Consensus 479 all~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlsti~~aD~IiV 535 (567)
T COG1132 479 ALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLSTIKNADRIIV 535 (567)
T ss_pred HHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhHHHhCCEEEE
Confidence 9999999999999999999999999999999876 35799999999999999999864
No 296
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=1e-26 Score=201.69 Aligned_cols=129 Identities=24% Similarity=0.390 Sum_probs=108.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCC-CCCCCC----CCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPP-GNQLCS----TLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~----~LS~G~kqrv~ia~ 78 (137)
++.+||++|++.+++.+||+||+.+...++. .+.++..+.++.+++.+++.. .++.++ +||||||||++||+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 3568999999888999999999998765532 233344566778888888854 677776 79999999999999
Q ss_pred HHhcCCC-eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH--Hhccccc
Q psy17960 79 TLLHSPD-IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA--RQADMRE 136 (137)
Q Consensus 79 al~~~p~-illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~--~~~d~~~ 136 (137)
+|+.+|+ +|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++.. ..+|++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl 974 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLL 974 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEE
Confidence 9999997 9999999999999999999999999975 589999999999863 3488875
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.94 E-value=8.6e-27 Score=187.43 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=100.8
Q ss_pred cEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 9 MLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 9 ~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+||++|++ .+++.+|+.||+.+.....+..... ...+.++..+++. . .++++.+||||||||++||+|++.+|+
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 465 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNRE--IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGN 465 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhcccccccccH--HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 589999996 6888899999998764322222111 1234567777875 3 588999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|.++. + |||++|||++++.. ||++.
T Consensus 466 lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 466 VLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999998862 4 89999999999988 99875
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=3.7e-27 Score=193.58 Aligned_cols=126 Identities=26% Similarity=0.352 Sum_probs=98.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHc-CCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVL-DLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.+||++|++.+|+. |++||+.++.. ..+.++..+.++.+ .+.. .++. ..+...+||||||||++|||
T Consensus 538 r~~i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 538 RRNIGYVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HhccEEECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 4679999999999986 99999987521 23344444443322 1111 1221 13445689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++.+|+++|||||||+||+.+.+.+.+.+.++. .++|+|++||+++.+..||+|.+
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~~~~~~D~iiv 671 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTSLLDLVDRIIV 671 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999885 37899999999999988999863
No 299
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=5.2e-27 Score=188.82 Aligned_cols=126 Identities=28% Similarity=0.399 Sum_probs=97.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HHc-CCCC-CC----CCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LVL-DLPP-GN----QLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~-~~----~~~~~LS~G~kqrv~ia~ 78 (137)
+++++|++|++.+|+. |++||+.++.. ...+.++..+.++.+. +.. .++. .| .....||||||||++|||
T Consensus 405 ~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 405 RRQVALVSQDVVLFND-TIANNIAYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred HhhceEEccCcccccc-cHHHHHhcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 3569999999999987 99999987521 1233444444333221 111 1221 12 334679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++.+|++++|||||++||..+.+.+.+.|.+.. .++|+|++||+.+.+..||++.
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~~~~D~ii 538 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTIEKADRIV 538 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHHHhCCEEE
Confidence 9999999999999999999999999999999874 3689999999999998899875
No 300
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=1.1e-26 Score=165.34 Aligned_cols=98 Identities=24% Similarity=0.328 Sum_probs=86.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
..++|+||++.+++..++.+++ +....+|||||+||++||||++.+|+++
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~il 126 (200)
T cd03217 77 LGIFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLA 126 (200)
T ss_pred CcEEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 3499999999888888887765 1123579999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH--hccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR--QADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~--~~d~~~ 136 (137)
||||||+|||+.++..+.+.+.++++ .+.|+|++||+++.+. .||++.
T Consensus 127 llDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~~~~~d~i~ 176 (200)
T cd03217 127 ILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLDYIKPDRVH 176 (200)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhhCCEEE
Confidence 99999999999999999999999864 4789999999999998 488874
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.9e-27 Score=162.56 Aligned_cols=90 Identities=39% Similarity=0.590 Sum_probs=82.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.++|++|++.+++ .|+.||+ ||+||+||++||+|++.+|+++
T Consensus 76 ~~i~~~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 76 KNIAYVPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred hhEEEEcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 45899999988776 5888886 9999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||||+|||+.++..+.+.++++. + +.|+|++||+++++..||++.
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~ 165 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLSTIRDADRII 165 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHHhCCEEE
Confidence 9999999999999999999999985 3 689999999999998798874
No 302
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.3e-26 Score=169.19 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=101.4
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
.++|++|...+++. ++.+++..... ....+.....+++.+++.. .++.+.+||+|||||++||||++.+|+++
T Consensus 88 ~i~~~~~~~~~~~~-~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 88 KVIVKPQYVDLIPK-AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred ceeeecchhccCch-HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 37889998888874 77888765421 1223345567777788854 67889999999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||||||+|||+.++..+.+.++++++ .++|||++||+++++.. ||++.
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~~~~ad~i~ 210 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVLDYLSDYIH 210 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999875 47899999999999987 99875
No 303
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=1.1e-26 Score=187.75 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=97.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHH--cCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLV--LDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.++|++|++.+|+. |++||+.++.. ..+.++..+..+.. ... .|+.. ..+...+||||||||++|||
T Consensus 408 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 408 RKSIATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred HhheEEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 3579999999999875 99999987521 22333333333221 111 12222 34567889999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||+.+|+++||||||+|||+.+.+.+.+.+.++. .++|+|++||+++.+..||++.
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~~~~d~i~ 540 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTVRNADLVL 540 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHHHcCCEEE
Confidence 9999999999999999999999999999998874 3789999999999998899875
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=6.2e-27 Score=192.64 Aligned_cols=125 Identities=27% Similarity=0.420 Sum_probs=97.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHc-CCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVL-DLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|||++|++.+|+. |++||+.++.. ...+.++..+.++.+ .+.. .++. ......+||||||||++|||
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 4679999999999987 99999987521 123344444433322 1111 1221 13345789999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++|||||||+||+.+.+.+.+.+.++ .++|+|++||+++.+..||+|.
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~~~~D~i~ 679 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVAKQSDKII 679 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHHHcCCEEE
Confidence 999999999999999999999999999999875 2689999999999998899985
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=185.32 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=98.8
Q ss_pred CcEEEEeccCC--CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIA--LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||++|++. +++.+|+.+|+.+.. . .. ..++.++.++..+++. . .++++.+||||||||++||+|++.+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 456 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---Q-EG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK 456 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---c-CC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC
Confidence 56999999874 566789999986431 1 11 1134456677777773 3 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.+++.+.+.++++ +.|||++|||++++.. ||++.
T Consensus 457 p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~ 506 (530)
T PRK15064 457 PNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRII 506 (530)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999875 2499999999999988 89875
No 306
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=5.8e-27 Score=187.29 Aligned_cols=115 Identities=23% Similarity=0.337 Sum_probs=88.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HH-cCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LV-LDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
+++|||+||++.+|+. |++||+.++.. ..+.++..+.++.+. +. ..++. .+. ...+||||||||++|||
T Consensus 407 r~~i~~V~Q~~~lF~~-TI~eNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 407 RRRISVFAQDAHLFDT-TVRDNLRLGRP--DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HhheEEEccCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 3579999999999987 99999988521 223444444443321 11 11222 233 34679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
|++++|+++|||||||+||+.+.+.+.+.+.+.. .++|+|++||++
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 9999999999999999999999999999998864 478999999984
No 307
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=1.2e-26 Score=189.70 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=96.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHcCCCC-CCC---------CCCCCChHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-PRSSVEAVIKDLQLVLDLPP-GNQ---------LCSTLSGGQARRVS 75 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~---------~~~~LS~G~kqrv~ 75 (137)
++.++|++|++.+++. |++||+.++...... .....++.+..+++.+++.. .++ ...+||||||||++
T Consensus 514 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~ 592 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIA 592 (659)
T ss_pred CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHH
Confidence 4579999999998887 999999875321111 00011223344555555532 222 34799999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||++++|+++||||||+|||+...+.+.+.+++ .|.|+|++||+++.+..||++.
T Consensus 593 iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 593 MARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEE
Confidence 99999999999999999999999999999998865 2789999999999998899875
No 308
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.94 E-value=2e-26 Score=189.81 Aligned_cols=124 Identities=25% Similarity=0.385 Sum_probs=93.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+|++|++.+|+. |++||+.++.. ..+.++..+.++.+ ...+ |++. ......+||||||||++|||
T Consensus 554 r~~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalAR 630 (711)
T TIGR00958 554 HRQVALVGQEPVLFSG-SVRENIAYGLT--DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIAR 630 (711)
T ss_pred HhhceEEecCcccccc-CHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHH
Confidence 3579999999999986 99999987532 22333333333322 1111 1111 12345689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+++|||||||+||+...+.+.+ .. . ..++|+|++||+++.+..||+|.+
T Consensus 631 ALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 631 ALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred HHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHHHHHhCCEEEE
Confidence 9999999999999999999999998888 22 2 247899999999999999999853
No 309
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.94 E-value=3e-26 Score=198.75 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=105.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC-------CChhHH-HHHHHHHHHHcCCCC-CCC-----CCCCCChHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN-------IPRSSV-EAVIKDLQLVLDLPP-GNQ-----LCSTLSGGQARR 73 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~-~~~~~~~~~~~~l~~-~~~-----~~~~LS~G~kqr 73 (137)
+.++|++|++.+++.+||+||+.+...... .++++. +...+.+++.+++.+ .++ .++.||||||||
T Consensus 138 ~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 138 GDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred ceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence 459999999999999999999998765431 222222 223456777788854 444 457899999999
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH-HHHHh-ccccc
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI-EEARQ-ADMRE 136 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~-~~~~~-~d~~~ 136 (137)
|+||++|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||+++|++ +.+.. +|++.
T Consensus 218 vsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~ 282 (1394)
T TIGR00956 218 VSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI 282 (1394)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE
Confidence 99999999999999999999999999999999999999865689999999997 56766 88875
No 310
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=1.5e-26 Score=186.43 Aligned_cols=125 Identities=30% Similarity=0.404 Sum_probs=97.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.++|++|++.+|+. |++||+.++.. ..+.++.....+... + ...++. ......+||||||||++|||
T Consensus 388 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 388 RSRLAVVSQTPFLFSD-TVANNIALGRP--DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR 464 (569)
T ss_pred HhheEEEccCCeeccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 3579999999999986 99999987521 123333333332211 0 111221 23456789999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+..||++.
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~~~~d~i~ 520 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSALTEASEIL 520 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHHHcCCEEE
Confidence 9999999999999999999999999999999875 3789999999999998899875
No 311
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-27 Score=167.64 Aligned_cols=129 Identities=27% Similarity=0.324 Sum_probs=114.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC--CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN--IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.++.+-|++.+...+||+|-+.|+...|. ....+.+..++.+++.+++.. .+++..+||||||||..+|+.++++.
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 456778899988889999999998765543 234556778888888888866 79999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++++||||.++||......++++++++.++-|+||+++-||+++++. +|.|+
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV 207 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV 207 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee
Confidence 99999999999999999999999999998889999999999999988 88764
No 312
>KOG0057|consensus
Probab=99.94 E-value=9.7e-27 Score=182.02 Aligned_cols=130 Identities=26% Similarity=0.379 Sum_probs=101.6
Q ss_pred cccCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH--Hc-CCCC-----CCCCCCCCChHHHHHH
Q psy17960 3 IATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VL-DLPP-----GNQLCSTLSGGQARRV 74 (137)
Q Consensus 3 ~~~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~-----~~~~~~~LS~G~kqrv 74 (137)
..+.++-||||||+..+|++ |+..|+.++.. ..+.+++.++.+.+.. .+ .++. ..++...||||||||+
T Consensus 420 ~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~--sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrv 496 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFND-TILYNIKYGNP--SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRV 496 (591)
T ss_pred hHHhhhheeEeCCcccccch-hHHHHhhcCCC--CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHH
Confidence 34556779999999999998 99999987632 2233444333332211 11 1111 1345678999999999
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++|||++.+|+|++||||||+||..+..++++.+.+. ..++|+|++-|+++.+.+||+|++
T Consensus 497 slaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~~DkI~~ 557 (591)
T KOG0057|consen 497 SLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIV 557 (591)
T ss_pred HHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhcCCEEEE
Confidence 9999999999999999999999999999999999884 358999999999999999999864
No 313
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=3.4e-26 Score=184.34 Aligned_cols=124 Identities=27% Similarity=0.376 Sum_probs=95.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.+||+||++.+|+. |++||+.++.. ..+.++..+.++.+ ...+ |+.. ..+....||||||||++||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRa 490 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARA 490 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCCC--CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHH
Confidence 569999999999986 99999987421 12233333333321 1111 1211 133456799999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++++|+++|||||||+||+.+.+.+.+.++++. .++|+|++||+++.+..+|++.
T Consensus 491 l~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~~~~d~vi 545 (576)
T TIGR02204 491 ILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATVLKADRIV 545 (576)
T ss_pred HHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHHHhCCEEE
Confidence 999999999999999999999999999999875 3789999999999998899874
No 314
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=5.5e-26 Score=163.16 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=93.8
Q ss_pred eccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCC
Q psy17960 14 PQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP 92 (137)
Q Consensus 14 ~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEP 92 (137)
.+.+.+++.+|+.||+.+....++....+... .+....++.. .++++.+||+|||||+++|+|++.+|+++|||||
T Consensus 55 ~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP 131 (213)
T PRK15177 55 GANSFILPGLTGEENARMMASLYGLDGDEFSH---FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGK 131 (213)
T ss_pred ccccccCCcCcHHHHHHHHHHHcCCCHHHHHH---HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 34567888999999999876655544333222 2233345543 5788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 93 TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 93 t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++|+.++..+.+.+.+..+ +.|+|++||+++++.. ||++.
T Consensus 132 ~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~ 174 (213)
T PRK15177 132 LYTGDNATQLRMQAALACQLQ--QKGLIVLTHNPRLIKEHCHAFG 174 (213)
T ss_pred CccCCHHHHHHHHHHHHHHhh--CCcEEEEECCHHHHHHhcCeeE
Confidence 999999999999998865433 3579999999999987 89875
No 315
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1.9e-26 Score=169.62 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=95.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHH-----HHHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAV-----IKDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
.+.++|++|++.+|+. |+++|+.... .......... +..+...+ ++.. .++++.+||+||+||++|||
T Consensus 94 ~~~i~~v~q~~~l~~~-tv~~nl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 94 RSRLSIILQDPILFSG-SIRFNLDPEC---KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hhhEEEECCCCccccc-HHHHhcCcCC---CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHH
Confidence 3569999999988875 9999875321 1111111211 11222222 3332 35677899999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++.+|+++||||||+|||+.++..+.+.++++. .+.|+|++||+++++..||+++
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~~~~dri~ 225 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTILDADLVL 225 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHHHhCCEEE
Confidence 9999999999999999999999999999999874 3789999999999998899875
No 316
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=2.4e-26 Score=188.89 Aligned_cols=125 Identities=27% Similarity=0.371 Sum_probs=98.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++.+||++|++.+|+. |++||+.++.. ..+.++..+.++.+ ...+ |++. ......+||||||||++|||
T Consensus 530 r~~i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lAR 606 (694)
T TIGR01846 530 RRQMGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIAR 606 (694)
T ss_pred HHhCeEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHH
Confidence 3569999999999986 99999987421 22334433333321 1111 2221 23456789999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+..||++.
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~ii 662 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTVRACDRII 662 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHHHhCCEEE
Confidence 9999999999999999999999999999999874 4789999999999998899975
No 317
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=1.5e-26 Score=201.12 Aligned_cols=78 Identities=35% Similarity=0.482 Sum_probs=71.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
.+.+.+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++.++.|+|+|++||+++.+..||+|++
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iiv 651 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 456789999999999999999999999999999999999999999999999865458999999999999988999863
No 318
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=162.91 Aligned_cols=130 Identities=28% Similarity=0.297 Sum_probs=109.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChh--HHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc-
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRS--SVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH- 82 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~- 82 (137)
++.-+.+||+..+-+.+||.|.+.++...++...+ +..+..+.++...++.. ..+.+.+|||||||||.+||.|++
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl 153 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQL 153 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHc
Confidence 34568899998877778999999998765543333 45556777777777754 788999999999999999999987
Q ss_pred -----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 -----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 -----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
++++|+||||||.||...+..++.+.++++++ |..|+.+-||++.+.. ||+|.+
T Consensus 154 ~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivl 213 (259)
T COG4559 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVL 213 (259)
T ss_pred cCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeee
Confidence 45689999999999999999999999999865 7899999999999987 999864
No 319
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=161.60 Aligned_cols=129 Identities=25% Similarity=0.347 Sum_probs=111.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhc--------CCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLY--------NIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia 77 (137)
+..||.-||.|..|+++||+||+.+..... .....+.++.++.++...++.. .++....||.||||++.|+
T Consensus 80 r~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred HhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhh
Confidence 345889999999999999999998764322 1123345678889999989865 7889999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+.++++|++|++|||++|+.-....+..++++.++. +++|+++.|||.++.. ++++.|
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTV 218 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTV 218 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEE
Confidence 999999999999999999999999999999999973 6899999999999998 888764
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=7.3e-26 Score=182.88 Aligned_cols=117 Identities=25% Similarity=0.292 Sum_probs=96.6
Q ss_pred cEEEEeccCCCCCC---CCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEIALFEE---FTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+++.+|....++. .||.|++... +....++.+++.+++.. .++++.+||||||||++||+|++.+|
T Consensus 161 ~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 161 KVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred ceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35666665443332 2898887631 12345667777788865 68999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||||++||+.++..+.+.|+++.+ |.|||++|||++++.. ||+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999964 8899999999999988 89875
No 321
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=8e-26 Score=166.51 Aligned_cols=120 Identities=26% Similarity=0.364 Sum_probs=100.0
Q ss_pred EEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC---C
Q psy17960 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS---P 84 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~---p 84 (137)
+.|..++...+..+|+.|++.|+....+ . .....+++.+++.. .++++.+|||||+||+.||++|+.+ |
T Consensus 118 ~~~~g~~i~~v~~ltv~e~~~~~~~~~~-----~-~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p 191 (261)
T cd03271 118 VRYKGKSIADVLDMTVEEALEFFENIPK-----I-ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGK 191 (261)
T ss_pred cCcCCCCHHHHhcCCHHHHHHHHHhhhh-----H-HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 5566666666778999999988765421 2 23345666778864 5888999999999999999999996 7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++||||||+|||+..+..+.+.++++.+ .|.|||++||+++++..||++.
