Query psy17960
Match_columns 137
No_of_seqs 194 out of 1010
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:47:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4E-39 1.4E-43 245.5 16.0 131 7-137 104-236 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 1.6E-38 5.6E-43 243.4 14.9 130 8-137 75-206 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-38 4.6E-43 242.3 13.7 131 7-137 79-211 (359)
4 3tif_A Uncharacterized ABC tra 100.0 1.1E-37 3.7E-42 225.8 14.9 128 9-136 84-216 (235)
5 1z47_A CYSA, putative ABC-tran 100.0 1.1E-37 3.6E-42 237.3 15.4 131 7-137 86-218 (355)
6 2it1_A 362AA long hypothetical 100.0 1.9E-37 6.5E-42 236.5 15.0 131 7-137 74-206 (362)
7 1g29_1 MALK, maltose transport 100.0 2.4E-37 8.2E-42 236.8 15.5 131 7-137 80-212 (372)
8 2pcj_A ABC transporter, lipopr 100.0 4.9E-37 1.7E-41 220.9 15.8 128 8-136 82-210 (224)
9 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-37 4.7E-42 236.7 13.3 131 7-137 81-213 (353)
10 2olj_A Amino acid ABC transpor 100.0 8.3E-37 2.9E-41 224.4 15.8 128 8-136 100-230 (263)
11 2yyz_A Sugar ABC transporter, 100.0 1.8E-37 6.1E-42 236.4 12.4 131 7-137 74-206 (359)
12 3gfo_A Cobalt import ATP-bindi 100.0 2.4E-37 8.1E-42 228.6 12.6 130 8-137 84-216 (275)
13 1v43_A Sugar-binding transport 100.0 2.7E-37 9.2E-42 236.4 11.8 130 8-137 83-214 (372)
14 3d31_A Sulfate/molybdate ABC t 100.0 9.5E-37 3.2E-41 231.6 14.7 127 8-137 72-200 (348)
15 1b0u_A Histidine permease; ABC 100.0 1.4E-36 4.9E-41 223.0 14.6 128 8-136 93-224 (262)
16 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-36 8E-41 221.3 15.2 128 8-136 88-217 (256)
17 2onk_A Molybdate/tungstate ABC 100.0 5.1E-37 1.7E-41 222.9 9.7 128 7-136 69-198 (240)
18 1g6h_A High-affinity branched- 100.0 2E-36 6.7E-41 221.7 10.4 128 8-136 82-224 (257)
19 4g1u_C Hemin import ATP-bindin 100.0 7.2E-36 2.4E-40 219.8 13.1 128 8-137 85-220 (266)
20 2nq2_C Hypothetical ABC transp 100.0 1.9E-35 6.6E-40 216.1 15.2 129 8-136 66-200 (253)
21 1ji0_A ABC transporter; ATP bi 100.0 1.7E-35 5.7E-40 214.9 13.8 127 8-136 81-210 (240)
22 1sgw_A Putative ABC transporte 100.0 1.9E-35 6.4E-40 211.4 10.5 127 7-136 77-204 (214)
23 2yz2_A Putative ABC transporte 100.0 2.9E-35 1E-39 216.5 11.2 127 8-136 78-209 (266)
24 2qi9_C Vitamin B12 import ATP- 100.0 6E-34 2.1E-38 207.7 12.4 123 8-136 73-204 (249)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 6.9E-34 2.4E-38 207.4 9.9 127 9-136 81-215 (250)
26 2ihy_A ABC transporter, ATP-bi 100.0 4.3E-34 1.5E-38 211.5 8.6 128 8-136 97-234 (279)
27 2ixe_A Antigen peptide transpo 100.0 1E-33 3.5E-38 208.7 10.3 127 8-136 93-227 (271)
28 2zu0_C Probable ATP-dependent 100.0 6.3E-33 2.2E-37 204.1 14.2 127 9-136 98-236 (267)
29 2pjz_A Hypothetical protein ST 100.0 2.2E-32 7.6E-37 200.8 10.8 120 7-136 73-197 (263)
30 3nh6_A ATP-binding cassette SU 100.0 1.5E-32 5.1E-37 205.5 8.9 125 8-137 128-260 (306)
31 2ff7_A Alpha-hemolysin translo 100.0 6.1E-32 2.1E-36 196.9 11.3 124 8-136 83-214 (247)
32 1mv5_A LMRA, multidrug resista 100.0 5.9E-32 2E-36 196.5 8.1 122 7-136 75-208 (243)
33 2ghi_A Transport protein; mult 100.0 1.5E-31 5.2E-36 196.1 9.6 124 8-136 93-224 (260)
34 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-30 4.4E-35 207.6 12.2 130 5-137 327-458 (538)
35 3bk7_A ABC transporter ATP-bin 100.0 7.4E-30 2.5E-34 205.6 14.5 125 8-136 417-543 (607)
36 2cbz_A Multidrug resistance-as 100.0 7.2E-31 2.5E-35 190.2 6.9 122 9-136 67-199 (237)
37 2pze_A Cystic fibrosis transme 100.0 1.2E-30 4.2E-35 188.0 7.8 122 9-136 70-200 (229)
38 3gd7_A Fusion complex of cysti 100.0 3.8E-31 1.3E-35 203.4 4.7 120 8-137 94-225 (390)
39 1yqt_A RNAse L inhibitor; ATP- 100.0 7.9E-30 2.7E-34 203.2 12.2 125 8-136 347-473 (538)
40 3b5x_A Lipid A export ATP-bind 100.0 4.8E-30 1.6E-34 205.9 10.0 127 7-137 416-550 (582)
41 3j16_B RLI1P; ribosome recycli 100.0 2.4E-29 8.1E-34 202.6 14.0 126 8-137 413-540 (608)
42 3qf4_A ABC transporter, ATP-bi 100.0 2.5E-30 8.6E-35 207.8 7.6 126 7-137 416-549 (587)
43 2yl4_A ATP-binding cassette SU 100.0 8E-30 2.7E-34 205.1 9.5 126 8-136 418-552 (595)
44 3b60_A Lipid A export ATP-bind 100.0 8.8E-30 3E-34 204.4 9.6 125 8-136 417-549 (582)
45 4a82_A Cystic fibrosis transme 100.0 1.6E-29 5.4E-34 202.9 9.6 125 8-137 415-547 (578)
46 3qf4_B Uncharacterized ABC tra 100.0 1.2E-29 4E-34 204.3 7.5 125 8-137 429-561 (598)
47 2bbs_A Cystic fibrosis transme 100.0 8.8E-29 3E-33 183.9 9.0 121 9-136 100-229 (290)
48 3bk7_A ABC transporter ATP-bin 99.9 5.3E-28 1.8E-32 194.8 10.2 118 9-136 177-299 (607)
49 1yqt_A RNAse L inhibitor; ATP- 99.9 9.2E-28 3.2E-32 191.3 11.2 118 9-136 107-229 (538)
50 4f4c_A Multidrug resistance pr 99.9 1.3E-28 4.4E-33 211.9 5.9 128 7-137 1152-1287(1321)
51 3g5u_A MCG1178, multidrug resi 99.9 4.2E-27 1.5E-31 202.1 11.8 125 8-137 464-596 (1284)
52 3ux8_A Excinuclease ABC, A sub 99.9 8.3E-28 2.9E-32 195.6 6.7 116 20-136 147-274 (670)
53 3g5u_A MCG1178, multidrug resi 99.9 2.6E-27 8.9E-32 203.4 9.6 128 7-137 1106-1241(1284)
54 3ux8_A Excinuclease ABC, A sub 99.9 2.3E-26 7.8E-31 187.1 13.0 109 22-137 504-617 (670)
55 4f4c_A Multidrug resistance pr 99.9 6.4E-27 2.2E-31 201.4 10.1 125 8-137 492-624 (1321)
56 2iw3_A Elongation factor 3A; a 99.9 2.8E-26 9.7E-31 191.6 11.1 117 9-136 496-616 (986)
57 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-26 4.4E-31 184.6 8.5 89 47-137 119-209 (538)
58 3j16_B RLI1P; ribosome recycli 99.9 1.3E-25 4.6E-30 180.8 11.1 92 45-137 200-293 (608)
59 3pih_A Uvrabc system protein A 99.9 3.1E-25 1.1E-29 184.8 13.6 107 23-136 767-878 (916)
60 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 5.5E-25 1.9E-29 149.0 7.4 77 59-136 51-133 (148)
61 2r6f_A Excinuclease ABC subuni 99.9 1.2E-23 4E-28 175.2 13.3 114 20-136 449-576 (972)
62 3pih_A Uvrabc system protein A 99.9 3.9E-24 1.3E-28 178.3 8.5 115 19-136 408-536 (916)
63 2vf7_A UVRA2, excinuclease ABC 99.9 2.4E-23 8.4E-28 172.2 13.1 90 46-136 709-803 (842)
64 2ygr_A Uvrabc system protein A 99.9 1.5E-23 5.3E-28 175.0 10.9 115 19-136 465-593 (993)
65 2r6f_A Excinuclease ABC subuni 99.9 2.3E-23 7.9E-28 173.5 11.9 108 22-136 806-918 (972)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.7E-24 2.3E-28 162.0 7.9 76 60-136 274-355 (365)
67 2ygr_A Uvrabc system protein A 99.9 6.5E-23 2.2E-27 171.2 11.2 107 23-136 825-936 (993)
68 2iw3_A Elongation factor 3A; a 99.9 7.1E-23 2.4E-27 171.3 8.1 89 45-137 878-970 (986)
69 2vf7_A UVRA2, excinuclease ABC 99.9 6E-22 2.1E-26 164.0 12.8 92 43-136 356-451 (842)
70 4aby_A DNA repair protein RECN 99.8 2.2E-21 7.7E-26 149.3 8.8 69 66-136 296-366 (415)
71 3kta_B Chromosome segregation 99.8 6.9E-21 2.4E-25 131.8 9.6 75 60-136 59-137 (173)
72 4ad8_A DNA repair protein RECN 99.8 2.6E-21 9E-26 153.4 7.8 74 61-136 392-468 (517)
73 3qkt_A DNA double-strand break 99.8 4.1E-21 1.4E-25 145.2 7.3 76 60-136 243-324 (339)
74 1e69_A Chromosome segregation 99.8 3.6E-20 1.2E-24 139.0 8.2 75 59-135 213-291 (322)
75 4gp7_A Metallophosphoesterase; 99.8 4.3E-21 1.5E-25 132.2 2.3 72 63-135 81-168 (171)
76 2npi_A Protein CLP1; CLP1-PCF1 99.8 6.3E-22 2.1E-26 155.1 -9.7 119 7-134 178-313 (460)
77 1ye8_A Protein THEP1, hypothet 99.8 6.3E-19 2.2E-23 122.4 5.6 72 59-134 70-152 (178)
78 1w1w_A Structural maintenance 99.7 3.3E-18 1.1E-22 132.7 9.3 76 60-136 328-407 (430)
79 3auy_A DNA double-strand break 99.7 3.8E-18 1.3E-22 130.3 6.6 74 61-136 276-356 (371)
80 3b85_A Phosphate starvation-in 99.7 1.3E-19 4.6E-24 128.7 -3.4 56 69-131 108-163 (208)
81 2o5v_A DNA replication and rep 99.7 7.6E-18 2.6E-22 128.3 3.8 70 60-136 259-338 (359)
82 1znw_A Guanylate kinase, GMP k 99.6 2.1E-20 7.2E-25 132.1 -14.8 119 8-137 64-200 (207)
83 1tq4_A IIGP1, interferon-induc 99.6 1.1E-18 3.8E-23 135.0 -8.8 114 11-135 111-247 (413)
84 1tf7_A KAIC; homohexamer, hexa 99.5 2.7E-15 9.3E-20 119.1 2.4 76 59-136 347-438 (525)
85 3thx_B DNA mismatch repair pro 99.5 4.2E-14 1.4E-18 118.3 7.6 74 60-134 730-804 (918)
86 3thx_A DNA mismatch repair pro 99.4 2.6E-13 8.7E-18 113.8 9.2 77 60-136 716-795 (934)
87 3b9q_A Chloroplast SRP recepto 99.4 3.2E-15 1.1E-19 111.4 -2.7 97 9-124 155-255 (302)
88 3sop_A Neuronal-specific septi 99.4 1E-15 3.6E-20 112.4 -5.8 108 7-129 46-153 (270)
89 3aez_A Pantothenate kinase; tr 99.4 9.1E-16 3.1E-20 114.9 -7.1 111 8-129 121-231 (312)
90 2og2_A Putative signal recogni 99.4 2.5E-14 8.6E-19 108.9 -1.5 98 9-125 212-313 (359)
91 2o8b_B DNA mismatch repair pro 99.4 1.4E-12 4.9E-17 110.3 8.3 74 62-136 848-923 (1022)
92 1nlf_A Regulatory protein REPA 99.3 7.3E-12 2.5E-16 91.8 6.8 78 49-129 101-184 (279)
93 1cr0_A DNA primase/helicase; R 99.3 6E-12 2E-16 92.8 5.9 64 62-126 126-197 (296)
94 2w0m_A SSO2452; RECA, SSPF, un 99.2 1.9E-11 6.4E-16 86.3 5.6 72 65-136 103-187 (235)
95 2pt7_A CAG-ALFA; ATPase, prote 99.2 7.1E-12 2.4E-16 94.4 3.6 61 68-136 225-285 (330)
96 1ewq_A DNA mismatch repair pro 99.1 4.9E-11 1.7E-15 98.4 6.2 66 63-132 633-704 (765)
97 3asz_A Uridine kinase; cytidin 99.1 3.5E-14 1.2E-18 99.8 -12.3 116 9-127 33-162 (211)
98 2jeo_A Uridine-cytidine kinase 99.1 2.7E-11 9.4E-16 87.2 2.1 108 7-129 58-168 (245)
99 2ehv_A Hypothetical protein PH 99.1 5.2E-11 1.8E-15 85.0 3.5 69 67-136 119-203 (251)
100 1wb9_A DNA mismatch repair pro 99.1 1.2E-10 4E-15 96.6 6.0 72 63-135 667-739 (800)
101 1z6g_A Guanylate kinase; struc 99.0 8.9E-13 3E-17 93.7 -7.3 72 64-135 121-204 (218)
102 2qnr_A Septin-2, protein NEDD5 99.0 1.1E-12 3.9E-17 97.5 -8.8 105 8-127 63-168 (301)
103 2dpy_A FLII, flagellum-specifi 99.0 2.8E-12 9.7E-17 99.9 -7.1 104 8-135 213-325 (438)
104 2v9p_A Replication protein E1; 98.9 1.4E-13 4.8E-18 102.7 -15.8 92 10-135 155-248 (305)
105 2cvh_A DNA repair and recombin 98.9 1.4E-09 4.7E-14 76.2 5.4 63 65-127 84-157 (220)
106 3szr_A Interferon-induced GTP- 98.9 1.7E-11 5.7E-16 99.0 -6.9 97 7-129 96-199 (608)
107 2eyu_A Twitching motility prot 98.8 5.4E-09 1.9E-13 76.2 6.0 56 73-136 88-143 (261)
108 1pzn_A RAD51, DNA repair and r 98.8 3.8E-09 1.3E-13 80.0 4.5 64 67-130 208-290 (349)
109 4a74_A DNA repair and recombin 98.8 2E-09 6.8E-14 75.8 2.0 71 66-136 100-195 (231)
110 1rj9_A FTSY, signal recognitio 98.8 1.1E-09 3.7E-14 81.6 0.6 104 9-128 157-260 (304)
111 1tf7_A KAIC; homohexamer, hexa 98.8 9.2E-10 3.1E-14 87.3 0.2 64 72-136 126-205 (525)
112 3jvv_A Twitching mobility prot 98.7 2.1E-08 7.2E-13 76.2 5.6 54 75-136 188-241 (356)
113 2obl_A ESCN; ATPase, hydrolase 98.6 5.1E-09 1.7E-13 79.3 0.0 63 61-135 167-236 (347)
114 1pui_A ENGB, probable GTP-bind 98.5 5E-08 1.7E-12 67.7 2.3 68 47-114 129-199 (210)
115 2i3b_A HCR-ntpase, human cance 98.4 1.1E-08 3.8E-13 71.2 -1.7 50 60-109 78-133 (189)
116 2qag_C Septin-7; cell cycle, c 98.4 4.9E-09 1.7E-13 81.2 -4.6 100 9-128 76-179 (418)
117 3ec2_A DNA replication protein 98.4 1.2E-06 4.1E-11 59.6 7.0 47 80-127 97-144 (180)
118 2bbw_A Adenylate kinase 4, AK4 98.3 4.4E-09 1.5E-13 75.5 -7.2 93 11-112 77-197 (246)
119 1odf_A YGR205W, hypothetical 3 98.3 1.8E-08 6.1E-13 74.5 -4.3 89 9-99 64-168 (290)
120 1s96_A Guanylate kinase, GMP k 98.2 1.5E-08 5E-13 72.1 -5.2 42 80-131 104-145 (219)
121 1sxj_E Activator 1 40 kDa subu 98.1 2.9E-06 1E-10 63.3 4.5 46 80-128 131-176 (354)
122 1n0w_A DNA repair protein RAD5 98.1 6.6E-06 2.2E-10 58.1 5.9 66 65-130 98-178 (243)
123 2kjq_A DNAA-related protein; s 98.0 5.4E-06 1.9E-10 55.3 4.6 45 79-125 79-124 (149)
124 1lw7_A Transcriptional regulat 97.9 1.4E-06 4.6E-11 66.1 0.0 63 63-125 256-328 (365)
125 2ewv_A Twitching motility prot 97.9 1.7E-05 5.8E-10 60.4 5.8 55 73-135 199-253 (372)
126 1nij_A Hypothetical protein YJ 97.7 3.4E-06 1.1E-10 62.9 -0.4 50 65-127 141-190 (318)
127 1udx_A The GTP-binding protein 97.7 6.6E-06 2.3E-10 63.6 0.7 62 60-126 247-309 (416)
128 3lda_A DNA repair protein RAD5 97.6 5.3E-05 1.8E-09 58.3 4.5 45 82-126 272-328 (400)
129 2bdt_A BH3686; alpha-beta prot 97.5 4.5E-07 1.6E-11 62.2 -7.1 64 67-135 96-167 (189)
130 2qag_B Septin-6, protein NEDD5 97.5 1.1E-05 3.8E-10 62.6 -1.2 115 8-126 82-219 (427)
131 2rcn_A Probable GTPase ENGC; Y 97.4 1.5E-05 5.1E-10 60.6 -0.6 69 7-81 260-329 (358)
132 2xau_A PRE-mRNA-splicing facto 97.4 7.4E-05 2.5E-09 61.9 3.1 69 62-131 187-257 (773)
133 2dr3_A UPF0273 protein PH0284; 97.4 0.0002 6.9E-09 50.4 4.8 47 82-128 127-175 (247)
134 2r6a_A DNAB helicase, replicat 97.3 0.0011 3.7E-08 51.5 8.7 60 63-124 293-362 (454)
135 3e70_C DPA, signal recognition 97.2 5.6E-05 1.9E-09 56.7 -0.0 94 10-126 185-279 (328)
136 1in4_A RUVB, holliday junction 97.1 3.9E-05 1.3E-09 57.3 -1.5 102 7-131 102-207 (334)
137 2f1r_A Molybdopterin-guanine d 97.1 6.4E-06 2.2E-10 56.3 -5.6 50 65-114 103-162 (171)
138 2ce7_A Cell division protein F 97.0 0.00097 3.3E-08 52.4 5.6 62 68-129 93-167 (476)
139 3euj_A Chromosome partition pr 97.0 0.0021 7.1E-08 50.6 7.2 59 62-125 376-451 (483)
140 2zr9_A Protein RECA, recombina 97.0 0.0012 4E-08 49.8 5.6 56 72-127 126-199 (349)
141 2ius_A DNA translocase FTSK; n 96.9 1.9E-05 6.3E-10 62.6 -5.4 62 65-127 268-343 (512)
142 1zp6_A Hypothetical protein AT 96.8 0.00016 5.5E-09 49.1 -0.5 54 61-123 105-158 (191)
143 4a1f_A DNAB helicase, replicat 96.7 0.0026 9E-08 47.8 5.6 56 64-124 108-164 (338)
144 2e87_A Hypothetical protein PH 96.7 0.0041 1.4E-07 46.7 6.4 65 60-127 226-293 (357)
145 1ls1_A Signal recognition part 96.5 0.011 3.7E-07 43.4 7.7 54 67-122 164-218 (295)
146 1lw7_A Transcriptional regulat 96.2 0.0023 7.9E-08 48.2 2.8 30 64-93 295-329 (365)
147 2px0_A Flagellar biosynthesis 96.1 0.0057 1.9E-07 45.0 4.4 60 72-135 173-236 (296)
148 1vma_A Cell division protein F 96.1 0.0032 1.1E-07 46.6 2.9 43 48-94 152-197 (306)
149 2yv5_A YJEQ protein; hydrolase 96.1 9.7E-05 3.3E-09 54.6 -5.6 69 9-78 216-300 (302)
150 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.00012 4.1E-09 56.2 -6.8 50 83-135 139-192 (392)
151 2yhs_A FTSY, cell division pro 95.3 0.0044 1.5E-07 49.0 1.0 99 8-124 347-447 (503)
152 1oix_A RAS-related protein RAB 95.0 0.012 4.1E-07 39.8 2.4 37 72-110 152-188 (191)
153 2gza_A Type IV secretion syste 94.8 0.018 6.1E-07 43.4 3.1 61 68-136 237-297 (361)
154 2z4s_A Chromosomal replication 94.8 0.05 1.7E-06 42.0 5.6 42 83-125 194-236 (440)
155 3b9p_A CG5977-PA, isoform A; A 94.4 0.096 3.3E-06 37.7 6.2 61 67-127 97-170 (297)
156 2oap_1 GSPE-2, type II secreti 94.4 7.8E-06 2.7E-10 64.8 -16.9 57 64-133 399-458 (511)
157 3bh0_A DNAB-like replicative h 94.4 0.063 2.1E-06 39.6 5.1 55 66-125 134-190 (315)
158 1fnn_A CDC6P, cell division co 93.6 0.19 6.6E-06 37.1 6.5 49 82-131 124-174 (389)
159 2qm8_A GTPase/ATPase; G protei 93.5 0.032 1.1E-06 41.7 2.0 47 63-113 208-260 (337)
160 1p9r_A General secretion pathw 93.0 0.00023 7.8E-09 55.1 -10.5 70 15-88 235-314 (418)
161 2f9l_A RAB11B, member RAS onco 92.9 0.059 2E-06 36.4 2.5 36 74-111 130-165 (199)
162 1lvg_A Guanylate kinase, GMP k 92.7 0.0035 1.2E-07 43.2 -3.9 55 76-130 116-178 (198)
163 1g5t_A COB(I)alamin adenosyltr 92.2 0.093 3.2E-06 36.4 2.8 63 71-135 106-174 (196)
164 2z43_A DNA repair and recombin 92.0 0.13 4.4E-06 38.0 3.6 57 72-128 189-260 (324)
165 2eyu_A Twitching motility prot 91.3 5.4E-05 1.9E-09 54.9 -15.1 57 65-125 172-239 (261)
166 1v5w_A DMC1, meiotic recombina 91.2 0.24 8.3E-06 36.9 4.4 58 72-129 204-277 (343)
167 3szr_A Interferon-induced GTP- 90.7 0.17 5.9E-06 40.7 3.3 61 63-124 162-223 (608)
168 2x8a_A Nuclear valosin-contain 90.7 0.00062 2.1E-08 49.5 -10.0 47 60-108 132-190 (274)
169 2ewv_A Twitching motility prot 89.8 0.00014 4.8E-09 55.3 -14.6 57 66-126 284-351 (372)
170 1b9m_A Protein (mode); DNA-bin 89.2 0.054 1.9E-06 38.6 -0.7 49 37-85 45-93 (265)
171 3k1j_A LON protease, ATP-depen 88.8 0.079 2.7E-06 42.5 -0.1 46 64-110 182-227 (604)
172 1u94_A RECA protein, recombina 88.6 1.2 4E-05 33.5 6.3 57 72-128 128-202 (356)
173 3c8u_A Fructokinase; YP_612366 88.4 0.0017 5.7E-08 45.0 -8.9 30 64-93 110-140 (208)
174 3hr8_A Protein RECA; alpha and 88.1 2.4 8.1E-05 31.9 7.7 54 72-125 126-197 (356)
175 4ag6_A VIRB4 ATPase, type IV s 87.9 0.59 2E-05 35.1 4.3 48 82-130 261-311 (392)
176 1jcn_A Inosine monophosphate d 87.8 0.0047 1.6E-07 48.7 -7.7 46 78-129 28-73 (514)
177 2qby_A CDC6 homolog 1, cell di 86.8 0.28 9.6E-06 36.1 1.9 46 83-129 128-176 (386)
178 2w58_A DNAI, primosome compone 86.3 0.5 1.7E-05 31.8 2.9 50 81-130 113-164 (202)
179 1l8q_A Chromosomal replication 85.7 1.4 4.7E-05 32.0 5.2 43 81-124 96-139 (324)
180 1ega_A Protein (GTP-binding pr 84.7 0.72 2.5E-05 33.6 3.2 59 66-131 101-164 (301)
181 2q6t_A DNAB replication FORK h 84.7 4.1 0.00014 31.2 7.6 59 65-125 292-362 (444)
182 1sxj_D Activator 1 41 kDa subu 83.8 1.3 4.5E-05 32.2 4.3 42 83-127 133-174 (353)
183 1njg_A DNA polymerase III subu 83.5 0.95 3.2E-05 30.5 3.3 42 83-127 126-167 (250)
184 3h4m_A Proteasome-activating n 83.1 1.6 5.5E-05 30.9 4.5 57 73-129 100-169 (285)
185 3bos_A Putative DNA replicatio 82.9 1.2 4.2E-05 30.2 3.7 44 81-124 102-146 (242)
186 3t34_A Dynamin-related protein 82.7 0.97 3.3E-05 33.6 3.3 59 65-124 154-212 (360)
187 3cf0_A Transitional endoplasmi 81.7 3 0.0001 30.1 5.5 57 73-129 98-167 (301)
188 1xp8_A RECA protein, recombina 80.6 8.3 0.00028 28.9 7.8 56 72-127 139-212 (366)
189 2q6t_A DNAB replication FORK h 79.7 12 0.00041 28.5 8.6 55 64-123 263-317 (444)
190 2r8r_A Sensor protein; KDPD, P 78.4 1.1 3.9E-05 31.6 2.2 47 77-124 78-125 (228)
191 2qtf_A Protein HFLX, GTP-bindi 78.4 1.3 4.5E-05 33.2 2.7 48 62-113 301-353 (364)
192 1u0l_A Probable GTPase ENGC; p 77.5 0.029 9.9E-07 41.1 -6.5 56 9-68 221-294 (301)
193 2i1q_A DNA repair and recombin 75.8 2.5 8.7E-05 30.7 3.6 52 74-125 192-258 (322)
194 2b8t_A Thymidine kinase; deoxy 75.1 4.3 0.00015 28.3 4.5 37 83-125 89-125 (223)
195 4dgh_A Sulfate permease family 74.3 13 0.00044 23.0 7.4 47 81-128 46-93 (130)
196 3d8b_A Fidgetin-like protein 1 73.4 8.8 0.0003 28.3 6.1 57 72-128 165-233 (357)
197 2qgz_A Helicase loader, putati 72.6 3.1 0.00011 30.3 3.4 49 81-130 212-263 (308)
198 2chg_A Replication factor C sm 70.6 6.3 0.00022 25.9 4.4 43 82-127 101-143 (226)
199 1t9h_A YLOQ, probable GTPase E 70.4 0.21 7.2E-06 36.9 -3.4 62 10-72 225-302 (307)
200 1jjv_A Dephospho-COA kinase; P 70.1 0.2 7E-06 33.9 -3.3 64 67-135 61-127 (206)
201 1ypw_A Transitional endoplasmi 69.6 4.5 0.00015 33.6 4.0 58 72-129 286-353 (806)
202 4dgf_A Sulfate transporter sul 69.0 18 0.00062 22.5 7.1 46 82-128 50-96 (135)
203 3kl4_A SRP54, signal recogniti 68.6 7.8 0.00027 29.9 5.0 52 73-125 169-223 (433)
204 3oiz_A Antisigma-factor antago 68.1 6.7 0.00023 23.3 3.7 41 82-123 42-83 (99)
205 3hu3_A Transitional endoplasmi 68.1 6.9 0.00024 30.6 4.6 55 74-128 288-352 (489)
206 1zxx_A 6-phosphofructokinase; 67.6 17 0.00058 26.9 6.4 51 68-124 170-222 (319)
207 3ny7_A YCHM protein, sulfate t 67.2 15 0.00053 22.4 5.4 45 82-128 44-89 (118)
208 1pfk_A Phosphofructokinase; tr 65.9 19 0.00065 26.6 6.4 47 72-124 175-223 (320)
209 3o63_A Probable thiamine-phosp 65.9 24 0.00081 24.9 6.7 53 77-130 50-109 (243)
210 2orv_A Thymidine kinase; TP4A 65.0 9.9 0.00034 26.9 4.5 37 82-125 89-125 (234)
211 1x52_A Pelota homolog, CGI-17; 64.9 7.6 0.00026 24.6 3.6 42 86-128 58-99 (124)
212 3io5_A Recombination and repai 64.2 27 0.00091 26.1 6.9 60 68-127 92-173 (333)
213 3bt7_A TRNA (uracil-5-)-methyl 64.2 10 0.00036 28.1 4.8 39 83-130 295-333 (369)
214 2qz4_A Paraplegin; AAA+, SPG7, 64.1 24 0.00081 24.1 6.4 57 73-129 88-158 (262)
215 1q57_A DNA primase/helicase; d 63.9 25 0.00084 27.2 7.1 53 74-126 343-404 (503)
216 3bgw_A DNAB-like replicative h 63.7 10 0.00034 29.2 4.7 53 66-123 263-317 (444)
217 1jr3_A DNA polymerase III subu 62.7 5.7 0.0002 28.9 3.1 43 82-127 118-160 (373)
218 3llo_A Prestin; STAS domain, c 62.5 26 0.00087 21.9 7.3 46 82-128 62-108 (143)
219 3f6p_A Transcriptional regulat 61.5 22 0.00075 20.9 5.3 41 80-126 43-84 (120)
220 3llm_A ATP-dependent RNA helic 61.2 19 0.00067 24.5 5.5 59 67-128 162-222 (235)
221 1jr3_D DNA polymerase III, del 60.2 8.6 0.0003 28.0 3.7 48 76-125 69-116 (343)
222 3u61_B DNA polymerase accessor 59.7 14 0.00047 26.5 4.7 42 83-127 105-147 (324)
223 4fcw_A Chaperone protein CLPB; 59.3 14 0.00049 26.1 4.7 50 75-125 110-169 (311)
224 3co5_A Putative two-component 58.9 22 0.00076 22.2 5.1 40 83-124 75-114 (143)
225 2hqs_H Peptidoglycan-associate 57.2 20 0.00068 22.0 4.5 45 81-125 2-46 (118)
226 1xx6_A Thymidine kinase; NESG, 55.7 18 0.00063 24.3 4.5 38 83-126 81-118 (191)
227 1iy2_A ATP-dependent metallopr 55.6 0.06 2.1E-06 38.6 -8.6 42 64-107 168-221 (278)
228 3bh0_A DNAB-like replicative h 55.5 13 0.00044 27.0 3.9 44 82-125 178-230 (315)
229 2v1u_A Cell division control p 55.2 8.3 0.00028 28.0 2.9 44 83-126 130-177 (387)
230 4b4t_J 26S protease regulatory 55.1 28 0.00096 26.6 5.8 57 73-129 231-300 (405)
231 2vhj_A Ntpase P4, P4; non- hyd 54.4 39 0.0013 25.1 6.3 56 69-125 168-235 (331)
232 4b4t_L 26S protease subunit RP 53.8 49 0.0017 25.5 7.1 59 71-129 262-333 (437)
233 1iqp_A RFCS; clamp loader, ext 53.5 17 0.0006 25.6 4.3 43 82-127 109-151 (327)
234 2orw_A Thymidine kinase; TMTK, 51.4 8.3 0.00028 25.7 2.1 39 83-127 76-114 (184)
235 3i42_A Response regulator rece 51.4 35 0.0012 20.0 5.4 41 81-124 45-85 (127)
236 2dy1_A Elongation factor G; tr 51.2 28 0.00096 28.2 5.5 45 79-129 95-139 (665)
237 3lnc_A Guanylate kinase, GMP k 50.6 1.5 5E-05 30.3 -1.8 52 80-131 145-200 (231)
238 4b4t_K 26S protease regulatory 50.5 39 0.0013 25.9 6.0 56 73-128 255-323 (428)
239 2p65_A Hypothetical protein PF 50.4 2.7 9.2E-05 27.1 -0.5 46 82-127 114-163 (187)
240 1ixz_A ATP-dependent metallopr 49.9 0.06 2E-06 38.0 -9.3 42 64-107 144-197 (254)
241 4b4t_M 26S protease regulatory 49.6 35 0.0012 26.3 5.6 59 71-129 262-333 (434)
242 2kln_A Probable sulphate-trans 49.2 29 0.001 21.3 4.4 43 83-126 47-90 (130)
243 3eie_A Vacuolar protein sortin 48.5 55 0.0019 23.4 6.4 56 73-128 100-166 (322)
244 2jjq_A Uncharacterized RNA met 48.5 48 0.0016 25.2 6.2 42 83-131 353-394 (425)
245 1sxj_B Activator 1 37 kDa subu 48.3 15 0.00053 25.9 3.3 42 83-127 107-148 (323)
246 3t8y_A CHEB, chemotaxis respon 47.1 50 0.0017 20.6 5.9 40 81-125 69-108 (164)
247 1a5t_A Delta prime, HOLB; zinc 47.0 13 0.00045 27.1 2.8 43 82-127 107-149 (334)
248 2a9o_A Response regulator; ess 47.0 40 0.0014 19.4 5.8 39 82-125 44-82 (120)
249 1d2n_A N-ethylmaleimide-sensit 46.6 36 0.0012 23.6 5.0 57 75-131 116-182 (272)