T Consensus 192 ~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 192 TLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999875 5889999999999998898874
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=3e-26 Score=167.11 Aligned_cols=98 Identities=27% Similarity=0.347 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc
Q psy17960 40 RSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR 117 (137)
Q Consensus 40 ~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~ 117 (137)
.++..+.+..+++.+|+.. .++++++|||||+||++|||||+.+|+++++|||+|+||...+.++.+++++++++.|.
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~l 161 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGL 161 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCC
Confidence 3345566777888888753 68999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEcCCHHHHHh-cccccC
Q psy17960 118 TIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 118 tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|.+++|||++.+.. ||++.+
T Consensus 162 t~lFIsHDL~vv~~isdri~V 182 (268)
T COG4608 162 TYLFISHDLSVVRYISDRIAV 182 (268)
T ss_pred eEEEEEEEHHhhhhhcccEEE
Confidence 99999999999999 999864
No 323
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.93 E-value=1.5e-25 Score=182.64 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=98.9
Q ss_pred cEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 9 MLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 9 ~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.|||++|++ .+++.+||.+|+.+........ .....+..++..+++. . .++++.+||||||||++||+|++.+|+
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 589999986 5888899999997643211111 1123455666667774 3 588999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|||||||+|||+.++..+.+.++++ +.|||++|||.+++.. ||++.
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~ 508 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECW 508 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEE
Confidence 99999999999999999999999775 3499999999999988 88875
No 324
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.3e-26 Score=156.50 Aligned_cols=127 Identities=22% Similarity=0.302 Sum_probs=105.7
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.++++|++||++.+||+++|.+|+.|.... .+.-+..+...+..++..++.. .++.+.+||||||-||++-|+|+..|
T Consensus 75 ~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P 153 (213)
T COG4136 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP 153 (213)
T ss_pred hhhheeeeecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence 457899999999999999999999875432 1211233455667777888865 68899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+.++||||+|.||..-+.++.+.+-.-.+..|.-++++|||.+.+....
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvpags 202 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGS 202 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 9999999999999999999999986655567899999999999887533
No 325
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=1.6e-25 Score=156.90 Aligned_cols=87 Identities=32% Similarity=0.436 Sum_probs=77.8
Q ss_pred HHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 50 LQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 50 ~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+++.+++.. .++++.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.+++++++.+.|+|++||++++
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 455667754 5788999999999999999999999999999999999999999999999999875447899999999999
Q ss_pred HHh-ccccc
Q psy17960 129 ARQ-ADMRE 136 (137)
Q Consensus 129 ~~~-~d~~~ 136 (137)
+.. ||++.
T Consensus 161 ~~~~~d~~~ 169 (180)
T cd03214 161 AARYADRVI 169 (180)
T ss_pred HHHhCCEEE
Confidence 977 88875
No 326
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.4e-25 Score=196.51 Aligned_cols=125 Identities=24% Similarity=0.285 Sum_probs=98.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHH--cCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLV--LDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+++||+|.+|+. |++||+.++. ..+.+++.++++.+ ... .|+.. -.....+||||||||++|||
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLAR 1387 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLAR 1387 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHH
Confidence 4679999999999997 9999997642 22344444443322 111 12211 13345689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|+|||||||||+||..+.+.+.+.|++.. .++|+|+++|+++.+..||+|.+
T Consensus 1388 ALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI~~~DrIlV 1444 (1622)
T PLN03130 1388 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILV 1444 (1622)
T ss_pred HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHHHhCCEEEE
Confidence 9999999999999999999999999999999875 37999999999999999999864
No 327
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=1.6e-25 Score=179.82 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=91.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-C---CC--CCCCCChHHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-G---NQ--LCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~---~~--~~~~LS~G~kqrv~ia~al 80 (137)
+++++|++|++.+|+. |+++| . ...+ ++.++.+.+.+++.. . +. ...+||||||||++||||+
T Consensus 396 ~~~i~~v~q~~~lf~~-ti~~n---~---~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 396 RKLFSAVFTDFHLFDQ-LLGPE---G---KPAN----PALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred hhheEEEecChhHHHH-hhccc---c---CchH----HHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 4679999999998886 77777 1 0111 223344444444432 1 11 1458999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++|+++||||||++||+.+.+.+.+.+.+..+..++|+|++||+++.+..||++.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 99999999999999999999999999987654334789999999999988899875
No 328
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.1e-25 Score=196.42 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=98.4
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHH--cCCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLV--LDLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+|+||+|.+|+. |++||+.++. ..+.+++.++++.. ... .|+.. ......+||||||||++|||
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 4679999999999997 9999997542 22344444443322 111 12211 13445689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|+|||||||||+||+.+.+.+.+.|++.. .++|+|+|+|+++.+..||+|.+
T Consensus 1385 ALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1441 (1495)
T PLN03232 1385 ALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTIIDCDKILV 1441 (1495)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHhCCEEEE
Confidence 9999999999999999999999999999998864 37999999999999999999864
No 329
>KOG0061|consensus
Probab=99.93 E-value=4.1e-25 Score=179.09 Aligned_cols=129 Identities=33% Similarity=0.474 Sum_probs=110.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCC-CCCCCC-----CCChHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPP-GNQLCS-----TLSGGQARRVSIA 77 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~-----~LS~G~kqrv~ia 77 (137)
.+..|||.|+..+++.+||+|++.|.+.++- .+.++.+++++.+...+++.. .|+.++ .+||||||||+||
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 4568999999999999999999999877642 244677788899999998864 677775 5999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH-HHh-ccccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQ-ADMRE 136 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~-~~~-~d~~~ 136 (137)
.-++.+|.+++|||||+|||......+.+.|++++++ |+|||++=|.+.- +.. .|++.
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~ 242 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLL 242 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhh
Confidence 9999999999999999999999999999999999976 9999999999843 222 55543
No 330
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=4.1e-25 Score=164.62 Aligned_cols=122 Identities=24% Similarity=0.257 Sum_probs=90.0
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHH-----HHHHHcCC--C-CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK-----DLQLVLDL--P-PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l--~-~~~~~~~~LS~G~kqrv~ia~al 80 (137)
.++|++|++.+++. |+.||+.+.... .........+ .....+.. . ..++.+.+||+|||||++||||+
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~---~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL 174 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAV 174 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc---CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHH
Confidence 48999999988875 999999764221 1111111111 11111111 0 12345689999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHH-HHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYL-NRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l-~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+.+ .++. .+.|||++||+++++..||+++
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~~~d~i~ 229 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEHLKKADKIL 229 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHHhCCEEE
Confidence 9999999999999999999999999864 5554 3689999999999987798875
No 331
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=3.1e-25 Score=178.38 Aligned_cols=118 Identities=22% Similarity=0.323 Sum_probs=90.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-------CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-------GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.++|++|++.+|+. |+++|.. + +..++.+..+.+..++.. ......+||||||||++||||+
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~--------~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG--------E-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc--------c-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 568999999999886 7888731 1 111223344445544432 1122468999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHH-HHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLN-RLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~-~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||++||+.+.+.+.+.+. .++ ..|+|+|++||+++.+..||++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHHHHHhCCEEE
Confidence 99999999999999999999999988654 443 34789999999999988899875
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=6.4e-25 Score=178.97 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=95.8
Q ss_pred cEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+||++|+. .+.+..|+.+++.. .. .......+..++..+++. . .++++.+||||||||++||++++.+|
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~---~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p 449 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLAR---LA---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRP 449 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHH---hC---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 689999974 35556677776532 11 112234556777777874 2 58899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||||+|||+.++..+.+.|.++ .| |||+||||++++.. ||++.
T Consensus 450 ~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~~~~~~d~i~ 498 (638)
T PRK10636 450 NLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHLLRSTTDDLY 498 (638)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999886 24 99999999999988 99875
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=3.1e-25 Score=193.89 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=97.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HHc-CCCC-CC----CCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LVL-DLPP-GN----QLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~-~~----~~~~~LS~G~kqrv~ia~ 78 (137)
+++|+++||+|.+|+. |+++|+..+. ..+.+++.++++.+. +.. .++. .+ ....+||||||||++|||
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LAR 1434 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLAR 1434 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHH
Confidence 4679999999999997 9999996321 234444444433221 110 1111 23 344679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++++|+|||||||||+||......+.+.|++.. .++|+|+|+|+++.+..||+|.+
T Consensus 1435 ALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1491 (1522)
T TIGR00957 1435 ALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTIMDYTRVIV 1491 (1522)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999998864 37899999999999999999864
No 334
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-25 Score=174.72 Aligned_cols=125 Identities=24% Similarity=0.386 Sum_probs=98.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCC-CCCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLP-PGNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~-~~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.+++++|.+.+|.. |+++|+.+... .-+.++..+..+.+ .+.. |+. ..+.-...|||||+||++|||+
T Consensus 412 e~i~vl~Qr~hlF~~-Tlr~NL~lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 412 ETISVLTQRVHLFSG-TLRDNLRLANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred HHHhhhccchHHHHH-HHHHHHhhcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 468999999999987 99999987421 22333333333322 1111 111 1244557899999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|+++.+++||||||.|||+...+++++.+.+.. +|+|+|++||++..++++|+|++
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~le~~drIiv 544 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLERMDRIIV 544 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEecccccHhhcCEEEE
Confidence 999999999999999999999999999998865 38999999999999999999875
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=6.6e-25 Score=190.63 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=105.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC----------hhH----------H--------------HHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP----------RSS----------V--------------EAVIKDLQL 52 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~~~ 52 (137)
++.++|++|++.+++.+||+||+.|.....+.. +.+ + ....+.+++
T Consensus 238 ~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~ 317 (1470)
T PLN03140 238 RKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLK 317 (1470)
T ss_pred cceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHH
Confidence 456999999999999999999999876543211 111 0 012355677
Q ss_pred HcCCCC-C-----CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 53 VLDLPP-G-----NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 53 ~~~l~~-~-----~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.+|+.. . ++.++.|||||||||+||++++.+|++++|||||+|||..++.++.+.|+++++..|.|+|+++|++
T Consensus 318 ~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred HcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 788853 3 5677899999999999999999999999999999999999999999999999765689999999996
Q ss_pred -HHHHh-ccccc
Q psy17960 127 -EEARQ-ADMRE 136 (137)
Q Consensus 127 -~~~~~-~d~~~ 136 (137)
.++.. +|++.
T Consensus 398 ~~~i~~lfD~vi 409 (1470)
T PLN03140 398 APETFDLFDDII 409 (1470)
T ss_pred CHHHHHHhheEE
Confidence 46666 88875
No 336
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=4.3e-24 Score=154.60 Aligned_cols=87 Identities=28% Similarity=0.354 Sum_probs=78.1
Q ss_pred HHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 49 DLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 49 ~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
.+++.+++.. .++++.+||||||||++||+|++.+| +++||||||+|||+..+..+.+.++++++ .|.|+|++||
T Consensus 119 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH 197 (226)
T cd03270 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEH 197 (226)
T ss_pred HHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEe
Confidence 4566777753 58899999999999999999999998 59999999999999999999999999865 5889999999
Q ss_pred CHHHHHhccccc
Q psy17960 125 YIEEARQADMRE 136 (137)
Q Consensus 125 ~~~~~~~~d~~~ 136 (137)
+++++..||++.
T Consensus 198 ~~~~~~~~d~i~ 209 (226)
T cd03270 198 DEDTIRAADHVI 209 (226)
T ss_pred CHHHHHhCCEEE
Confidence 999987799875
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.92 E-value=1.2e-24 Score=150.30 Aligned_cols=70 Identities=30% Similarity=0.481 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||+||+||+++|||++.+|+++||||||+|||+.+++.+.+.++++++ +|.|+|++||+++++.. ||++.
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~d~~~ 153 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEVFEIADRVT 153 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999864 48899999999999887 88874
No 338
>PLN03232 ABC transporter C family member; Provisional
Probab=99.92 E-value=7.5e-25 Score=191.25 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=95.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCCC-C----CCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPPG-N----QLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~~-~----~~~~~LS~G~kqrv~ia~ 78 (137)
++.|+|++|+|.+|+. |++||+.|+.. .+.++.++.++... + ...++.. + ....+||||||||++|||
T Consensus 678 ~~~Iayv~Q~p~Lf~g-TIreNI~fg~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNA-TVRENILFGSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753 (1495)
T ss_pred cCcEEEEcCccccccc-cHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence 4679999999999986 99999998632 23444444443321 1 1123332 2 345679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHH-HHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKY-LNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~-l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+.++|+++|||||||+||+...+.+++. +.... .++|+|++||+++.+..||+|.
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~~aD~Ii 810 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLPLMDRII 810 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHHhCCEEE
Confidence 99999999999999999999999888665 55432 4789999999999999999875
No 339
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=9.2e-25 Score=191.01 Aligned_cols=125 Identities=22% Similarity=0.250 Sum_probs=97.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HH-cCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LV-LDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
++.|||+||+|.+|+. |+++|+..+. ..+.+++.++++.+. +. ..++. .+. ...+||||||||++|||
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence 4679999999999987 9999996431 233444444443321 11 11222 233 34679999999999999
Q ss_pred HHhcC-CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHS-PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~-p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++ |++||||||||+||+...+.+.+.|++.. .++|||+|+|+++.+..||+|.+
T Consensus 1459 ALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti~~~DrIlV 1516 (1560)
T PTZ00243 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTVAQYDKIIV 1516 (1560)
T ss_pred HHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHHHhCCEEEE
Confidence 99996 89999999999999999999999998864 37899999999999999999864
No 340
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=1.9e-24 Score=168.10 Aligned_cols=126 Identities=27% Similarity=0.413 Sum_probs=98.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHH--HHHH-HcCCCC-CCCCC----CCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK--DLQL-VLDLPP-GNQLC----STLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~-~~~~~----~~LS~G~kqrv~ia~ 78 (137)
.+.|||+||+..+|+. |+.|||.-+.. ..+.+.+-++.. .+-+ .+.++. -+..+ ..||||||||+++||
T Consensus 409 G~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 409 GRHIGYLPQDVELFDG-TIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred ccccCcCcccceecCC-cHHHHHHhccc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 3679999999999998 99999975421 112222222211 1122 233444 35554 579999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||..+|.+++||||-|+||..+...+.+.|.+.++ +|.|+|++||.++.+..+|++-
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHHHHhhcceee
Confidence 99999999999999999999999999999999975 5899999999999999999874
No 341
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=3e-24 Score=150.03 Aligned_cols=87 Identities=26% Similarity=0.363 Sum_probs=77.8
Q ss_pred HHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC--CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 49 DLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 49 ~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~--p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
.+++.+++.. .++++.+||+|||||++||+|++.+ |+++||||||+|||+.+++.+.+.++++++ .|.|||++||
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH 147 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEH 147 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 3556667642 5788999999999999999999999 999999999999999999999999999864 5899999999
Q ss_pred CHHHHHhccccc
Q psy17960 125 YIEEARQADMRE 136 (137)
Q Consensus 125 ~~~~~~~~d~~~ 136 (137)
+++++..||++.
T Consensus 148 ~~~~~~~~d~i~ 159 (176)
T cd03238 148 NLDVLSSADWII 159 (176)
T ss_pred CHHHHHhCCEEE
Confidence 999987799875
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=1.9e-24 Score=188.61 Aligned_cols=125 Identities=22% Similarity=0.369 Sum_probs=96.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH--H-cCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--V-LDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
+++++|+||+|.+|+. |+++|+.... ..+.+++.+.++.+.. . ..++. .+. ...+||||||||++|||
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~---~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE---QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc---CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 4679999999999997 9999996432 2233333333332211 0 01111 233 33579999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|+||||||||++||......+.+.|++.. .++|||+++|+++.+..||+|.+
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999998864 37999999999999999999863
No 343
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=2.1e-24 Score=157.35 Aligned_cols=127 Identities=26% Similarity=0.437 Sum_probs=109.6
Q ss_pred EEEEe-ccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 10 LGFMP-QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 10 i~~~~-q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+++++ |...+...+.+.+.+.....++..+.+..++..+.+.+.+++.. .+.+++.||-|||.|+.||.||+++|++|
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL 178 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence 44433 33345555567777766666778888888889999999988864 68899999999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|||||-|||+.++..+.+.+++++++.++||+++||+++.+.+ ||++.
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~ 228 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228 (325)
T ss_pred EecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE
Confidence 99999999999999999999999998889999999999999999 99875
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=2.7e-24 Score=150.43 Aligned_cols=71 Identities=28% Similarity=0.405 Sum_probs=66.4
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||+|||||+++|||++.+|++++|||||+|||+.+++.+.+.+.++.++.+.|+|++||+++++.. ||++.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999875444899999999999987 88874
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=3.4e-24 Score=187.05 Aligned_cols=122 Identities=27% Similarity=0.370 Sum_probs=93.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHH--HHHHHcC-CCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK--DLQLVLD-LPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~--~~~~~~~-l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.|+|++|++.+++. |++||+.|+... ...+..+.++ .+.+.+. ++. ...++.+||||||||++||||+
T Consensus 488 ~iayv~Q~~~l~~~-Ti~eNI~~g~~~---~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl 563 (1490)
T TIGR01271 488 RISFSPQTSWIMPG-TIKDNIIFGLSY---DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAV 563 (1490)
T ss_pred EEEEEeCCCccCCc-cHHHHHHhcccc---chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHH
Confidence 58999999999986 999999976421 1111222222 1111111 111 2346789999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHH-HHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKY-LNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~-l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||++||+...+.+++. +.++. .|+|+|++||+++.+..||++.
T Consensus 564 ~~~~~illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~~~ad~ii 618 (1490)
T TIGR01271 564 YKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHLKKADKIL 618 (1490)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHHHhCCEEE
Confidence 999999999999999999999999985 56654 3789999999999998899875
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=2e-24 Score=189.32 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=94.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCCC-----CCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPPG-----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~~-----~~~~~~LS~G~kqrv~ia~ 78 (137)
+..|+|++|+|.+|+. |++||+.|+.. .+.++..+.++... + .-.++.. .....+||||||||++|||
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR 753 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSP---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCc---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence 4579999999999986 99999998632 23344444433221 1 1122321 2345679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWK-YLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+..+|+++|||||||+||+...+.+++ .+.... .|+|+|++||+++.+..+|+|.
T Consensus 754 Aly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~~aD~Ii 810 (1622)
T PLN03130 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLSQVDRII 810 (1622)
T ss_pred HHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHHhCCEEE
Confidence 9999999999999999999998888764 555543 3789999999999999999985
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=1e-23 Score=173.44 Aligned_cols=119 Identities=20% Similarity=0.277 Sum_probs=92.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHH-Hhc-CCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFS-KLY-NIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
..|||++|++ ++.+++.+|..+.. ... ... .+.++.++..+++. . .++++.+||||||||++||+|++.+
T Consensus 572 ~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~ 645 (718)
T PLN03073 572 VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 645 (718)
T ss_pred eeEEEEeccc--cccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcC
Confidence 4699999986 23455656543322 111 111 23456677778885 2 5789999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|++|||||||+|||+.++..+.+.+.+. .| |||++|||++++.. ||++.
T Consensus 646 p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~ 695 (718)
T PLN03073 646 PHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELW 695 (718)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEE
Confidence 9999999999999999999998888664 24 99999999999988 89875
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=2.5e-24 Score=188.24 Aligned_cols=124 Identities=26% Similarity=0.347 Sum_probs=94.7
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH--HHHHcC-CCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVLD-LPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.|||++|++.+++ .|++||+.++.. ...++.++.++. +.+.++ ++. ..++..+||||||||++||||+
T Consensus 700 ~i~yv~Q~~~l~~-~Ti~eNI~~g~~---~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 700 SVAYVPQQAWIQN-DSLRENILFGKA---LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEEEEcCCccccC-CcHHHHhhcCCc---cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999876 599999987532 122222222221 111221 121 2456789999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHh-hcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA-HTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~-~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||++||+...+.+++.+.+.. ...++|+|++||+++.+..||++.
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii 832 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII 832 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE
Confidence 99999999999999999999999999986531 124789999999999998899875
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=7.1e-24 Score=168.80 Aligned_cols=124 Identities=30% Similarity=0.354 Sum_probs=98.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHh-cCCC-----------------------------hhHHHHHHHHHHHHcCCCC
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKL-YNIP-----------------------------RSSVEAVIKDLQLVLDLPP 58 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~-~~~~-----------------------------~~~~~~~~~~~~~~~~l~~ 58 (137)
++||++|++.+.+..||.+.+.....- .... .-+.+..+..++..+++..
T Consensus 67 ~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 699999999999988999987653210 0000 0011234455555566654
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.++++++||||||.|++||+||..+|++|||||||++||..+...+-+.|+++ .| |+|+||||-.++.. |++|.
T Consensus 147 ~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 147 EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheE
Confidence 58899999999999999999999999999999999999999999999999865 36 99999999999988 77764
No 350
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.4e-24 Score=154.96 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=100.8
Q ss_pred cCCCcEEEEecc--CCCCCCCCHHHHHHHHHH----hcC-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHH
Q psy17960 5 TGASMLGFMPQE--IALFEEFTISETFAFFSK----LYN-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 5 ~~~~~i~~~~q~--~~l~~~ltv~e~l~~~~~----~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~i 76 (137)
..+++||+|..+ ..+.+..+++|-+..+.. .+. ...+...+++..+++.+++.. .+++..+||.|||||+.|
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLi 182 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHH
Confidence 345678998764 345556678777653321 121 223344566777888888865 799999999999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-CCcEEEEEcCCHHHHHhc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTIIITTHYIEEARQA 132 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-~~~tvi~~tH~~~~~~~~ 132 (137)
||||+.+|++|||||||+|||..+++.+.+.+.++... .+.++|+|||..+++-.|
T Consensus 183 aRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~ 239 (257)
T COG1119 183 ARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239 (257)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence 99999999999999999999999999999999998753 357899999999998774
No 351
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=9.4e-24 Score=150.03 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=84.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHh----c
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLL----H 82 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~----~ 82 (137)
..++||+||++..+. .. ... +.++.+++. ....++++.+||+|||||++||++++ .
T Consensus 75 ~~~v~~vfq~~~~~~----------~~----~~~----~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~ 134 (197)
T cd03278 75 FAEVTLTFDNSDGRY----------SI----ISQ----GDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVR 134 (197)
T ss_pred eEEEEEEEEcCCCce----------eE----Eeh----hhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccC
Confidence 457999999987661 10 011 122333333 12357889999999999999999997 4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|++++|||||+|||+..+..+.+.++++.+ +.|||++||+++.+..||++.
T Consensus 135 ~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~~~~~d~v~ 186 (197)
T cd03278 135 PSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRKGTMEAADRLY 186 (197)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHhhcceEE
Confidence 6699999999999999999999999999863 589999999999987788864
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.1e-23 Score=170.18 Aligned_cols=89 Identities=25% Similarity=0.317 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCC--CCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEE
Q psy17960 44 EAVIKDLQLVLDLP--PGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121 (137)
Q Consensus 44 ~~~~~~~~~~~~l~--~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~ 121 (137)
+..+..++..+|+. ..++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+
T Consensus 126 ~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tvii 201 (638)
T PRK10636 126 RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLIL 201 (638)
T ss_pred HHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEE
Confidence 34566777888885 368899999999999999999999999999999999999999999999998765 359999
Q ss_pred EcCCHHHHHh-ccccc
Q psy17960 122 TTHYIEEARQ-ADMRE 136 (137)
Q Consensus 122 ~tH~~~~~~~-~d~~~ 136 (137)
||||++++.. ||++.
T Consensus 202 vsHd~~~l~~~~d~i~ 217 (638)
T PRK10636 202 ISHDRDFLDPIVDKII 217 (638)
T ss_pred EeCCHHHHHHhcCEEE
Confidence 9999999988 88875
No 353
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=164.78 Aligned_cols=128 Identities=24% Similarity=0.372 Sum_probs=109.0
Q ss_pred cEEEEeccC---CCCCCCCHHHHHHHHHH-h-c---CCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHH
Q psy17960 9 MLGFMPQEI---ALFEEFTISETFAFFSK-L-Y---NIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 9 ~i~~~~q~~---~l~~~ltv~e~l~~~~~-~-~---~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~ 78 (137)
.|+|+|.+. .++..+++.+|+.+... . . -++....++..+.+...+.++. .+.++.+||||.||||.|||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 589999874 58889999999987621 1 1 1344555667777877777753 57899999999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
.|+.+|++|||||||.|+|.-++.+++++|+++++ +|++||++|-++.++.. ||||.+
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSElpEll~~~DRIlV 473 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSELPELLGLSDRILV 473 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCChHHHHhhCCEEEE
Confidence 99999999999999999999999999999999986 59999999999999998 999864
No 354
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=1.2e-23 Score=184.12 Aligned_cols=123 Identities=22% Similarity=0.308 Sum_probs=92.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHH-----HHHHHHc--CCC-CCCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVI-----KDLQLVL--DLP-PGNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~--~l~-~~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.|||++|++.+++ .|++||+.++... ..+...+.+ +...+.+ |+. ..++++.+||||||||++||||
T Consensus 721 ~~i~yv~Q~~~l~~-~Tv~enI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARA 796 (1560)
T PTZ00243 721 RSIAYVPQQAWIMN-ATVRGNILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARA 796 (1560)
T ss_pred CeEEEEeCCCccCC-CcHHHHHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHH
Confidence 56999999999876 5999999875221 111112221 2222222 332 2367789999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHH-HHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYL-NRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l-~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++.+|+++||||||++||+...+.+++.+ .... .|+|+|++||+++.+..||++.
T Consensus 797 l~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 797 VYANRDVYLLDDPLSALDAHVGERVVEECFLGAL--AGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999988887644 3322 3789999999999998899875
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=4.9e-23 Score=167.95 Aligned_cols=88 Identities=28% Similarity=0.416 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 44 EAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
...+..++..+++. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++. .|||+||
T Consensus 136 ~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tvlivs 210 (635)
T PRK11147 136 ENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSIIFIS 210 (635)
T ss_pred HHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEEEEEe
Confidence 34556667777775 478999999999999999999999999999999999999999999999998762 4999999
Q ss_pred CCHHHHHh-ccccc
Q psy17960 124 HYIEEARQ-ADMRE 136 (137)
Q Consensus 124 H~~~~~~~-~d~~~ 136 (137)
||.+++.. ||++.
T Consensus 211 Hd~~~l~~~~d~i~ 224 (635)
T PRK11147 211 HDRSFIRNMATRIV 224 (635)
T ss_pred CCHHHHHHhcCeEE
Confidence 99999988 88875
No 356
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.4e-23 Score=144.25 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=113.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.|||+.|.-...|..+..|.+.-+..-.+.+.+..+.....++..+.++. ++-.+.++||||||||.|||+++.+-+
T Consensus 93 ~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~p 172 (235)
T COG4778 93 TTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP 172 (235)
T ss_pred hhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCc
Confidence 458999999888888888898887776678888888888888999988875 577899999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||||||||++||..++..+.++|.+-+ ..|.+++-+-||-+.-+. |||+.
T Consensus 173 ILLLDEPTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHDeevre~vadR~~ 223 (235)
T COG4778 173 ILLLDEPTASLDATNRAVVVELIREAK-ARGAALVGIFHDEEVREAVADRLL 223 (235)
T ss_pred eEEecCCcccccccchHHHHHHHHHHH-hcCceEEEeeccHHHHHHHhhhee
Confidence 999999999999999999999999975 569999999999877777 88763
No 357
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=1e-23 Score=154.65 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=96.3
Q ss_pred CcEEEEeccC---------CCCCCCCHHHHHHHHHHhcC-C-ChhHHHHHHHHHHHHcCCC-------------------
Q psy17960 8 SMLGFMPQEI---------ALFEEFTISETFAFFSKLYN-I-PRSSVEAVIKDLQLVLDLP------------------- 57 (137)
Q Consensus 8 ~~i~~~~q~~---------~l~~~ltv~e~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~------------------- 57 (137)
..+++++|++ .+.+.+||.+++........ . .+....+.+..+++.+++.
T Consensus 77 ~~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~ 156 (251)
T cd03273 77 ASVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM 156 (251)
T ss_pred EEEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh
Confidence 3689999985 34567888887754322111 1 1222334555666666664
Q ss_pred -C-CCCCCCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 58 -P-GNQLCSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 58 -~-~~~~~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
. .++++.+||+|||||+++|+|++ .+|+++|+||||+|||+..+..+.+.++++. + |.|+|++||+.+....
T Consensus 157 ~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 157 GGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNN 234 (251)
T ss_pred HHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHh
Confidence 1 24788999999999999999998 5789999999999999999999999999985 3 7899999999777777
Q ss_pred ccccc
Q psy17960 132 ADMRE 136 (137)
Q Consensus 132 ~d~~~ 136 (137)
||++.
T Consensus 235 ~d~v~ 239 (251)
T cd03273 235 ANVLF 239 (251)
T ss_pred CCEEE
Confidence 99874
No 358
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=4.5e-23 Score=146.15 Aligned_cols=127 Identities=25% Similarity=0.364 Sum_probs=100.3
Q ss_pred cEEEEeccC--CCCCCCCHHHHHHHHHHh---cCCCh---hHHHHHHHHHHHHc--CCCC-CCCCCCCCChHHHHHHHHH
Q psy17960 9 MLGFMPQEI--ALFEEFTISETFAFFSKL---YNIPR---SSVEAVIKDLQLVL--DLPP-GNQLCSTLSGGQARRVSIA 77 (137)
Q Consensus 9 ~i~~~~q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia 77 (137)
.++.|||+| ..++.+|+.||+.++... ++++. ...++....-+..+ |+.. .+.++.-|||||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 467899998 589999999999886532 12222 11122222222333 3433 5788999999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
.|.++.|++++|||-|++|||...+.+++.-.++.++.+.|.+|+||+|+.+-. ++|.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~Rl 219 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRL 219 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeE
Confidence 999999999999999999999999999999999988888999999999999877 5654
No 359
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.88 E-value=7e-23 Score=146.24 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=87.8
Q ss_pred CcEEEEeccC-----CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHH------HHH
Q psy17960 8 SMLGFMPQEI-----ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARR------VSI 76 (137)
Q Consensus 8 ~~i~~~~q~~-----~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqr------v~i 76 (137)
..|+++||++ .....+|+.+|+.+. ...+.+ ... ++++.+||+||+|| +++
T Consensus 71 ~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~------~~~~~~----~~~--------~~~~~~LS~G~~~~~~la~rlal 132 (204)
T cd03240 71 AQVKLAFENANGKKYTITRSLAILENVIFC------HQGESN----WPL--------LDMRGRCSGGEKVLASLIIRLAL 132 (204)
T ss_pred EEEEEEEEeCCCCEEEEEEEhhHhhceeee------chHHHH----HHH--------hcCccccCccHHHHHHHHHHHHH
Confidence 4688999987 334445777777542 111111 111 56788999999996 789
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHH-HHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAH-YFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~-~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+|++.+|+++++||||++||+..+. .+.+++++++++.|.|+|++||+++.+..||++.
T Consensus 133 a~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~ 193 (204)
T cd03240 133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIY 193 (204)
T ss_pred HHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEE
Confidence 99999999999999999999999999 9999999987544789999999999887798874
No 360
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.88 E-value=2.3e-22 Score=136.39 Aligned_cols=69 Identities=30% Similarity=0.386 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.++++ +.|++++||+++++.. ||++.
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~ 138 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKII 138 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999876 3699999999999987 89875
No 361
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=6.6e-22 Score=165.84 Aligned_cols=114 Identities=26% Similarity=0.389 Sum_probs=92.3
Q ss_pred CCCCCHHHHHHHHHHhcCCChh----------HHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--C
Q psy17960 20 FEEFTISETFAFFSKLYNIPRS----------SVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--D 85 (137)
Q Consensus 20 ~~~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~ 85 (137)
+..++|.|.+.|.-.+ +.+.. ++...++ +++.+|+.+ .++++.+|||||+||+.||++|+.+| +
T Consensus 434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence 4457888888774332 22221 2333343 455677763 58999999999999999999999997 9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|||||||+|||+..+..+.++|+++++ .|.|||+++|+++++..||++.
T Consensus 512 llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~~aD~vi 561 (943)
T PRK00349 512 LYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDEDTIRAADYIV 561 (943)
T ss_pred EEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEE
Confidence 9999999999999999999999999974 5899999999999998899875
No 362
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=7.4e-22 Score=140.39 Aligned_cols=78 Identities=22% Similarity=0.183 Sum_probs=70.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHH----hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc--CCcEEEEEcCCHHHHHhc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTL----LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT--DKRTIIITTHYIEEARQA 132 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al----~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~--~~~tvi~~tH~~~~~~~~ 132 (137)
.++++.+||+|||||++||+|+ +.+|+++||||||+|||+..+..+.+.|.+..++ .+.||+++||+++.+...
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 5788999999999999999999 5899999999999999999999999999987543 246899999999999988
Q ss_pred cccc
Q psy17960 133 DMRE 136 (137)
Q Consensus 133 d~~~ 136 (137)
|++.
T Consensus 183 d~v~ 186 (198)
T cd03276 183 DDVK 186 (198)
T ss_pred ccee
Confidence 8875
No 363
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=3.7e-22 Score=145.44 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=88.2
Q ss_pred CcEEEEeccCCCCC-CCCHHHHHHHHHHhcCCChhHH-----HHHHHHHHHHcCCC-CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFE-EFTISETFAFFSKLYNIPRSSV-----EAVIKDLQLVLDLP-PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~-~~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.+|+++|+..+++ ..|..+...+... .++..... ...+ .+.+++. ..++++.+||||||||++||+|+
T Consensus 98 r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l 173 (243)
T cd03272 98 RTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEMQQLSGGQKSLVALALIF 173 (243)
T ss_pred EEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCch---HHhhhccccccccccccCHHHHHHHHHHHHH
Confidence 34778888777766 3566655444332 23322110 1111 1222332 25678999999999999999999
Q ss_pred hc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+. +|+++|+||||+|||+.+++.+.+.++++.+ +.++|++||+.+....||++.
T Consensus 174 ~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 174 AIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred HHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEEE
Confidence 73 5899999999999999999999999999853 688999999977665599875
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.1e-21 Score=136.34 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=96.9
Q ss_pred EEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEE
Q psy17960 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ill 88 (137)
+-|+.-++.+=+.+|+.||+.|+..+++.. ....+.+++..+++.. .|.++.+||.|||+||+|||-++..++++|
T Consensus 77 l~yLGH~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 77 LLYLGHQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee
Confidence 456666677888899999999998876631 1234556667778865 799999999999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 89 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
||||+++||..+...+-.++..-.. .|..||.+||..--+
T Consensus 154 LDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~ 193 (209)
T COG4133 154 LDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI 193 (209)
T ss_pred ecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence 9999999999999999999998775 466899999987554
No 365
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.87 E-value=1.4e-21 Score=140.58 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=111.8
Q ss_pred EEEEecc-CCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 10 LGFMPQE-IALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 10 i~~~~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
|+++..- ..+-|.+|.+||+.+.+.+.+++++++++..+...+...+.. .+.|++++|.||+-|++++.|...+|+||
T Consensus 90 v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdIL 169 (249)
T COG1134 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDIL 169 (249)
T ss_pred EehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEE
Confidence 4444443 357788999999999888889999999999888888777754 79999999999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+||-.+-.|+..+++..+.+.++.++ +.|+|++|||++.+.+ ||++.