250 2qp9_X Vacuolar protein sortin 46.4 50 0.0017 24.2 6.0 55 73-127 133-198 (355)
251 3cmw_A Protein RECA, recombina 46.2 62 0.0021 29.6 7.2 53 73-125 798-868 (1706)
252 3gt7_A Sensor protein; structu 46.0 50 0.0017 20.3 5.6 27 81-110 49-75 (154)
253 3lte_A Response regulator; str 45.9 44 0.0015 19.7 5.7 41 81-124 48-88 (132)
254 2qzj_A Two-component response 45.7 37 0.0013 20.4 4.5 18 81-98 46-63 (136)
255 2gno_A DNA polymerase III, gam 45.7 13 0.00045 26.9 2.6 42 83-127 82-123 (305)
256 3syl_A Protein CBBX; photosynt 45.5 75 0.0026 22.2 6.7 41 83-125 130-178 (309)
257 3q6v_A Beta-lactamase; metallo 45.5 37 0.0013 22.7 4.8 38 84-125 35-72 (233)
258 3gl9_A Response regulator; bet 45.4 45 0.0015 19.6 5.1 19 80-98 43-61 (122)
259 1lv7_A FTSH; alpha/beta domain 45.2 52 0.0018 22.5 5.6 56 74-129 95-163 (257)
260 1zgz_A Torcad operon transcrip 44.8 44 0.0015 19.3 6.7 37 81-123 44-80 (122)
261 1e9r_A Conjugal transfer prote 44.3 13 0.00043 28.1 2.4 44 84-131 280-323 (437)
262 3nhm_A Response regulator; pro 44.2 48 0.0016 19.5 6.1 42 81-125 45-87 (133)
263 2ka5_A Putative anti-sigma fac 44.2 52 0.0018 20.0 7.2 46 80-126 48-94 (125)
264 2dpm_A M.dpnii 1, protein (ade 44.1 67 0.0023 23.0 6.2 47 84-131 188-248 (284)
265 4b4t_I 26S protease regulatory 44.0 36 0.0012 26.3 4.9 59 72-130 264-335 (437)
266 3t15_A Ribulose bisphosphate c 43.9 48 0.0016 23.5 5.4 47 81-127 97-166 (293)
267 3grc_A Sensor protein, kinase; 43.8 50 0.0017 19.7 6.8 44 81-127 48-91 (140)
268 1ixk_A Methyltransferase; open 43.5 28 0.00096 25.1 4.1 43 83-126 187-249 (315)
269 2hig_A 6-phospho-1-fructokinas 43.0 35 0.0012 26.8 4.7 53 68-125 273-326 (487)
270 3v2d_F 50S ribosomal protein L 42.3 58 0.002 22.5 5.3 55 72-128 106-163 (210)
271 3cmw_A Protein RECA, recombina 42.2 1E+02 0.0035 28.2 8.0 52 75-126 451-520 (1706)
272 4b4t_H 26S protease regulatory 42.0 66 0.0023 25.1 6.1 58 71-128 290-360 (467)
273 1mb3_A Cell division response 41.9 50 0.0017 19.1 5.1 26 82-110 44-69 (124)
274 2aiz_P Outer membrane protein 41.6 63 0.0022 20.2 5.7 46 80-125 25-70 (134)
275 1jql_B DNA polymerase III, del 41.5 21 0.00072 22.5 2.8 47 77-125 70-116 (140)
276 2zts_A Putative uncharacterize 41.2 26 0.00089 23.6 3.5 47 80-126 132-182 (251)
277 4eyb_A Beta-lactamase NDM-1; m 41.0 61 0.0021 22.6 5.5 39 83-125 83-121 (270)
278 3lxx_A GTPase IMAP family memb 40.7 69 0.0024 21.6 5.7 44 81-124 110-154 (239)
279 3t6k_A Response regulator rece 40.6 58 0.002 19.5 6.1 42 81-125 46-88 (136)
280 1xhf_A DYE resistance, aerobic 40.5 53 0.0018 19.0 6.5 39 81-125 45-84 (123)
281 3cf2_A TER ATPase, transitiona 40.2 43 0.0015 28.0 5.1 58 72-129 286-353 (806)
282 3cmu_A Protein RECA, recombina 39.8 81 0.0028 29.4 7.0 54 75-128 800-871 (2050)
283 3c3m_A Response regulator rece 39.7 60 0.002 19.4 6.1 27 81-110 45-71 (138)
284 4a1f_A DNAB helicase, replicat 39.2 50 0.0017 24.4 4.9 64 65-130 137-210 (338)
285 1sq5_A Pantothenate kinase; P- 39.2 1.1 3.7E-05 32.7 -4.2 19 79-97 180-198 (308)
286 2j48_A Two-component sensor ki 38.9 53 0.0018 18.5 5.0 26 82-110 44-69 (119)
287 1xwi_A SKD1 protein; VPS4B, AA 38.8 1.1E+02 0.0037 22.0 6.9 56 72-127 94-160 (322)
288 3kyj_B CHEY6 protein, putative 38.7 41 0.0014 20.4 3.9 15 83-97 60-74 (145)
289 3k7i_B IHH, HHG-2, indian hedg 38.6 10 0.00034 25.8 0.9 31 81-111 69-99 (187)
290 1ujc_A Phosphohistidine phosph 38.2 32 0.0011 22.0 3.4 26 102-127 86-111 (161)
291 3ajd_A Putative methyltransfer 38.2 15 0.00051 25.9 1.9 43 83-126 156-214 (274)
292 1jbe_A Chemotaxis protein CHEY 37.9 60 0.0021 18.9 5.3 18 81-98 47-64 (128)
293 1zh2_A KDP operon transcriptio 37.6 54 0.0019 18.8 4.2 40 81-126 43-83 (121)
294 3n70_A Transport activator; si 37.3 68 0.0023 19.8 4.8 43 83-128 76-119 (145)
295 1svm_A Large T antigen; AAA+ f 37.2 0.33 1.1E-05 36.8 -7.4 35 60-94 277-312 (377)
296 2r6a_A DNAB helicase, replicat 37.1 1.3E+02 0.0043 22.8 7.1 54 64-122 266-319 (454)
297 1p6q_A CHEY2; chemotaxis, sign 36.9 63 0.0022 18.8 5.1 18 81-98 49-66 (129)
298 1ne7_A Glucosamine-6-phosphate 36.8 23 0.0008 25.4 2.7 43 66-108 202-259 (289)
299 3bgw_A DNAB-like replicative h 36.8 89 0.003 23.8 6.1 45 82-126 307-360 (444)
300 2qv0_A Protein MRKE; structura 36.6 68 0.0023 19.1 5.5 16 82-97 54-69 (143)
301 1s8n_A Putative antiterminator 36.2 87 0.003 20.2 5.7 40 82-126 57-96 (205)
302 3lua_A Response regulator rece 36.1 69 0.0024 19.1 5.5 42 82-125 49-91 (140)
303 3n53_A Response regulator rece 35.9 40 0.0014 20.2 3.5 16 82-97 45-60 (140)
304 3vfd_A Spastin; ATPase, microt 35.6 91 0.0031 22.9 6.0 55 74-128 198-264 (389)
305 3iog_A Beta-lactamase; hydrola 35.5 45 0.0016 22.1 4.0 37 85-125 33-69 (227)
306 2g1p_A DNA adenine methylase; 35.5 79 0.0027 22.5 5.4 47 84-131 175-235 (278)
307 3k53_A Ferrous iron transport 35.4 6.1 0.00021 27.9 -0.6 43 92-134 144-187 (271)
308 1k68_A Phytochrome response re 35.0 69 0.0024 18.8 4.5 41 82-125 54-95 (140)
309 2zay_A Response regulator rece 34.9 74 0.0025 19.1 5.3 26 82-110 51-76 (147)
310 4a3s_A 6-phosphofructokinase; 34.7 66 0.0023 23.6 4.9 47 73-124 175-222 (319)
311 3heb_A Response regulator rece 34.5 51 0.0018 20.1 3.9 42 81-125 57-99 (152)
312 2vo9_A EAD500, L-alanyl-D-glut 34.5 54 0.0019 21.9 4.1 30 93-123 30-59 (179)
313 3td3_A Outer membrane protein 34.2 69 0.0023 19.5 4.4 40 86-125 15-54 (123)
314 1qvr_A CLPB protein; coiled co 34.2 30 0.001 28.7 3.3 42 83-125 660-710 (854)
315 3r7a_A Phosphoglycerate mutase 34.2 46 0.0016 22.6 3.8 26 102-127 156-185 (237)
316 3tsm_A IGPS, indole-3-glycerol 34.1 1.3E+02 0.0044 21.5 7.5 51 76-132 135-185 (272)
317 1hqc_A RUVB; extended AAA-ATPa 34.1 89 0.003 21.9 5.5 29 82-111 89-117 (324)
318 1th8_B Anti-sigma F factor ant 34.1 71 0.0024 18.6 5.6 50 77-127 35-86 (116)
319 3mca_B Protein DOM34, elongati 33.9 80 0.0027 23.8 5.4 40 85-125 310-349 (390)
320 1jbk_A CLPB protein; beta barr 33.5 13 0.00046 23.6 0.9 46 82-127 114-162 (195)
321 2j9r_A Thymidine kinase; TK1, 33.4 29 0.00099 24.0 2.6 38 83-126 101-138 (214)
322 3kht_A Response regulator; PSI 33.4 61 0.0021 19.4 4.0 18 81-98 49-66 (144)
323 3m4x_A NOL1/NOP2/SUN family pr 33.2 32 0.0011 26.6 3.1 16 82-97 174-189 (456)
324 3hjg_A Putative alpha-ribazole 32.9 44 0.0015 22.5 3.5 28 100-127 125-152 (213)
325 3q9s_A DNA-binding response re 32.7 57 0.0019 22.3 4.2 40 80-125 78-118 (249)
326 2a6p_A Possible phosphoglycera 32.6 44 0.0015 22.4 3.5 28 101-128 128-156 (208)
327 3cu5_A Two component transcrip 32.5 83 0.0028 18.9 6.1 39 81-124 47-85 (141)
328 1h2e_A Phosphatase, YHFR; hydr 32.5 54 0.0018 21.9 3.9 27 101-127 126-153 (207)
329 1uwv_A 23S rRNA (uracil-5-)-me 32.4 88 0.003 23.6 5.5 41 83-131 356-396 (433)
330 1i3c_A Response regulator RCP1 32.4 85 0.0029 19.0 4.8 41 82-125 60-101 (149)
331 1dz3_A Stage 0 sporulation pro 32.4 77 0.0026 18.5 6.4 40 82-125 47-87 (130)
332 1tmy_A CHEY protein, TMY; chem 32.3 73 0.0025 18.2 5.8 40 82-125 46-85 (120)
333 1sxj_C Activator 1 40 kDa subu 31.5 62 0.0021 23.3 4.3 43 82-127 109-151 (340)
334 1gml_A T-complex protein 1 sub 31.4 93 0.0032 20.5 4.9 48 81-129 25-91 (178)
335 4h3d_A 3-dehydroquinate dehydr 31.4 35 0.0012 24.2 2.9 58 62-126 90-149 (258)
336 2wji_A Ferrous iron transport 30.9 88 0.003 19.5 4.6 27 104-131 97-123 (165)
337 3f6c_A Positive transcription 30.8 83 0.0028 18.4 6.2 39 82-125 45-83 (134)
338 1ojl_A Transcriptional regulat 30.8 84 0.0029 22.4 4.9 42 83-125 96-146 (304)
339 1fs5_A Glucosamine-6-phosphate 30.7 25 0.00084 24.8 2.0 37 65-101 201-252 (266)
340 2i4r_A V-type ATP synthase sub 30.6 53 0.0018 19.8 3.3 27 100-126 37-63 (102)
341 2gwr_A DNA-binding response re 30.6 1.2E+02 0.0041 20.2 5.7 17 82-98 48-64 (238)
342 3n1g_B Desert hedgehog protein 30.5 68 0.0023 21.4 4.0 41 83-123 63-108 (170)
343 3to5_A CHEY homolog; alpha(5)b 30.3 1E+02 0.0034 19.2 5.6 76 42-127 23-99 (134)
344 3ilx_A First ORF in transposon 30.1 1.1E+02 0.0036 19.4 5.1 28 83-112 33-60 (143)
345 3d4i_A STS-2 protein; PGM, 2H- 29.8 64 0.0022 22.4 4.1 27 101-127 176-205 (273)
346 3mbk_A Ubiquitin-associated an 29.8 65 0.0022 22.3 4.1 27 102-128 168-197 (264)
347 2oqr_A Sensory transduction pr 29.6 1.2E+02 0.0041 19.9 6.1 38 82-125 47-84 (230)
348 3m0z_A Putative aldolase; MCSG 29.6 13 0.00044 26.4 0.3 63 43-111 147-211 (249)
349 1xp2_A EAD500, PLY500, L-alany 29.4 77 0.0026 21.4 4.1 29 93-122 30-58 (179)
350 3cmu_A Protein RECA, recombina 29.4 1.6E+02 0.0056 27.5 7.2 54 73-126 449-520 (2050)
351 3cnb_A DNA-binding response re 29.2 92 0.0031 18.4 6.1 39 82-123 53-91 (143)
352 3hdv_A Response regulator; PSI 28.9 92 0.0032 18.3 5.4 17 82-98 50-67 (136)
353 1a6d_A Thermosome (alpha subun 28.8 52 0.0018 26.0 3.7 48 81-129 231-297 (545)
354 3hno_A Pyrophosphate-dependent 28.8 35 0.0012 26.2 2.6 46 73-123 196-246 (419)
355 3o6c_A PNP synthase, pyridoxin 28.7 92 0.0031 22.3 4.6 55 76-132 79-141 (260)
356 2qai_A V-type ATP synthase sub 28.7 61 0.0021 19.9 3.3 30 99-128 31-60 (111)
357 3m6y_A 4-hydroxy-2-oxoglutarat 28.6 14 0.00047 26.6 0.3 63 43-110 170-233 (275)
358 2jk1_A HUPR, hydrogenase trans 28.5 96 0.0033 18.4 5.7 41 81-125 42-82 (139)
359 3tr0_A Guanylate kinase, GMP k 28.3 0.97 3.3E-05 30.3 -5.6 22 8-29 51-72 (205)
360 2qvg_A Two component response 28.3 97 0.0033 18.3 5.9 17 82-98 58-74 (143)
361 3c7t_A Ecdysteroid-phosphate p 28.2 55 0.0019 22.6 3.5 26 102-127 167-195 (263)
362 3cg4_A Response regulator rece 28.1 97 0.0033 18.3 6.0 41 81-124 49-89 (142)
363 3ilh_A Two component response 28.1 98 0.0033 18.3 6.6 26 82-110 59-84 (146)
364 2www_A Methylmalonic aciduria 28.0 29 0.00098 25.6 2.0 54 68-130 229-290 (349)
365 1fzt_A Phosphoglycerate mutase 27.8 47 0.0016 22.2 3.0 27 101-127 137-166 (211)
366 2chq_A Replication factor C sm 27.5 12 0.0004 26.5 -0.2 43 82-127 101-143 (319)
367 2rjn_A Response regulator rece 27.5 1.1E+02 0.0036 18.6 6.1 40 81-125 49-88 (154)
368 1we3_A CPN60(groel); chaperoni 27.2 35 0.0012 27.0 2.5 43 81-129 213-255 (543)
369 3h5i_A Response regulator/sens 27.1 1E+02 0.0035 18.3 6.1 39 82-125 49-88 (140)
370 1qhf_A Protein (phosphoglycera 27.1 61 0.0021 22.1 3.5 27 101-127 155-184 (240)
371 1sbo_A Putative anti-sigma fac 27.0 94 0.0032 17.8 8.1 49 78-127 37-87 (110)
372 3cwo_X Beta/alpha-barrel prote 26.9 1.4E+02 0.0046 19.6 5.4 28 82-112 24-51 (237)
373 2kgw_A Outer membrane protein 26.9 1E+02 0.0035 18.9 4.3 40 86-125 25-64 (129)
374 3eod_A Protein HNR; response r 26.9 98 0.0034 18.0 5.1 42 80-125 48-89 (130)
375 2jba_A Phosphate regulon trans 26.7 45 0.0015 19.4 2.5 42 82-126 45-87 (127)
376 3q58_A N-acetylmannosamine-6-p 26.6 1.4E+02 0.0047 20.6 5.2 50 78-132 96-145 (229)
377 3rrv_A Enoyl-COA hydratase/iso 26.4 1.2E+02 0.0039 21.5 4.9 38 86-123 40-80 (276)
378 1dbw_A Transcriptional regulat 26.4 1E+02 0.0034 17.9 5.8 40 81-125 45-85 (126)
379 3oon_A Outer membrane protein 26.3 92 0.0032 18.8 3.9 39 87-125 19-57 (123)
380 4a8j_C Elongator complex prote 26.2 1.5E+02 0.005 21.5 5.3 44 82-127 148-197 (280)
381 1mvo_A PHOP response regulator 26.1 1E+02 0.0036 18.0 6.4 40 82-125 46-85 (136)
382 2f6q_A Peroxisomal 3,2-trans-e 25.8 1.3E+02 0.0044 21.3 5.1 37 86-123 38-76 (280)
383 3eul_A Possible nitrate/nitrit 25.6 1.2E+02 0.004 18.3 6.3 39 82-125 60-99 (152)
384 1a6d_B Thermosome (beta subuni 25.6 79 0.0027 24.9 4.2 48 81-129 232-298 (543)
385 1htw_A HI0065; nucleotide-bind 25.5 16 0.00055 23.7 0.2 19 12-31 79-97 (158)
386 3pxi_A Negative regulator of g 25.3 1.2E+02 0.004 24.7 5.3 41 83-124 579-628 (758)
387 1e58_A Phosphoglycerate mutase 25.1 74 0.0025 21.7 3.6 27 101-127 157-186 (249)
388 2kpt_A Putative secreted prote 25.0 1.1E+02 0.0038 19.6 4.2 39 87-126 16-55 (148)
389 3r9t_A ECHA1_1; ssgcid, seattl 24.8 1.5E+02 0.0051 20.8 5.2 37 86-122 21-60 (267)
390 3a10_A Response regulator; pho 24.7 1E+02 0.0035 17.4 6.5 41 81-125 43-83 (116)
391 2r25_B Osmosensing histidine p 24.7 1.1E+02 0.0039 18.0 6.8 41 82-125 51-91 (133)
392 3gp3_A 2,3-bisphosphoglycerate 24.6 62 0.0021 22.3 3.2 26 102-127 165-193 (257)
393 2bjv_A PSP operon transcriptio 24.6 98 0.0033 21.2 4.2 42 83-125 100-150 (265)
394 1k66_A Phytochrome response re 24.6 1.2E+02 0.004 18.0 4.6 17 82-98 61-77 (149)
395 3rsi_A Putative enoyl-COA hydr 24.5 1.3E+02 0.0046 20.9 5.0 38 86-123 21-61 (265)
396 1srr_A SPO0F, sporulation resp 24.4 1.1E+02 0.0037 17.6 6.4 40 81-125 45-85 (124)
397 3tlf_A Enoyl-COA hydratase/iso 24.4 1.3E+02 0.0045 21.1 4.9 38 86-123 23-63 (274)
398 1mj3_A Enoyl-COA hydratase, mi 24.4 1.5E+02 0.0052 20.6 5.2 36 87-122 20-58 (260)
399 2hhj_A Bisphosphoglycerate mut 24.3 63 0.0021 22.5 3.2 27 101-127 162-191 (267)
400 2zan_A Vacuolar protein sortin 24.2 63 0.0022 24.5 3.4 54 75-128 219-283 (444)
401 2a7k_A CARB; crotonase, antibi 24.2 1.6E+02 0.0055 20.2 5.3 37 87-123 13-52 (250)
402 3p9d_A T-complex protein 1 sub 24.1 90 0.0031 24.7 4.3 45 83-128 241-304 (559)
403 3b2n_A Uncharacterized protein 24.0 1.2E+02 0.004 17.8 6.3 39 82-125 48-87 (133)
404 4e7p_A Response regulator; DNA 23.9 1.3E+02 0.0043 18.2 6.3 40 81-125 64-104 (150)
405 3p9d_G T-complex protein 1 sub 23.9 1.4E+02 0.0047 23.6 5.3 47 81-128 236-301 (550)
406 3qja_A IGPS, indole-3-glycerol 23.9 2E+02 0.0067 20.4 6.1 50 76-132 128-178 (272)
407 1nzy_A Dehalogenase, 4-chlorob 23.8 1.6E+02 0.0054 20.6 5.2 38 86-123 15-55 (269)
408 2pbp_A Enoyl-COA hydratase sub 23.7 1.6E+02 0.0056 20.3 5.3 38 86-123 17-57 (258)
409 1mqo_A Beta-lactamase II; alph 23.7 1.6E+02 0.0056 19.4 5.2 41 84-128 50-91 (227)
410 3fdu_A Putative enoyl-COA hydr 23.7 1.6E+02 0.0055 20.6 5.2 38 86-123 17-57 (266)
411 3igs_A N-acetylmannosamine-6-p 23.6 1.7E+02 0.0057 20.2 5.2 50 78-132 96-145 (232)
412 2ej5_A Enoyl-COA hydratase sub 23.4 1.6E+02 0.0056 20.3 5.2 38 86-123 15-55 (257)
413 1qo0_D AMIR; binding protein, 23.3 97 0.0033 19.8 3.8 38 82-125 51-89 (196)
414 3l3s_A Enoyl-COA hydratase/iso 23.3 1.9E+02 0.0065 20.1 5.5 38 86-123 19-58 (263)
415 3nl6_A Thiamine biosynthetic b 23.2 1.7E+02 0.0057 23.2 5.6 18 115-132 107-124 (540)
416 3i47_A Enoyl COA hydratase/iso 23.1 1.8E+02 0.0061 20.4 5.4 38 86-123 16-56 (268)
417 3gow_A PAAG, probable enoyl-CO 23.0 1.5E+02 0.0051 20.5 4.9 38 86-123 12-52 (254)
418 3o8b_A HCV NS3 protease/helica 22.9 1.7E+02 0.0058 23.8 5.7 30 83-113 318-347 (666)
419 1sqg_A SUN protein, FMU protei 22.9 49 0.0017 25.0 2.5 15 83-97 315-329 (429)
420 3h1g_A Chemotaxis protein CHEY 22.8 1.2E+02 0.0042 17.6 5.7 41 82-125 50-91 (129)
421 2f48_A Diphosphate--fructose-6 22.7 1E+02 0.0035 24.6 4.3 59 68-126 252-314 (555)
422 3mxo_A Serine/threonine-protei 22.7 1.1E+02 0.0037 20.1 4.0 29 99-127 112-146 (202)
423 1uiy_A Enoyl-COA hydratase; ly 22.7 1.8E+02 0.0062 20.0 5.3 38 86-123 11-51 (253)
424 3trr_A Probable enoyl-COA hydr 22.6 1.5E+02 0.0052 20.6 4.9 38 86-123 19-59 (256)
425 3lxw_A GTPase IMAP family memb 22.5 72 0.0025 21.9 3.2 59 69-128 88-151 (247)
426 2fbm_A Y chromosome chromodoma 22.5 2.1E+02 0.0073 20.3 5.9 38 86-123 35-75 (291)
427 1tue_A Replication protein E1; 22.4 94 0.0032 21.5 3.6 13 82-94 102-114 (212)
428 3o8o_B 6-phosphofructokinase s 22.3 3E+02 0.01 22.9 7.1 51 72-123 202-253 (766)
429 2d00_A V-type ATP synthase sub 22.2 82 0.0028 19.1 3.0 25 102-126 32-56 (109)
430 2q35_A CURF; crotonase, lyase; 21.7 1.7E+02 0.0059 20.1 5.0 36 87-122 16-54 (243)
431 3t3w_A Enoyl-COA hydratase; ss 21.6 1.6E+02 0.0055 20.8 4.9 38 86-123 32-72 (279)
432 3b55_A Succinoglycan biosynthe 21.6 1.2E+02 0.0043 23.3 4.5 59 74-133 65-123 (451)
433 3qmj_A Enoyl-COA hydratase, EC 21.5 1.7E+02 0.0057 20.3 4.9 37 86-122 18-57 (256)
434 3qxi_A Enoyl-COA hydratase ECH 21.4 1.7E+02 0.0057 20.5 4.9 38 86-123 27-67 (265)
435 3p9d_D T-complex protein 1 sub 21.4 1.3E+02 0.0045 23.6 4.7 45 81-126 229-292 (528)
436 3qxz_A Enoyl-COA hydratase/iso 21.3 1.6E+02 0.0056 20.5 4.9 38 86-123 19-59 (265)
437 3crn_A Response regulator rece 21.2 1.3E+02 0.0046 17.5 6.2 40 81-125 45-85 (132)
438 2qsj_A DNA-binding response re 21.2 1.4E+02 0.0049 17.9 4.5 38 82-124 49-86 (154)
439 1m5w_A Pyridoxal phosphate bio 21.2 2.2E+02 0.0077 20.1 6.6 57 75-132 79-144 (243)
440 2qni_A AGR_C_517P, uncharacter 21.2 1E+02 0.0036 20.8 3.7 27 101-127 138-166 (219)
441 3pe8_A Enoyl-COA hydratase; em 21.1 1.6E+02 0.0055 20.5 4.8 39 86-124 21-62 (256)
442 2frx_A Hypothetical protein YE 21.1 82 0.0028 24.4 3.5 43 83-126 187-249 (479)
443 4fzw_C 1,2-epoxyphenylacetyl-C 20.9 2.2E+02 0.0075 20.0 5.5 38 86-123 27-67 (274)
444 4emb_A 2,3-bisphosphoglycerate 20.9 80 0.0027 22.0 3.2 26 102-127 183-211 (274)
445 1dmg_A Ribosomal protein L4; a 20.8 2.1E+02 0.007 19.9 5.2 47 64-112 94-146 (225)
446 3hrx_A Probable enoyl-COA hydr 20.7 1.2E+02 0.004 21.0 4.0 38 86-123 12-52 (254)
447 1ex9_A Lactonizing lipase; alp 20.6 1.6E+02 0.0054 20.5 4.7 53 76-128 31-85 (285)
448 1q3q_A Thermosome alpha subuni 20.6 68 0.0023 25.4 2.9 48 81-129 234-300 (548)
449 2qgm_A Succinoglycan biosynthe 20.6 1.5E+02 0.0052 22.7 4.9 60 74-134 64-123 (445)
450 3h81_A Enoyl-COA hydratase ECH 20.5 1.7E+02 0.0059 20.6 4.9 38 86-123 37-77 (278)
451 3hv2_A Response regulator/HD d 20.3 1.5E+02 0.0052 17.8 6.4 39 81-124 56-94 (153)
452 1p2f_A Response regulator; DRR 20.3 1.9E+02 0.0064 18.8 5.2 39 82-125 42-81 (220)
453 2qxy_A Response regulator; reg 20.1 1.5E+02 0.005 17.5 6.0 39 81-125 46-85 (142)
454 3kkk_A Phosphoglycerate mutase 20.1 86 0.003 21.5 3.2 27 101-127 166-195 (258)
455 3hdg_A Uncharacterized protein 20.1 1.4E+02 0.0049 17.4 5.7 38 82-124 50-87 (137)
456 3lke_A Enoyl-COA hydratase; ny 20.0 1.9E+02 0.0064 20.2 5.0 38 86-123 16-56 (263)
457 1rii_A 2,3-bisphosphoglycerate 20.0 99 0.0034 21.6 3.5 27 101-127 157-186 (265)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-39 Score=245.53 Aligned_cols=131 Identities=26% Similarity=0.397 Sum_probs=120.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.|||+||++.+++.+||+||+.++....+.++.+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999999887777777777778888899999865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..++++|++++++.|.|||++|||++++.. ||++.+
T Consensus 184 lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999999999999999999987679999999999999988 999863
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-38 Score=243.36 Aligned_cols=130 Identities=31% Similarity=0.403 Sum_probs=120.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.|||+||++.+||++||+||+.|+...++.++.+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l 154 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV 154 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE
Confidence 569999999999999999999999887777777777788888999999865 7999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++++
T Consensus 155 LLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v 206 (381)
T 3rlf_A 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV 206 (381)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 999999999999999999999999976668999999999999988 999864
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-38 Score=242.32 Aligned_cols=131 Identities=25% Similarity=0.329 Sum_probs=117.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+||++||+||+.|+....+.++.+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp GSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999998766555555666777888888889865 799999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.+.++.++.|.|+|++|||++++.. ||++++
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v 211 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV 211 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence 9999999999999999999998888766679999999999999988 999863
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-37 Score=225.79 Aligned_cols=128 Identities=27% Similarity=0.350 Sum_probs=111.5
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhc---CCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLY---NIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.+||+||++.+++.+||+||+.++.... ..+..+..+.+..+++.+++.. .++++.+||||||||++|||||+.+
T Consensus 84 ~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~ 163 (235)
T 3tif_A 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163 (235)
T ss_dssp HEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999876543 2344555566777788888864 3889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++|||||||+|||+.++..+++.+++++++.|.|||++|||++.+..||++.
T Consensus 164 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~ 216 (235)
T 3tif_A 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERII 216 (235)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEE
Confidence 99999999999999999999999999997655899999999999775599875
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-37 Score=237.28 Aligned_cols=131 Identities=26% Similarity=0.439 Sum_probs=117.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+|+++||+||+.|+....+.+..+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999876666666666677888888999865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 218 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV 218 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999976558999999999999988 998753
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.9e-37 Score=236.47 Aligned_cols=131 Identities=31% Similarity=0.437 Sum_probs=117.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+|+++||+||+.|+....+.+..+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 153 (362)
T 2it1_A 74 DRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPE 153 (362)
T ss_dssp GTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred HCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999876666666666677888888999865 799999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 206 (362)
T 2it1_A 154 VLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV 206 (362)
T ss_dssp EEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999976558999999999999987 998863
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.4e-37 Score=236.78 Aligned_cols=131 Identities=27% Similarity=0.402 Sum_probs=117.7