T Consensus 170 llDEvlavGD~~F~~K~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i 218 (249)
T COG1134 170 LLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAI 218 (249)
T ss_pred EEehhhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeE
Confidence 999999999999999999999999654 6899999999999999 99875
No 366
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=9.8e-24 Score=151.46 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=95.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh--------cCCChhHHHH--HHHHHHHHcCCCC-CCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL--------YNIPRSSVEA--VIKDLQLVLDLPP-GNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~i 76 (137)
+++++++|+..+++.+|+.+++.++... ++........ ....+.+.++++. .++++..||+|||||++|
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~l 138 (212)
T cd03274 59 KKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSL 138 (212)
T ss_pred hhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHH
Confidence 4689999998888888988876655432 1221111000 0133444555654 577889999999999999
Q ss_pred HHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 77 AVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 77 a~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|+|++. .|+++++||||+|||+.++..+.+.++++.+ +.|+|++||+.+....||++++
T Consensus 139 a~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~~~~d~v~~ 201 (212)
T cd03274 139 ALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMFELADRLVG 201 (212)
T ss_pred HHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHHHhCCEEEE
Confidence 999974 4799999999999999999999999999853 5789999999766655998763
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=8.2e-22 Score=162.25 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=75.6
Q ss_pred HHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 47 IKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 47 ~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
+..++..+++. . .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsH 399 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSH 399 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 34455566664 2 57889999999999999999999999999999999999999999999999775 569999999
Q ss_pred CHHHHHh-ccccc
Q psy17960 125 YIEEARQ-ADMRE 136 (137)
Q Consensus 125 ~~~~~~~-~d~~~ 136 (137)
|.+++.. ||++.
T Consensus 400 d~~~l~~~~d~i~ 412 (718)
T PLN03073 400 AREFLNTVVTDIL 412 (718)
T ss_pred CHHHHHHhCCEEE
Confidence 9999988 88875
No 368
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=9.5e-22 Score=134.81 Aligned_cols=70 Identities=49% Similarity=0.665 Sum_probs=66.2
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
||+||+||++||++++.+|++++|||||+|||+.++..+.+.+.++.+. +.|++++||+++++.. ||++.
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~ 151 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVI 151 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999998754 7899999999999999 68874
No 369
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.86 E-value=2.2e-21 Score=154.57 Aligned_cols=119 Identities=21% Similarity=0.228 Sum_probs=98.1
Q ss_pred CcEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
-++||+.|+. .+.+..|+.|++.-... +..+..+..++..++++. ..++++.||||||.|+.+|+.++.+|
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC
Confidence 3589999987 45577789888764321 111456667777777753 57899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
-+|||||||++||..+.+.+.+.|..+ ..|||+||||-.++.. |+++.
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEE
Confidence 999999999999999999999999876 2499999999999998 87763
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-22 Score=153.65 Aligned_cols=126 Identities=29% Similarity=0.436 Sum_probs=99.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH--Hc-CCCC-CCCCC----CCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VL-DLPP-GNQLC----STLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~-~~~~~----~~LS~G~kqrv~ia~ 78 (137)
++-||.+||+..||+. |...|+.++.. ..+.++..+..+.+.. .. .+++ .+..+ -.|||||||||+|||
T Consensus 336 R~aIg~VPQDtvLFND-ti~yni~ygr~--~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 336 RRAIGIVPQDTVLFND-TIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHhCcCcccceehhh-hHHHHHhccCc--cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 3569999999999987 89999987532 2234444444433322 11 2233 24444 469999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
+++.+|++++|||.||.||....+.+...|++.. .|.|.+++.|.+..+..||+|.|
T Consensus 413 ~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti~~adeiiv 469 (497)
T COG5265 413 TILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTIIDADEIIV 469 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhccCCceEEE
Confidence 9999999999999999999999999999999986 48899999999999999999864
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=3.1e-21 Score=133.42 Aligned_cols=123 Identities=26% Similarity=0.370 Sum_probs=97.5
Q ss_pred cEEEEeccCC--CCCCCCHHHHHH-----HHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIA--LFEEFTISETFA-----FFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 9 ~i~~~~q~~~--l~~~ltv~e~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~a 79 (137)
..||+.|+|. +-...+.--|+- .+.+-| ..+++....+++.+.++. -|..+.++||||+||+.|||-
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARn 165 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARN 165 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHH
Confidence 3688999873 333334334432 111111 245667778888777753 478899999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
|+..|+++++||||.|||...+..++++++.+..+-|.+++++|||+..+.- +||.
T Consensus 166 LVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rl 222 (258)
T COG4107 166 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRL 222 (258)
T ss_pred hccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcc
Confidence 9999999999999999999999999999999988889999999999999877 6664
No 372
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=4.6e-21 Score=160.52 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=89.1
Q ss_pred CCCCHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--Ce
Q psy17960 21 EEFTISETFAFFSKLYNIPR----------SSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--DI 86 (137)
Q Consensus 21 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~i 86 (137)
..||+.|.+.|...+. .+. .++...++. +..+++.. .++++.+|||||+||+.||++|+.+| ++
T Consensus 433 ~~~~v~~~~~~~~~l~-~~~~~~~ia~~i~~~i~~rl~~-L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~l 510 (924)
T TIGR00630 433 SELSIREAHEFFNQLD-LTPEEKKIAEEILKEIKERLGF-LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVL 510 (924)
T ss_pred hcCCHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHh-HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcE
Confidence 3578888777765431 111 112222222 34556653 48899999999999999999999986 89
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|||||||+|||+.....+.++|+++++ .|.|||+++|+++++..||++.
T Consensus 511 lILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i~~aD~vi 559 (924)
T TIGR00630 511 YVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETIRAADYVI 559 (924)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHhhCCEEE
Confidence 999999999999999999999999975 4899999999999998899875
No 373
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.86 E-value=4.8e-21 Score=167.14 Aligned_cols=116 Identities=26% Similarity=0.367 Sum_probs=95.1
Q ss_pred CCCCCCHHHHHHHHHHh---cCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHh---cCCCeEEEc
Q psy17960 19 LFEEFTISETFAFFSKL---YNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLL---HSPDIIVLD 90 (137)
Q Consensus 19 l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~---~~p~illlD 90 (137)
.|...||.|++.+...- +.....+..+.++ +++.+++.. .++++.+|||||+||++||++|+ .+|+++|||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~-~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH-ALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH-HHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 56678999999876431 1222334455554 566778854 48899999999999999999997 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 91 EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 91 EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|||+|||+..++.+++.|.++++ .|.|||++||+++.+..||++.
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999975 4889999999999996599875
No 374
>KOG0054|consensus
Probab=99.86 E-value=1.3e-21 Score=167.33 Aligned_cols=125 Identities=29% Similarity=0.397 Sum_probs=95.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHcC-CCCC-----CCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVLD-LPPG-----NQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-l~~~-----~~~~~~LS~G~kqrv~ia~a 79 (137)
..++|++|+|.+++. ||+|||.|+..+ .++.-++.++.- ...+. ++.. -++.-+||||||||+++|||
T Consensus 582 gsiaYv~Q~pWI~ng-TvreNILFG~~~---d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARA 657 (1381)
T KOG0054|consen 582 GSVAYVPQQPWIQNG-TVRENILFGSPY---DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARA 657 (1381)
T ss_pred CeEEEeccccHhhCC-cHHHhhhcCccc---cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHH
Confidence 348999999999987 999999987432 233333333321 11111 2222 34667899999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
..++++++|||-|+|++|.+..+.+++-.-.-. -+++|+|++||.++.+..||.|.+
T Consensus 658 VY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 658 VYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPHADQIIV 714 (1381)
T ss_pred HhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhhCCEEEE
Confidence 999999999999999999999999877654322 347899999999999999998863
No 375
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=7.5e-21 Score=159.52 Aligned_cols=108 Identities=27% Similarity=0.403 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCC
Q psy17960 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGV 96 (137)
Q Consensus 22 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gL 96 (137)
++|+.|++.|+..... .... ..++..+++.. .++++.+|||||+||+.||++|+.+| +++||||||+||
T Consensus 791 ~ltv~E~l~~f~~~~~-----i~~~-l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGL 864 (943)
T PRK00349 791 DMTVEEALEFFEAIPK-----IARK-LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 864 (943)
T ss_pred cCcHHHHHHHHHhchh-----hhHH-HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCC
Confidence 4788998888654322 2222 34566777754 57899999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 97 D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+..+..+++.|+++.+ .|.|||++||+++.+..||++.
T Consensus 865 D~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 865 HFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999974 5889999999999998899875
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=3.2e-21 Score=138.42 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc----------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLH----------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~----------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.++++.+||+||+||+++|+|++. +|+++||||||+|||+.++..+.+.++++++ .+.|+|++||++++
T Consensus 117 l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~ 195 (213)
T cd03279 117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVEEL 195 (213)
T ss_pred hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHH
Confidence 478889999999999999999985 5789999999999999999999999999864 48899999999999
Q ss_pred HHh-ccccc
Q psy17960 129 ARQ-ADMRE 136 (137)
Q Consensus 129 ~~~-~d~~~ 136 (137)
+.. +|++.
T Consensus 196 ~~~~~~~i~ 204 (213)
T cd03279 196 KERIPQRLE 204 (213)
T ss_pred HHhhCcEEE
Confidence 988 67764
No 377
>KOG0056|consensus
Probab=99.85 E-value=4.2e-22 Score=155.22 Aligned_cols=127 Identities=35% Similarity=0.478 Sum_probs=100.1
Q ss_pred CCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCCC-CC----CCCCCChHHHHHHHHH
Q psy17960 6 GASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPPG-NQ----LCSTLSGGQARRVSIA 77 (137)
Q Consensus 6 ~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~~-~~----~~~~LS~G~kqrv~ia 77 (137)
-++.||.|||+..+|++ |+..|+.|+.- +-+.+++.++.+.+. + .++.+++ +. +.-.|||||||||+||
T Consensus 610 LRs~IGVVPQDtvLFNd-TI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLFND-TILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHhcCcccCcceeecc-eeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 34679999999999997 99999987532 223444444433322 1 3344442 33 3457999999999999
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|+++.+|.+++|||.||+||....+.+...+.+++. ++|.|++.|.+..+-.||.|.|
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivnAD~ILv 744 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVNADLILV 744 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheecccEEEE
Confidence 999999999999999999999999999999999984 7899999999999999998753
No 378
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.1e-20 Score=132.64 Aligned_cols=128 Identities=23% Similarity=0.210 Sum_probs=105.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHcCCCC--CCCCCC-CCChHHHHHHHHHHHHh
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIP---RSSVEAVIKDLQLVLDLPP--GNQLCS-TLSGGQARRVSIAVTLL 81 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~--~~~~~~-~LS~G~kqrv~ia~al~ 81 (137)
..|...||.|.-+|..++.+.+.......... ..+....++..++.++++. .+|.++ .+|||||+|..|+..++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 45788999999999999999988765432211 1244556666777777753 577775 79999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc--cccc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA--DMRE 136 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~--d~~~ 136 (137)
.+|++.|||||-||||..+-+.+.+.+..++. .|.+++++||+-..+... |++.
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhcCCCEEE
Confidence 99999999999999999999999999999985 589999999999988773 6654
No 379
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1.7e-20 Score=157.19 Aligned_cols=108 Identities=27% Similarity=0.414 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhc---CCCeEEEcCCCCCC
Q psy17960 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLH---SPDIIVLDEPTSGV 96 (137)
Q Consensus 22 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~---~p~illlDEPt~gL 96 (137)
.+|+.|.+.|+..+... .... .++..+++.. .++++.+|||||+||+.||++|+. +|+++||||||+||
T Consensus 789 ~~tv~e~~~f~~~~~~i-----~~~l-~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgL 862 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPSI-----SRKL-QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL 862 (924)
T ss_pred CCcHHHHHHHHHhccch-----hHHH-HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCC
Confidence 46777777776543221 2223 4555677754 578899999999999999999997 59999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 97 D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+..+..+.+.|.++.+ .|.|||++||+++.+..||++.
T Consensus 863 D~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 863 HFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999975 4889999999999998899875
No 380
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=2.9e-20 Score=129.44 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=106.9
Q ss_pred CCCcEEEEeccCC--CCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHHHHcCC-CC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 6 GASMLGFMPQEIA--LFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDL-PP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 6 ~~~~i~~~~q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
.++.|-++||+|+ +.|.+.+.+-+..+.++. .+......+.+..-+..+|+ ++ .+-+++.||.||||||++||||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL 164 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL 164 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence 3567899999984 666677777666666543 23333334445555556665 54 7889999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.+|+++|.||..++||...+.++.+++-++.++.|.+.|+++.++..++- +|.+.
T Consensus 165 IL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi 221 (267)
T COG4167 165 ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL 221 (267)
T ss_pred hcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE
Confidence 999999999999999999999999999999998889999999999999988 77764
No 381
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=1.4e-20 Score=137.87 Aligned_cols=75 Identities=21% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhcC----CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLHS----PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~~----p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++.+||+|||||++||++++.+ |+++||||||+|||+..+..+.+.++++++ .|.++|++||+.+.+..||++.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHHhhCCeEE
Confidence 44589999999999999999864 899999999999999999999999999864 4889999999988887799875
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=1.5e-19 Score=158.04 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=75.1
Q ss_pred HcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 53 VLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 53 ~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+++.+ .++.+.+|||||+||+.||+||+.+| ++|||||||+|||+..++.+.++|+++++ .|.|||++|||++.
T Consensus 462 ~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeHd~~v 540 (1809)
T PRK00635 462 DLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEHDEQM 540 (1809)
T ss_pred hccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH
Confidence 557763 47899999999999999999999999 89999999999999999999999999975 48899999999996
Q ss_pred HHhccccc
Q psy17960 129 ARQADMRE 136 (137)
Q Consensus 129 ~~~~d~~~ 136 (137)
+..||++.
T Consensus 541 i~~aDrVi 548 (1809)
T PRK00635 541 ISLADRII 548 (1809)
T ss_pred HHhCCEEE
Confidence 65599875
No 383
>KOG0065|consensus
Probab=99.79 E-value=2e-19 Score=152.18 Aligned_cols=128 Identities=29% Similarity=0.414 Sum_probs=106.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcC---CChhHHHHHHHHHHHHcCCCC-CCCCCCC----CChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYN---IPRSSVEAVIKDLQLVLDLPP-GNQLCST----LSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~----LS~G~kqrv~ia~ 78 (137)
++.+|||.|++.-.+.+||+|-+.|.+.++. .+.++..+.++.+.+.++++. ++.-++. ||..||+|+.||-
T Consensus 863 ~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 863 ARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV 942 (1391)
T ss_pred ccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence 3568999999877799999999999887653 234444467888888888864 5655555 9999999999999
Q ss_pred HHhcCC-CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH--HHhcccc
Q psy17960 79 TLLHSP-DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE--ARQADMR 135 (137)
Q Consensus 79 al~~~p-~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~--~~~~d~~ 135 (137)
-|+.+| .||+|||||||||..+.-.++.+++++.. .|.||+.+-|.+.- .++.|+.
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~L 1001 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDEL 1001 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHH
Confidence 999999 89999999999999999999999999986 69999999999864 2346654
No 384
>KOG0054|consensus
Probab=99.79 E-value=2.8e-19 Score=153.19 Aligned_cols=125 Identities=26% Similarity=0.342 Sum_probs=97.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHH--Hc-CCCC-C----CCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VL-DLPP-G----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~-~----~~~~~~LS~G~kqrv~ia~ 78 (137)
+++++.+||+|.+|.+ |++.|+.=+.. .+.+++.++++.... .. .++. . .+-..++|-||||.+++||
T Consensus 1213 RsrlsIIPQdPvLFsG-TvR~NLDPf~e---~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLAR 1288 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSG-TVRFNLDPFDE---YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLAR 1288 (1381)
T ss_pred HhcCeeeCCCCceecC-ccccccCcccc---cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHH
Confidence 4679999999999998 99999863322 234444444433211 11 1221 2 3345689999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++++||+|||+|+++|+..-..+.+.|++--+ ++|||.+.|.++.+.++|||.|
T Consensus 1289 ALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1289 ALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred HHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhhcCeEEE
Confidence 99999999999999999999999999999988653 7999999999999999999853
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=5.5e-19 Score=136.66 Aligned_cols=125 Identities=22% Similarity=0.245 Sum_probs=98.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
-+|+|-||...--...||.+.+.-..... .... ....++..-+.+.. .++++.+|||||.|||+||.+|..++++
T Consensus 401 ~~vSyKPQyI~~~~~gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 401 LKVSYKPQYISPDYDGTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred ceEeecceeecCCCCCcHHHHHHHhhhhh-cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE
Confidence 35899999765545679998765432210 1111 11222333344444 5889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||++.||...+-.+...|+++.+..++|.+++.||+-.+.. +||+.