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+|+++||+||+.|+....+.+..+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~ 159 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ 159 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3679999999999999999999999877666666666677888888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999976558999999999999987 998753
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-37 Score=220.92 Aligned_cols=128 Identities=25% Similarity=0.244 Sum_probs=112.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+++.+||.||+.++...++.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999999999999998765555544445566778888888865 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||||||+|||+.++..+.+.+++++++ |.|||++|||++++..||++.
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~ 210 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTL 210 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEE
Confidence 9999999999999999999999999765 899999999999984499875
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-37 Score=236.74 Aligned_cols=131 Identities=23% Similarity=0.356 Sum_probs=116.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+|+++||+||+.|+...++.+..+.++.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 4679999999999999999999998765555555556677888888899865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 213 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV 213 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999976558999999999999988 998753
No 10
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8.3e-37 Score=224.40 Aligned_cols=128 Identities=31% Similarity=0.450 Sum_probs=112.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHH-HhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.|||+||++.+++.+||+||+.++. ...+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 100 ~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ 179 (263)
T 2olj_A 100 EEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPK 179 (263)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCC
Confidence 45999999999999999999999864 4444444445566778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+.+.|++++++ |.|||++|||++++.. ||++.
T Consensus 180 lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 230 (263)
T 2olj_A 180 IMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVL 230 (263)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE
Confidence 99999999999999999999999999765 8999999999999987 99875
No 11
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.8e-37 Score=236.39 Aligned_cols=131 Identities=27% Similarity=0.348 Sum_probs=114.9
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
.+.|||+||++.+|+++||+||+.|+...++.+..+.++.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 74 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~ 153 (359)
T 2yyz_A 74 YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPK 153 (359)
T ss_dssp GTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999998765444444444566778888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 154 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v 206 (359)
T 2yyz_A 154 VLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV 206 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999876558999999999999987 998753
No 12
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=2.4e-37 Score=228.58 Aligned_cols=130 Identities=25% Similarity=0.329 Sum_probs=114.2
Q ss_pred CcEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.|||+||++. .++.+||+||+.++....+.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46999999973 4446899999999877666666666777888888899865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|||||||+|||+.++..++++|++++++.|.|||++|||++++.. ||++.+
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~ 216 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV 216 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 9999999999999999999999999973348999999999999987 999853
No 13
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.7e-37 Score=236.37 Aligned_cols=130 Identities=27% Similarity=0.388 Sum_probs=109.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.|||+||++.+|+++||+||+.|+....+.++.+.++.++.+++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 579999999999999999999998755445555556677888888899865 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v 214 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV 214 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999976558999999999999987 998753
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9.5e-37 Score=231.64 Aligned_cols=127 Identities=29% Similarity=0.402 Sum_probs=112.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.|||+||++.+|+++||+||+.|+...++.+.. +.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 72 r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l 148 (348)
T 3d31_A 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI 148 (348)
T ss_dssp HTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 4699999999999999999999997665443332 56677888888865 7999999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||||||+|||+..+..+.+.|+++.++.|.|+|++|||++++.. ||++.+
T Consensus 149 LLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v 200 (348)
T 3d31_A 149 LLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV 200 (348)
T ss_dssp EEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999976668999999999999987 998753
No 15
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-36 Score=223.03 Aligned_cols=128 Identities=26% Similarity=0.383 Sum_probs=112.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHH-HhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
+.+||+||++.+++.+||.||+.++. ...+.+..+.++.++.+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 93 ~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 172 (262)
T 1b0u_A 93 TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEP 172 (262)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 46999999999999999999999854 3344444445566778888888854 58899999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++.. ||++.
T Consensus 173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 224 (262)
T 1b0u_A 173 DVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVI 224 (262)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEE
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999764 8999999999999987 99875
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-36 Score=221.25 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=112.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.+||+||++.+++.+||+||+.++...++.+..+..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 569999999999999999999998765555554444556777888888865 6889999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~ 217 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIA 217 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEE
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEE
Confidence 999999999999999999999999975 48999999999999988 99875
No 17
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-37 Score=222.90 Aligned_cols=128 Identities=27% Similarity=0.377 Sum_probs=110.0
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
++.+||+||++.+++.+||+||+.++...++ ....++.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcC--CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 3569999999999999999999987543222 1222456677888888865 789999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.+++.+++.+++++++.|.|||++|||++++.. ||++.
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~ 198 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVA 198 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999875558899999999999877 99875
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-36 Score=221.73 Aligned_cols=128 Identities=24% Similarity=0.258 Sum_probs=110.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHh--cC-----------CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKL--YN-----------IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARR 73 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqr 73 (137)
+.+||+||++.+++.+||.||+.++... .+ ....+..+.++.+++.+++.. .++++.+||||||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHH
Confidence 3599999999999999999999876432 12 222334556777888888865 789999999999999
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++.. ||++.
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEE
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999754 8999999999999987 99875
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.2e-36 Score=219.76 Aligned_cols=128 Identities=25% Similarity=0.284 Sum_probs=111.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc----
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH---- 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~---- 82 (137)
+.+||++|++.+++.+||.||+.++...+ ...+.++.++.+++.+++.. .++++.+||||||||++|||||+.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~ 162 (266)
T 4g1u_C 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQP 162 (266)
T ss_dssp HHEEEECSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCS
T ss_pred heEEEEecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 45899999999888899999998865433 22334566777888888865 789999999999999999999999
Q ss_pred --CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 83 --SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 83 --~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+|++|||||||+|||+.++..+++.|++++++.|+|||++|||++++.. ||++.+
T Consensus 163 ~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~v 220 (266)
T 4g1u_C 163 QPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIML 220 (266)
T ss_dssp SCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEE
T ss_pred CCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999976667899999999999987 999853
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.9e-35 Score=216.07 Aligned_cols=129 Identities=26% Similarity=0.302 Sum_probs=110.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-C---CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-N---IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
+.+||+||++.+++.+||.||+.++.... + .......+.++.+++.+++.. .++++.+||||||||++|||||+.
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 56999999999998899999998864322 1 122333456677888888865 688999999999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++++.. ||++.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~ 200 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTL 200 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999976558999999999999977 99875
No 21
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-35 Score=214.87 Aligned_cols=127 Identities=20% Similarity=0.377 Sum_probs=107.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC-CCC-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLD-LPP-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+.+||+||++.+++.+||.||+.++.. ......+..+.++.+++.++ +.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 359999999999999999999987532 12223344556666777773 643 688999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++||||||+|||+.++..+.+.|+++++ .|+|||++|||++++.. ||++.
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~ 210 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGY 210 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEE
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999975 58999999999999877 99875
No 22
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-35 Score=211.43 Aligned_cols=127 Identities=23% Similarity=0.319 Sum_probs=108.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
++.+||+||++.+++.+|+.||+.++...++. ..+ .+.++.+++.+++...++++.+||||||||++|||||+.+|++
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l 154 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 154 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 35699999999999999999999987654432 222 4456677777787422788999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+||||||+|||+.++..+.+.|++++++ |.|||++|||++++.. ||+++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 155 YVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGG
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999998754 7899999999999988 88875
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-35 Score=216.47 Aligned_cols=127 Identities=27% Similarity=0.376 Sum_probs=108.2
Q ss_pred CcEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC--C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 8 SMLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP--P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 8 ~~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
+.+||+||++ .+++.+||+||+.++.... .+..+.++.++.+++.+++. . .++++.+||||||||++|||||+.+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 156 (266)
T 2yz2_A 78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE 156 (266)
T ss_dssp GGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hhEEEEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 5699999996 4666789999998864322 22223345567778888887 6 6899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|+++||||||+|||+.++..+.+.|++++++ |.|||++|||++++.. ||++.
T Consensus 157 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~ 209 (266)
T 2yz2_A 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVV 209 (266)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEE
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999755 8999999999999987 99875
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6e-34 Score=207.73 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=106.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC-
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD- 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~- 85 (137)
+.+||+||++.+++.+||+||+.++. ..... ++.++.+++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 73 LHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp HHEEEECSCCCCCTTCBHHHHHHTTC-SSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred ceEEEECCCCccCCCCcHHHHHHHhh-ccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCc
Confidence 46999999999999999999998752 11111 345667777888854 688999999999999999999999999
Q ss_pred ------eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 ------IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 ------illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|||||||+|||+.++..+.+.|++++++ |.|||++|||++++.. ||++.
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~ 204 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAW 204 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEE
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999754 8999999999999976 99875
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.9e-34 Score=207.45 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=102.5
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHh-cC--CChhHHHHHHHHHHHHcCCC-C-CCCCCCC-CChHHHHHHHHHHHHhc
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKL-YN--IPRSSVEAVIKDLQLVLDLP-P-GNQLCST-LSGGQARRVSIAVTLLH 82 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~-LS~G~kqrv~ia~al~~ 82 (137)
.++|+||++.+|+.+|+.||+.+.... .+ ....+..+.+..+++.+++. . .++++.+ ||||||||++|||||+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 489999999999999999999876432 22 22333445667778888883 4 6888998 99999999999999999
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
+|+++||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~ 215 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVH 215 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEE
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEE
Confidence 9999999999999999999999999999864 58999999999999987 48875
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.3e-34 Score=211.51 Aligned_cols=128 Identities=23% Similarity=0.344 Sum_probs=105.1
Q ss_pred CcEEEEeccCCCC--CCCCHHHHHHHHHHh----cCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALF--EEFTISETFAFFSKL----YNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 8 ~~i~~~~q~~~l~--~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al 80 (137)
+.|||+||++.++ +.+||+||+.++... ++....+..+.++.+++.+++.. .++++.+||||||||++|||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 5699999997543 356999999874211 11122333456677888888865 6899999999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEE--EEEcCCHHHHHh-ccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI--IITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tv--i~~tH~~~~~~~-~d~~~ 136 (137)
+.+|++|||||||+|||+.+++.+++.|++++++ |.|| |++|||++++.. ||++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999765 8899 999999999877 89875
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1e-33 Score=208.75 Aligned_cols=127 Identities=22% Similarity=0.242 Sum_probs=101.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHH-----HHHHHHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-----VIKDLQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.|||+||++.+|+ .||+||+.++..... ...+... .+..+++.+ ++.. .++++.+||||||||++||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 93 TQVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp HHEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred ccEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence 46999999999887 599999987532111 1122111 123444444 4543 578899999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+.+|++|||||||+|||+.++..+.+.|+++.++.|+|||++|||++++..||++.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~ 227 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHIL 227 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEE
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEE
Confidence 999999999999999999999999999999986545899999999999998799875
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.3e-33 Score=204.13 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=106.6
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHH-h---cC---CChhHHHHHHHHHHHHcCCC-C-CCCCCC-CCChHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSK-L---YN---IPRSSVEAVIKDLQLVLDLP-P-GNQLCS-TLSGGQARRVSIAV 78 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~-~---~~---~~~~~~~~~~~~~~~~~~l~-~-~~~~~~-~LS~G~kqrv~ia~ 78 (137)
.+||+||++.+++.+|+.+|+.+... . .+ .+..+..+.++.+++.+++. . .++++. +||||||||++|||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 48999999999999999999986532 1 11 22334455677788888884 3 578887 59999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh--ccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ--ADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~--~d~~~ 136 (137)
||+.+|++|||||||+|||+.+++.+.+.|+++++ .|+|||++|||++++.. ||++.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEE
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEE
Confidence 99999999999999999999999999999999864 48999999999999876 78875
No 29
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=2.2e-32 Score=200.84 Aligned_cols=120 Identities=21% Similarity=0.311 Sum_probs=102.6
Q ss_pred CCcEE-EEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLG-FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~-~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
++.+| |+||++.+ .+|+.||+.++...+... .+.++.+++.+++. . .++++.+||||||||++|||||+.+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLD----RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCC----HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchH----HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 45799 99999987 789999999875443221 34456677777886 5 6889999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cc-ccc
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-AD-MRE 136 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d-~~~ 136 (137)
|+++||||||+|||+.+++.+.+.|++++ . |||++|||++++.. || ++.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~ 197 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAY 197 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEE
Confidence 99999999999999999999999998874 2 99999999999877 89 764
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.5e-32 Score=205.49 Aligned_cols=125 Identities=30% Similarity=0.405 Sum_probs=98.4
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.|||+||++.+|+ .||+||+.++... ...++..+..+.+ ...+ ++.. ..+++.+||||||||++||||
T Consensus 128 ~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARA 204 (306)
T 3nh6_A 128 SHIGVVPQDTVLFN-DTIADNIRYGRVT--AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204 (306)
T ss_dssp HTEEEECSSCCCCS-EEHHHHHHTTSTT--CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred cceEEEecCCccCc-ccHHHHHHhhccc--CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHH
Confidence 46999999999986 5999999875322 2233333332221 1111 2222 356778999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|+.+|++|||||||+|||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|.+
T Consensus 205 L~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~aD~i~v 260 (306)
T 3nh6_A 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNADQILV 260 (306)
T ss_dssp HHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHTCSEEEE
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHcCCEEEE
Confidence 9999999999999999999999999999999863 6899999999999998999863
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.97 E-value=6.1e-32 Score=196.89 Aligned_cols=124 Identities=25% Similarity=0.360 Sum_probs=96.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.|||+||++.+|+ .||+||+.++.. ....+.+.+.++.+ .... ++.. .++++.+||||||||++||||
T Consensus 83 ~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 83 RQVGVVLQDNVLLN-RSIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp HHEEEECSSCCCTT-SBHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred hcEEEEeCCCcccc-ccHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 46999999999887 599999987521 12222222222211 1111 2212 356778999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+.+|+++||||||+|||+.++..+.+.|+++. + |+|||++|||++.+..||++.
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~~d~v~ 214 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKNADRII 214 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTTSSEEE
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHhCCEEE
Confidence 999999999999999999999999999999984 3 899999999999987799875
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=5.9e-32 Score=196.46 Aligned_cols=122 Identities=25% Similarity=0.320 Sum_probs=98.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-C-----------CCCCCCCChHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-G-----------NQLCSTLSGGQARRV 74 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-----------~~~~~~LS~G~kqrv 74 (137)
++.+||+||++.+|+ .|++||+.++.. ..... +.+..+++.+++.. . ++++.+||||||||+
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv 148 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE-GDYTD----EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRL 148 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT-SCSCH----HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc-CCCCH----HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHH
Confidence 457999999999887 499999986421 11222 22334444444432 2 345689999999999
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|||||+.+|+++||||||+|||+.+++.+.+.|+++. + |+|||++|||++.+..||++.
T Consensus 149 ~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~ 208 (243)
T 1mv5_A 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIY 208 (243)
T ss_dssp HHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEE
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999986 3 899999999999987799875
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=1.5e-31 Score=196.11 Aligned_cols=124 Identities=30% Similarity=0.422 Sum_probs=95.5
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH--HHHc-CCCC-----CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL--QLVL-DLPP-----GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~~-----~~~~~~~LS~G~kqrv~ia~a 79 (137)
+.|||+||++.+|+ .||+||+.++.. ....++..+.++.+ .+.. .++. .++++.+||||||||++||||
T Consensus 93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 93 SIIGIVPQDTILFN-ETIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp TTEEEECSSCCCCS-EEHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccc-cCHHHHHhccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHH
Confidence 56999999999886 599999987421 12222222222111 1111 1221 246788999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+.+|+++||||||+|||+.++..+.+.|++++ + |.|||++|||++.+..||++.
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~ 224 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESII 224 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEE
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEE
Confidence 999999999999999999999999999999985 3 789999999999987799875
No 34
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.3e-30 Score=207.61 Aligned_cols=130 Identities=24% Similarity=0.250 Sum_probs=107.1
Q ss_pred cCCCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 5 TGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 5 ~~~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
...+.++|++|+....+..||.+|+.+.... .... .....+.+++.+++.. .++++.+|||||||||+|||||+.+
T Consensus 327 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 327 PEKQILSYKPQRIFPNYDGTVQQYLENASKD-ALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp SSCCCEEEECSSCCCCCSSBHHHHHHHHCSS-TTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred ECCeeeEeechhcccccCCCHHHHHHHhhhh-ccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 3456799999998766678999998763211 1111 1234456666677754 7899999999999999999999999
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|++|||||||+|||+.++..+.++|++++++.|.|||++|||++++.. ||++.+
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v 458 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV 458 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999999976678999999999999998 999863
No 35
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=7.4e-30 Score=205.59 Aligned_cols=125 Identities=24% Similarity=0.269 Sum_probs=105.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
..+||+||++..++.+||.+++...... .. ...+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 4699999998877889999988654111 00 11234556667777754 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||||||+|||+.++..+.++|+++.++.|.|||++|||++++.. ||++.
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~ 543 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEE
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999875568999999999999988 99875
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=7.2e-31 Score=190.17 Aligned_cols=122 Identities=26% Similarity=0.396 Sum_probs=93.0
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH--HHHHcCC-C-----CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVLDL-P-----PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l-~-----~~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+||+||++.+ +.+|++||+.++... .....++..+. +.+.++. + ..++++.+||||||||++|||||
T Consensus 67 ~i~~v~Q~~~~-~~~tv~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 67 SVAYVPQQAWI-QNDSLRENILFGCQL---EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp CEEEECSSCCC-CSEEHHHHHHTTSCC---CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCcC-CCcCHHHHhhCcccc---CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999875 468999999875321 12222222221 1222222 1 13678899999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHH---HHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLN---RLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~---~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+++.+. ++. .|.|||++|||++.+..||++.
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~~~d~v~ 199 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLPQVDVII 199 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGGGSSEEE
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999999999999985 332 3789999999999987799875
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=1.2e-30 Score=188.05 Aligned_cols=122 Identities=26% Similarity=0.312 Sum_probs=91.4
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH--HHHHcC-CCC-----CCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVLD-LPP-----GNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~~-l~~-----~~~~~~~LS~G~kqrv~ia~al 80 (137)
.+||+||++.+|+. |++||+.++.. .......+..+. +.+... ++. .++++.+||||||||++|||||
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral 145 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVS---YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV 145 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSC---CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEecCCcccCC-CHHHHhhccCC---cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHH
Confidence 58999999998885 99999987421 111111111111 111111 111 2345789999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHH-HHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKY-LNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~-l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+.+. +.++. .|.|||++|||++++..||++.
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~~~d~v~ 200 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLKKADKIL 200 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHHHCSEEE
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHHhCCEEE
Confidence 999999999999999999999999997 45553 3789999999999987799875
No 38
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.8e-31 Score=203.42 Aligned_cols=120 Identities=22% Similarity=0.311 Sum_probs=99.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCC-----------CChHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCST-----------LSGGQARRVS 75 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~-----------LS~G~kqrv~ 75 (137)
+.+||+||++.+|+ +||+||+.+.. ... ++.+..+++.+++.. .++++.+ ||||||||++
T Consensus 94 r~ig~v~Q~~~lf~-~tv~enl~~~~---~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 94 KAFGVIPQKVFIFS-GTFRKNLDPNA---AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp HTEEEESCCCCCCS-EEHHHHHCTTC---CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CCEEEEcCCcccCc-cCHHHHhhhcc---ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 56999999999997 69999986421 122 234455666677754 5777777 9999999999
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|||||+.+|++|||||||+|||+..+..+.+.|+++. .+.|+|++|||++.+..||++++
T Consensus 166 lARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~~aDri~v 225 (390)
T 3gd7_A 166 LARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAMLECDQFLV 225 (390)
T ss_dssp HHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGTTCSEEEE
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999998864 37899999999987777999863
No 39
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=7.9e-30 Score=203.16 Aligned_cols=125 Identities=24% Similarity=0.265 Sum_probs=104.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
..+||+||++..++.+||.+++...... ... ..+.++.+++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 4699999998877888998887653111 001 1234556666777754 6899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
|||||||+|||+.++..+.+.|+++.++.|.|||++|||++++.. ||++.
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~ 473 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM 473 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999865558899999999999988 99875
No 40
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=4.8e-30 Score=205.94 Aligned_cols=127 Identities=26% Similarity=0.400 Sum_probs=98.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++++||+||++.+|+. |++||+.++.. ...+.++..+.++.+ .+.+ |+.. ..++..+||||||||++|||
T Consensus 416 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 416 RRHFALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred hcCeEEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 3579999999999985 99999987531 122233333332221 1111 2211 24567899999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++.+|+++||||||+|||+.+++.+.+.++++. + |+|+|++||+++.+..||++.+
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~ 550 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIEQADEILV 550 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999985 3 8899999999999988999753
No 41
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-29 Score=202.59 Aligned_cols=126 Identities=25% Similarity=0.216 Sum_probs=103.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
..++|++|+.......|+.+++... ...... .....+.+++.+++.. .++++.+|||||||||+|||||+.+|++
T Consensus 413 ~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l 488 (608)
T 3j16_B 413 LNVSMKPQKIAPKFPGTVRQLFFKK--IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI 488 (608)
T ss_dssp CCEEEECSSCCCCCCSBHHHHHHHH--CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE
T ss_pred CcEEEecccccccCCccHHHHHHHH--hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 4689999998766667999987532 211111 1234456667777755 7899999999999999999999999999
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
|||||||+|||+.++..+.++|+++.++.|.|||++|||++++.. ||++.+
T Consensus 489 LlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv 540 (608)
T 3j16_B 489 YLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540 (608)
T ss_dssp EEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 999999999999999999999999865568999999999999988 999853
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.5e-30 Score=207.82 Aligned_cols=126 Identities=29% Similarity=0.375 Sum_probs=98.6
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH-----HHHHc--CCCC-CCCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVL--DLPP-GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~ 78 (137)
++++||+||++.+|+. |++||+.++.. ..+.++..+..+. ....+ |+.. .++++.+||||||||++|||
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHH
Confidence 3569999999999976 99999986421 1223333322221 11111 2222 36778899999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|++.+|+++||||||++||+.+.+.+.+.++++. .|+|+|++||+++.+..||++.+
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~~~d~i~v 549 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTALLADKILV 549 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHTTSSEEEE
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHHhCCEEEE
Confidence 9999999999999999999999999999999874 38999999999999988999863
No 43
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=8e-30 Score=205.10 Aligned_cols=126 Identities=29% Similarity=0.428 Sum_probs=96.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhc-CCChhHHHHHHHHHH--HH-cCCCC-----CCCCCCCCChHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQ--LV-LDLPP-----GNQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~--~~-~~l~~-----~~~~~~~LS~G~kqrv~ia~ 78 (137)
+++||+||++.+|+. |++||+.++.... +.+.++..+.++.+. +. ..++. ..+++.+||||||||++|||
T Consensus 418 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 418 SKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp HSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred hceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 469999999999875 9999998753211 122333333322211 00 01221 23455899999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++++|+++||||||++||+.+++.+.+.++++.+ |+|+|++||+++.+..||++.
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~ 552 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIKNANMVA 552 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHHHSSEEE
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHcCCEEE
Confidence 99999999999999999999999999999999864 789999999999998899875
No 44
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=8.8e-30 Score=204.42 Aligned_cols=125 Identities=26% Similarity=0.386 Sum_probs=97.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH-----HHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+++||+||++.+|+. |++||+.++.. ...+.++..+.++. ..+.+ |+.. ..++..+||||||||++||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 469999999999985 99999987531 12233333332221 11111 2211 345678999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++++|+++||||||+|||+.+++.+.+.++++.+ |+|+|++||+++.+..||++.
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEQADEIV 549 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTTTCSEEE
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHHhCCEEE
Confidence 9999999999999999999999999999999863 889999999999988899875
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=1.6e-29 Score=202.86 Aligned_cols=125 Identities=28% Similarity=0.371 Sum_probs=96.7
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-----HHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL-----QLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+++||+||++.+|+. |++||+.++.. ....++..+..+.. ...+ |+.. ..++..+||||||||++||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS--SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 469999999999987 99999987521 12223333332211 1111 1111 245667999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++++|+++||||||+|||+.+...+.+.++++. .++|+|++||+++.+..||++.+
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~ 547 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITHADKIVV 547 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTTCSEEEE
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEE
Confidence 999999999999999999999999999999885 36899999999999988999853
No 46
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.2e-29 Score=204.30 Aligned_cols=125 Identities=25% Similarity=0.341 Sum_probs=95.9
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH-----HHHHc--CCCC-CCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVL--DLPP-GNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~l~~-~~~~~~~LS~G~kqrv~ia~a 79 (137)
+++||+||++.+|+. |++||+.++.. ..+.++..+..+. ....+ |+.. ..+...+||||||||++||||
T Consensus 429 ~~i~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 429 SSIGIVLQDTILFST-TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp HHEEEECTTCCCCSS-BHHHHHHSSST--TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred hceEEEeCCCccccc-cHHHHHhcCCC--CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 469999999999875 99999987521 1222333322211 11111 1111 123447899999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++.+|+++||||||++||+.+...+.+.++++. .|+|+|++||+++.+..||++.+
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~~d~i~~ 561 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKNADLIIV 561 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHHCSEEEE
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEE
Confidence 999999999999999999999999999999985 38999999999999988999863
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.95 E-value=8.8e-29 Score=183.93 Aligned_cols=121 Identities=25% Similarity=0.260 Sum_probs=87.9
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHH-----HHHHHcCCC---CCCCCCCCCChHHHHHHHHHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK-----DLQLVLDLP---PGNQLCSTLSGGQARRVSIAVTL 80 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~---~~~~~~~~LS~G~kqrv~ia~al 80 (137)
++||+||++.+|+. |++||+. +. ........+..+ ......... ..++++.+||||||||++|||||
T Consensus 100 ~i~~v~Q~~~l~~~-tv~enl~-~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL 174 (290)
T 2bbs_A 100 RISFCSQNSWIMPG-TIKENII-GV---SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174 (290)
T ss_dssp CEEEECSSCCCCSS-BHHHHHH-TT---CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCccCcc-cHHHHhh-Cc---ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHH
Confidence 58999999998885 9999997 32 112211111111 111111100 12345689999999999999999
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHH-HHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYL-NRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l-~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.+|+++||||||+|||+.++..+++.+ +++. .|+|||++|||++.+..||++.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~~~~~d~i~ 229 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLKKADKIL 229 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHHHSSEEE
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHcCCEEE
Confidence 9999999999999999999999999974 4553 3789999999999987799875
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=5.3e-28 Score=194.82 Aligned_cols=118 Identities=22% Similarity=0.298 Sum_probs=96.9
Q ss_pred cEEEEeccCCCCC---CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEIALFE---EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+++++|....++ ..|+.||+... . . .+.++.+++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 177 ~i~~~~q~~~~~~~~~~~tv~e~l~~~----~-~----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P 247 (607)
T 3bk7_A 177 RPVVKPQYVDLLPKAVKGKVRELLKKV----D-E----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKA 247 (607)
T ss_dssp CCEEECSCGGGGGGTCCSBHHHHHHHT----C-C----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ceEEeechhhhchhhccccHHHHhhhh----H-H----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 4788888643322 13899987531 1 1 123455667778865 78999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||||+|||+.++..+.++|+++.+ .|.|||++|||++++.. ||+++
T Consensus 248 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~ 299 (607)
T 3bk7_A 248 HFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIH 299 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEE
Confidence 99999999999999999999999999975 48999999999999988 89875
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=9.2e-28 Score=191.26 Aligned_cols=118 Identities=21% Similarity=0.284 Sum_probs=97.2
Q ss_pred cEEEEeccCCCCCC---CCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 9 MLGFMPQEIALFEE---FTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 9 ~i~~~~q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
.+++++|...+++. .|+.+++... .. .+.++.+++.+++.. .++++.+|||||||||+||+||+.+|
T Consensus 107 ~~~~~~q~~~~~~~~~~~~v~e~~~~~----~~-----~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 107 RPVVKPQYVDLIPKAVKGKVIELLKKA----DE-----TGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp CCEEECSCGGGSGGGCCSBHHHHHHHH----CS-----SSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhhhhhhhhhhcchhhhccHHHHHhhh----hH-----HHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 47888887544332 3788877531 11 123455667778865 78999999999999999999999999
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
++|||||||++||+.++..+.++|+++++ .|.|||++|||++++.. ||+++
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~ 229 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIH 229 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999976 58999999999999988 89885
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=1.3e-28 Score=211.92 Aligned_cols=128 Identities=28% Similarity=0.401 Sum_probs=100.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCC-CCC----CCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPP-GNQ----LCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~-~~~----~~~~LS~G~kqrv~ia~ 78 (137)
+++|+||||+|.+|+. |++||+.++......+.+++.++++.+. + ...++. .+. ...+||||||||++|||
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 4679999999999987 9999998753222233444444443221 1 112333 233 34679999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+++|+|||||||||+||+.+.+.+.+.|++.. .|+|+|+|+|.++.+..||+|.+
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~aD~I~V 1287 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMNADCIAV 1287 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTTCSEEEE
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHhCCEEEE
Confidence 9999999999999999999999999999998764 47999999999999999999874
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=4.2e-27 Score=202.09 Aligned_cols=125 Identities=29% Similarity=0.462 Sum_probs=98.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH-----HHHHc--CCC-CCCCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVL--DLP-PGNQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~l~-~~~~~~~~LS~G~kqrv~ia~a 79 (137)
++|||++|++.+|+. |++||+.++.. ..+.++..+..+. ....+ ++. ...++..+||||||||++||||
T Consensus 464 ~~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARa 540 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540 (1284)
T ss_dssp HHEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHH
Confidence 469999999999986 99999988632 2233333333322 12222 111 1345678999999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++.+|++||||||||+||+.+.+.+.+.+++.. .|+|+|++||+++.+..||+|.+
T Consensus 541 l~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~~d~i~v 596 (1284)
T 3g5u_A 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRNADVIAG 596 (1284)
T ss_dssp HHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTTCSEEEE
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEE
Confidence 999999999999999999999999999998875 38999999999999988999863
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=8.3e-28 Score=195.57 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHhcCCC--hhHH----HHHH--HHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC--eE
Q psy17960 20 FEEFTISETFAFFSKLYNIP--RSSV----EAVI--KDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD--II 87 (137)
Q Consensus 20 ~~~ltv~e~l~~~~~~~~~~--~~~~----~~~~--~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~--il 87 (137)
++.+|+.||+.++....... .... .+.. ..+++.+++.. .++++.+||||||||++|||||+.+|+ +|
T Consensus 147 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL 226 (670)
T 3ux8_A 147 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 226 (670)
T ss_dssp ----CC--------------------------CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE
T ss_pred ccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 45679999987743221100 0000 1111 12356677753 589999999999999999999999998 99
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||||+|||+..+..++++|+++++ .|.|||+||||++.+..||++.
T Consensus 227 lLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~d~ii 274 (670)
T 3ux8_A 227 VLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLI 274 (670)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHCSEEE
T ss_pred EEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhhCCEEE
Confidence 99999999999999999999999975 5899999999999988899875
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=2.6e-27 Score=203.39 Aligned_cols=128 Identities=28% Similarity=0.434 Sum_probs=98.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--HHc-CCCC-C----CCCCCCCChHHHHHHHHHH
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--LVL-DLPP-G----NQLCSTLSGGQARRVSIAV 78 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~~-~----~~~~~~LS~G~kqrv~ia~ 78 (137)
++++||+||++.+|+ .|++||+.++......+.+++.+..+... +.. .++. . .+...+||||||||++|||
T Consensus 1106 r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iAR 1184 (1284)
T 3g5u_A 1106 RAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184 (1284)
T ss_dssp TTSCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHH
T ss_pred HhceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHH
Confidence 467999999998886 59999998753222233334433333221 111 1222 1 3345789999999999999
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
||+.+|++|||||||+|||+.+.+.+.+.+++.. .|+|+|++|||++++..||+|.+
T Consensus 1185 al~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~~~dri~v 1241 (1284)
T 3g5u_A 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQNADLIVV 1241 (1284)
T ss_dssp HHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGGSCSEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHHcCCEEEE
Confidence 9999999999999999999999999999998863 48999999999999988999863
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=2.3e-26 Score=187.13 Aligned_cols=109 Identities=27% Similarity=0.412 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCC
Q psy17960 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGV 96 (137)
Q Consensus 22 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gL 96 (137)
.+|+.||+.++.. . ...++. ...+..+++.. .++++.+|||||||||+|||||+.+| ++|||||||+||
T Consensus 504 ~ltv~e~l~~~~~---~--~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~L 577 (670)
T 3ux8_A 504 DMTVEDALDFFAS---I--PKIKRK-LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 577 (670)
T ss_dssp TSBHHHHHHHTTT---C--HHHHHH-HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTC
T ss_pred hCCHHHHHHHHHH---h--hhHHHH-HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCC
Confidence 4788898876432 1 112222 34444566642 57899999999999999999999887 499999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 97 D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
|+..+..++++|+++++ .|.|||+||||++.+..||++++
T Consensus 578 D~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~~~~d~i~~ 617 (670)
T 3ux8_A 578 HVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIKTADYIID 617 (670)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHhCCEEEE
Confidence 99999999999999975 48999999999999877999863
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=6.4e-27 Score=201.39 Aligned_cols=125 Identities=33% Similarity=0.419 Sum_probs=99.3
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHH--H-HcCCCC-C----CCCCCCCChHHHHHHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ--L-VLDLPP-G----NQLCSTLSGGQARRVSIAVT 79 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~-~----~~~~~~LS~G~kqrv~ia~a 79 (137)
++||||+|+|.+|+. |++||+.|+.. ..+.+++.++++... + .-.++. . .....+||||||||++||||
T Consensus 492 ~~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARA 568 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNC-TIEENISLGKE--GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARA 568 (1321)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHHTTCT--TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHH
T ss_pred hcccccCCcceeeCC-chhHHHhhhcc--cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHH
Confidence 479999999999986 99999987632 223444444443321 1 112232 2 34557899999999999999
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccccC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~~ 137 (137)
++++|+++|||||||+||+.+...+.+.|.++. +|+|+|++||++..+..||+|.+
T Consensus 569 l~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~~aD~Iiv 624 (1321)
T 4f4c_A 569 LVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIRNADLIIS 624 (1321)
T ss_dssp HTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTTTCSEEEE
T ss_pred HccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHHhCCEEEE
Confidence 999999999999999999999999999999886 37999999999999999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=2.8e-26 Score=191.63 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=99.7
Q ss_pred cEEEEeccC-CCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 9 MLGFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 9 ~i~~~~q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+++|++|++ .+++.+|+.||+.+ ...+. ++.++.+++.+++. . .++++.+||||||||++|||||+.+|+
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~ 568 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNAD 568 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEcccccccccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 478999875 67888999999875 22221 44566777788884 3 588999999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
+|||||||+|||+.++..+.+.|++ .|.|||++|||++++.. ||++.
T Consensus 569 lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii 616 (986)
T 2iw3_A 569 ILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYII 616 (986)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEE
T ss_pred EEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEE
Confidence 9999999999999999999999987 37899999999999988 89875
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.3e-26 Score=184.61 Aligned_cols=89 Identities=22% Similarity=0.359 Sum_probs=80.2
Q ss_pred HHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 47 IKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 47 ~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+.+++.+++.. .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|++++ + |.|||++|||
T Consensus 119 ~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHd 196 (538)
T 3ozx_A 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHD 196 (538)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSC
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeC
Confidence 445666777754 789999999999999999999999999999999999999999999999999996 3 8999999999
Q ss_pred HHHHHh-cccccC
Q psy17960 126 IEEARQ-ADMREL 137 (137)
Q Consensus 126 ~~~~~~-~d~~~~ 137 (137)
++++.. ||++++
T Consensus 197 l~~~~~~~d~i~v 209 (538)
T 3ozx_A 197 LIVLDYLTDLIHI 209 (538)
T ss_dssp HHHHHHHCSEEEE
T ss_pred hHHHHhhCCEEEE
Confidence 999988 898763
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-25 Score=180.78 Aligned_cols=92 Identities=21% Similarity=0.274 Sum_probs=83.6
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 45 AVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 45 ~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
+.++.+++.+++.. .++++.+||||||||++||+||+.+|++|||||||+|||+.++..+.++++++++ .|.|||++|
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vt 278 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVE 278 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEEC
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 45667777888865 7899999999999999999999999999999999999999999999999999975 488999999
Q ss_pred CCHHHHHh-cccccC
Q psy17960 124 HYIEEARQ-ADMREL 137 (137)
Q Consensus 124 H~~~~~~~-~d~~~~ 137 (137)
||++++.. ||++++
T Consensus 279 Hdl~~~~~~~drv~v 293 (608)
T 3j16_B 279 HDLSVLDYLSDFVCI 293 (608)
T ss_dssp SCHHHHHHHCSEEEE
T ss_pred CCHHHHHHhCCEEEE
Confidence 99999998 998863
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=3.1e-25 Score=184.78 Aligned_cols=107 Identities=29% Similarity=0.384 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCCC
Q psy17960 23 FTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGVD 97 (137)
Q Consensus 23 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gLD 97 (137)
+|+.|++.|+.. . . . ......++..+++.. .++++.+||||||||++|||||+.+| ++|||||||+|||
T Consensus 767 ~tv~eal~f~~~---~-~-~-~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 767 MTVDEALEFFKN---I-P-S-IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp SBHHHHHHHTTT---C-H-H-HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred CCHHHHHHHHhc---c-h-h-HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 567777665421 1 1 1 223445666777753 47889999999999999999999876 7999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 98 PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+..++.+++.|+++.+ .|.|||+||||++++..||+|.
T Consensus 841 ~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 841 FEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVIKNADHII 878 (916)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEE
Confidence 9999999999999975 5899999999999998899985
No 60
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.91 E-value=5.5e-25 Score=148.97 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=67.8
Q ss_pred CCCCCCCCChHHHHHHHHH------HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 59 GNQLCSTLSGGQARRVSIA------VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia------~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
.++++.+||||||||++|| +|++.+|+++||||||+|||+.++..+.+.+.++.++ |.|||++||+++....|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhC
Confidence 3678899999999999876 8999999999999999999999999999999998654 78999999999544448
Q ss_pred cccc
Q psy17960 133 DMRE 136 (137)
Q Consensus 133 d~~~ 136 (137)
|++.