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~i 527 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEE
Confidence 999999999999999999999999988888999999999999988 88864
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=1.4e-18 Score=135.22 Aligned_cols=129 Identities=18% Similarity=0.370 Sum_probs=109.9
Q ss_pred CcEEEEeccC---CCCCCCCHHHHHHHHHHhc------C-CChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHH
Q psy17960 8 SMLGFMPQEI---ALFEEFTISETFAFFSKLY------N-IPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVS 75 (137)
Q Consensus 8 ~~i~~~~q~~---~l~~~ltv~e~l~~~~~~~------~-~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ 75 (137)
..+||+|.+. .+.+.+|+.||+.+..... + +.+..+.+....+.+.++... ...++.+||||.+||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 3589999975 5888899999987654321 1 345667777788888887742 46788999999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+||-+..+|++|+..+||.|||.-+.+.+.+.|.+.++ .|++|+++|-|++++.. ||||.+
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLDEil~lsDrIaV 475 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLDEILELSDRIAV 475 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHHHHHHhhheeee
Confidence 99999999999999999999999999999999999875 59999999999999998 999875
No 387
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.6e-18 Score=121.48 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 66 LSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 66 LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||+||+||+++|++++ .+|+++++|||+++||+..+..+.+.+.++.+ .|.++|++||+++.+..+|++.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~~~adrvi 168 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMFENADKLI 168 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHhhCCeEE
Confidence 9999999999999996 69999999999999999999999999999864 4789999999999887788875
No 388
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.76 E-value=6.2e-19 Score=125.35 Aligned_cols=130 Identities=19% Similarity=0.283 Sum_probs=97.7
Q ss_pred CCcEEEEeccCC--CCCCCCHHHHH----HHHHHhcCCCh---hHHHHHHHHHHHHcCCCC----CCCCCCCCChHHHHH
Q psy17960 7 ASMLGFMPQEIA--LFEEFTISETF----AFFSKLYNIPR---SSVEAVIKDLQLVLDLPP----GNQLCSTLSGGQARR 73 (137)
Q Consensus 7 ~~~i~~~~q~~~--l~~~ltv~e~l----~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~----~~~~~~~LS~G~kqr 73 (137)
.+.|+++||+|. +-|.-++...+ -++. +.+.=+ ...++..-+++..+|+++ ...++.+|.-||-|+
T Consensus 88 g~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wT-fkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QK 166 (330)
T COG4170 88 GHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWT-YKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQK 166 (330)
T ss_pred ccchhhhhcCchhhcChHHHHHHHHHhhCcccc-ccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCccee
Confidence 356889999985 33433332222 1110 111001 112333445666777753 367899999999999
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|.||.|++.+|++||.||||+.+++..+.+++.++.++++..|.||++++||+..+.+ ||++.+
T Consensus 167 VMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~V 231 (330)
T COG4170 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINV 231 (330)
T ss_pred eeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEE
Confidence 9999999999999999999999999999999999999988889999999999999999 998753
No 389
>KOG0062|consensus
Probab=99.75 E-value=3.4e-18 Score=133.58 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=72.3
Q ss_pred HHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 47 IKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 47 ~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
...++..+|... ..++.++||||+|-|+++||||..+||+|||||||+.||..+...+-+.|... +.|+|+|||
T Consensus 178 ~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSH 253 (582)
T KOG0062|consen 178 YDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSH 253 (582)
T ss_pred HHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEec
Confidence 333556677643 47889999999999999999999999999999999999999999999888664 479999999
Q ss_pred CHHHHHh-cccc
Q psy17960 125 YIEEARQ-ADMR 135 (137)
Q Consensus 125 ~~~~~~~-~d~~ 135 (137)
|-+++.. |..|
T Consensus 254 Dr~FLn~V~tdI 265 (582)
T KOG0062|consen 254 DRNFLNTVCTDI 265 (582)
T ss_pred cHHHHHHHHHHH
Confidence 9999887 6443
No 390
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=2e-18 Score=124.07 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHH----hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEcCCHHHHHh-c
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTL----LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEEARQ-A 132 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al----~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~tH~~~~~~~-~ 132 (137)
.+..+.+||+||||++.+++++ +.+|+++|+||||+|||+..+..+.+.+.+..++.| .|+|++||++..+.. +
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 3567889999999998877554 589999999999999999999999999999875424 589999999977765 6
Q ss_pred ccc
Q psy17960 133 DMR 135 (137)
Q Consensus 133 d~~ 135 (137)
|++
T Consensus 200 ~~~ 202 (213)
T cd03277 200 EKM 202 (213)
T ss_pred Cce
Confidence 654
No 391
>KOG0062|consensus
Probab=99.75 E-value=2.4e-18 Score=134.43 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=90.6
Q ss_pred cCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 5 TGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 5 ~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
.++.+|+|.+|...=+..+.+...-.+.....+..+ +.++.-+..+|++. ....+..||||||-||++|.....
T Consensus 424 ~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~----ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 424 HPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTE----EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCH----HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence 345678999997643333333332222222223333 34445555677742 456689999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
+|-+|+|||||+.||..+...+...|+.. +..||+||||.+++.. |+++
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~ 549 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF----NGGVVLVSHDEEFISSLCKEL 549 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc----CCcEEEEECcHHHHhhcCcee
Confidence 99999999999999999999999998776 2379999999999998 8765
No 392
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.74 E-value=3.3e-18 Score=114.36 Aligned_cols=75 Identities=35% Similarity=0.617 Sum_probs=58.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-C----CCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-G----NQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----~~~~~~LS~G~kqrv~ia~al~ 81 (137)
.+.++|++|++.+++.+|+.+| .....++.++..+++.. . ++++.+||+|||||++||+|++
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~ 124 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL 124 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH
Confidence 3569999999999999999999 11223444444444322 2 4455999999999999999999
Q ss_pred cCCCeEEEcCCCC
Q psy17960 82 HSPDIIVLDEPTS 94 (137)
Q Consensus 82 ~~p~illlDEPt~ 94 (137)
.+|+++||||||+
T Consensus 125 ~~~~llllDEPt~ 137 (137)
T PF00005_consen 125 KNPKLLLLDEPTN 137 (137)
T ss_dssp TTSSEEEEESTTT
T ss_pred cCCCEEEEeCCCC
Confidence 9999999999996
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=5.7e-18 Score=131.10 Aligned_cols=90 Identities=27% Similarity=0.345 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 46 VIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 46 ~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..+++.+.+++.. .++.+.+|||||.||++||.|++++.+++++|||+|-||...+-.....++++.+. +++|+++.|
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEH 271 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEH 271 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEec
Confidence 3445666777765 79999999999999999999999999999999999999999999999999999864 899999999
Q ss_pred CHHHHHh-ccccc
Q psy17960 125 YIEEARQ-ADMRE 136 (137)
Q Consensus 125 ~~~~~~~-~d~~~ 136 (137)
|+..+.. +|-++
T Consensus 272 DLavLD~lsD~vh 284 (591)
T COG1245 272 DLAVLDYLSDFVH 284 (591)
T ss_pred hHHHHHHhhheeE
Confidence 9999887 77665
No 394
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.73 E-value=1.6e-17 Score=114.68 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 64 STLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
.+||+||+||+.++++++. +|+++|+|||++|+|+..+..+.+.+.++..+ +.++|++||+.+....+|++.
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~ 151 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLI 151 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEE
Confidence 4699999999999999987 78999999999999999999999999988655 789999999999998888864
No 395
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.73 E-value=1.9e-18 Score=119.59 Aligned_cols=121 Identities=19% Similarity=0.310 Sum_probs=97.1
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc-----
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH----- 82 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~----- 82 (137)
+-+|+.|+......|.|..++.+. .+.++....++.+...+++.+ ..+.+++|||||-|||-+|...++
T Consensus 73 hRAYLsQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~ 147 (248)
T COG4138 73 HRAYLSQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147 (248)
T ss_pred HHHHHhhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC
Confidence 346777776655567888877653 233455566777777777765 578899999999999999998765
Q ss_pred C--CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 83 S--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 83 ~--p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
+ .+++|+|||.++||...+..+..++.+++. .|.+|||++||++...+ +|++
T Consensus 148 NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNhTLrhA~~~ 202 (248)
T COG4138 148 NPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNHTLRHAHRA 202 (248)
T ss_pred CccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhhHHHHHHHH
Confidence 3 459999999999999999999999999985 59999999999998766 8775
No 396
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.73 E-value=2.2e-17 Score=132.26 Aligned_cols=118 Identities=26% Similarity=0.336 Sum_probs=91.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-------CCCCCCCCCChHHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-------PGNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~LS~G~kqrv~ia~a 79 (137)
...+-|+||.|.+... |.+|-+.|+......+.++..+.+ ..+++. ..++.-..||+|||||+++||.
T Consensus 455 ~~~~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL----~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi 529 (604)
T COG4178 455 DSALLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVL----HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL 529 (604)
T ss_pred CCceEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHH----HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence 3458899999987776 999999887544334444433333 333332 2344557899999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
++++|++++|||.|++||+.....+++.+++-. .+.|||-++|......-
T Consensus 530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 530 LLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLWNF 579 (604)
T ss_pred HHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhHHH
Confidence 999999999999999999999999999998753 47999999999766543
No 397
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.8e-17 Score=123.19 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=63.6
Q ss_pred CCCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 63 CSTLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
...|||||+||+++|++++. +|+++++|||++|||+..+..+.+.++++.+ +.|+|++||++.....||++.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~ 243 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHF 243 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEE
Confidence 34599999999999997654 9999999999999999999999999999853 689999999999776688764
No 398
>KOG0927|consensus
Probab=99.72 E-value=3.7e-17 Score=128.49 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=68.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
.++++.+|||||+.|+++||+|..+|++|||||||+|||+.+..-+-+.|.+.. .+ ++++++|+-+++.. |..|+
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~lVi~sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-ILVIVSHSQDFLNGVCTNII 290 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-eEEEEecchhhhhhHhhhhh
Confidence 578999999999999999999999999999999999999999999999998763 12 89999999999998 87765
No 399
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=2.7e-17 Score=140.49 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc----------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLH----------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~----------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.++++.+|||||++|++||+||+. +|++||+||||+|||+.+...+++.|..+.. .|.+|++|||++++
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF 1022 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH
Confidence 467899999999999999999986 7999999999999999999999999999975 68999999999999
Q ss_pred HHh-cccccC
Q psy17960 129 ARQ-ADMREL 137 (137)
Q Consensus 129 ~~~-~d~~~~ 137 (137)
... +|+|.+
T Consensus 1023 ~~~~~~~i~v 1032 (1042)
T TIGR00618 1023 RERIPHRILV 1032 (1042)
T ss_pred HHhhCCEEEE
Confidence 988 888753
No 400
>KOG0927|consensus
Probab=99.69 E-value=5.4e-17 Score=127.56 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEE
Q psy17960 43 VEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120 (137)
Q Consensus 43 ~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi 120 (137)
..+.++.++..+|+. . .+.+..+||+|||.||.+|++++..|.+|+|||||+|||......+.+.|.++ ..+||
T Consensus 485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~----~Ggvv 560 (614)
T KOG0927|consen 485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF----PGGVV 560 (614)
T ss_pred hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc----CCcee
Confidence 456677788888886 3 57899999999999999999999999999999999999999999999998765 34899
Q ss_pred EEcCCHHHHHh-cccc
Q psy17960 121 ITTHYIEEARQ-ADMR 135 (137)
Q Consensus 121 ~~tH~~~~~~~-~d~~ 135 (137)
++|||...+.+ ++++
T Consensus 561 ~vSHDfrlI~qVaeEi 576 (614)
T KOG0927|consen 561 LVSHDFRLISQVAEEI 576 (614)
T ss_pred eeechhhHHHHHHHHh
Confidence 99999999988 7665
No 401
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.68 E-value=9.6e-17 Score=129.60 Aligned_cols=71 Identities=28% Similarity=0.370 Sum_probs=65.3
Q ss_pred CCCChHHHHHHHHHHHHhcC----CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 64 STLSGGQARRVSIAVTLLHS----PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~----p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
..|||||+||++||++++.. |+++|||||++|||+.....+.+.|+++.+ +.+||++||++..+..||+++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~~ad~~~ 513 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAAHADAHF 513 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHHhcCeEE
Confidence 57899999999999999985 699999999999999999999999999863 789999999999997788865
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=2.7e-16 Score=128.31 Aligned_cols=108 Identities=29% Similarity=0.439 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCC
Q psy17960 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGV 96 (137)
Q Consensus 22 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gL 96 (137)
.|||.|-..|+... ..+.+.++.+. .+|+.+ .-++..+|||||.||+-+|.-|..+. -++||||||+||
T Consensus 783 ~MTveEA~~FF~~~-----p~I~rkLqtL~-dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGL 856 (935)
T COG0178 783 DMTVEEALEFFEAI-----PKIARKLQTLV-DVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGL 856 (935)
T ss_pred hccHHHHHHHHhcc-----hHHHHHHHHHH-HcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCC
Confidence 36666666665321 22445555444 456654 46889999999999999999999887 799999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 97 D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
-....+++++.|.++.. .|-|||++.|+++.+..||+|.
T Consensus 857 H~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 857 HFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecccceEeecCEEE
Confidence 99999999999999985 5889999999999999999873
No 403
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.68 E-value=7.5e-17 Score=129.87 Aligned_cols=74 Identities=16% Similarity=0.304 Sum_probs=65.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHh----------cCCCeEEEcCCC-CCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLL----------HSPDIIVLDEPT-SGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~----------~~p~illlDEPt-~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+.++.+|||||+||++||+|++ .+|+++|||||| ++||+.++..+.+.|.++ .|.|||++||+.+.
T Consensus 463 ~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~~ 539 (562)
T PHA02562 463 DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDHD 539 (562)
T ss_pred ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchhc
Confidence 3467899999999999999988 599999999998 789999999999999987 27899999999887
Q ss_pred HHhccccc
Q psy17960 129 ARQADMRE 136 (137)
Q Consensus 129 ~~~~d~~~ 136 (137)
...+|++.
T Consensus 540 ~~~~d~~~ 547 (562)
T PHA02562 540 PQKFDRHL 547 (562)
T ss_pred hhhhhcEE
Confidence 77788764
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=99.65 E-value=4.4e-16 Score=125.42 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 65 TLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
.+||||+||++||++++. +|+++|||||++|||......+.+.++++.+ +.+||++||++..+..||+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~~~ad~~~ 503 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVAGCGHQHF 503 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHhCCEEE
Confidence 589999999999999997 5899999999999999999999999999863 689999999999887788754
No 405
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.64 E-value=7.8e-16 Score=131.55 Aligned_cols=72 Identities=26% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc--------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLH--------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~--------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.++++.+|||||+++++||+||+. +|+++|+||||+|||+.+...+++.|..+.+ .|++|++|||..+...
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l~~ 1021 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAMKE 1021 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHHHH
Confidence 357899999999999999999996 8999999999999999999999999999975 5899999999877766
Q ss_pred h
Q psy17960 131 Q 131 (137)
Q Consensus 131 ~ 131 (137)
+
T Consensus 1022 ~ 1022 (1047)
T PRK10246 1022 R 1022 (1047)
T ss_pred h
Confidence 5
No 406
>PRK03918 chromosome segregation protein; Provisional
Probab=99.63 E-value=8.3e-16 Score=129.36 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=65.9
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 60 NQLCSTLSGGQAR------RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 60 ~~~~~~LS~G~kq------rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+.++..|||||++ |+++|++++.+|+++||||||+|||+..+..+.+.|..+.. .+.+||++||+++....||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~~~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEELKDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHhCC
Confidence 5678899999999 45556678899999999999999999999999999998764 4679999999998776688
Q ss_pred ccc
Q psy17960 134 MRE 136 (137)
Q Consensus 134 ~~~ 136 (137)
+++
T Consensus 862 ~~~ 864 (880)
T PRK03918 862 YVI 864 (880)
T ss_pred eEE
Confidence 874
No 407
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=1.7e-15 Score=131.97 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=63.8
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh----cCCcEEEEEcCCHHHHH
Q psy17960 61 QLCSTLSGGQAR------RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH----TDKRTIIITTHYIEEAR 130 (137)
Q Consensus 61 ~~~~~LS~G~kq------rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~----~~~~tvi~~tH~~~~~~ 130 (137)
...+.|||||+| |++||+|++.+|++++|||||+|||+.+...+.+.|..+.. ..|.+||++|||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345789999999 99999999999999999999999999999999998887632 23789999999999998
Q ss_pred h
Q psy17960 131 Q 131 (137)
Q Consensus 131 ~ 131 (137)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 7
No 408
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.61 E-value=1.5e-15 Score=130.07 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=67.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
+.++..|||||+++++||++++ ..|+++|||||++|||+..+..+.++|..+.+ +.++|++||++..+..||++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~~~~d~~ 1161 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTMEVADQL 1161 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHHHHhhhH
Confidence 5678899999999999999985 67799999999999999999999999999863 46899999999998779987
Q ss_pred c
Q psy17960 136 E 136 (137)
Q Consensus 136 ~ 136 (137)
+
T Consensus 1162 ~ 1162 (1179)
T TIGR02168 1162 Y 1162 (1179)
T ss_pred e
Confidence 5
No 409
>PRK01156 chromosome segregation protein; Provisional
Probab=99.61 E-value=2.8e-15 Score=126.57 Aligned_cols=76 Identities=22% Similarity=0.269 Sum_probs=65.5
Q ss_pred CCCCCCChHHHHHHHH------HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcC-C-cEEEEEcCCHHHHHhc
Q psy17960 61 QLCSTLSGGQARRVSI------AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD-K-RTIIITTHYIEEARQA 132 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~i------a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~-~-~tvi~~tH~~~~~~~~ 132 (137)
.++..|||||+++++| |++++.+|++++|||||+|||+..+..+.+++....... | .++|++||+++.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4678999999999975 489999999999999999999999999999998643332 3 4899999999998779
Q ss_pred cccc
Q psy17960 133 DMRE 136 (137)
Q Consensus 133 d~~~ 136 (137)
|++.
T Consensus 877 d~ii 880 (895)
T PRK01156 877 DVAY 880 (895)
T ss_pred CeEE
Confidence 8874
No 410
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.60 E-value=3.8e-15 Score=105.96 Aligned_cols=76 Identities=30% Similarity=0.274 Sum_probs=64.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
.+....++|+||+|+..+++++ .+|+++++|||++|+|+..+..+. ..++++.+ .|.++|++||+.+....+|++.