T Consensus 130 d~ii 133 (148)
T 1f2t_B 130 DHVI 133 (148)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 8864
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=1.2e-23 Score=175.25 Aligned_cols=114 Identities=23% Similarity=0.322 Sum_probs=94.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--C
Q psy17960 20 FEEFTISETFAFFSKLYNIPR----------SSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--D 85 (137)
Q Consensus 20 ~~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~ 85 (137)
+..+||.|++.|+..+ .++. +++.++++ ++..+|+.. .++++.+|||||+||++||++|+.+| +
T Consensus 449 ~~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl~-~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRLG-FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HHTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHHH-HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 3458999999985443 4443 22334443 356778863 58999999999999999999999985 9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|||||||+|||+...+.++++|+++++ .|.|||+|+||++++..||+++
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~~ADrIi 576 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLI 576 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHHHSCSEEE
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEE
Confidence 9999999999999999999999999974 6899999999999988899985
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=3.9e-24 Score=178.25 Aligned_cols=115 Identities=31% Similarity=0.446 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCCC-
Q psy17960 19 LFEEFTISETFAFFSKLYNIPR----------SSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPD- 85 (137)
Q Consensus 19 l~~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p~- 85 (137)
-+..+++.+++.+.... ..+. .+..+.. ..+..+|+.. .++++.+|||||+||++||+||+.+|+
T Consensus 408 ~~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~-~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~ 485 (916)
T 3pih_A 408 EFTELSISEELEFLKNL-NLTEREREIVGELLKEIEKRL-EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTG 485 (916)
T ss_dssp HHHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHHHH-HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCS
T ss_pred HhhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHHHH-HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 34567899998875432 2211 1112222 3455677753 589999999999999999999999887
Q ss_pred -eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 86 -IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 86 -illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+|||||||+|||+.....++++|+++++ .|.|||+||||++++..||+++
T Consensus 486 ~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~~~~~~aD~ii 536 (916)
T 3pih_A 486 VIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDEEVIRNADHII 536 (916)
T ss_dssp CEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCHHHHHTCSEEE
T ss_pred cEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEE
Confidence 9999999999999999999999999975 5899999999999998899875
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=2.4e-23 Score=172.24 Aligned_cols=90 Identities=29% Similarity=0.354 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC---CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEE
Q psy17960 46 VIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS---PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120 (137)
Q Consensus 46 ~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~---p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi 120 (137)
....+++.+++.. .++++.+||||||||++||++|+.+ |++|||||||+|||+..+..+.++|+++.+ .|.|||
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVI 787 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVI 787 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 4566777888865 4789999999999999999999996 699999999999999999999999999975 589999
Q ss_pred EEcCCHHHHHhccccc
Q psy17960 121 ITTHYIEEARQADMRE 136 (137)
Q Consensus 121 ~~tH~~~~~~~~d~~~ 136 (137)
++|||++++..||++.
T Consensus 788 visHdl~~i~~aDrii 803 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVL 803 (842)
T ss_dssp EECCCHHHHTTCSEEE
T ss_pred EEcCCHHHHHhCCEEE
Confidence 9999999996699875
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.90 E-value=1.5e-23 Score=174.95 Aligned_cols=115 Identities=23% Similarity=0.316 Sum_probs=93.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcC--C
Q psy17960 19 LFEEFTISETFAFFSKLYNIPR----------SSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHS--P 84 (137)
Q Consensus 19 l~~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~--p 84 (137)
-+..+||.|.+.|. ...+++. +++.+.++ ++..+|+.. .++++.+|||||+||++||++|+.+ |
T Consensus 465 q~~~ltV~e~l~f~-enl~l~~~~~~i~~~i~~ei~~Rl~-~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~ 542 (993)
T 2ygr_A 465 EVCELSIADCADFL-NALTLGPREQAIAGQVLKEIRSRLG-FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVG 542 (993)
T ss_dssp CSSHHHHHHHHHTT-TTTTSCHHHHHHHHHHHHHHHHHHH-HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCS
T ss_pred HHhhCCHHHHHHHH-HhcCCCHHHhHHHHHHHHHHHHHHH-HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCC
Confidence 45567899998874 2223443 22334443 355677753 5899999999999999999999999 5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++|||||||+|||+...+.++++|+++++ .|.|||+|+||++++..||+++
T Consensus 543 ~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~~ADrIi 593 (993)
T 2ygr_A 543 VLYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDEDTIEHADWIV 593 (993)
T ss_dssp CEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHTCSEEE
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHHHHHhCCEEE
Confidence 89999999999999999999999999975 5899999999999988899985
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.90 E-value=2.3e-23 Score=173.46 Aligned_cols=108 Identities=27% Similarity=0.421 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCC
Q psy17960 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGV 96 (137)
Q Consensus 22 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gL 96 (137)
.+|+.|++.++. .. . ... ....+++.+++.. .++++.+||||||||++||++|+.+| ++|||||||+||
T Consensus 806 ~ltv~e~l~~~~---~~-~-~~~-~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 879 (972)
T 2r6f_A 806 DMTVEDALDFFA---SI-P-KIK-RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879 (972)
T ss_dssp TSBHHHHHHHTC---SC-H-HHH-HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred hcCHHHHHHHHh---cc-h-hHH-HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence 356777766532 11 1 122 2345677788854 57899999999999999999999875 999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 97 D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|+..+..+++.|+++.+ .|.|||++|||++++..||++.
T Consensus 880 D~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 880 HVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp CHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHhCCEEE
Confidence 99999999999999975 5899999999999987799875
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=6.7e-24 Score=162.04 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=70.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLL------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
++++.+||||||||++||+||+ .+|++|||||||+|||+..+..+++.++++++ .|.|||+||||++.+..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCC
Confidence 4688899999999999999999 79999999999999999999999999999975 5899999999999976699
Q ss_pred ccc
Q psy17960 134 MRE 136 (137)
Q Consensus 134 ~~~ 136 (137)
++.
T Consensus 353 ~~~ 355 (365)
T 3qf7_A 353 RKL 355 (365)
T ss_dssp CEE
T ss_pred EEE
Confidence 875
No 67
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.89 E-value=6.5e-23 Score=171.22 Aligned_cols=107 Identities=28% Similarity=0.374 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC---CeEEEcCCCCCCC
Q psy17960 23 FTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP---DIIVLDEPTSGVD 97 (137)
Q Consensus 23 ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p---~illlDEPt~gLD 97 (137)
+|+.|++.++.. . . ... ....+++.+++.. .++++.+||||||||++||++|+.+| ++|||||||+|||
T Consensus 825 ltv~e~l~~~~~---~-~-~~~-~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD 898 (993)
T 2ygr_A 825 MSIEEAAEFFEP---I-A-GVH-RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLH 898 (993)
T ss_dssp SBHHHHHHHSTT---C-H-HHH-HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCC
T ss_pred ccHHHHHHHhhc---c-h-HHH-HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCC
Confidence 466666655321 1 1 122 2345667777753 57899999999999999999999875 9999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 98 PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+..+..+++.|+++.+ .|.|||++|||++++..||++.
T Consensus 899 ~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i~~aDrIi 936 (993)
T 2ygr_A 899 FDDIRKLLNVINGLVD-KGNTVIVIEHNLDVIKTSDWII 936 (993)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHhCCEEE
Confidence 9999999999999975 5899999999999987799875
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.88 E-value=7.1e-23 Score=171.26 Aligned_cols=89 Identities=29% Similarity=0.344 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCC---CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEE
Q psy17960 45 AVIKDLQLVLDLPP---GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121 (137)
Q Consensus 45 ~~~~~~~~~~~l~~---~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~ 121 (137)
+.++.+++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+...+.+.|+++ +.|||+
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIi 953 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVII 953 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEE
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEE
Confidence 34566777888853 37889999999999999999999999999999999999999999999888654 469999
Q ss_pred EcCCHHHHHh-cccccC
Q psy17960 122 TTHYIEEARQ-ADMREL 137 (137)
Q Consensus 122 ~tH~~~~~~~-~d~~~~ 137 (137)
+|||++++.. ||++.+
T Consensus 954 ISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 954 ITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp ECSCHHHHTTTCCEEEC
T ss_pred EECCHHHHHHhCCEEEE
Confidence 9999999987 998753
No 69
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.87 E-value=6e-22 Score=163.97 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCCC--CCCCCCCCChHHHHHHHHHHHHhcCC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE
Q psy17960 43 VEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118 (137)
Q Consensus 43 ~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kqrv~ia~al~~~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t 118 (137)
+...++ .+..+|+.. .++++.+|||||+|||+||++|+.+| ++|||||||+|||+...+.++++++++++ .|.|
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~T 433 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNS 433 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCE
Confidence 344454 355778864 58999999999999999999999999 59999999999999999999999999975 5899
Q ss_pred EEEEcCCHHHHHhccccc
Q psy17960 119 IIITTHYIEEARQADMRE 136 (137)
Q Consensus 119 vi~~tH~~~~~~~~d~~~ 136 (137)
||+|+||++++..||++.
T Consensus 434 VIvVeHdl~~l~~aD~ii 451 (842)
T 2vf7_A 434 LFVVEHDLDVIRRADWLV 451 (842)
T ss_dssp EEEECCCHHHHTTCSEEE
T ss_pred EEEEcCCHHHHHhCCEEE
Confidence 999999999887799875
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.85 E-value=2.2e-21 Score=149.35 Aligned_cols=69 Identities=30% Similarity=0.403 Sum_probs=65.0
Q ss_pred CChHHHHHHHHHHHHhcCC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 66 LSGGQARRVSIAVTLLHSP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
||||||||++||++++.+| ++|||||||+|||+..+..+.+.|+++. + |.|||+|||+++.+..||+++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEE
Confidence 5999999999999999999 9999999999999999999999999986 3 789999999998887799875
No 71
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.84 E-value=6.9e-21 Score=131.82 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=66.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.+++..||||||||++||++++. .|+++||||||+|||+.++..+.+.|+++.+ +.++|++||+......||++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHHhCCEE
Confidence 56678999999999999999974 4699999999999999999999999999863 46899999998887779987
Q ss_pred c
Q psy17960 136 E 136 (137)
Q Consensus 136 ~ 136 (137)
.
T Consensus 137 ~ 137 (173)
T 3kta_B 137 I 137 (173)
T ss_dssp E
T ss_pred E
Confidence 4
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=2.6e-21 Score=153.36 Aligned_cols=74 Identities=30% Similarity=0.380 Sum_probs=69.0
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhcCC--CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 61 QLCSTL-SGGQARRVSIAVTLLHSP--DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 61 ~~~~~L-S~G~kqrv~ia~al~~~p--~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+++.+| ||||+||++||+|++.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||+++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~~ 468 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHHY 468 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEE
Confidence 456788 999999999999999999 99999999999999999999999999974 789999999999988899875
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=4.1e-21 Score=145.16 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=66.8
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 60 NQLCSTLSGGQAR------RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 60 ~~~~~~LS~G~kq------rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
++++.+||||||| |+++|++++.+|++|||||||+|||+..+..+.+.|+++.++ |.|||++|||.+....||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCC
Confidence 5678999999999 677888888999999999999999999999999999998654 789999999977555588
Q ss_pred ccc
Q psy17960 134 MRE 136 (137)
Q Consensus 134 ~~~ 136 (137)
++.
T Consensus 322 ~~~ 324 (339)
T 3qkt_A 322 HVI 324 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=3.6e-20 Score=139.04 Aligned_cols=75 Identities=29% Similarity=0.331 Sum_probs=66.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
.+.++.+||+|||||++||+||+ .+|+++||||||++||+..++.+.+.++++. .|.+||++||+++....||+
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHhhCce
Confidence 45678899999999999999997 6789999999999999999999999999984 37899999999765555887
Q ss_pred c
Q psy17960 135 R 135 (137)
Q Consensus 135 ~ 135 (137)
+
T Consensus 291 ~ 291 (322)
T 1e69_A 291 L 291 (322)
T ss_dssp E
T ss_pred E
Confidence 5
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=4.3e-21 Score=132.16 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=64.9
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHH----------------HHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL----------------LAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~----------------~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
....|+|||||++||+|++.+|++++|||||++||+. .+..+.+.+++++++ |.|+|++|||+
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 3456999999999999999999999999999999999 668899999888765 89999999999
Q ss_pred HHHHhcccc
Q psy17960 127 EEARQADMR 135 (137)
Q Consensus 127 ~~~~~~d~~ 135 (137)
+++..++++
T Consensus 160 ~~~~~~~~~ 168 (171)
T 4gp7_A 160 EEVEEVVFE 168 (171)
T ss_dssp HHHHHEEEE
T ss_pred HHhhhhhhc
Confidence 999887654
No 76
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.3e-22 Score=155.09 Aligned_cols=119 Identities=11% Similarity=0.029 Sum_probs=84.4
Q ss_pred CCcEEEEeccCC---CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHH--Hh
Q psy17960 7 ASMLGFMPQEIA---LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVT--LL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~---l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~a--l~ 81 (137)
++.++|+||+.. +++.+|+.+|+ ++......... .+.+..++..+++..... +.+||||||||+++||| |+
T Consensus 178 ~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~--~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 178 QQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATL--LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp TSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCS--SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeeeeccchhhcccccccchhhhh-cccccccCcch--HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc
Confidence 467899999884 34457899888 54321111100 112223444556543212 78999999999999999 99
Q ss_pred cCCCe----EEEcC-CCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH------HHHh-ccc
Q psy17960 82 HSPDI----IVLDE-PTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE------EARQ-ADM 134 (137)
Q Consensus 82 ~~p~i----lllDE-Pt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~------~~~~-~d~ 134 (137)
.+|++ +|||| ||++||+. .+.+.+++++ .+.|++++||+.+ ++.. ||+
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99999 99999 99999999 5555555544 3678999999987 6666 887
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.76 E-value=6.3e-19 Score=122.37 Aligned_cols=72 Identities=7% Similarity=0.053 Sum_probs=62.9
Q ss_pred CCCCCCCCChHHHHHHHHHHH-----HhcCCCeEEEcC--CCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc---CCHHH
Q psy17960 59 GNQLCSTLSGGQARRVSIAVT-----LLHSPDIIVLDE--PTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT---HYIEE 128 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~a-----l~~~p~illlDE--Pt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t---H~~~~ 128 (137)
.++++.+||||||||+++|+| ++.+|+++|||| ||++||+..++.+.+.+.+ .+.|+|++| |+.++
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchH
Confidence 467788999999999999996 999999999999 9999999999999988854 366788887 59899
Q ss_pred HHh-ccc
Q psy17960 129 ARQ-ADM 134 (137)
Q Consensus 129 ~~~-~d~ 134 (137)
+.. |++
T Consensus 146 ~~~i~~r 152 (178)
T 1ye8_A 146 VKEIRRL 152 (178)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 887 765
No 78
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=3.3e-18 Score=132.74 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHh----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLL----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
.+++..|||||||+++||++|+ .+|+++|||||+++||+..+..+.+.++++.. .+.++|++||+......||++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMFEKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHHTTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEE
Confidence 3456679999999999999999 57999999999999999999999999998853 478999999998877778887
Q ss_pred c
Q psy17960 136 E 136 (137)
Q Consensus 136 ~ 136 (137)
+
T Consensus 407 ~ 407 (430)
T 1w1w_A 407 V 407 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 79
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.73 E-value=3.8e-18 Score=130.28 Aligned_cols=74 Identities=30% Similarity=0.327 Sum_probs=63.3
Q ss_pred CCCCCCChHHHHHH------HHHHHHhcC-CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 61 QLCSTLSGGQARRV------SIAVTLLHS-PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 61 ~~~~~LS~G~kqrv------~ia~al~~~-p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
.++..|||||+||+ ++|++++.+ |+++||||||+|||+..+..+.+.+.++. . +.+||++||+++....||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~~~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRELEDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGGGGGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHHHHhhCC
Confidence 55679999999988 567888999 99999999999999999999999999874 2 468999999987544488
Q ss_pred ccc
Q psy17960 134 MRE 136 (137)
Q Consensus 134 ~~~ 136 (137)
++.
T Consensus 354 ~~~ 356 (371)
T 3auy_A 354 VII 356 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.71 E-value=1.3e-19 Score=128.68 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 69 G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
|||||++|||||+.+|++|||||||+| ++..+.+.|+++ + .|.||| +|||++++..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 888899999887 4 488999 9999998765
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.69 E-value=7.6e-18 Score=128.33 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=60.9
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 60 NQLCS-TLSGGQARRVSIAVTLL---------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 60 ~~~~~-~LS~G~kqrv~ia~al~---------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
++++. .||+|||||++||++|+ .+|+++||||||++||+..+..+++.+.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc-
Confidence 55677 79999999999999999 8999999999999999999999999998763 699999994 43
Q ss_pred Hhccccc
Q psy17960 130 RQADMRE 136 (137)
Q Consensus 130 ~~~d~~~ 136 (137)
.||+++
T Consensus 333 -~~~~i~ 338 (359)
T 2o5v_A 333 -GAALTL 338 (359)
T ss_dssp -TCSEEE
T ss_pred -cCCEEE
Confidence 566553
No 82
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.64 E-value=2.1e-20 Score=132.07 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=86.2
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHH----H--HhcCCChhHHHHHHHHH------HHHcCCCC-CCCCCCCCChHHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFF----S--KLYNIPRSSVEAVIKDL------QLVLDLPP-GNQLCSTLSGGQARRV 74 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~----~--~~~~~~~~~~~~~~~~~------~~~~~l~~-~~~~~~~LS~G~kqrv 74 (137)
+.++|+||++.+|+.+|+.+++..+ . ..++.+..+.++.++.. ++.+++.. .++++.+||
T Consensus 64 ~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS------- 136 (207)
T 1znw_A 64 DGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT------- 136 (207)
T ss_dssp BTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-------
T ss_pred CCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-------
Confidence 4689999998878777777765321 1 12233333344444333 22222222 355666777
Q ss_pred HHHHHHhcCCCeEEEcCCCCCC----CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-cccccC
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGV----DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMREL 137 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gL----D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~~ 137 (137)
+++.+|++++|||||+|+ |+..++.+.+.+++++++.|.|++++|||++++.. ||++.+
T Consensus 137 ----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 137 ----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp ----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred ----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 899999999999999998 78899999999999976568999999999999988 999864
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.61 E-value=1.1e-18 Score=135.00 Aligned_cols=114 Identities=6% Similarity=-0.051 Sum_probs=86.4
Q ss_pred EEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChH--HHHHHHHHHHHhc------
Q psy17960 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGG--QARRVSIAVTLLH------ 82 (137)
Q Consensus 11 ~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G--~kqrv~ia~al~~------ 82 (137)
++++|++ .++.+|+.||..++. .. ..++.+++.+++...+..+. ||+| |+||+.||++++.
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~-----~~----~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~ 179 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGS-----TN----FPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFY 179 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGG-----SS----CCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEE
T ss_pred EEecccc-ccCCeeehHhhcccc-----hH----HHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeE
Confidence 7899985 577789988865431 11 12344555555543333444 9999 9999999999999
Q ss_pred ----CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh----cC----CcEEEEEcCCHHH--HHh-cccc
Q psy17960 83 ----SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH----TD----KRTIIITTHYIEE--ARQ-ADMR 135 (137)
Q Consensus 83 ----~p~illlDEPt~gLD~~~~~~i~~~l~~~~~----~~----~~tvi~~tH~~~~--~~~-~d~~ 135 (137)
+|++++|||||+|||+..+.++.+.++++.+ +. ..+|+++||+++. ++. +|++
T Consensus 180 lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 180 FVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp EEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred EEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999999999999999999999999998841 22 3678999999886 666 6655
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.52 E-value=2.7e-15 Score=119.08 Aligned_cols=76 Identities=9% Similarity=-0.032 Sum_probs=68.8
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHH-----HHHHHHHHHHHHhhcCCcEEEEEcCCH-------
Q psy17960 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL-----LAHYFWKYLNRLAHTDKRTIIITTHYI------- 126 (137)
Q Consensus 59 ~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~-----~~~~i~~~l~~~~~~~~~tvi~~tH~~------- 126 (137)
.+.++.+||+||+||+.+|+++..+|+++++| ||+|||.. .++.+.++++.+++ .|.|||++||+.
T Consensus 347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~ 424 (525)
T 1tf7_A 347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHS 424 (525)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCS
T ss_pred EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCccc
Confidence 56788999999999999999999999999999 99999999 99999999999874 589999999998
Q ss_pred ---HHHHh-ccccc
Q psy17960 127 ---EEARQ-ADMRE 136 (137)
Q Consensus 127 ---~~~~~-~d~~~ 136 (137)
..+.. ||++.
T Consensus 425 ~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 425 ITDSHISTITDTII 438 (525)
T ss_dssp SCSSCCTTTCSEEE
T ss_pred ccCcccceeeeEEE
Confidence 66666 78764
No 85
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=4.2e-14 Score=118.28 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
.....++|+||+|++.++++ +.+|+++||||||+|+|+.....+. .+++.+.++.|+|+|++||+++.+..+|+
T Consensus 730 ~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 730 YKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp ----CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 45667899999999999999 8999999999999999999999987 77887765568999999999988765654
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.44 E-value=2.6e-13 Score=113.80 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCCCCCChHHHHHHHHHHHH--hcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 60 NQLCSTLSGGQARRVSIAVTL--LHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al--~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+.....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ ..+++.+.++.|+++|++||+.+....||++.
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~ 795 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP 795 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc
Confidence 344567899999999999988 999999999999999999998887 77778776545899999999988776688753
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.43 E-value=3.2e-15 Score=111.45 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=72.3
Q ss_pred cEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC-
Q psy17960 9 MLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD- 85 (137)
Q Consensus 9 ~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~- 85 (137)
.++|++|++. +++.+|+++|+.+... .+.. ..+.+..|+.. .++++.+|| +||++||||++.+|+
T Consensus 155 ~i~~v~q~~~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e 222 (302)
T 3b9q_A 155 GCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNE 222 (302)
T ss_dssp TCEEECCC--CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSE
T ss_pred CceEEEecCCccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCe
Confidence 5899999988 8888899999987532 1111 01233445533 456778899 999999999999999
Q ss_pred -eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 86 -IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 86 -illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
+|+|| ||+|||+..+ ++++.+..|.|+|++||
T Consensus 223 ~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 223 ILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 255 (302)
T ss_dssp EEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred eEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence 99999 9999999855 24454445899999999
No 88
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.42 E-value=1e-15 Score=112.44 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=72.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
.+.+||++|++.+++.+||.||+.++....+. ...+.+..+... ...+..+.+|||||+||+++|||++. +
T Consensus 46 ~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~---~~~~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---l 116 (270)
T 3sop_A 46 IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE---NCWEPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---L 116 (270)
T ss_dssp CCEEEESCC----CCEEEEECCCC--CCSBCT---TCSHHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---E
T ss_pred eeeeEEEeecCCCcCCceEEechhhhhhcccH---HHHHHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---e
Confidence 35799999999999999999999876433221 111122222210 11245567899999999999999886 9
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+++|||+.|||+.. .++++.+.+ . .+||++.|..+.+
T Consensus 117 llldep~~gL~~lD----~~~l~~L~~-~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 117 YFISPTGHSLRPLD----LEFMKHLSK-V-VNIIPVIAKADTM 153 (270)
T ss_dssp EEECCCSSSCCHHH----HHHHHHHHT-T-SEEEEEETTGGGS
T ss_pred EEEecCCCcCCHHH----HHHHHHHHh-c-CcEEEEEeccccC
Confidence 99999999999987 456666654 3 7888888877644
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.41 E-value=9.1e-16 Score=114.89 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=76.6
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.+++++|++.+++. |+.+|+.+.. .++.+.....+.+..+++.++....+.++.+|||||+||+++|++++.+|+++
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~il 198 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDIL 198 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEE
Confidence 569999999988887 9999976421 12332222223334444444422245678899999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
|+|||++.+|+.. ..+.+..+ .+|+++|+.+..
T Consensus 199 IlDep~~~~d~~~--------~~l~~~~D-~~I~V~a~~~~~ 231 (312)
T 3aez_A 199 ILEGLNVLQTGPT--------LMVSDLFD-FSLYVDARIEDI 231 (312)
T ss_dssp EEECTTTTCCCSS--------CCGGGGCS-EEEEEEECHHHH
T ss_pred EECCccccCCcch--------HHHHHhcC-cEEEEECCHHHH
Confidence 9999999998521 12333334 457778887764
No 90
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.37 E-value=2.5e-14 Score=108.89 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=74.5
Q ss_pred cEEEEeccCC-CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCC-
Q psy17960 9 MLGFMPQEIA-LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPD- 85 (137)
Q Consensus 9 ~i~~~~q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~- 85 (137)
.++|++|++. +++..++++|+.+... .+.. ..+.+..|+.. .++++.+|| +||++||||++.+|+
T Consensus 212 ~i~~v~q~~~~~~p~~tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e 279 (359)
T 2og2_A 212 GCEIVVAEGDKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNE 279 (359)
T ss_dssp TCEEECCSSSSCCHHHHHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSE
T ss_pred CeEEEEecccccChhhhHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCc
Confidence 5899999988 8888899999987542 1111 01233445533 456778899 999999999999999
Q ss_pred -eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 86 -IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 86 -illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+|+|| ||+|+|+..+. +.+.+..|.|+|++||.
T Consensus 280 ~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 280 ILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp EEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred eEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 99999 99999998653 34444458999999993
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.36 E-value=1.4e-12 Score=110.29 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=62.0
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHH-HHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccccc
Q psy17960 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADMRE 136 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~-~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~~~ 136 (137)
...++|+|+++ +++|++++.+|+++|||||++|+|+... ..++.+++.+.++.|+++|++||+++++.. +|++.
T Consensus 848 ~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~ 923 (1022)
T 2o8b_B 848 GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA 923 (1022)
T ss_dssp --CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS
T ss_pred chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcce
Confidence 34567877765 9999999999999999999999999985 557899999875458999999999999987 77653
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.27 E-value=7.3e-12 Score=91.76 Aligned_cols=78 Identities=13% Similarity=0.042 Sum_probs=59.5
Q ss_pred HHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCC--CCCHHH---HHHHHHHHHHHhhcCCcEEEEE
Q psy17960 49 DLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS--GVDPLL---AHYFWKYLNRLAHTDKRTIIIT 122 (137)
Q Consensus 49 ~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~--gLD~~~---~~~i~~~l~~~~~~~~~tvi~~ 122 (137)
.+.+.+.+.. .++++..||+|+++++ ++++.+|+++++|||++ ++|... ...++..|+++.++.|+|||++
T Consensus 101 ~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i 177 (279)
T 1nlf_A 101 AVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL 177 (279)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred hccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3445555533 5678899999997765 68888999999999999 999744 4778888888865568999999
Q ss_pred cCCHHHH
Q psy17960 123 THYIEEA 129 (137)
Q Consensus 123 tH~~~~~ 129 (137)
+|+....
T Consensus 178 ~H~~~~~ 184 (279)
T 1nlf_A 178 HHASKGA 184 (279)
T ss_dssp EEC----
T ss_pred ecCCCcc
Confidence 9998775
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.26 E-value=6e-12 Score=92.83 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=51.0
Q ss_pred CCCCCChHH-HHHHHHHHHHhcCCCeEEEcCCCC---C---CCH-HHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 62 LCSTLSGGQ-ARRVSIAVTLLHSPDIIVLDEPTS---G---VDP-LLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 62 ~~~~LS~G~-kqrv~ia~al~~~p~illlDEPt~---g---LD~-~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.+.++|.++ +|++. |+++..+|+++++||||+ + +|. .....+.+.|++++++.|+|||++||+.
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 346789998 67777 999999999999999999 5 555 6778899999998766689999999995
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.20 E-value=1.9e-11 Score=86.26 Aligned_cols=72 Identities=21% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCChHHHHHHHHHHHHhcCCC--eEEEcCCCCCC--CHHHHHHHHHHHHHHhhcCCcEEEEEcCCH--------HHHHh-
Q psy17960 65 TLSGGQARRVSIAVTLLHSPD--IIVLDEPTSGV--DPLLAHYFWKYLNRLAHTDKRTIIITTHYI--------EEARQ- 131 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~--illlDEPt~gL--D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~--------~~~~~- 131 (137)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+++.++++.++.|.|||+++|+. ..+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 448999888888888888999 99999999887 999999999999998766789999999999 34666
Q ss_pred ccccc
Q psy17960 132 ADMRE 136 (137)
Q Consensus 132 ~d~~~ 136 (137)
||++.
T Consensus 183 ~d~vi 187 (235)
T 2w0m_A 183 ADGII 187 (235)
T ss_dssp CSEEE
T ss_pred eeEEE
Confidence 78764
No 95
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.20 E-value=7.1e-12 Score=94.37 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|||+||++||+||..+|+++++||||+ .++.+.++.+. ..+.|+++++|+.+....+|++.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~-~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLC-SGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHH-TTCCCEEEEEECSSHHHHHHHHH
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHh-cCCCEEEEEEcccHHHHHhhhhe
Confidence 899999999999999999999999998 23567777775 33458999999999655588874
No 96
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.14 E-value=4.9e-11 Score=98.36 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHHH--hcCCCeEEEcCC---CCCCCHHHH-HHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 63 CSTLSGGQARRVSIAVTL--LHSPDIIVLDEP---TSGVDPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al--~~~p~illlDEP---t~gLD~~~~-~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
...+|+|+++++.+++++ +.+|+++||||| |++||+.+. ..+.+.+.+ .|.++|++||+.+.+..+
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELTALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHTCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHHhh
Confidence 346899999999999999 999999999999 999999876 467777755 378999999999886533
No 97
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.10 E-value=3.5e-14 Score=99.84 Aligned_cols=116 Identities=12% Similarity=0.047 Sum_probs=83.6
Q ss_pred cEEEEeccCCCC--CCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-CCCCCCCCCChHH----HHHHHHHHHHh
Q psy17960 9 MLGFMPQEIALF--EEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSGGQ----ARRVSIAVTLL 81 (137)
Q Consensus 9 ~i~~~~q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LS~G~----kqrv~ia~al~ 81 (137)
.++|++|++.++ ..+++.++..+.. +.+.....+.+...++.+++. ..+.++.++|+|+ +||++++++++
T Consensus 33 ~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li 109 (211)
T 3asz_A 33 RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI 109 (211)
T ss_dssp GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred CeEEEecCccccCcccccHHHhcCCCC---CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE
Confidence 489999998776 4578888765421 111111122333333444443 2455788999997 46889999999
Q ss_pred cCCCeEEEcCCCCC-------CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSG-------VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~g-------LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+|.++++||||++ ||+.....+...+.+..++.|.|++.++|++.
T Consensus 110 ~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 110 LEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999 99999999999988764446889999999853
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.08 E-value=2.7e-11 Score=87.20 Aligned_cols=108 Identities=9% Similarity=0.103 Sum_probs=73.1
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCCh--h-HHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcC
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPR--S-SVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHS 83 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~ 83 (137)
.+.++|++|+. +++.+|+.+++.+....+.... . +.....+.+.... ...+.++..||+||+||+.+ ++++.+
T Consensus 58 ~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~--~~~~~~~~~ls~g~~~r~~~-~~~~~~ 133 (245)
T 2jeo_A 58 QRKVVILSQDR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV--EGKTVEVPTYDFVTHSRLPE-TTVVYP 133 (245)
T ss_dssp GCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH--TTCCEEECCEETTTTEECSS-CEEECC
T ss_pred CCceEEEeCCc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHH--CCCCeecccccccccCccCc-eEEecC
Confidence 45689999985 7778899999876543322221 1 1111222222111 23467888999999999988 588889
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
|+++|+|||....+.. +.++ .+.+|+++||+...+
T Consensus 134 ~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 134 ADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSDVRL 168 (245)
T ss_dssp CSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHHHHH
T ss_pred CCEEEEeCccccccHH--------HHHh---cCeEEEEECCHHHHH
Confidence 9999999999888764 2222 378999999984444
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.08 E-value=5.2e-11 Score=85.04 Aligned_cols=69 Identities=16% Similarity=-0.016 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEcCCCCCCC-----HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH---------Hh-
Q psy17960 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD-----PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA---------RQ- 131 (137)
Q Consensus 67 S~G~kqrv~ia~al~~~p~illlDEPt~gLD-----~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~---------~~- 131 (137)
+.++.........-..+|+++++||||+++| +..++.+.++++.+++ .|+|||++||+++++ ..
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhE
Confidence 3445444444555568999999999999998 6777779999998865 489999999999998 44
Q ss_pred c-cccc
Q psy17960 132 A-DMRE 136 (137)
Q Consensus 132 ~-d~~~ 136 (137)
| |++.
T Consensus 198 ~aD~vi 203 (251)
T 2ehv_A 198 IARGVI 203 (251)
T ss_dssp GCSEEE
T ss_pred eeeEEE
Confidence 6 8765
No 100
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.08 E-value=1.2e-10 Score=96.57 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHH-HHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF-WKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i-~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
..++|+|+++ ++.+...+.+|+++|||||++|+|+.....+ ..+++.+.++.|.++|++||+.+.+..||+.
T Consensus 667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 3456777764 4455556899999999999999999887775 7888888754589999999999876657654
No 101
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.03 E-value=8.9e-13 Score=93.73 Aligned_cols=72 Identities=13% Similarity=0.027 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHH-----HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc------CCcEEEEEcCCHHHHHh-
Q psy17960 64 STLSGGQARRVSI-----AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT------DKRTIIITTHYIEEARQ- 131 (137)
Q Consensus 64 ~~LS~G~kqrv~i-----a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~------~~~tvi~~tH~~~~~~~- 131 (137)
.+|||||+||+++ +++++..|++++||||++++|......+.+.+.+..++ .+...|+++|+++++..
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~ 200 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ 200 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence 5789999999999 89999999999999999999999888888888766433 45788999999998876
Q ss_pred cccc
Q psy17960 132 ADMR 135 (137)
Q Consensus 132 ~d~~ 135 (137)
++++
T Consensus 201 ~~~i 204 (218)
T 1z6g_A 201 LKNY 204 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 102
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.98 E-value=1.1e-12 Score=97.52 Aligned_cols=105 Identities=12% Similarity=0.094 Sum_probs=65.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
+.+++++|....+..+|+.|+..++..... .+......+.+... .++++.++|||||||+.+|||++ ++
T Consensus 63 ~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~~-----~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 63 EASTVEIEERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYIDEQ-----FERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp --CEEEEC---CCEEEEEEEEC-------------CTTHHHHHHHH-----HHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred eeEEEEecCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHHHHH-----HHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 457889998877778888888766432211 01111112222111 24567789999999999998886 99
Q ss_pred EEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 88 VLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 88 llDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
++||||+ |||+... ++++++.++.+.++|+++||+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999998 4999873 5666665444789999999984
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.98 E-value=2.8e-12 Score=99.90 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=74.5
Q ss_pred CcEEEEecc-CCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 8 SMLGFMPQE-IALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 8 ~~i~~~~q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
+.++|++|+ ..+++.+++.+|+.+...++.... ..+. ..-..+..||+|| ||+++| +.+|++
T Consensus 213 r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~-------~~v~------~~ld~l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 213 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG-------QHVL------LIMDSLTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT-------CEEE------EEEECHHHHHHHH-HHHHHH---TTCCCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC-------CCHH------HHHHhHHHHHHHH-HHHHHH---hCCCcc
Confidence 568999995 556777899999887654321100 0000 0011256799999 999999 888887
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhh---cCCc-----EEEEEcCCHHHHHhcccc
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAH---TDKR-----TIIITTHYIEEARQADMR 135 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~---~~~~-----tvi~~tH~~~~~~~~d~~ 135 (137)
|+|||+.....+.+++.++.+ +.|. ||+++|||++ ..-||++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v 325 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSA 325 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceE
Confidence 999999999999999998865 2364 9999999997 2225654
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.92 E-value=1.4e-13 Score=102.67 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=63.9
Q ss_pred EEEEeccCCCCCCCCHHH-HHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeE
Q psy17960 10 LGFMPQEIALFEEFTISE-TFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDII 87 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~il 87 (137)
++|++|++.+|+. |+++ |+.+.. ..+ ....+ +.+.+ ++. .+ +.+|||||||| |||++.+|++|
T Consensus 155 ~~~v~q~~~lf~~-ti~~~ni~~~~---~~~-~~~~~----~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iL 219 (305)
T 2v9p_A 155 LSFANHKSHFWLA-SLADTRAALVD---DAT-HACWR----YFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLL 219 (305)
T ss_dssp ECGGGTTSGGGGG-GGTTCSCEEEE---EEC-HHHHH----HHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEE
T ss_pred EEEecCccccccc-cHHHHhhccCc---ccc-HHHHH----HHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEE
Confidence 5678999888875 7776 776531 111 11222 22221 222 23 77999999999 99999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 88 llDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
| |++||+.....+.. .||++..+..||++
T Consensus 220 l----Ts~LD~~~~~~i~~---------------ltH~~~~~~~aD~i 248 (305)
T 2v9p_A 220 V----TSNIDVQAEDRYLY---------------LHSRVQTFRFEQPC 248 (305)
T ss_dssp E----EESSCSTTCGGGGG---------------GTTTEEEEECCCCC
T ss_pred E----ECCCCHHHHHHHHH---------------HhCCHHHHHhCCEE
Confidence 9 99999999888752 17877766567776
No 105
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.91 E-value=1.4e-09 Score=76.23 Aligned_cols=63 Identities=16% Similarity=0.055 Sum_probs=49.2
Q ss_pred CCChHH--HHHHHHHHHHhcC-CCeEEEcCCCCCCCHHH--------HHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 65 TLSGGQ--ARRVSIAVTLLHS-PDIIVLDEPTSGVDPLL--------AHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 65 ~LS~G~--kqrv~ia~al~~~-p~illlDEPt~gLD~~~--------~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+.|+++ ++++..+++++.+ |+++++|||++++|+.. ...+.+.|+++.++.|+|||+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 445554 5688888899986 99999999999999732 344666677776666899999999875
No 106
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.86 E-value=1.7e-11 Score=98.98 Aligned_cols=97 Identities=7% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCe
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDI 86 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~i 86 (137)
++.+||+||++.+++.+||.+|+.+.....+... .+. .. +.+.++.+....|++
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~-------------~~~--s~-----------~~i~l~i~~~~~p~L 149 (608)
T 3szr_A 96 RGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG-------------MGI--SH-----------ELITLEISSRDVPDL 149 (608)
T ss_dssp EEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------SCC--CS-----------CCEEEEEEESSSCCE
T ss_pred eeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------ccc--ch-----------HHHHHHhcCCCCCce
Confidence 3568999999999999999999987533211000 001 00 112222333458999
Q ss_pred EEEcCC------CCCCCHHHHHHHHHHHHHHh-hcCCcEEEEEcCCHHHH
Q psy17960 87 IVLDEP------TSGVDPLLAHYFWKYLNRLA-HTDKRTIIITTHYIEEA 129 (137)
Q Consensus 87 lllDEP------t~gLD~~~~~~i~~~l~~~~-~~~~~tvi~~tH~~~~~ 129 (137)
+|+||| |+|||+..+..+.++++++. +..+.++++++|+++.+
T Consensus 150 lLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 150 TLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred eEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 999999 99999999999999999964 34478899999998754
No 107
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.82 E-value=5.4e-09 Score=76.21 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
|++||++|..+|+++++|||| |+.....++ +.. . .|.+|++++|+.+....+|++.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~~-~-~g~~vl~t~H~~~~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETAL---RAA-E-TGHLVFGTLHTNTAIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HHH-H-TTCEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HHH-c-cCCEEEEEeCcchHHHHHHHHh
Confidence 899999999999999999999 888865543 333 2 4889999999988655577753
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.79 E-value=3.8e-09 Score=79.98 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHh-------cCCCeEEEcCCCCCCCHHH------------HHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 67 SGGQARRVSIAVTLL-------HSPDIIVLDEPTSGVDPLL------------AHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 67 S~G~kqrv~ia~al~-------~~p~illlDEPt~gLD~~~------------~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
|.+++|++.++++++ .+|+++++||||+++|+.. ...++..|+++.++.|+|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999998 6899999999999999852 456677777776667899999999876
Q ss_pred HHH
Q psy17960 128 EAR 130 (137)
Q Consensus 128 ~~~ 130 (137)
...
T Consensus 288 ~~~ 290 (349)
T 1pzn_A 288 RPD 290 (349)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.76 E-value=2e-09 Score=75.84 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=47.8
Q ss_pred CChHHH-HHHHHHHHHhc-------CCCeEEEcCCCCCCCHH-------H-----HHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 66 LSGGQA-RRVSIAVTLLH-------SPDIIVLDEPTSGVDPL-------L-----AHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 66 LS~G~k-qrv~ia~al~~-------~p~illlDEPt~gLD~~-------~-----~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+++++ +.+..+.+++. +|+++++|||++++|+. . ...+++.+.++.++.|+|||++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 444443 33555666555 99999999999999983 2 2367777877766668999999995
Q ss_pred HHH----HHh-ccccc
Q psy17960 126 IEE----ARQ-ADMRE 136 (137)
Q Consensus 126 ~~~----~~~-~d~~~ 136 (137)
+.. +.. ||.+.
T Consensus 180 ~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 180 QANGGHILAHSATLRV 195 (231)
T ss_dssp C---------CCSEEE
T ss_pred ccCcchhhHhhceEEE
Confidence 554 666 66653
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.76 E-value=1.1e-09 Score=81.62 Aligned_cols=104 Identities=8% Similarity=-0.082 Sum_probs=66.8
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEE
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~ill 88 (137)
.++|++|++.++|..++++|+.+.... +... .+.+..|. .+.....++..++||+++|||++.+|+.++
T Consensus 157 ~i~~v~q~~~~~p~~~v~~~v~~~~~~-~~d~--------~llDt~G~--~~~~~~~~~eLs~~r~~iaRal~~~P~~~l 225 (304)
T 1rj9_A 157 SIPVIQGPEGTDSAALAYDAVQAMKAR-GYDL--------LFVDTAGR--LHTKHNLMEELKKVKRAIAKADPEEPKEVW 225 (304)
T ss_dssp TCCEECCCTTCCHHHHHHHHHHHHHHH-TCSE--------EEECCCCC--CTTCHHHHHHHHHHHHHHHHHCTTCCSEEE
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--------EEecCCCC--CCchHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence 589999999888888999998764321 1100 01111222 122222345555899999999999999444
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 89 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
| +||+.....+.+.++.+.+..|.|+|++||+...
T Consensus 226 L-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 226 L-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp E-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred E-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 4 4444444556666677665558899999998543
No 111
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.76 E-value=9.2e-10 Score=87.32 Aligned_cols=64 Identities=20% Similarity=0.205 Sum_probs=52.6
Q ss_pred HHHHHHHHHh-cCCCeEEEcCCCC-----CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH---------Hh-cccc
Q psy17960 72 RRVSIAVTLL-HSPDIIVLDEPTS-----GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA---------RQ-ADMR 135 (137)
Q Consensus 72 qrv~ia~al~-~~p~illlDEPt~-----gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~---------~~-~d~~ 135 (137)
+.-.+..+|. .+|+++++||||+ ++|+..++.++++++++++ .|+|||++||+++++ .. ||++
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 3445555553 6899999999998 4699999999999999976 589999999999984 55 8887
Q ss_pred c
Q psy17960 136 E 136 (137)
Q Consensus 136 ~ 136 (137)
.
T Consensus 205 i 205 (525)
T 1tf7_A 205 V 205 (525)
T ss_dssp E
T ss_pred E
Confidence 5
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.68 E-value=2.1e-08 Score=76.16 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
+||+||.++|+++++|||+ |... .+.+.+... .|.+|++++|+.+.+..+||+.
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~-~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAE-TGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHH-TTCEEEEEESCSSHHHHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHh-cCCEEEEEEccChHHHHHHHHh
Confidence 9999999999999999999 6554 333334443 4899999999999986688864
No 113
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.60 E-value=5.1e-09 Score=79.32 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh-cCCc-----EEEEEcCCHHHHHh-cc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH-TDKR-----TIIITTHYIEEARQ-AD 133 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~-~~~~-----tvi~~tH~~~~~~~-~d 133 (137)
..+..||+|| |++++| +.+|++ |+|+|+.....+.+++.++.+ +.|. ||+++|||++ .. ||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 4578899999 899999 578776 899999999999999999864 4577 9999999998 33 66
Q ss_pred cc
Q psy17960 134 MR 135 (137)
Q Consensus 134 ~~ 135 (137)
++
T Consensus 235 ~v 236 (347)
T 2obl_A 235 EV 236 (347)
T ss_dssp HH
T ss_pred he
Confidence 64
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.47 E-value=5e-08 Score=67.69 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCC--CCCCCCCCChHHHHH-HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc
Q psy17960 47 IKDLQLVLDLPP--GNQLCSTLSGGQARR-VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT 114 (137)
Q Consensus 47 ~~~~~~~~~l~~--~~~~~~~LS~G~kqr-v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~ 114 (137)
+..++...+++. ...++..+|+||+|+ +..+++++.+|+++++|||||++|..+..++++.|.++.++
T Consensus 129 ~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 129 MIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 334444445542 245567899999999 89999999999999999999999999999999999987643
No 115
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=1.1e-08 Score=71.22 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCCCCCCChHHHHHH-HHHH---HHhcCCCeEEEcC--CCCCCCHHHHHHHHHHHH
Q psy17960 60 NQLCSTLSGGQARRV-SIAV---TLLHSPDIIVLDE--PTSGVDPLLAHYFWKYLN 109 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv-~ia~---al~~~p~illlDE--Pt~gLD~~~~~~i~~~l~ 109 (137)
.++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.+.+++.
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 344567999999888 4444 6899999999999 899999987666666654
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.40 E-value=4.9e-09 Score=81.22 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=56.5
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCC---
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPD--- 85 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~--- 85 (137)
.+++++|.+.+++.+|+.||+.+.....+ ........+.+.. .++.+++||++|||+++.+|+
T Consensus 76 ~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~--~~~~~~i~~~i~~------------~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 76 QSKVLIKEGGVQLLLTIVDTPGFGDAVDN--SNCWQPVIDYIDS------------KFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp EEECC------CEEEEEEECC-------------CHHHHHHHHH------------HHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred eEEEEEecCCcccceeeeechhhhhhccc--hhhHHHHHHHHHH------------HHHHHHHHHHHHHHHhccCCCeeE
Confidence 47888998888888899999876543211 1111111111111 355677889999999999999
Q ss_pred eEEEcCCC-CCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 86 IIVLDEPT-SGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 86 illlDEPt-~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
++++|||| .|||+... ++++.+.. +.++|++.|-.+.
T Consensus 142 lL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK~Dl 179 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAKADT 179 (418)
T ss_dssp EEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEESTTS
T ss_pred EEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEcccC
Confidence 99999999 69999873 44555542 6777777776653
No 117
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.36 E-value=1.2e-06 Score=59.65 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=40.5
Q ss_pred HhcCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 80 LLHSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 80 l~~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+.+|++|+||||++ ++|+..+..+.+++.+..+ .|+++|++||...
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 355999999999985 9999999999999988764 5789999999863
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.27 E-value=4.4e-09 Score=75.50 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=60.7
Q ss_pred EEEeccCCCCCCCCHHHHHHHHHH--------hcCCChhHHHHHHHHHHHH--cC------------CCC-CCCCCCCCC
Q psy17960 11 GFMPQEIALFEEFTISETFAFFSK--------LYNIPRSSVEAVIKDLQLV--LD------------LPP-GNQLCSTLS 67 (137)
Q Consensus 11 ~~~~q~~~l~~~ltv~e~l~~~~~--------~~~~~~~~~~~~~~~~~~~--~~------------l~~-~~~~~~~LS 67 (137)
++++|++.+++..++.+++..... +.+.+... ...+.+... .+ +.. .++++.+||
T Consensus 77 ~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lS 154 (246)
T 2bbw_A 77 KQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPS 154 (246)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCC
Confidence 445677777887888998876432 11222221 111222211 11 111 256778899
Q ss_pred hHHHHHHHHHHHH-hcCCCeEEEc----CCCCCCCHHHHHHHHHHHHHHh
Q psy17960 68 GGQARRVSIAVTL-LHSPDIIVLD----EPTSGVDPLLAHYFWKYLNRLA 112 (137)
Q Consensus 68 ~G~kqrv~ia~al-~~~p~illlD----EPt~gLD~~~~~~i~~~l~~~~ 112 (137)
| |+ +|+ +.+|++++|| |||+|+|+...+.+.+.++++.
T Consensus 155 g----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 155 G----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp T----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred C----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 8 55 677 9999999999 9999999999988888887764
No 119
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.26 E-value=1.8e-08 Score=74.53 Aligned_cols=89 Identities=12% Similarity=0.162 Sum_probs=54.7
Q ss_pred cEEEEeccCCCCCCCCHHHHHHHHHH----h--cCCChh-HHHHHHHHHHHHcCCC------C---CCCCCCCCChHHHH
Q psy17960 9 MLGFMPQEIALFEEFTISETFAFFSK----L--YNIPRS-SVEAVIKDLQLVLDLP------P---GNQLCSTLSGGQAR 72 (137)
Q Consensus 9 ~i~~~~q~~~l~~~ltv~e~l~~~~~----~--~~~~~~-~~~~~~~~~~~~~~l~------~---~~~~~~~LS~G~kq 72 (137)
.+.+++|+..+++. +.++|+.+... . .+.+.. +.. .+...+..+... . ...+...+||||+|
T Consensus 64 ~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d~~-~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~ 141 (290)
T 1odf_A 64 SIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHDMK-LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141 (290)
T ss_dssp CEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBCHH-HHHHHHHHHTC------CCEEEECCEETTHHHHTCE
T ss_pred eEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhHHH-HHHHHHHHhhccCccccCcceeeccCccccCCcccc
Confidence 34555999988765 78888876421 1 111211 122 222222222111 1 13345789999999
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPL 99 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~ 99 (137)
|+.+|++...+|+|+|+|||++++|+.
T Consensus 142 R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 142 RCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp ECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccccccceEcCCCEEEEeCccccCCcc
Confidence 999874333399999999999999985
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.23 E-value=1.5e-08 Score=72.12 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=35.7
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
++..++++||| ||+.++..+.+.+. .+.||+++||+++++..
T Consensus 104 ~l~~G~illLD-----LD~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 104 VLATGVDVFLD-----IDWQGAQQIRQKMP-----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHTTTCEEEEE-----CCHHHHHHHHHHCT-----TCEEEEEECSSHHHHHH
T ss_pred HHhcCCeEEEE-----ECHHHHHHHHHHcc-----CCEEEEEECCCHHHHHH
Confidence 34457999999 99999999998864 37899999999998765
No 121
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=2.9e-06 Score=63.33 Aligned_cols=46 Identities=11% Similarity=0.237 Sum_probs=38.4
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+..+|+++++|||++ ||+.++..+.+.+.+.. .+.++|++||+++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHH
Confidence 577999999999999 99999999999998864 36899999999753
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.07 E-value=6.6e-06 Score=58.06 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCChHHHHH-HHHHHHHh--cCCCeEEEcCCCCCCCHH-------H-----HHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 65 TLSGGQARR-VSIAVTLL--HSPDIIVLDEPTSGVDPL-------L-----AHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 65 ~LS~G~kqr-v~ia~al~--~~p~illlDEPt~gLD~~-------~-----~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
..+..+... +.-+..++ .+|+++++|||++.+|+. . ...++..+.++.++.|+|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 345555432 23233333 589999999999999985 3 34566666666655689999999987654
Q ss_pred H
Q psy17960 130 R 130 (137)
Q Consensus 130 ~ 130 (137)
.
T Consensus 178 ~ 178 (243)
T 1n0w_A 178 D 178 (243)
T ss_dssp -
T ss_pred C
Confidence 3
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.03 E-value=5.4e-06 Score=55.27 Aligned_cols=45 Identities=9% Similarity=0.304 Sum_probs=36.6
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE-EEEEcCC
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT-IIITTHY 125 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t-vi~~tH~ 125 (137)
+++.+|+++++|||++ ++...++.+++++..+.++ |.+ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 4567899999999998 6666688899999988654 677 8888884
No 124
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.92 E-value=1.4e-06 Score=66.05 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=47.8
Q ss_pred CCCCChHHHHHHHHHHHHh-cCCCeEEEcC---CC------CCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 63 CSTLSGGQARRVSIAVTLL-HSPDIIVLDE---PT------SGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~-~~p~illlDE---Pt------~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+..+|+|++++..++++.. .+|++++||| |+ .++|+..+..+.+.++++.++.|.+|++++|.