T Consensus 85 l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~~d~~~ 161 (200)
T cd03280 85 IEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAYAYKRE 161 (200)
T ss_pred hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHHHhcCC
Confidence 3566789999999999999884 799999999999999999999986 56777764 4889999999976555588764
No 411
>KOG0066|consensus
Probab=99.58 E-value=6.2e-15 Score=114.52 Aligned_cols=112 Identities=27% Similarity=0.350 Sum_probs=82.9
Q ss_pred cEEEEeccC--CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCC-CCC-CCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL-PPG-NQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+||+.-|+. .+--.-|..|++. +.++++..+.+.. +-.+|+ .+. .-.+..||||||-||++|-.-+..|
T Consensus 651 ~iG~FdQh~~E~L~~Eetp~EyLq---r~FNlpyq~ARK~----LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~P 723 (807)
T KOG0066|consen 651 RIGWFDQHANEALNGEETPVEYLQ---RKFNLPYQEARKQ----LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGP 723 (807)
T ss_pred eeechhhhhHHhhccccCHHHHHH---HhcCCChHHHHHH----hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCC
Confidence 478877764 2433446666554 3345554443332 234455 333 3467899999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
++|||||||++||..+...+.+.|.++. ..|||+|||-..+..
T Consensus 724 DvlILDEPTNNLDIESIDALaEAIney~----GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 724 DVLILDEPTNNLDIESIDALAEAINEYN----GGVIMVSHDERLIVE 766 (807)
T ss_pred CEEEecCCCCCcchhhHHHHHHHHHhcc----CcEEEEecccceeee
Confidence 9999999999999999999999998763 379999999887654
No 412
>KOG0066|consensus
Probab=99.52 E-value=1.1e-14 Score=113.16 Aligned_cols=88 Identities=26% Similarity=0.352 Sum_probs=74.7
Q ss_pred HHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEE
Q psy17960 44 EAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121 (137)
Q Consensus 44 ~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~ 121 (137)
+...+.++..+|.. . .+++...+|||+|-||++||||...|-+|.|||||++||..+...+-+.|..++ +|+++
T Consensus 389 EarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLI 464 (807)
T KOG0066|consen 389 EARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLI 464 (807)
T ss_pred hhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEE
Confidence 34455666666664 3 488899999999999999999999999999999999999999988888887664 59999
Q ss_pred EcCCHHHHHh-cccc
Q psy17960 122 TTHYIEEARQ-ADMR 135 (137)
Q Consensus 122 ~tH~~~~~~~-~d~~ 135 (137)
+|||-.++.. |..|
T Consensus 465 VSHDQgFLD~VCtdI 479 (807)
T KOG0066|consen 465 VSHDQGFLDSVCTDI 479 (807)
T ss_pred EecccchHHHHHHHH
Confidence 9999999988 7654
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.3e-13 Score=111.49 Aligned_cols=115 Identities=27% Similarity=0.415 Sum_probs=87.6
Q ss_pred CCCCCHHHHHHHHHHhcCCChhH---HHHHHHH------HHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC--e
Q psy17960 20 FEEFTISETFAFFSKLYNIPRSS---VEAVIKD------LQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD--I 86 (137)
Q Consensus 20 ~~~ltv~e~l~~~~~~~~~~~~~---~~~~~~~------~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~--i 86 (137)
+..|++.+...|+..+. ++..+ .+..+.+ ++..+|+.+ .+|...+|||||.||+.+|.-+-.+=- +
T Consensus 426 ~~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 34567777777765442 22211 1112222 223456765 589999999999999999999877633 8
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++||||+.||-+...+++++.|++++. .|-|+|++.||.+.+..||.++
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCHHHHhhcCEEE
Confidence 999999999999999999999999985 5779999999999999999874
No 414
>KOG0065|consensus
Probab=99.49 E-value=3.2e-14 Score=121.13 Aligned_cols=130 Identities=26% Similarity=0.334 Sum_probs=104.8
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCC-------ChhH-HHHHHHHHHHHcCCCC-C-----CCCCCCCChHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNI-------PRSS-VEAVIKDLQLVLDLPP-G-----NQLCSTLSGGQAR 72 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~-~-----~~~~~~LS~G~kq 72 (137)
++.++|.+|+..-++.|||+|.+.|.++..+. ++.+ .....+.+++.+|++. . |...+..|||||+
T Consensus 188 ~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerK 267 (1391)
T KOG0065|consen 188 KKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERK 267 (1391)
T ss_pred CceEEeccccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccc
Confidence 56789999999999999999999998876432 1111 1124567788888864 4 5556789999999
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH-HHh-ccccc
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQ-ADMRE 136 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~-~~~-~d~~~ 136 (137)
||.+|-+++.+|+++.+||+|+|||....-++.+.++++.+..+.|++++-+.... +-. .|+++
T Consensus 268 Rvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~ 333 (1391)
T KOG0065|consen 268 RVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI 333 (1391)
T ss_pred eeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee
Confidence 99999999999999999999999999999999999999987778899888887644 222 56554
No 415
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.49 E-value=5.9e-14 Score=120.55 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=66.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.+++..||||||++++||++++. .|++++||||++|||+..+..+.++|.++.. +..+|++||+...+..||++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHHHhccee
Confidence 45678999999999999999985 6799999999999999999999999998853 46899999999888779887
Q ss_pred c
Q psy17960 136 E 136 (137)
Q Consensus 136 ~ 136 (137)
+
T Consensus 1147 ~ 1147 (1164)
T TIGR02169 1147 I 1147 (1164)
T ss_pred E
Confidence 5
No 416
>KOG0060|consensus
Probab=99.49 E-value=2.5e-13 Score=107.90 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=87.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh-----cCCChhHHHHHHHHH-----HH-HcCCCC--CCCCCCCCChHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL-----YNIPRSSVEAVIKDL-----QL-VLDLPP--GNQLCSTLSGGQARRV 74 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~-----~~~~~~~~~~~~~~~-----~~-~~~l~~--~~~~~~~LS~G~kqrv 74 (137)
+.+-|+||.|.+... |.+|.+.|+... ...+.+++.+.++.+ ++ ..|+.. .......||+||+||+
T Consensus 501 ~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred CceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence 458899999987666 999999887432 122233333333322 22 223331 1234568999999999
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
++||.+.++|++-+|||-||++|......+...+++ .|.|.|-|+|.-..-+
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKSLWK 631 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHHHHh
Confidence 999999999999999999999999999888888754 4899999999876644
No 417
>PRK02224 chromosome segregation protein; Provisional
Probab=99.48 E-value=1e-13 Score=116.86 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=64.7
Q ss_pred CCCCCCChHHHH------HHHHHHHHhcC-----C-CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEcCCHH
Q psy17960 61 QLCSTLSGGQAR------RVSIAVTLLHS-----P-DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIE 127 (137)
Q Consensus 61 ~~~~~LS~G~kq------rv~ia~al~~~-----p-~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~tH~~~ 127 (137)
..+..||||||+ |++++++++.+ | +++|+||||++||+..+..+.++|..+.. .| .+||++||+.+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~ 855 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDE 855 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChH
Confidence 346799999999 88898888864 3 67999999999999999999999999864 35 48999999999
Q ss_pred HHHhccccc
Q psy17960 128 EARQADMRE 136 (137)
Q Consensus 128 ~~~~~d~~~ 136 (137)
.+..||+++
T Consensus 856 ~~~~ad~~~ 864 (880)
T PRK02224 856 LVGAADDLV 864 (880)
T ss_pred HHHhcCeeE
Confidence 998788875
No 418
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=3.9e-13 Score=97.19 Aligned_cols=73 Identities=23% Similarity=0.185 Sum_probs=57.6
Q ss_pred CCCCCCChHHHHHHHHHHHH--hcCCCeEEEcCC---CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccc
Q psy17960 61 QLCSTLSGGQARRVSIAVTL--LHSPDIIVLDEP---TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADM 134 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al--~~~p~illlDEP---t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~ 134 (137)
.....+|+|++++..+++++ +.+|+++||||| |+++|+.+.... +++.+.++.|.++|++||+ .++.. ||+
T Consensus 85 ~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~ 161 (222)
T cd03285 85 SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADE 161 (222)
T ss_pred chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhc
Confidence 34678999999999999999 899999999999 888999888543 3344443347899999997 44444 776
Q ss_pred cc
Q psy17960 135 RE 136 (137)
Q Consensus 135 ~~ 136 (137)
+.
T Consensus 162 ~~ 163 (222)
T cd03285 162 VP 163 (222)
T ss_pred CC
Confidence 53
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.43 E-value=5.3e-13 Score=93.93 Aligned_cols=74 Identities=22% Similarity=0.130 Sum_probs=55.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
.++...++|+|++|...+.. .+.+|+++|+|||++|+|+.....+ ..+++.+.++.+.++|++||+++....++
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 55 LAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLAD 129 (185)
T ss_pred hhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhh
Confidence 45567788888887433333 2459999999999999999988776 45666665434789999999997655465
No 420
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=3.8e-13 Score=99.80 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHHh---------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 63 CSTLSGGQARRVSIAVTLL---------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~---------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
...+|+||+|++++|++++ .+|+++|+||||++||+..++.+.+.+.+. + .+++++|+...+..
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~ 253 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDA 253 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccc
Confidence 4568999999999999985 799999999999999999999999999764 2 35666666666554
No 421
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.40 E-value=1.3e-12 Score=93.04 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWK-YLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
......+|.+++| +..+.+++.+|+++|+|||++|+|+.....+.. +++.+.+ .+.++|++||+.+.+..++.
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~~~ 159 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLPEQ 159 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHhhc
Confidence 3445677777765 666678889999999999999999999888755 5666654 58899999999988887764
No 422
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.36 E-value=3e-12 Score=91.13 Aligned_cols=91 Identities=19% Similarity=0.162 Sum_probs=63.2
Q ss_pred EEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcC
Q psy17960 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDE 91 (137)
Q Consensus 12 ~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDE 91 (137)
+++|...+|+.+|+.||+.+.... ...+. ..+..+++.++. .+|+++|+||
T Consensus 63 ~~~q~~~l~~~~~~~d~l~~~~s~---~~~e~-~~~~~iL~~~~~-------------------------~~p~llllDE 113 (199)
T cd03283 63 FELPPVKIFTSIRVSDDLRDGISY---FYAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDE 113 (199)
T ss_pred cCcccceEEEeccchhccccccCh---HHHHH-HHHHHHHHhccC-------------------------CCCeEEEEec
Confidence 456655677778888887654311 11121 223334333221 6999999999
Q ss_pred CCCCCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 92 PTSGVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 92 Pt~gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
|++|+|+..+..+. .+++.+.+ .|.++|++||+++.+...
T Consensus 114 p~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 114 IFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 99999999998775 57788764 488999999999988664
No 423
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=1.8e-12 Score=99.91 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHHHHhc---------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 64 STLSGGQARRVSIAVTLLH---------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~---------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
..+|.||+|++.+|.+|+. +|+++|||||+++||+..++.+++.+.+. |..|+++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999998653 569999999987654
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=99.31 E-value=5.9e-12 Score=97.02 Aligned_cols=67 Identities=24% Similarity=0.263 Sum_probs=58.1
Q ss_pred CCCCCCChHHHHHHHHHHHHh---------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 61 QLCSTLSGGQARRVSIAVTLL---------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~---------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.....+|.||+|++.+|++++ .+|+++|||||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLAD 344 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhh
Confidence 345689999999999999986 799999999999999999999999988653 3479999999877654
No 425
>KOG2355|consensus
Probab=99.29 E-value=4e-12 Score=90.41 Aligned_cols=82 Identities=28% Similarity=0.377 Sum_probs=70.0
Q ss_pred HHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 49 DLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 49 ~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+...+++.. .-+.+.+|-|||+||.|++.|++.-++|||||.|--||+.++..+++.+++-++.+|+||+++||..+-
T Consensus 132 ~LI~iLDIdl-~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG 210 (291)
T KOG2355|consen 132 KLIDILDIDL-RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG 210 (291)
T ss_pred hhhhheeccc-eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc
Confidence 3444444432 335678999999999999999999999999999999999999999999999998899999999998766
Q ss_pred HHh
Q psy17960 129 ARQ 131 (137)
Q Consensus 129 ~~~ 131 (137)
++.
T Consensus 211 Le~ 213 (291)
T KOG2355|consen 211 LET 213 (291)
T ss_pred hhh
Confidence 554
No 426
>KOG0063|consensus
Probab=99.28 E-value=3.9e-12 Score=98.52 Aligned_cols=84 Identities=26% Similarity=0.313 Sum_probs=74.0
Q ss_pred HcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 53 VLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 53 ~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
...+.. .++.+.+||||+-||.+||.+.+++.+++++|||.+-||...+.+....|+.+.. .+.-||++.||++...+
T Consensus 200 ~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 200 QLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN-PDRYIIVVEHDLSVLDY 278 (592)
T ss_pred HHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-CCCeEEEEEeechHHHh
Confidence 333433 5778899999999999999999999999999999999999999999999999874 46789999999999988
Q ss_pred -cccccC
Q psy17960 132 -ADMREL 137 (137)
Q Consensus 132 -~d~~~~ 137 (137)
.|-+||
T Consensus 279 lSDFiCc 285 (592)
T KOG0063|consen 279 LSDFICC 285 (592)
T ss_pred hhcceeE
Confidence 777664
No 427
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.28 E-value=1.2e-11 Score=88.49 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.++...++|+|++|. ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+.+ .|.++|++||+.+.+..
T Consensus 85 ~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 85 MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAI 156 (204)
T ss_pred cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHH
Confidence 356678899999975 566678899999999999999999776664 556777764 48999999999999876
No 428
>KOG0064|consensus
Probab=99.27 E-value=1e-11 Score=98.28 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=85.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHH-----HhcCCChhHHHHHHHHH-----HHHc-CCCCCCCCCCCCChHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFS-----KLYNIPRSSVEAVIKDL-----QLVL-DLPPGNQLCSTLSGGQARRVSI 76 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~~-----~~~~-~l~~~~~~~~~LS~G~kqrv~i 76 (137)
.++-|+||.|.+-- =|.+|.+.|+- .-.+.+..+....++.+ ++.. |.+.....-..||||+|||+++
T Consensus 545 ~~mFYIPQRPYms~-gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m 623 (728)
T KOG0064|consen 545 NNIFYIPQRPYMSG-GTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM 623 (728)
T ss_pred cceEeccCCCccCc-CcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH
Confidence 35899999997653 37888876642 22344555555444332 2221 2221122335799999999999
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
||.+.++|++.+|||-||++.+.....+++..+. .|.+.+-+||.+.....
T Consensus 624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPSLWKY 674 (728)
T ss_pred HHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCccHHHH
Confidence 9999999999999999999999988888887654 58999999999876543
No 429
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.26 E-value=2e-11 Score=103.62 Aligned_cols=74 Identities=34% Similarity=0.421 Sum_probs=65.7
Q ss_pred CCCCCCChHHHHHHHHHHHHh------cC--CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLL------HS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~------~~--p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
+++.+|||||+-.++||.+|+ .+ -++++|||||..||+.....+.++|..+.. .+.+|++|||+-++...+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~eel~e~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVEELKERA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHhC
Confidence 688999999999888887764 35 699999999999999999999999999975 488999999999999887
Q ss_pred ccc
Q psy17960 133 DMR 135 (137)
Q Consensus 133 d~~ 135 (137)
|.+
T Consensus 890 ~~~ 892 (908)
T COG0419 890 DVR 892 (908)
T ss_pred CeE
Confidence 754
No 430
>KOG0063|consensus
Probab=99.26 E-value=1.6e-11 Score=95.20 Aligned_cols=124 Identities=23% Similarity=0.260 Sum_probs=89.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
.++|-||...--..-||++.+.--.+-..... .......+-+.+.+ .++.+.+||||++||+++|..|-..++++
T Consensus 403 nVSykpqkispK~~~tvR~ll~~kIr~ay~~p----qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 403 NVSYKPQKISPKREGTVRQLLHTKIRDAYMHP----QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ceeccccccCccccchHHHHHHHHhHhhhcCH----HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence 57888887654444577775431111000111 12222222222333 57788999999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+.|||.+-||...+...-..+++..-..++|-.++.||.-.+.+ +||+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeE
Confidence 99999999999999998888888654457899999999998888 88875
No 431
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.24 E-value=1.9e-11 Score=107.06 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=55.3
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 60 NQLCSTLSGGQARRVS----IAVT--------LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~----ia~a--------l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+...+.|||||||+++ +|++ +..+|++++|||||+|+|+..+..+++++.++ |.++||+||.+-
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSEREW 1317 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccchh
Confidence 4456899999999996 5655 55899999999999999999999999999876 578999999864
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.21 E-value=8.1e-11 Score=84.52 Aligned_cols=69 Identities=30% Similarity=0.392 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHH----hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 65 TLSGGQARRVSIAVTL----LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al----~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.||||||..++||.-+ ...+++++||||.++||...+..+.++|+++.+ +.-+|++||+......+|+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~ 208 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMFEDADKL 208 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHHTT-SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccc
Confidence 8999999999999765 346789999999999999999999999999853 46799999999998888764
No 433
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.2e-10 Score=88.33 Aligned_cols=74 Identities=31% Similarity=0.383 Sum_probs=66.5
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
..-.||.|||+|+++.-|++-+-+|+++||=.+--||..++.+.+.+--+-++.|+||+.+|||-.--..+||.
T Consensus 445 s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 445 SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 45689999999999999999999999999999999999999999887776667899999999998777667765
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.17 E-value=8e-11 Score=98.39 Aligned_cols=70 Identities=30% Similarity=0.311 Sum_probs=60.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.....++|+||++++.+++++ .+|+++|+|||++|+|+.....+. .++..+.+ .|.++|++||+.+....
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELKAL 455 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHHHH
Confidence 345678999999999999998 899999999999999999999885 46777754 58899999999988766
No 435
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.14 E-value=1.6e-10 Score=89.55 Aligned_cols=83 Identities=27% Similarity=0.317 Sum_probs=74.0
Q ss_pred HHHHHcCCCC---CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 49 DLQLVLDLPP---GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 49 ~~~~~~~l~~---~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.++...|+.+ -.++.++||.|||.|+.||.+++.+|.+++.||-.+.||+.+...+..-+.+++++.|.|++++||.