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4456778788888888764 6999999999 65 58999999999999988765557899999985
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.90 E-value=1.7e-05 Score=60.41 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcccc
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~ 135 (137)
+.+|+++|..+|+++++|||+ |+.... ..++.. ..|.+|+.++|+.+....+|++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~--~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAA--ETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHH--TTTCEEEECCCCCSHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHH--hcCCEEEEEECcchHHHHHHHH
Confidence 569999999999999999999 665533 344433 2478999999997744447765
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.75 E-value=3.4e-06 Score=62.89 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=43.0
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
++|+||+||+..+++++.+|+++ ||| ..+.+.+++++ .+.+|+++||+..
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~ 190 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI 190 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC
Confidence 78999999999999999999987 999 67888888874 4789999999643
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.71 E-value=6.6e-06 Score=63.64 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=46.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc-CCH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT-HYI 126 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t-H~~ 126 (137)
+.++.+||+|++|++.++++|+..|.++++ +++|+... ...+.+.+..++.+.+++++| |.-
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCc
Confidence 566788999999999999999999999999 99999876 444444443334466666554 443
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.61 E-value=5.3e-05 Score=58.28 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=35.6
Q ss_pred cCCCeEEEcCCCCCCCHHHH------------HHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLA------------HYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~------------~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.+|+++++|||++.+|.... ..++..|+++.++.|+|||+++|..
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 57999999999999986432 5678888888777799999999984
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.55 E-value=4.5e-07 Score=62.17 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHH------HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC-HHHHHh-cccc
Q psy17960 67 SGGQARRVSIAV------TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY-IEEARQ-ADMR 135 (137)
Q Consensus 67 S~G~kqrv~ia~------al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~-~~~~~~-~d~~ 135 (137)
|+|++|++.++. +++.+|+...+|+ ++|+..... ++.+..+. +.+.++|.+||. +++++. ||+|
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i 167 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNL 167 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHH
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHH
Confidence 788888887777 8888998888884 899988888 88888775 347799999999 888887 7776
No 130
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.45 E-value=1.1e-05 Score=62.57 Aligned_cols=115 Identities=12% Similarity=0.020 Sum_probs=71.8
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcC-CChh----HHHHHHHHHHHHc-CCC----C-CCCCC-----------CC
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYN-IPRS----SVEAVIKDLQLVL-DLP----P-GNQLC-----------ST 65 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~-~~~~----~~~~~~~~~~~~~-~l~----~-~~~~~-----------~~ 65 (137)
+.++|++|++.+++.+|+.||+.++..... .... .+...++.++... +.. . .+.++ ..
T Consensus 82 ~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 82 QSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 468999999988888999999865422100 0001 1222333333322 221 1 12221 24
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHH-HhhcCCcEEEEEcCCH
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNR-LAHTDKRTIIITTHYI 126 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~-~~~~~~~tvi~~tH~~ 126 (137)
|+... +.++++|..+++++++|+|+..|.+.....+.+.+++ +. ..|..|+.+|.+-
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~d 219 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTDD 219 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC---
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCCc
Confidence 55555 7899999999999999999999999999999999987 65 4688999888753
No 131
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.44 E-value=1.5e-05 Score=60.55 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=51.5
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHh
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLL 81 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~ 81 (137)
...+++++|+..+++..+++++. +.+.+.++....+..+++.+++.. .++.+.+|| ||+||++||++++
T Consensus 260 ~~~i~~v~q~~~l~dtpgv~e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 260 AARLYHFPHGGDVIDSPGVREFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCEEEECTTSCEEEECHHHHTCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred EEEEEEECCCCEecCcccHHHhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 34689999998888888888841 234455555556666777777744 788899999 9999999998753
No 132
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.40 E-value=7.4e-05 Score=61.90 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEE-cCCHHHHHh
Q psy17960 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIIT-THYIEEARQ 131 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~-tH~~~~~~~ 131 (137)
.+.-+|.|+.+|..++.+++.+++++++|||.. +||......++..+..... ...+|+++ ||+.+.+..
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHH
Confidence 455679999999999999999999999999996 9998877666666655542 35677774 999877654
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.0002 Score=50.35 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=35.0
Q ss_pred cCCCeEEEcCCCCCC--CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 82 HSPDIIVLDEPTSGV--DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 82 ~~p~illlDEPt~gL--D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+|+++++|+|++.+ |+.....++..+.+..++.|+||++++|....
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 589999999999987 65445555555655555678999999998775
No 134
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.32 E-value=0.0011 Score=51.51 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCCCChHHHHHHHHHHHHh--cCCCeEEEcCCCCCCC--------HHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 63 CSTLSGGQARRVSIAVTLL--HSPDIIVLDEPTSGVD--------PLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~--~~p~illlDEPt~gLD--------~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
...+|.++.+ ..++.++ .+|+++++|+++...+ ......+...|+.++++.|++||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3578999876 4556665 6899999999998763 334466777788887777999999999
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.18 E-value=5.6e-05 Score=56.71 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=57.5
Q ss_pred EEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHHHHHHHHHHhcCCCeEE
Q psy17960 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88 (137)
Q Consensus 10 i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kqrv~ia~al~~~p~ill 88 (137)
+.+++|...++|.+++++|+.+.... +... .+.+..|... ......+|| .+++++..++.+++
T Consensus 185 v~~v~q~~~~~p~~~v~e~l~~~~~~-~~d~--------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llv 248 (328)
T 3e70_C 185 VKVIKHSYGADPAAVAYDAIQHAKAR-GIDV--------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFV 248 (328)
T ss_dssp CEEECCCTTCCHHHHHHHHHHHHHHH-TCSE--------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEE
T ss_pred ceEEeccccCCHHHHHHHHHHHHHhc-cchh--------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEE
Confidence 45888888888888899998765321 1000 0011122211 122223333 48899988888888
Q ss_pred EcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 89 lDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+|.++. ..+.+.++.+.+..+.|+|++||.-
T Consensus 249 LDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 249 GDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp EEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred EecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 885543 3556666666655688999999954
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.11 E-value=3.9e-05 Score=57.29 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=60.2
Q ss_pred CCcEEEEeccCCCCCCCCHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhc
Q psy17960 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIP----RSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLH 82 (137)
Q Consensus 7 ~~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~ 82 (137)
...|+|+.|...+++ ++.|++......++.. .....+.+...+..+++.....++..||+|++||+.++
T Consensus 102 ~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII----- 174 (334)
T ss_dssp TTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE-----
T ss_pred CCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce-----
Confidence 356899999877765 6778774433322211 11112222222322333224567789999999998654
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
.+||+...+.+.+++++..+..+ ++|+.+.+..
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ 207 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEM 207 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHH
Confidence 77888888899999988765444 3677766554
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.08 E-value=6.4e-06 Score=56.30 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=35.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCeE-------EEcCCCC---CCCHHHHHHHHHHHHHHhhc
Q psy17960 65 TLSGGQARRVSIAVTLLHSPDII-------VLDEPTS---GVDPLLAHYFWKYLNRLAHT 114 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~il-------llDEPt~---gLD~~~~~~i~~~l~~~~~~ 114 (137)
.|||||+||++||||++.+|++. .-|.|.. -+|....+.+.+.+.+...+
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 49999999999999999999874 2344432 23455567778887665544
No 138
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.02 E-value=0.00097 Score=52.38 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcCC----------CCCCCHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHHH
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDEP----------TSGVDPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEEA 129 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDEP----------t~gLD~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~~ 129 (137)
++++.|-.++.|....|.+|++||+ ++|.|......+.+++..+. ...+..||.+||.++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6778899999999999999999999 34667666666666665552 23467899999998654
No 139
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.98 E-value=0.0021 Score=50.60 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=44.6
Q ss_pred CCCCCChHHHHHHHHHHH--Hhc---------------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 62 LCSTLSGGQARRVSIAVT--LLH---------------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~a--l~~---------------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..+.+||||+|-.-+|.+ +++ .-.+++|||. +.+|.......+++++++ |.=+|++|=
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP 450 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAP 450 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECc
Confidence 367899999996554443 222 2247999999 999999999999999865 566777765
Q ss_pred C
Q psy17960 125 Y 125 (137)
Q Consensus 125 ~ 125 (137)
+
T Consensus 451 ~ 451 (483)
T 3euj_A 451 E 451 (483)
T ss_dssp S
T ss_pred c
Confidence 4
No 140
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.98 E-value=0.0012 Score=49.81 Aligned_cols=56 Identities=30% Similarity=0.362 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcC--CCeEEEcCCCCCC----------CH---HHHHHHHHHHHHH---hhcCCcEEEEEcCCHH
Q psy17960 72 RRVSIAVTLLHS--PDIIVLDEPTSGV----------DP---LLAHYFWKYLNRL---AHTDKRTIIITTHYIE 127 (137)
Q Consensus 72 qrv~ia~al~~~--p~illlDEPt~gL----------D~---~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~ 127 (137)
+-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ .++.|+|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 445677877755 9999999999988 32 1222344444444 2456899999999754
No 141
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.86 E-value=1.9e-05 Score=62.63 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=42.2
Q ss_pred CCChHHHHHH----------HHHHHHhcCCC-eEEEcCCCCCCCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHH
Q psy17960 65 TLSGGQARRV----------SIAVTLLHSPD-IIVLDEPTSGVDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIE 127 (137)
Q Consensus 65 ~LS~G~kqrv----------~ia~al~~~p~-illlDEPt~gLD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~ 127 (137)
.+|+||+|+. .+++++...|. ++++||+++-++.. ...+.+.+.++ .+..|.++|++||++.
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 5677876642 34556677888 89999999888733 33444544444 3334889999999987
No 142
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.78 E-value=0.00016 Score=49.12 Aligned_cols=54 Identities=13% Similarity=0.109 Sum_probs=41.0
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 61 ~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
.++..+|+|++|++.++|++..+|+++ +|+...+.+.+.+..+.. .+..+|.++
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~-~~~~~i~t~ 158 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA-FEHHVLPVS 158 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG-GGGGEEECT
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc-ccccEEECC
Confidence 345689999999999999999999876 688888888888776643 233444444
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.71 E-value=0.0026 Score=47.82 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=44.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcC-CcEEEEEcC
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD-KRTIIITTH 124 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~-~~tvi~~tH 124 (137)
+.||.++.+|+..|...+.++++++.|+|...+ ..+...++++.++. |..+|++-|
T Consensus 108 g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 108 GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999999999986543 35666666666555 678887754
No 144
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0041 Score=46.69 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=49.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc--CCHH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT--HYIE 127 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t--H~~~ 127 (137)
+.+...+|+|++|.+. +.+...++-++++| +|.+|+|......+++.+..... +..++++. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 4456678999988776 55555677789999 99999999998888887776542 56777777 8874
No 145
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.51 E-value=0.011 Score=43.42 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=41.9
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEcCC-CCCCCHHHHHHHHHHHHHHhhcCCcEEEEE
Q psy17960 67 SGGQARRVSIAVTLLHSPDIIVLDEP-TSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122 (137)
Q Consensus 67 S~G~kqrv~ia~al~~~p~illlDEP-t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~ 122 (137)
+..+.+|.+++.+...+++++|+||| +.++|......+......+. ...+++++
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~--~~~~~lv~ 218 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG--PDEVLLVL 218 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC--CSEEEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC--CCEEEEEE
Confidence 34456788999988899999999999 99999988888888777653 23444444
No 146
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.24 E-value=0.0023 Score=48.19 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHH---hc--CCCeEEEcCCC
Q psy17960 64 STLSGGQARRVSIAVTL---LH--SPDIIVLDEPT 93 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al---~~--~p~illlDEPt 93 (137)
..+|+|++||..+++++ .. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 66 89999999996
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.13 E-value=0.0057 Score=45.02 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh--cCCcEEEE-EcCCHHHHHh-cccc
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH--TDKRTIII-TTHYIEEARQ-ADMR 135 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~--~~~~tvi~-~tH~~~~~~~-~d~~ 135 (137)
-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+.. ..+.++++ ++|..+.+.+ ++++
T Consensus 173 l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~ 236 (296)
T 2px0_A 173 FQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRF 236 (296)
T ss_dssp HHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTT
T ss_pred HHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence 345555 45899999999 889998766655554443321 12334444 5999888877 6543
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.09 E-value=0.0032 Score=46.63 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHcCCCCCCCCCCCCChHHHHHH---HHHHHHhcCCCeEEEcCCCC
Q psy17960 48 KDLQLVLDLPPGNQLCSTLSGGQARRV---SIAVTLLHSPDIIVLDEPTS 94 (137)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~LS~G~kqrv---~ia~al~~~p~illlDEPt~ 94 (137)
..+.+..+++. +...|+|+.+++ ++++++..+|+++|+|||..
T Consensus 152 ~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 34444445432 335689999999 89999999999999999975
No 149
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.05 E-value=9.7e-05 Score=54.61 Aligned_cols=69 Identities=6% Similarity=-0.094 Sum_probs=47.0
Q ss_pred cEEEEeccCCCC-----CCCCHHHHH--HHH------HHhcC-CChhHHHHHHHHHHHHcCCCC--CCCCCCCCChHHHH
Q psy17960 9 MLGFMPQEIALF-----EEFTISETF--AFF------SKLYN-IPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQAR 72 (137)
Q Consensus 9 ~i~~~~q~~~l~-----~~ltv~e~l--~~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LS~G~kq 72 (137)
.+||++|.|.+. +.+|+ +|+ .|+ +.+.+ ....+....+..+++.+++.. .++++..|||.+++
T Consensus 216 ~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R 294 (302)
T 2yv5_A 216 KGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEE 294 (302)
T ss_dssp TTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTT
T ss_pred CCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 579999998653 67889 887 343 12222 122233446677777888853 47788999998889
Q ss_pred HHHHHH
Q psy17960 73 RVSIAV 78 (137)
Q Consensus 73 rv~ia~ 78 (137)
+++|||
T Consensus 295 ~~~~~~ 300 (302)
T 2yv5_A 295 IKELCR 300 (302)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 999886
No 150
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.60 E-value=0.00012 Score=56.17 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=43.0
Q ss_pred CC--CeEEEcCCCCCCCHHHHHHHHHHHHHH-hhcCCcEEEEEcCCHHHHHh-cccc
Q psy17960 83 SP--DIIVLDEPTSGVDPLLAHYFWKYLNRL-AHTDKRTIIITTHYIEEARQ-ADMR 135 (137)
Q Consensus 83 ~p--~illlDEPt~gLD~~~~~~i~~~l~~~-~~~~~~tvi~~tH~~~~~~~-~d~~ 135 (137)
+| ++.++|||+.++|+...++.++.+... .+ .|.|++ +|++..+.. |+++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHH
Confidence 89 999999999999999999999999887 53 466754 999999887 7765
No 151
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.0044 Score=48.95 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=57.1
Q ss_pred CcEEEEeccCCCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHH-hcCCC-
Q psy17960 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTL-LHSPD- 85 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al-~~~p~- 85 (137)
+.++|++|+..+++..++++|+.+... .+.. . .+.+..|... . -..+-.-.+|++.+++++ ...|.
T Consensus 347 ~~I~vV~Q~~~~~p~~tV~e~l~~a~~-~~~D------v--VLIDTaGrl~--~-~~~lm~EL~kiv~iar~l~~~~P~e 414 (503)
T 2yhs_A 347 NNIPVIAQHTGADSASVIFDAIQAAKA-RNID------V--LIADTAGRLQ--N-KSHLMEELKKIVRVMKKLDVEAPHE 414 (503)
T ss_dssp HTCCEECCSTTCCHHHHHHHHHHHHHH-TTCS------E--EEECCCCSCC--C-HHHHHHHHHHHHHHHHTTCTTCSSE
T ss_pred cCceEEecccCcCHHHHHHHHHHHHHh-cCCC------E--EEEeCCCccc--h-hhhHHHHHHHHHHHHHHhccCCCCe
Confidence 358999999888888899999987643 1111 0 0011111111 0 011112234788888876 34574
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
++|...+++|.|.. +.++.+++.-+.|.+++||
T Consensus 415 vLLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 415 VMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp EEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred eEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 55555588886554 3344454445789999999
No 152
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.02 E-value=0.012 Score=39.85 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
+....|++++.+|+++++| ||++|..+..++++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999998865
No 153
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.82 E-value=0.018 Score=43.41 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccccc
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMRE 136 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~~~ 136 (137)
++..++..|+.++..+|+.+++|||.. .++.+.++.+.. ...|++.++|..+....++|+.
T Consensus 237 ~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~~~~~~~~Rl~ 297 (361)
T 2gza_A 237 APVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAGSCELTFERLA 297 (361)
T ss_dssp --CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECSSHHHHHHHHH
T ss_pred cccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCCCHHHHHHHHH
Confidence 555688999999999999999999986 345666776653 3457899999977555477753
No 154
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.79 E-value=0.05 Score=42.03 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=34.9
Q ss_pred CCCeEEEcCCCCCCCH-HHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDP-LLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~-~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+|++|++||+....+. ..++.++..+..+.+ .|..+|++||+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 8999999999876654 677889999988764 57889999997
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.44 E-value=0.096 Score=37.67 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCH----------HHHHHHHHHHHHHhhc---CCcEEEEEcCCHH
Q psy17960 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP----------LLAHYFWKYLNRLAHT---DKRTIIITTHYIE 127 (137)
Q Consensus 67 S~G~kqrv~ia~al~~~p~illlDEPt~gLD~----------~~~~~i~~~l~~~~~~---~~~tvi~~tH~~~ 127 (137)
+++++.+..+..+...+|.++++||+.+.++. .....++..+...... .+..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888889998899999999999776543 3333455555443211 2456788888764
No 156
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.39 E-value=7.8e-06 Score=64.78 Aligned_cols=57 Identities=16% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEE--EcCCHHHHHh-cc
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII--TTHYIEEARQ-AD 133 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~--~tH~~~~~~~-~d 133 (137)
..+|+||+||.+++. + | ++|||+.....+++.+.++.+ .+.|+++ +||+++++.. |+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcC
Confidence 457999998876641 1 7 999999888877777777653 4778875 9999999876 54
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.37 E-value=0.063 Score=39.56 Aligned_cols=55 Identities=13% Similarity=0.348 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE--EEEEcCC
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT--IIITTHY 125 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t--vi~~tH~ 125 (137)
||.++++|+..|...+.++++++.|+|... ...+...++++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999989999999998644 334566666665555666 7777553
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.55 E-value=0.19 Score=37.15 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=37.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh--cCCcEEEEEcCCHHHHHh
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH--TDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~--~~~~tvi~~tH~~~~~~~ 131 (137)
.+|.++++||+... |......+...+.+... ..+.++|++||+.+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 45889999999876 88888888888766543 137889999999865443
No 159
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.46 E-value=0.032 Score=41.66 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhc------CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh
Q psy17960 63 CSTLSGGQARRVSIAVTLLH------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH 113 (137)
Q Consensus 63 ~~~LS~G~kqrv~ia~al~~------~p~illlDEPt~gLD~~~~~~i~~~l~~~~~ 113 (137)
..++|+|++|++..+++++. .|+++. +|++|..+...+++.|.+..+
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999887 688876 999999999999999988653
No 160
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.03 E-value=0.00023 Score=55.05 Aligned_cols=70 Identities=17% Similarity=0.076 Sum_probs=42.3
Q ss_pred ccCCC--CCC----CCHHHHHHHHHHhc----CCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCC
Q psy17960 15 QEIAL--FEE----FTISETFAFFSKLY----NIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSP 84 (137)
Q Consensus 15 q~~~l--~~~----ltv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p 84 (137)
|+|.+ +.. .|+.+++.+...-+ ..........++.+ ..+++... ..+.+|||||+|| ||++++.+|
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL-~~lgl~~~-~~~~~LSgg~~QR--LaraL~~~p 310 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRL-RDMGIEPF-LISSSLLGVLAQR--LVRTLCPDC 310 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHH-HHHTCCHH-HHHHHEEEEEEEE--EEEEECTTT
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHH-HHcCCcHH-HHHHHHHHHHHHH--hhhhhcCCC
Confidence 77764 333 57888887643211 01111122333333 33455322 3667899999999 999999999
Q ss_pred CeEE
Q psy17960 85 DIIV 88 (137)
Q Consensus 85 ~ill 88 (137)
++..
T Consensus 311 ~~~~ 314 (418)
T 1p9r_A 311 KEPY 314 (418)
T ss_dssp CEEE
T ss_pred CccC
Confidence 9875
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.89 E-value=0.059 Score=36.40 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~ 111 (137)
...|++++.+|++.++| ||++|..+..++++.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999998887654
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.74 E-value=0.0035 Score=43.15 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHH-HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-------CCcEEEEEcCCHHHHH
Q psy17960 76 IAV-TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-------DKRTIIITTHYIEEAR 130 (137)
Q Consensus 76 ia~-al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-------~~~tvi~~tH~~~~~~ 130 (137)
.++ +++.+|++++|||+++++|....+.+.+.|....++ ...-.+++-++++.+.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a~ 178 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAY 178 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCceEEEECCCHHHHH
Confidence 455 678888899999999999998888888877665322 2234566667776653
No 163
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.20 E-value=0.093 Score=36.39 Aligned_cols=63 Identities=27% Similarity=0.170 Sum_probs=41.8
Q ss_pred HHHHHHHHHHh--cCCCeEEEcCCCC--CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH--HHhcccc
Q psy17960 71 ARRVSIAVTLL--HSPDIIVLDEPTS--GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE--ARQADMR 135 (137)
Q Consensus 71 kqrv~ia~al~--~~p~illlDEPt~--gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~--~~~~d~~ 135 (137)
+..+..++..+ .+.+++||||.+. .++.....++++++.+. -.+..||+++.+... ++.||-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~V 174 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTV 174 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcce
Confidence 44555566666 5689999999976 34444555688888653 246789999988733 3336644
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.00 E-value=0.13 Score=37.95 Aligned_cols=57 Identities=26% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHHHh---cCCCeEEEcCCCCCCCH--------HH----HHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 72 RRVSIAVTLL---HSPDIIVLDEPTSGVDP--------LL----AHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 72 qrv~ia~al~---~~p~illlDEPt~gLD~--------~~----~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+.+..++.++ .+|+++++|+.++-... .. ..++...|+.+.++.+++||++.|-...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~ 260 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR 260 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence 5566677776 67999999999876532 11 2445555666666678999999987544
No 165
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.29 E-value=5.4e-05 Score=54.93 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCe--EEEcCCCCCCCHHHH---------HHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 65 TLSGGQARRVSIAVTLLHSPDI--IVLDEPTSGVDPLLA---------HYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~i--lllDEPt~gLD~~~~---------~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+|+| ||+++++++..+|++ +|+||.|+.+|...+ ....+.+..+. .|.|.+.+.|.
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~g~t~~~~a~r 239 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK--QGLITLEDAME 239 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH--TTSSCHHHHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH--cCCCCHHHHHH
Confidence 46888 899999999999999 999999999987632 23445555554 36666555443
No 166
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.20 E-value=0.24 Score=36.86 Aligned_cols=58 Identities=5% Similarity=0.078 Sum_probs=37.6
Q ss_pred HHHHHHHHHh----cCCCeEEEcCCCCCCCHH------------HHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 72 RRVSIAVTLL----HSPDIIVLDEPTSGVDPL------------LAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 72 qrv~ia~al~----~~p~illlDEPt~gLD~~------------~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+..++.++ .+++++++|+.++-.... ....+...|+.+.++.+.+||+++|.....
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 277 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 277 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecC
Confidence 4444455555 679999999998866432 134455566667666789999999976543
No 167
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.74 E-value=0.17 Score=40.72 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCCCChH-HHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 63 CSTLSGG-QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 63 ~~~LS~G-~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
...|+.+ +++...+.+.++.+|..++++.+++++|... .....+++++....+.||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~-~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT-TEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT-CHHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc-HHHHHHHHHHhhcCCceEEEecc
Confidence 5566544 4578889999999999999999999999884 45777888876554578888888
No 168
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.70 E-value=0.00062 Score=49.53 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=37.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCC------------CCCHHHHHHHHHHH
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS------------GVDPLLAHYFWKYL 108 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~------------gLD~~~~~~i~~~l 108 (137)
++.+.+|||||+||+.+++|+..+|++| |||+. --|...+..+++.+
T Consensus 132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 132 NQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3455689999999999999999999975 99864 23777777777655
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.84 E-value=0.00014 Score=55.30 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHHhcCCCe--EEEcCCCCCCCHHH---H-----H-HHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 66 LSGGQARRVSIAVTLLHSPDI--IVLDEPTSGVDPLL---A-----H-YFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~i--lllDEPt~gLD~~~---~-----~-~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+|+| ||+++++++..+|++ +|+||.|+.||... . + ...+.+..+. .|.|.+.+.|..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~g~t~~~~a~r~ 351 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK--QGLITLEDAMEA 351 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT--TSSSCTTTTTSS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH--CCCCCHHHHHHH
Confidence 4888 889999999999999 99999999998641 1 1 2344444443 477777776664
No 170
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=89.20 E-value=0.054 Score=38.62 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCC
Q psy17960 37 NIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPD 85 (137)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~ 85 (137)
+++...+...++.+.+.+|.+.-+|..+.||||..++...+++|+..|+
T Consensus 45 ~~s~~~~s~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 45 GISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 4555566677888888888866788899999999999999999998876
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=88.76 E-value=0.079 Score=42.52 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=40.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
+.+|+|++|++..++....++.+|++||... |++..+..+++.|.+
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 6789999999999999999999999999988 899999999999875
No 172
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.63 E-value=1.2 Score=33.51 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=33.5
Q ss_pred HHHHHHHHHh--cCCCeEEEcCCCCCCCHH-------------HHHHHHHHHHH---HhhcCCcEEEEEcCCHHH
Q psy17960 72 RRVSIAVTLL--HSPDIIVLDEPTSGVDPL-------------LAHYFWKYLNR---LAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 72 qrv~ia~al~--~~p~illlDEPt~gLD~~-------------~~~~i~~~l~~---~~~~~~~tvi~~tH~~~~ 128 (137)
+-..+++.++ .+++++++|++++-.... ..+.+.+.+++ +.++.+++||+++|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~ 202 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 202 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccc
Confidence 3445556554 679999999998766321 11233333333 345568999999987543
No 173
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.45 E-value=0.0017 Score=44.98 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHH-HHHhcCCCeEEEcCCC
Q psy17960 64 STLSGGQARRVSIA-VTLLHSPDIIVLDEPT 93 (137)
Q Consensus 64 ~~LS~G~kqrv~ia-~al~~~p~illlDEPt 93 (137)
..+|+||+|+++++ ++++.++.++++|||.