T Consensus 488 eILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThr 567 (593)
T COG2401 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567 (593)
T ss_pred HHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 4445556643 2567899999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHh
Q psy17960 126 IEEARQ 131 (137)
Q Consensus 126 ~~~~~~ 131 (137)
.+...+
T Consensus 568 pEv~~A 573 (593)
T COG2401 568 PEVGNA 573 (593)
T ss_pred HHHHhc
Confidence 998876
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.14 E-value=2.7e-10 Score=81.94 Aligned_cols=69 Identities=22% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCCC--hHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhc--CCcEEEEEcCCHHHHHhc
Q psy17960 64 STLS--GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHT--DKRTIIITTHYIEEARQA 132 (137)
Q Consensus 64 ~~LS--~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~--~~~tvi~~tH~~~~~~~~ 132 (137)
..+| .-+.||++++++++.+|+++|+|||++|+|+.....+ ..+++++.+. .+.++|++||+.+.+...
T Consensus 87 ~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 87 SGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 3455 4457999999999999999999999999999765554 6788887643 135899999999998763
No 437
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.14 E-value=2.1e-10 Score=81.93 Aligned_cols=67 Identities=30% Similarity=0.409 Sum_probs=54.7
Q ss_pred CCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 62 LCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+...+|.|+++.+.++.++...+ .++++|||-++|.|..++.+.+.+.+..+ .+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 34567999999999888888776 89999999999999999999999988765 467899999998654
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.02 E-value=1e-09 Score=91.66 Aligned_cols=69 Identities=28% Similarity=0.325 Sum_probs=59.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
....++|+|++++..+++++ .+|.++|+|||++|+|+.....+ ..++..+.+ .|.++|++||+.+....
T Consensus 381 ~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 381 QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELKAL 450 (771)
T ss_pred hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHH
Confidence 45678999999999988876 78999999999999999999998 567777764 58899999999887543
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.98 E-value=1.2e-09 Score=78.80 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=46.3
Q ss_pred CCCChHHHHH----HHHHHHH--hcCCCeEEEcCC---CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 64 STLSGGQARR----VSIAVTL--LHSPDIIVLDEP---TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 64 ~~LS~G~kqr----v~ia~al--~~~p~illlDEP---t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
.++|.|+.+. ..++.++ +.+|+++||||| |+++|..+. ...+++.+.+..+.++|++||+.+...-+|+
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~ 161 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEGK 161 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhhc
Confidence 4566666543 3465555 569999999999 777887552 2344454543337899999999766554554
No 440
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.94 E-value=2e-09 Score=67.36 Aligned_cols=51 Identities=27% Similarity=0.350 Sum_probs=39.4
Q ss_pred CCCCCCCChHHH-HHHHHHHHH------hc------CCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 60 NQLCSTLSGGQA-RRVSIAVTL------LH------SPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 60 ~~~~~~LS~G~k-qrv~ia~al------~~------~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
.+..+.+||||| ..+.++.++ .. .|++++|||||++||+.....+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 467789999999 444444433 22 3789999999999999999999999864
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.91 E-value=1.9e-09 Score=75.17 Aligned_cols=69 Identities=9% Similarity=-0.054 Sum_probs=57.6
Q ss_pred CCCCCCCCChHHHH------HHHHHHHHhcCCCeEEEcCCCCCCC---HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 59 GNQLCSTLSGGQAR------RVSIAVTLLHSPDIIVLDEPTSGVD---PLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 59 ~~~~~~~LS~G~kq------rv~ia~al~~~p~illlDEPt~gLD---~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+..+..+|+|++| ......+...+|+++++|||++.+| ...+..+.+.++.+++ .|.|+|+++|+...
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccC
Confidence 35677889999988 5555555678999999999999999 8888888899988875 58999999998765
No 442
>PRK14079 recF recombination protein F; Provisional
Probab=98.89 E-value=2.8e-09 Score=81.86 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=48.9
Q ss_pred CCCChHHHHHHHHHHHHh---------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 64 STLSGGQARRVSIAVTLL---------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~---------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.-+|+||++++.+|..|+ .+|+++|||||+++||...+..+.+.+... ..++|-+|+..
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~ 329 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP 329 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC
Confidence 457999999999999999 899999999999999999999999888543 23455555433
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.79 E-value=9.1e-09 Score=73.63 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEcCCC-----CCCCHHHHHHHHHHHHHHh
Q psy17960 70 QARRVSIAVTLLHSPDIIVLDEPT-----SGVDPLLAHYFWKYLNRLA 112 (137)
Q Consensus 70 ~kqrv~ia~al~~~p~illlDEPt-----~gLD~~~~~~i~~~l~~~~ 112 (137)
+++++.||++++.+|+++++|||| +|||+..++.+.+.+++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 899999999999999999999999 9999999999999999985
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.74 E-value=5.7e-08 Score=70.16 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=53.2
Q ss_pred CCCChHH--HHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHH-HHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 64 STLSGGQ--ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKY-LNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 64 ~~LS~G~--kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~-l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
..+|.=+ -+++.-....+.+|+++|+|||++|+++.....+... ++.+.+..+.+++++||+++.+..
T Consensus 88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 4456544 4555555555689999999999999999999998777 677764338899999999998776
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.62 E-value=2.7e-07 Score=66.84 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=51.0
Q ss_pred CCCCChHH--HHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 63 CSTLSGGQ--ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 63 ~~~LS~G~--kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
...+|.=+ -+++.-+..-+.+|+++|+|||.+|.|+.....+ ..+++.+.+..+.++|++||+.+....
T Consensus 88 ~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 88 QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 34555544 4555555555678999999999999997777764 567777765447899999999988654
No 446
>PF13175 AAA_15: AAA ATPase domain
Probab=98.55 E-value=2.7e-07 Score=71.49 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=57.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhc------C-CC---eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLH------S-PD---IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~------~-p~---illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
-+...+|.|.++.+.++..+.. + +. ++++|||-+.|.|..++.+.+.|.++....+.-||++||.+..
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 3567899999988888776521 2 22 9999999999999999999999999986567899999999865
No 447
>PRK13695 putative NTPase; Provisional
Probab=98.50 E-value=4.2e-07 Score=63.12 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=52.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCeEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~~p~illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++...+|++++-+..+++..+.+|+++++||| +.++|+. +.+.+.++. +.+.++|+++|+-.....+|+|.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~ 146 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIK 146 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHH-hCCCeEEEEECchhhHHHHHHHh
Confidence 34567999999999999999999999999994 4455544 445555554 34789999999954444466653
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.46 E-value=3.5e-07 Score=77.30 Aligned_cols=49 Identities=22% Similarity=0.428 Sum_probs=44.9
Q ss_pred hcCCCeEEEcCCCCCC-CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 81 LHSPDIIVLDEPTSGV-DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 81 ~~~p~illlDEPt~gL-D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
..+|+++++|||+.+| |+...+.+.+.++..++ .|.+++++||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHh
Confidence 5799999999999999 79999999999999875 4789999999999985
No 449
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.35 E-value=8.5e-07 Score=64.64 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHH----------------HHhcCCCeEEEcCCCC------CCC
Q psy17960 41 SSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAV----------------TLLHSPDIIVLDEPTS------GVD 97 (137)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~----------------al~~~p~illlDEPt~------gLD 97 (137)
.+..+++..+...+++.. .++... .+|+.|++.+++ +...+|+++++| |++ .+|
T Consensus 54 ~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d 130 (239)
T cd01125 54 EEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSEND 130 (239)
T ss_pred HHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCC
Confidence 345555655555444322 222221 245556555443 346799999999 765 479
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 98 PLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+.....+++.+.++.++.|++|++++|...
T Consensus 131 ~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 131 NGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 999999999999988777999999999864
No 450
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.33 E-value=1.7e-06 Score=73.54 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=49.6
Q ss_pred HHHHHhcCCCeEEEcCCCCCC-CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGV-DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gL-D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
+++++..+|+++++|||+.+| |+..++.+.+.++.+++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhh
Confidence 567888999999999999999 79999999999999875 47899999999998865
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.25 E-value=2.6e-06 Score=70.47 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=47.1
Q ss_pred CCCCCChHHHHHHHHHHHHhc------CCCeEEEcCCCCCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 62 LCSTLSGGQARRVSIAVTLLH------SPDIIVLDEPTSGVDPLLAHYFWK-YLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~------~p~illlDEPt~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
++..|||||+|-+++|..++. ..++ ++|||++.||...+..+.+ .+... ..-||+.|||-+.-.
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~----~~QvIils~d~e~~~ 618 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA----SHQVLLLSTDEEVDE 618 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc----CCeEEEEechHhhCH
Confidence 567899999999877664433 3445 5799999999999999875 55443 345788888876544
No 452
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.20 E-value=3.9e-06 Score=73.43 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=63.4
Q ss_pred CCCCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.....||||||--++||.-++ ...++++|||--++||..+...+..+|++.. .+.=.|+|||.......+|+.
T Consensus 1062 ~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s--~~sQFIvIThr~~~m~~ad~l 1138 (1163)
T COG1196 1062 QSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS--KETQFIVITHRKGTMEAADRL 1138 (1163)
T ss_pred cchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC--cCCeEEEEEcChHHHHHHHHH
Confidence 345679999999999998764 4577999999999999999999999999986 366799999999988888765
No 453
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.17 E-value=1.1e-05 Score=60.91 Aligned_cols=66 Identities=27% Similarity=0.433 Sum_probs=59.3
Q ss_pred CCCChHHHHHHHHHHHHhc--CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 64 STLSGGQARRVSIAVTLLH--SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~--~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.+||-|+.+-+++|.+|.+ .|.++++|||-++|-|..-..+...+.+..+. + -|+++||..+++..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~-s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKR-S-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhcc-c-eEEEEeCCHHHHhh
Confidence 4899999999999999986 48899999999999999999999999998653 3 79999999998865
No 454
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.17 E-value=1e-06 Score=64.88 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=54.0
Q ss_pred CCCChHH--------HHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHH-HHHHHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 64 STLSGGQ--------ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHY-FWKYLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 64 ~~LS~G~--------kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~-i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
..+|||+ +||+++||++..+++|.+| ||+.+|...... +. +.+++. .+.|.|+.||++.....+|.
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la~~~~~pa 202 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLAERRIFPA 202 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHhhCCCCCe
Confidence 4579999 9999999999899999999 999999544332 43 455542 46799999999999887776
Q ss_pred cc
Q psy17960 135 RE 136 (137)
Q Consensus 135 ~~ 136 (137)
|.
T Consensus 203 I~ 204 (249)
T cd01128 203 ID 204 (249)
T ss_pred EE
Confidence 64
No 455
>KOG0964|consensus
Probab=98.16 E-value=1.9e-06 Score=72.39 Aligned_cols=73 Identities=23% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCCCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 62 LCSTLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
...+||||||--++||.-++- .++++||||.-++||+..+..+..+|+++.. ..-.|.+|-.++.+.-||+.+
T Consensus 1094 ~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~--~aQFI~TTFRpEll~vAdKfy 1170 (1200)
T KOG0964|consen 1094 EMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSD--SAQFITTTFRPELLSVADKFY 1170 (1200)
T ss_pred HHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhh--ccceEeecccHHHHHHHHhhh
Confidence 345899999999999987753 4579999999999999999999999999975 357899999999998888753
No 456
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.06 E-value=1.5e-05 Score=57.96 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCC----CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 65 TLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGV----DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~----~~p~illlDEPt~gL----D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+|+++.++..+.+.+- .+|+++++||||+++ |+...+.+.+.++.+++. |.|+++ ||+...
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~ 164 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKE 164 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-Eecccc
Confidence 35666655544444333 369999999999999 888888999999988754 666555 565543
No 457
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.03 E-value=2.7e-05 Score=55.08 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.+.....|.||-=---+.+.+- +--+++||||-++|.|.-+-.++..|.++.+ .|.-+||+||.+=...
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPiLlA 192 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPILLA 192 (233)
T ss_pred CcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChhhee
Confidence 3445677999976666666654 5679999999999999999999999999986 4789999999986543
No 458
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.99 E-value=3.2e-05 Score=57.62 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 71 ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 71 kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
|.....+.+.+.+|+++++|||++ .+.+..+++.+. .|.++|++||+.+.
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH--AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEEEEechhHH
Confidence 343445555557999999999974 334555555553 48999999998666
No 459
>PF13166 AAA_13: AAA domain
Probab=97.95 E-value=7.4e-05 Score=62.27 Aligned_cols=70 Identities=27% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCCCChHHHHHHHHHHHHh--c-------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh-cCCcEEEEEcCCHHHHHh
Q psy17960 62 LCSTLSGGQARRVSIAVTLL--H-------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH-TDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~--~-------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~-~~~~tvi~~tH~~~~~~~ 131 (137)
....||-|||.-+++|-.|+ . +..++++|-|-|+||...+..+.+.|.+... ....=||+-|||+.+...
T Consensus 497 ~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~~ 576 (712)
T PF13166_consen 497 PAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFKE 576 (712)
T ss_pred ccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHHH
Confidence 45789999999999998653 2 5689999999999999999999999999841 124579999999988754
No 460
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.89 E-value=6.5e-05 Score=64.01 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=53.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc--CCCeEEEcCC---CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLH--SPDIIVLDEP---TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~--~p~illlDEP---t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+.....+|.-+.....++..+-. ++.++|+||| |+.+|. ....+.+++.+.+..+.+++++||+.+...-++
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAEYLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHHHHHhcCCceEEEEechHHHHHHhh
Confidence 44456788888888888888765 8999999999 777773 334566777776544689999999966554454
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=7.4e-05 Score=54.20 Aligned_cols=63 Identities=19% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHHhc--CCCeEEEcCCCCC---CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 65 TLSGGQARRVSIAVTLLH--SPDIIVLDEPTSG---VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~--~p~illlDEPt~g---LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
..|.++.+.+..+...+. +|+++++||||+. .|......++..++.+++ .|.|+++++|+...
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcC
Confidence 457788999999999887 8999999999964 455555556566666654 47899999997653
No 462
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.84 E-value=4.7e-05 Score=64.56 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=44.6
Q ss_pred HhcCCCeEEEcCCCCCCC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 80 LLHSPDIIVLDEPTSGVD-PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
+-.+|+++++|||+.+|| +..++.+.+.++..++ .|.+++++||+++.+..
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~ 683 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADIDG 683 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHhc
Confidence 345899999999999999 7889999999999875 57899999999998754
No 463
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00011 Score=59.31 Aligned_cols=68 Identities=28% Similarity=0.424 Sum_probs=58.3
Q ss_pred CCCChHHHHHHHHHHH--HhcC--CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 64 STLSGGQARRVSIAVT--LLHS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~a--l~~~--p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+--||||--|+++|.- ++.. .+.++|||--+|+.-.....|-+.|+++.+ +.=|+.|||-+..+..+|
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~--~~QVl~VTHlPQVAa~ad 501 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE--HHQVLCVTHLPQVAAMAD 501 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc--CceEEEEecHHHHHhhhc
Confidence 3479999999999974 4433 559999999999999999999999999974 567999999999988776
No 464
>KOG0962|consensus
Probab=97.72 E-value=7.7e-05 Score=64.88 Aligned_cols=66 Identities=27% Similarity=0.329 Sum_probs=53.9
Q ss_pred CChHHHH------HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHH----hhcCCcEEEEEcCCHHHHHh
Q psy17960 66 LSGGQAR------RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL----AHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 66 LS~G~kq------rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~----~~~~~~tvi~~tH~~~~~~~ 131 (137)
=|.|||- |+++|=.++.+..+|-|||||++||.....-+...+.++ +...+.-.|++|||-.++.-
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 3889974 777888899999999999999999999998877665543 33346678999999998864
No 465
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.72 E-value=0.00021 Score=47.92 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=48.3
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
..+.+..++...+++...+|+++++|||++ +.+....+.+.+++...+ +.+.|+++++|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR-KGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh-cCCceEEEEEecCCcc
Confidence 345566677888999999999999999995 455555666666666654 4689999999987543
No 466
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.69 E-value=0.00014 Score=61.59 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=45.7
Q ss_pred HHhcCCCeEEEcCCCCCCC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 79 TLLHSPDIIVLDEPTSGVD-PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.+..+|.++++|||...|| +...+.+.+.++..++ .|.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence 3567899999999999999 8889999999999875 47799999999988765
No 467
>KOG0933|consensus
Probab=97.51 E-value=7.7e-05 Score=63.25 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 63 CSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..+||||||-.|+++..|+ ..++++||||.-++||....+.|-.+|+..-. +.-.|+||=-
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~--~sQFIVVSLK 1144 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFT--HSQFIVVSLK 1144 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCC--CCeEEEEEch
Confidence 4679999999998876543 35679999999999999999999999987542 4556666643
No 468
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.00021 Score=54.61 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=37.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
+++|||+.+||+.++..+++.|++.. .+.++|++||+.+.+..
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLP 158 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChH
Confidence 45689999999999999999999874 36889999999987654
No 469
>KOG0996|consensus
Probab=97.39 E-value=0.00015 Score=62.30 Aligned_cols=64 Identities=22% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+.+.+||||+|-.-+||..++. ..++++|||.-++||..+...+.+.|++..+ +.-.|+||=.
T Consensus 1190 WK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTk--NAQFIIISLR 1257 (1293)
T KOG0996|consen 1190 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTK--NAQFIIISLR 1257 (1293)
T ss_pred hhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhcc--CCeEEEEEeh
Confidence 34578999999999999998865 4679999999999999999999999998654 4556666543
No 470
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.0015 Score=46.39 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
++++++..+|+++++|||. |......+ ++ ... .|..++.++|..+.....+|+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~-~a~-~G~~v~~t~Ha~~~~~~~~Rl 118 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---LT-AAE-TGHLVMSTLHTNSAAKTIDRI 118 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HH-HHH-cCCEEEEEecCCcHHHHHhHH
Confidence 5788999999999999996 55543333 32 333 478999999999877666665
No 471
>KOG0018|consensus
Probab=97.02 E-value=0.00098 Score=57.10 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcC----CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHS----PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~----p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
-++...||||+|--.+||..++-+ ++.++|||.-++||..+..++...|+ ..+.-.|+||=-.++-..+|
T Consensus 1046 Fr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr----~~~~Q~IvISLK~~~y~kad 1119 (1141)
T KOG0018|consen 1046 FRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR----SSNFQFIVISLKEEFYQKAD 1119 (1141)
T ss_pred cCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh----cCCceEEEEeccHHHhhhhh
Confidence 345678999999999999987654 67999999999999999999999997 23555666665555554444
No 472
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.95 E-value=0.0077 Score=44.01 Aligned_cols=70 Identities=24% Similarity=0.234 Sum_probs=48.3
Q ss_pred CCCCCChHHHHHHHHHHHH--hcCCCeEEEcCCCCCCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 62 LCSTLSGGQARRVSIAVTL--LHSPDIIVLDEPTSGVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al--~~~p~illlDEPt~gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
....+|.=+.--..++..+ +.+..++|+||+..|-++.....+. .+++.+.++.+..++++||+.+....
T Consensus 99 ~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 99 IESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp STTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred cccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 3456777666555555555 5567799999999999999988864 44555654347889999999976543
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.74 E-value=0.00014 Score=58.44 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=42.6
Q ss_pred CCCCCCChHHHHHHHHH--HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 61 QLCSTLSGGQARRVSIA--VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia--~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+....+|+|++||+.|+ .++...|+.. ...++.+.++++.+++ .|+|+|+++|+++.
T Consensus 111 ~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 111 RINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEEEEEecCccc
Confidence 34457788888888888 5555554433 4677889999988864 68999999999865
No 474
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.58 E-value=0.0054 Score=46.51 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.-.+..+|-.+|+++++|||.+ .++++.++... ..+.+++.++|..+.....+|+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~~~~Rl 262 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TGHPGSITTLHAGSPEEAFEQL 262 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cCCCeEEEEEeCCCHHHHHHHH
Confidence 3467778999999999999996 34566777665 3344679999998865556654
No 475
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.57 E-value=0.00072 Score=47.44 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH--HHh-ccccc
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE--ARQ-ADMRE 136 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~--~~~-~d~~~ 136 (137)
.|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+... .|.+|++.+|.+.+ ... ||.++
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~~pll~e~~~~~~~D~vv 128 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLDVPLLFENKLRSLCDRVI 128 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEEchHhhhCCcHHhCCEEE
Confidence 488999999999999999988887 78999999999999988753 46799999999966 444 67654
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.50 E-value=0.0049 Score=48.89 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=53.7
Q ss_pred CCCCChHHHHHHHHHHHHh-------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 63 CSTLSGGQARRVSIAVTLL-------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~-------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
..+.|.|+|+|+..+.+.+ .++-++++|+||++.|+. +++...+.+... .|.+..+.||.....+++
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMKKLLERS 292 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccchhHHHHh
Confidence 3678999999999999887 789999999999999996 666666666543 477888888866666654
No 477
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.019 Score=46.73 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=55.3
Q ss_pred CCChHHHHHHHHHHHHhc--------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 65 TLSGGQARRVSIAVTLLH--------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~--------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.||-|++.-++++-.|+. .-+++++|.|.+++|..-.......++..+. +++-|++-||+--++.
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t-~~kQviVLtHntYF~r 601 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKT-NIKQVIVLTHNTYFYR 601 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHh-CceEEEEEeccceehH
Confidence 499999999998877653 4468999999999999999999999999874 5889999999965544
No 478
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.011 Score=45.94 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCCChHHHHHHHHHHHHhc---------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 64 STLSGGQARRVSIAVTLLH---------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~---------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.-.|.||++-+.+|.-|+. .++|||||+-+|-||..-+..+++. .+ .+.=+++++-+.+.+.
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~----~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE----LGVQVFVTTTDLEDID 344 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc----cCCeEEEEccCHHHhh
Confidence 4579999999999887654 7899999999999999999999988 33 2445677777766655
No 479
>PF13514 AAA_27: AAA domain
Probab=96.23 E-value=0.018 Score=50.77 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCCCChHHHH------HHHHHHHH-hcCCCe-EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 62 LCSTLSGGQAR------RVSIAVTL-LHSPDI-IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 62 ~~~~LS~G~kq------rv~ia~al-~~~p~i-lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.+..||.|.+= |++++..+ -.++++ +|+|++|.+.|..=....+++|.++.+. .=||+=||+...+.-
T Consensus 1022 ~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~--~QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1022 PVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRR--RQVIYFTCHEHLVEL 1097 (1111)
T ss_pred eHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccC--CeEEEEeccHHHHHH
Confidence 45679999974 55555566 334444 9999999999999999999999999753 357777777777664
No 480
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=96.22 E-value=0.035 Score=47.64 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCCCCChHHHHHHHHHHHH--hcCCCeEEEcCCCCCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 61 QLCSTLSGGQARRVSIAVTL--LHSPDIIVLDEPTSGVDPLLAHYFWK-YLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al--~~~p~illlDEPt~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.-...+|.=+-....++..| +.++.++|+||+..|.|+.....+.. ++..+.+..|..++++||+-+...-
T Consensus 647 ~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l 720 (840)
T TIGR01070 647 DLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTAL 720 (840)
T ss_pred chhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHH
Confidence 33456677776666666665 56788999999988888877777544 4455554357889999999876544
No 481
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.18 E-value=0.083 Score=33.65 Aligned_cols=62 Identities=29% Similarity=0.324 Sum_probs=47.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHH-----HHHHHhhcCCcEEEEEcCC
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWK-----YLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~-----~l~~~~~~~~~tvi~~tH~ 125 (137)
...++++..+..+.++--..|.++++||+..-.+......... .........+..+|.++|.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 4567888888899999888899999999999999988877654 1222223346788898884
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.80 E-value=0.022 Score=43.84 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.-+++++|-++|+++++||+. |+......++. . ..|.+|+.+.|-.+.....+|+
T Consensus 185 ~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~tGh~v~~T~Ha~~~~~~~~Rl 239 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMR---DLETVELALTA----A-ETGHLVFGTLHTNSAAQTIERI 239 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-HcCCcEEEEEcCCCHHHHHHHH
Confidence 345778899999999999997 77766544432 2 3488999999997666555554
No 483
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.76 E-value=0.024 Score=45.13 Aligned_cols=49 Identities=12% Similarity=0.275 Sum_probs=37.4
Q ss_pred cCCCeEEEcCCCCCCCHH-HHHHHHHHHHHHhhcCCcEEEEEc-CCHHHHHh
Q psy17960 82 HSPDIIVLDEPTSGVDPL-LAHYFWKYLNRLAHTDKRTIIITT-HYIEEARQ 131 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~-~~~~i~~~l~~~~~~~~~tvi~~t-H~~~~~~~ 131 (137)
.+|++|++|||...+|.. .+..++.++..+.+. |+.+|++| |++..+..
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~-~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSE 243 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc-CCeEEEECCCCHHHHHH
Confidence 379999999999988765 456788998888654 55666655 88877655
No 484
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.59 E-value=0.023 Score=45.27 Aligned_cols=71 Identities=20% Similarity=0.262 Sum_probs=49.3
Q ss_pred CCCChHHHHHHHHHH-----HHh-cCCC-eEEEc-----------------CC--CCCCCHHHHHHHHHHHHHHhh-cCC
Q psy17960 64 STLSGGQARRVSIAV-----TLL-HSPD-IIVLD-----------------EP--TSGVDPLLAHYFWKYLNRLAH-TDK 116 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~-----al~-~~p~-illlD-----------------EP--t~gLD~~~~~~i~~~l~~~~~-~~~ 116 (137)
.+=|.++|-+...+. -+. ++-+ ++++| || |+|+|+.....+.++++++.. +.|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 345677776654322 232 2333 67778 75 789999999999999999863 347
Q ss_pred c-----EEEEEcCCHHHHHhcccc
Q psy17960 117 R-----TIIITTHYIEEARQADMR 135 (137)
Q Consensus 117 ~-----tvi~~tH~~~~~~~~d~~ 135 (137)
. ||++.+||+++ .-||++
T Consensus 302 sIT~~~TVlv~~hdm~e-~i~d~v 324 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE-PIADTV 324 (438)
T ss_pred CeeeEEEEEEECCCCCc-hhhhhE
Confidence 5 99999999985 226654
No 485
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.01 E-value=0.03 Score=40.20 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=33.1
Q ss_pred cCCCeEEEcC-----CCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDE-----PTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDE-----Pt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+++.+++|- |+.+.|...++.+.++++.+++ .|.|+++++|.
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~ 153 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEA 153 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcc
Confidence 3688999994 3345566677788889988864 58999999995
No 486
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.83 E-value=0.027 Score=50.98 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=43.7
Q ss_pred CCCCChHHHHHHHHHHHHh--------c--------CC-CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcC
Q psy17960 63 CSTLSGGQARRVSIAVTLL--------H--------SP-DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTH 124 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~--------~--------~p-~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH 124 (137)
.+.||||||..+.+...++ . -| .+++|||. +++|..+...++++++.+ |. -+|.+=+
T Consensus 1363 ~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~~~~----~~q~i~~tP~ 1437 (1486)
T PRK04863 1363 SGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELCERL----DMQLLIAAPE 1437 (1486)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHHHHc----CCcEEEechh
Confidence 4789999998877766554 1 22 45699999 999999999999999754 33 4555545
Q ss_pred CHH
Q psy17960 125 YIE 127 (137)
Q Consensus 125 ~~~ 127 (137)
++.
T Consensus 1438 ~~~ 1440 (1486)
T PRK04863 1438 NIS 1440 (1486)
T ss_pred hcc
Confidence 443
No 487
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.82 E-value=0.16 Score=39.96 Aligned_cols=56 Identities=21% Similarity=0.398 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCeEEEcC----------CCCCCCHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHHHH
Q psy17960 75 SIAVTLLHSPDIIVLDE----------PTSGVDPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 75 ~ia~al~~~p~illlDE----------Pt~gLD~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~~~ 130 (137)
.+..|....|.++++|| +.+|.|......+.+++..+. ...+..||++||.++.+.
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LD 298 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 298 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCC
Confidence 45556678999999999 456778877777888877653 223568999999887653
No 488
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.068 Score=40.39 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCC-eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 74 VSIAVTLLHSPD-IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 74 v~ia~al~~~p~-illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
+.+++ +..+|+ ++|..+|-++|.|+.+..+.+++.+++. .|.-|++.||.-..+.
T Consensus 251 i~L~l-li~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~-~gvqvVveTHSdhiiN 306 (374)
T COG4938 251 IGLML-LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAA-RGVQVVVETHSDHIIN 306 (374)
T ss_pred HHHHe-eeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHh-cCcEEEEEechHHHhh
Confidence 44444 445555 8889999999999999999999999975 5899999999865543
No 489
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=94.57 E-value=0.22 Score=39.66 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHH-----HHHH----------HHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL-----AHYF----------WKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~-----~~~i----------~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+=||-.-|-..|.-|+=...++||+||=||.-...- +..+ .+.++++.++.|.+.|+++=-...
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 4568999999999999999999999999999764443 3333 455667766678766666555555
Q ss_pred HHh-ccccc
Q psy17960 129 ARQ-ADMRE 136 (137)
Q Consensus 129 ~~~-~d~~~ 136 (137)
... ||++.
T Consensus 401 y~~vAD~Vi 409 (448)
T PF09818_consen 401 YFDVADRVI 409 (448)
T ss_pred hHhhCCEEE
Confidence 444 77764
No 490
>COG1106 Predicted ATPases [General function prediction only]
Probab=94.18 E-value=0.21 Score=39.02 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=59.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc-CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLH-SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~-~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
+.+....|.|=++.+.+.-++.. +-+++++||+-++|-|.....+.+.+.+-.+.....++++||+-+.+.
T Consensus 246 ~~~~~~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id 317 (371)
T COG1106 246 KIPLNEEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFID 317 (371)
T ss_pred ceeeeeecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHHH
Confidence 34556789999999988887655 457999999999999999999999998876555678999999987764
No 491
>PRK06893 DNA replication initiation factor; Validated
Probab=94.16 E-value=0.12 Score=37.43 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=32.7
Q ss_pred hcCCCeEEEcCCCCCC-CHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGV-DPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gL-D~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+.+++++++||..... |......+++++....+ .|.+++++|++
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~ 133 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISAD 133 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCC
Confidence 4588999999998754 66667789999988764 46666655554
No 492
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=94.14 E-value=0.068 Score=43.97 Aligned_cols=48 Identities=31% Similarity=0.519 Sum_probs=41.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
.|.+||.+||=+.|-|..+..+++.++.+. .+.-+|++||..+.+..+
T Consensus 301 r~~ILLiEEPEahLHPq~q~~l~~ll~~l~--~~~Q~IvTThS~~~~s~~ 348 (581)
T COG3593 301 RPNILLIEEPEAHLHPQLQAVLWDLLNNLP--LGLQRIVTTHSPHLLSLA 348 (581)
T ss_pred ccceEEEeCchhhcCHHHHHHHHHHHhcCC--cceEEEEEcCCccccccc
Confidence 455999999999999999999999998875 367899999999998764
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.04 E-value=0.21 Score=32.11 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh----cCCcEEEEEcCCHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH----TDKRTIIITTHYIE 127 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~----~~~~tvi~~tH~~~ 127 (137)
+......+...++.++++||.-.. ++.....+.+.+..... ..+..+|++++...
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345556677788999999998765 56667778888887643 24788999998754
No 494
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.56 E-value=0.65 Score=37.62 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHH-HHHHHHHHhcCC-
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQAR-RVSIAVTLLHSP- 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kq-rv~ia~al~~~p- 84 (137)
++|+++.+++ ...++.|++.+++..++.+........+......++.. ....+.+.+.+++. .+.-..+++.++
T Consensus 287 ~kV~LI~~Dt---~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~ 363 (484)
T PRK06995 287 SKVALLTTDS---YRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAG 363 (484)
T ss_pred CeEEEEeCCc---cchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccC
Confidence 4789999876 34689999999888766543222222222333334433 23445554333322 223334444444
Q ss_pred ----CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 85 ----DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 85 ----~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
.+|+||.++.+ ..+.+.++.+.. .+.+-++.|+
T Consensus 364 ~p~e~~LVLdAt~~~------~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 364 APVKRLLLLNATSHG------DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred CCCeeEEEEeCCCcH------HHHHHHHHHhcc-CCCCEEEEeC
Confidence 68999999887 334555555543 3455445555
No 495
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.56 E-value=0.23 Score=34.27 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=43.8
Q ss_pred HHHHHHHHHh--cCCCeEEEcCCCCC--CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH--HHhcccc
Q psy17960 72 RRVSIAVTLL--HSPDIIVLDEPTSG--VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE--ARQADMR 135 (137)
Q Consensus 72 qrv~ia~al~--~~p~illlDEPt~g--LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~--~~~~d~~ 135 (137)
+-...|+..+ .+.++++|||-... ++....+.+.++|++. ..+..+|++.+++.. +..||-+
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r--p~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK--PEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC--CCCCEEEEECCCCCHHHHHhCcee
Confidence 3444455544 45799999999775 5666778899998764 346899999999854 3346654
No 496
>KOG0250|consensus
Probab=93.54 E-value=0.058 Score=46.84 Aligned_cols=75 Identities=21% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCCCCChHHHHHHHHHHHH----hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEcCCHHHHHhccccc
Q psy17960 62 LCSTLSGGQARRVSIAVTL----LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al----~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~tH~~~~~~~~d~~~ 136 (137)
....||||||-=..++..| +...++..|||=---+|..+++..+++|-+...+.+ ..|+++=||+..+..-|.|.
T Consensus 986 d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~~~i~ 1065 (1074)
T KOG0250|consen 986 DTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSDDGIV 1065 (1074)
T ss_pred cccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhccccceE
Confidence 4578999999766655555 457889999999999999999999999988765544 57888889998887766553
No 497
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=0.25 Score=41.73 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=41.9
Q ss_pred CCCChHHHHHHH---HHHHHhc--------CC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 64 STLSGGQARRVS---IAVTLLH--------SP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 64 ~~LS~G~kqrv~---ia~al~~--------~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
..+|||||++++ +|.+|.. .| ..+||||.|+--|+.....++..++++ |.-.+++|
T Consensus 989 ~g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~~f~~f----glh~v~iT 1057 (1104)
T COG4913 989 QGGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIAAFREF----GLHAVFIT 1057 (1104)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHHHHHHc----CceEEEec
Confidence 569999999986 4555432 23 268999999999999999999998765 44444554
No 498
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=92.91 E-value=0.34 Score=41.13 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred hcCCCeEEEcCCCCCCC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 81 LHSPDIIVLDEPTSGVD-PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
-..|.++++||.-.-++ +...+.+.+.++..++ .|..++++||+++.+..
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK-~~~~~~~~TQ~~~d~~~ 677 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRK-ANGIVVLATQSINDALG 677 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhc
Confidence 34788999999888774 7778888888888875 58899999999987643
No 499
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.71 E-value=0.2 Score=36.88 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=36.9
Q ss_pred HHHHHHHHHh--cCCCeEEEcCCCCCCCH-------H-HHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 72 RRVSIAVTLL--HSPDIIVLDEPTSGVDP-------L-LAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 72 qrv~ia~al~--~~p~illlDEPt~gLD~-------~-~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.-+..++.++ .+|+++++|..+.-.+. . ....+...|+.+.++.++||++++|--
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 3444454444 47999999987654332 1 234566677777777899999999854
No 500
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=91.73 E-value=0.93 Score=36.28 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCeEEEcCC----------CCCCCHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHHHHh
Q psy17960 75 SIAVTLLHSPDIIVLDEP----------TSGVDPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 75 ~ia~al~~~p~illlDEP----------t~gLD~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~~~~ 131 (137)
.+..|....|.++++||- .+|-+....+.+.+++.++. ...+..||++||.++.+..
T Consensus 268 lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 268 LFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred HHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 344455678999999993 45667777777777776652 2346789999999887754
Done!