T Consensus 110 ~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 110 RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 45799999999998 8889999988899984
No 174
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.15 E-value=2.4 Score=31.89 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHh--cCCCeEEEcCCCCCCC----------------HHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 72 RRVSIAVTLL--HSPDIIVLDEPTSGVD----------------PLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 72 qrv~ia~al~--~~p~illlDEPt~gLD----------------~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+-+.+++.++ .+|+++++|+-++-.. ......++..|..+.++.+.+||++.|-
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 3445566554 5699999998665443 1222334555667776778999999887
No 175
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.89 E-value=0.59 Score=35.12 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=39.7
Q ss_pred cCCCeEEEcCCCCCCC---HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVD---PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 82 ~~p~illlDEPt~gLD---~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
..|.++++||--.-++ +.....+.+++++.++ .|..++++||.++.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhh
Confidence 3588999999987774 6777888888888865 5889999999998764
No 176
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=87.76 E-value=0.0047 Score=48.75 Aligned_cols=46 Identities=9% Similarity=-0.022 Sum_probs=34.9
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
|||..+ +++|+ ||++.+||. +..+. .++.+.-+.++.+++|+|+.+
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~---~eLt~~~~~~iP~vsa~md~~ 73 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLT---SALTRKITLKTPLISSPMDTV 73 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCC---EESSSSCEESSCEEECCCTTT
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEE---eeccCCeeEeceEEEEehhhh
Confidence 789999 99999 999999994 33332 234444467889999999876
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.83 E-value=0.28 Score=36.06 Aligned_cols=46 Identities=22% Similarity=0.132 Sum_probs=27.1
Q ss_pred CCCeEEEcCCCCCCC---HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 83 SPDIIVLDEPTSGVD---PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 83 ~p~illlDEPt~gLD---~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
.|.++++||+....+ ......+...+... ...+.++|++||+.+..
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-NKSKISFIGITNDVKFV 176 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-CC--EEEEEEESCGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhc-CCCeEEEEEEECCCChH
Confidence 388999999977553 22233333333221 23467899999988643
No 178
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.31 E-value=0.5 Score=31.78 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=26.9
Q ss_pred hcCCCeEEEcCCCC-CCCHHHHHHHH-HHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 81 LHSPDIIVLDEPTS-GVDPLLAHYFW-KYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 81 ~~~p~illlDEPt~-gLD~~~~~~i~-~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
+.++++|++||+-. .++...+..++ .++.........+|+.+.++++...
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH
Confidence 34678999999933 23433344344 4555543333445555555666654
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.71 E-value=1.4 Score=31.99 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred hcCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..+|++|++||+.. ..+...++.++..+..+.+. +..+|++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 35699999999865 23447788889998887643 555555554
No 180
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.71 E-value=0.72 Score=33.56 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHh--cCCCeEEEcCCCCCCCHHH-HHHHHHHHHHHhhcCCc--EEEEEcCCHHHHHh
Q psy17960 66 LSGGQARRVSIAVTLL--HSPDIIVLDEPTSGVDPLL-AHYFWKYLNRLAHTDKR--TIIITTHYIEEARQ 131 (137)
Q Consensus 66 LS~G~kqrv~ia~al~--~~p~illlDEPt~gLD~~~-~~~i~~~l~~~~~~~~~--tvi~~tH~~~~~~~ 131 (137)
+|.|++ .++..+. ..|.++++ +.+|... +..+.+.+.++.+..|. .+.+++|+.+.+..
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHH
Confidence 888886 4455555 67889988 8899876 67788888888654453 66777777655443
No 181
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=84.69 E-value=4.1 Score=31.20 Aligned_cols=59 Identities=19% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHHh--cCCCeEEEcCCCCCCCH----------HHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 65 TLSGGQARRVSIAVTLL--HSPDIIVLDEPTSGVDP----------LLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~--~~p~illlDEPt~gLD~----------~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+|..+- .+.++.+. .+|+++++|..+.-... .....+...|+.+.++.+++||+++|-
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 4555543 23344443 57999999988654322 123456677777777778999999984
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.77 E-value=1.3 Score=32.17 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=32.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+++++++|| ...+++.....+.+.+.+.. .+..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 456999999 78899999999999988754 2455677776654
No 183
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.50 E-value=0.95 Score=30.50 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+|.++++||.-. ++......+...+.+. ..+..+|++|++..
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 478999999755 7888888887777543 23577888888754
No 184
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.15 E-value=1.6 Score=30.86 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEEA 129 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~~ 129 (137)
+-.+..+....|.++++||.-. +-+......+..++..+. ...+..+|.+|+..+.+
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3445556667889999999743 236666777777777653 22356788888876443
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.94 E-value=1.2 Score=30.20 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=28.8
Q ss_pred hcCCCeEEEcCCCCCC-CHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGV-DPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gL-D~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
+.+|.++++||.-.-- +......+.+.+..........+|++++
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999964422 2333777888888776542333777766
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=82.70 E-value=0.97 Score=33.58 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
+.+++++++..+++..+.+|+++|+.-..+..|... .....+++.+......+++++|.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356788899999999999999888774334445433 44566667665433357776665
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.72 E-value=3 Score=30.08 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCCCeEEEcCCCC-------------CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTS-------------GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~-------------gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+-.+..|....|.++++||.-+ +........++..+..+....+..||.+|+..+.+
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3445566667899999999642 23334455566666544333467889999987654
No 188
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.62 E-value=8.3 Score=28.94 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=34.3
Q ss_pred HHHHHHHHHh--cCCCeEEEcCCCCCCC---H----------HHHHHHHHHHHHH---hhcCCcEEEEEcCCHH
Q psy17960 72 RRVSIAVTLL--HSPDIIVLDEPTSGVD---P----------LLAHYFWKYLNRL---AHTDKRTIIITTHYIE 127 (137)
Q Consensus 72 qrv~ia~al~--~~p~illlDEPt~gLD---~----------~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~ 127 (137)
+-+.+++.++ .+++++++|..++-.. . ...+.+.+.++++ .++.+++||++.|--.
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 3445566665 5699999999876441 0 1113344455444 4667899999988654
No 189
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.66 E-value=12 Score=28.54 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
+.||..+.+++.-|...+.+.++++.|+|.. +.. ++...++++.++.+..+|++-
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~---~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLM---EVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHH---HHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHH---HHHHHHHHHHHHcCCCEEEEc
Confidence 5699999999998888888888999998744 333 345555555544566666663
No 190
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.42 E-value=1.1 Score=31.62 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHhcCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 77 AVTLLHSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 77 a~al~~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..++..+|+++|+||+-. ..+.......++.+.... ..|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 333446899999999864 233222233344444443 34778888888
No 191
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=78.36 E-value=1.3 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.4
Q ss_pred CCCCCChHHHHHHHHH----HHH-hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh
Q psy17960 62 LCSTLSGGQARRVSIA----VTL-LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH 113 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia----~al-~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~ 113 (137)
++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...+++.|.+...
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 3556788888888877 555 434444 89999999999999999887653
No 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.50 E-value=0.029 Score=41.13 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=36.6
Q ss_pred cEEEEeccCC----------------CCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCC-C-CCCCCCCCCh
Q psy17960 9 MLGFMPQEIA----------------LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-P-GNQLCSTLSG 68 (137)
Q Consensus 9 ~i~~~~q~~~----------------l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~LS~ 68 (137)
.+||++|.|. +|+++|+ +|+.|.... . ..+....+..+++.++++ . .++++..||.
T Consensus 221 ~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~-~--~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 221 FGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCN-H--VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp TSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCC-S--SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCc-C--CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5799999874 5888888 888765211 1 122234566777778884 3 4667777774
No 193
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.79 E-value=2.5 Score=30.68 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHh---cCCCeEEEcCCCCCCC--------HHH----HHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 74 VSIAVTLL---HSPDIIVLDEPTSGVD--------PLL----AHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 74 v~ia~al~---~~p~illlDEPt~gLD--------~~~----~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+..+..++ .+++++++|..++-.. ... ..++...|+.+.++.+++||++.|-
T Consensus 192 l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~ 258 (322)
T 2i1q_A 192 AEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQV 258 (322)
T ss_dssp HHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred HHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECce
Confidence 33344444 4689999998875431 111 2445556666666778999998874
No 194
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=75.12 E-value=4.3 Score=28.35 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=26.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+|+++++||--. |+.. ..+.+..+.+ .|..||++-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~ 125 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLD 125 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCS
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEecc
Confidence 589999999964 6543 4445555554 38999999994
No 195
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=74.29 E-value=13 Score=23.02 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=39.3
Q ss_pred hcCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 81 LHSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 81 ~~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
..+|+.+++| ...+.+|..+...+.++.+++++ .|..++++.-....
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHK-RGIKVLISGANSRV 93 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEECCCHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHH
Confidence 3578999999 89999999999999999999875 57788888665543
No 196
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=73.37 E-value=8.8 Score=28.33 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCeEEEcCC-------CCCCCHHHHHHHHHHHHHHh---h--cCCcEEEEEcCCHHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEP-------TSGVDPLLAHYFWKYLNRLA---H--TDKRTIIITTHYIEE 128 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEP-------t~gLD~~~~~~i~~~l~~~~---~--~~~~tvi~~tH~~~~ 128 (137)
.+..+..+-..+|.+|++||. ..+.+........+++..+. . ..+..||.+|+..+.
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 444556666678999999998 33333333333333443332 1 124567778887643
No 197
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=72.64 E-value=3.1 Score=30.27 Aligned_cols=49 Identities=8% Similarity=0.140 Sum_probs=25.2
Q ss_pred hcCCCeEEEcCCC-CCCCHHHHHHHHH-HHHHHhhcCCcEEEEEcC-CHHHHH
Q psy17960 81 LHSPDIIVLDEPT-SGVDPLLAHYFWK-YLNRLAHTDKRTIIITTH-YIEEAR 130 (137)
Q Consensus 81 ~~~p~illlDEPt-~gLD~~~~~~i~~-~l~~~~~~~~~tvi~~tH-~~~~~~ 130 (137)
+.++++|++||.- ..++...+..++. ++...... +..+|++|+ .++...
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~-~~~~IitSN~~~~~l~ 263 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLE-ELPTFFTSNYSFADLE 263 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHH-TCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHC-CCcEEEECCCCHHHHH
Confidence 4578999999983 2344444444544 66554223 345555555 555543
No 198
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=70.61 E-value=6.3 Score=25.93 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=31.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.++.++++||. ..++......+...+.+.. .+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS--KSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC--CCCeEEEEeCChh
Confidence 46889999995 5577777778888876642 3566777777653
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=70.40 E-value=0.21 Score=36.87 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=36.4
Q ss_pred EEEEeccCCCCC----CCCHHHHHH--HH-HH-h------cC-CChhHHHHHHHHHHHHcCCCC-CCCCCCCCChHHHH
Q psy17960 10 LGFMPQEIALFE----EFTISETFA--FF-SK-L------YN-IPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQAR 72 (137)
Q Consensus 10 i~~~~q~~~l~~----~ltv~e~l~--~~-~~-~------~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LS~G~kq 72 (137)
+||++|.|.+.+ .+|+ |++. |+ .. + .+ ....+....+..+++.+++.. ..+.+..++.|++|
T Consensus 225 ~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 225 GGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp TEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred CEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 689999987655 6788 8883 22 11 1 11 111222345666777777754 34455667778776
No 200
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=70.12 E-value=0.2 Score=33.94 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH--Hh-cccc
Q psy17960 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA--RQ-ADMR 135 (137)
Q Consensus 67 S~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~--~~-~d~~ 135 (137)
+.|+.+|..++.....+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+. .. ||.+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTTTTTCGGGCSEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhhhcCcHhhCCEE
Confidence 678899999998888877644333 3455666666666555432 245788888987665 23 5554
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.55 E-value=4.5 Score=33.61 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCC----------HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVD----------PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD----------~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
-+..+..+....|.++++||+-+.+. ......++..+.......+..++.+||+.+.+
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 34455666677899999999854432 23334455555444333457889999987554
No 202
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=69.01 E-value=18 Score=22.53 Aligned_cols=46 Identities=11% Similarity=0.294 Sum_probs=38.4
Q ss_pred cCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 82 HSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 82 ~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+++.+++| ...+.+|..+...+.++.+++++. |..+.++.-....
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~-g~~l~l~~~~~~v 96 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKR-GTILLLSGVSDRL 96 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHH-TCEEEEESCCHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH
Confidence 578999999 889999999999999999998754 7788887665443
No 203
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=68.62 E-value=7.8 Score=29.88 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCCeEEEcCCC-CC--CCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPT-SG--VDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt-~g--LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+-+++.+...+++++|+|+|- .+ .|+....++..+.+... .....+++.++.
T Consensus 169 ~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-pd~vlLVlDa~~ 223 (433)
T 3kl4_A 169 KKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-PDDVILVIDASI 223 (433)
T ss_dssp HHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-CSEEEEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-CcceEEEEeCcc
Confidence 345666666799999999997 45 78888888877766553 334455666654
No 204
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=68.12 E-value=6.7 Score=23.34 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=35.0
Q ss_pred cCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 82 HSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 82 ~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
.+|+.+++| .....+|..+...+.++.+++++ .|..+.++.
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~ 83 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRR-EGAEVRIVG 83 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHH-TTCEEEEES
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHh-CCCEEEEEc
Confidence 578899999 88999999999999999999875 577777764
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=68.08 E-value=6.9 Score=30.57 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCeEEEcCCC----------CCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 74 VSIAVTLLHSPDIIVLDEPT----------SGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt----------~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
-.+..|.-..|.+|++||-- ..+.......++..+.......+..||.+|+..+.
T Consensus 288 ~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 34555666788999999961 23334555667777766544445677888887754
No 206
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=67.63 E-value=17 Score=26.85 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcC-CCCCCCHHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDE-PTSGVDPLLAHYFWKYLNRLA-HTDKRTIIITTH 124 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDE-Pt~gLD~~~~~~i~~~l~~~~-~~~~~tvi~~tH 124 (137)
|..-=-+++..+|+..|+++++=| |++ .+.+.+.+++.. +.++.+||+++-
T Consensus 170 GR~aG~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaE 222 (319)
T 1zxx_A 170 GRNCGDIAMRVGVACGADAIVIPERPYD------VEEIANRLKQAQESGKDHGLVVVAE 222 (319)
T ss_dssp CTTCCHHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCCCEEEEEET
T ss_pred CCCHHHHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 333346889999999999999955 443 246666666654 234556766664
No 207
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=67.23 E-value=15 Score=22.38 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=38.0
Q ss_pred cCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 82 HSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 82 ~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+|+.+++| ...+.+|..+...+.++.++++ + |..++++.-....
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~-~-g~~l~l~~~~~~v 89 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLP-E-GCELRVCNVEFQP 89 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCC-T-TCEEEEECCCHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHH-C-CCEEEEecCCHHH
Confidence 578999999 8899999999999999999986 5 7788887666544
No 208
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=65.90 E-value=19 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCeEEEcC-CCCCCCHHHHHHHHHHHHHHh-hcCCcEEEEEcC
Q psy17960 72 RRVSIAVTLLHSPDIIVLDE-PTSGVDPLLAHYFWKYLNRLA-HTDKRTIIITTH 124 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDE-Pt~gLD~~~~~~i~~~l~~~~-~~~~~tvi~~tH 124 (137)
=-+++..+|+..|+++++=| |++ .+.+.+.+++.. +.++.+||+++-
T Consensus 175 G~lAl~a~lA~ga~~iliPE~~~~------~~~i~~~i~~~~~~gk~~~iIvvaE 223 (320)
T 1pfk_A 175 GDLTLAAAIAGGCEFVVVPEVEFS------REDLVNEIKAGIAKGKKHAIVAITE 223 (320)
T ss_dssp CHHHHHHHHHTTCSEEECTTSCCC------HHHHHHHHHHHHHTTCSCEEEEEES
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCC------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 35889999999999999955 443 245666666654 334556766654
No 209
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=65.88 E-value=24 Score=24.87 Aligned_cols=53 Identities=21% Similarity=0.111 Sum_probs=31.8
Q ss_pred HHHHhcCCCeEEEcCCCCC-------CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 77 AVTLLHSPDIIVLDEPTSG-------VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 77 a~al~~~p~illlDEPt~g-------LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
..++....+++.|-|+... ++.....++...+++++++.|.. +++-.+.+.+.
T Consensus 50 ~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~-liInd~~~lA~ 109 (243)
T 3o63_A 50 EAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGAL-FAVNDRADIAR 109 (243)
T ss_dssp HHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCE-EEEESCHHHHH
T ss_pred HHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCE-EEEeCHHHHHH
Confidence 3455666777777777644 77777666666677766555543 33334444443
No 210
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=65.02 E-value=9.9 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=27.6
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+.+++++||----.+ +.++++.+.. .|..||++.++
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecc
Confidence 6789999999977654 4444444443 58899999999
No 211
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=64.94 E-value=7.6 Score=24.57 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=27.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+|+.|+-+..=|+..+..+.+++... ++.|..|.++|.+-..
T Consensus 58 LLI~d~l~r~~d~~~~~~~~el~e~~-~~~G~~V~ivs~~~~~ 99 (124)
T 1x52_A 58 LLISDELFRHQDVATRSRYVRLVDSV-KENAGTVRIFSSLHVS 99 (124)
T ss_dssp EEEEHHHHTCSSHHHHHHHHHHHHHH-HHTTCEEEEECSSSHH
T ss_pred EEechhhhcCCChHHHHHHHHHHHHH-HHcCCEEEEECCCCcc
Confidence 55555554444788888898955544 4567777777765433
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.24 E-value=27 Score=26.05 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHH--h--cCCCeEEEcCCCCCCC-------H--------HHHHHHHHHHHH---HhhcCCcEEEEEcCC
Q psy17960 68 GGQARRVSIAVTL--L--HSPDIIVLDEPTSGVD-------P--------LLAHYFWKYLNR---LAHTDKRTIIITTHY 125 (137)
Q Consensus 68 ~G~kqrv~ia~al--~--~~p~illlDEPt~gLD-------~--------~~~~~i~~~l~~---~~~~~~~tvi~~tH~ 125 (137)
.++++.+.++..+ + .+|++++.|--++-.- + ...+.+...+++ +.++.+.++|++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 5666656777666 3 3699999998766531 0 122333344433 456679999999998
Q ss_pred HH
Q psy17960 126 IE 127 (137)
Q Consensus 126 ~~ 127 (137)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 213
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=64.20 E-value=10 Score=28.11 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.++++++|.|..|++.... +.+ + .+..++++|.+.....
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~----~~l---~--~~g~ivyvsc~p~t~a 333 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETE----KMV---Q--AYPRILYISCNPETLC 333 (369)
T ss_dssp CEEEEEECCCTTCCCHHHH----HHH---T--TSSEEEEEESCHHHHH
T ss_pred CCCEEEECcCccccHHHHH----HHH---h--CCCEEEEEECCHHHHH
Confidence 5799999999999986433 332 2 2557889999886643
No 214
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=64.05 E-value=24 Score=24.14 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCC-----------CHHHHHHHHHHHHHHhh---cCCcEEEEEcCCHHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGV-----------DPLLAHYFWKYLNRLAH---TDKRTIIITTHYIEEA 129 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gL-----------D~~~~~~i~~~l~~~~~---~~~~tvi~~tH~~~~~ 129 (137)
+-.+..+....|.++++||.-.-. +......+..++..+.. ..+..+|.+|...+.+
T Consensus 88 ~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 88 RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158 (262)
T ss_dssp HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence 334555556679999999986532 33334445555555432 2345677778776543
No 215
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=63.92 E-value=25 Score=27.18 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHh--cCCCeEEEcCCCCC------CC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 74 VSIAVTLL--HSPDIIVLDEPTSG------VD-PLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 74 v~ia~al~--~~p~illlDEPt~g------LD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+..++.+. .+|+++++|--+.- -+ ......+...|+.+.++.+++||+++|--
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 33444443 47999999954321 12 13334567777777777799999998854
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=63.75 E-value=10 Score=29.21 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE--EEEEc
Q psy17960 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT--IIITT 123 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t--vi~~t 123 (137)
|+..+.+++.-|...+.+.++++.|+|. +++.. +...++++.++.|.. +|++-
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~~ir~l~~~~~~~~~lIVID 317 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMID 317 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHHHHHHHHHHSCSSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHHHHHHHHHHhCCCCeEEEEe
Confidence 7888888888888877788899999874 54443 444555554444666 66664
No 217
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=62.65 E-value=5.7 Score=28.94 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=30.8
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+++++++||. -.++......+.+.+.+. ..+..+|++|++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC--CSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 35689999995 457888888887777653 23567788888654
No 218
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=62.51 E-value=26 Score=21.92 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=37.8
Q ss_pred cCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 82 HSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 82 ~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
.+++.+++| ...+.+|..+...+.++.+++++ .|..+.++.-....
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~v 108 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGD-VGIYVYLAGCSAQV 108 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHT-TTCEEEEESCCHHH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH
Confidence 367899999 88999999999999999999875 57788887665544
No 219
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=61.46 E-value=22 Score=20.93 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=23.1
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCCH
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHYI 126 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~~ 126 (137)
--.+|+++++|=-..+.|- .++.+.+++ ..+. .|++++++-
T Consensus 43 ~~~~~dlii~D~~~p~~~g---~~~~~~lr~---~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 43 EELQPDLILLDIMLPNKDG---VEVCREVRK---KYDMPIIMLTAKDS 84 (120)
T ss_dssp HTTCCSEEEEETTSTTTHH---HHHHHHHHT---TCCSCEEEEEESSC
T ss_pred hhCCCCEEEEeCCCCCCCH---HHHHHHHHh---cCCCCEEEEECCCC
Confidence 3468999999977666543 233444433 2334 445555543
No 220
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.25 E-value=19 Score=24.52 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHhcCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEE-cCCHHH
Q psy17960 67 SGGQARRVSIAVTLLHSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIIT-THYIEE 128 (137)
Q Consensus 67 S~G~kqrv~ia~al~~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~-tH~~~~ 128 (137)
+.|...+.. ...+.+.+++++||.-. ++|.......+..+.....+ -.++++| |.+.+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~ 222 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSM 222 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHH
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHH
Confidence 456655543 33578999999999976 68877765444444433322 2355554 444443
No 221
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=60.20 E-value=8.6 Score=27.96 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=34.4
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-...+..+.+++++||+-..+.....+.+.+.+.+.. .+..+|+++.+
T Consensus 69 ~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~--~~~~~il~~~~ 116 (343)
T 1jr3_D 69 QAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRGNK 116 (343)
T ss_dssp HHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB--TTEEEEEEESC
T ss_pred cCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 3445677889999999977787778888888876543 35556666654
No 222
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=59.69 E-value=14 Score=26.51 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCeEEEcCCCCCCC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVD-PLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+++++++||.- .+. ......+...+.+.. .+..+|++|....
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 68899999984 444 677777888887754 2567888888765
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.26 E-value=14 Score=26.07 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred HHHHHHhcCC-CeEEEcCCCCCCCHHHHHHHHHHHHHHhhc---------CCcEEEEEcCC
Q psy17960 75 SIAVTLLHSP-DIIVLDEPTSGVDPLLAHYFWKYLNRLAHT---------DKRTIIITTHY 125 (137)
Q Consensus 75 ~ia~al~~~p-~illlDEPt~gLD~~~~~~i~~~l~~~~~~---------~~~tvi~~tH~ 125 (137)
.+..++...| .++++||. ..+++..+..+++.+.+..-. .+..+|++|+.
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 3445555455 69999998 678999999999988764211 13346777765
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=58.95 E-value=22 Score=22.22 Aligned_cols=40 Identities=3% Similarity=0.013 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
+..++++||.- .+++..+..+++.+.+.. ..+..+|.+|.
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAE-RCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHT-TTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCC-CCCEEEEEecC
Confidence 46799999964 678888888988887753 23455666665
No 225
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=57.20 E-value=20 Score=22.04 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=30.5
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+..+.-+++|--.+-|++.++..+.++...+....+..|.++.|-
T Consensus 2 i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Ght 46 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHA 46 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 445667778888888888888777777666654445567777773
No 226
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=55.72 E-value=18 Score=24.33 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=27.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+.+++++||--- +|+.. .+.++.+... |..||++.++.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDM 118 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSB
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEeccc
Confidence 579999999644 66443 4556666544 88999998854
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.60 E-value=0.06 Score=38.62 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCC------------CCCHHHHHHHHHH
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTS------------GVDPLLAHYFWKY 107 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~------------gLD~~~~~~i~~~ 107 (137)
.+|||||+|++.+++|+..+|++ +|++.. -.|...+..+++.
T Consensus 168 ~~lsgg~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 221 (278)
T 1iy2_A 168 VEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRI 221 (278)
T ss_dssp HHHTTCCTTCCEEEEEEESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred HHHhCCCCCCCEEEEEecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 35899999999999999999987 676532 2356666665543
No 228
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=55.55 E-value=13 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=30.2
Q ss_pred cCCC--eEEEcCCCCC------CCH-HHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPD--IIVLDEPTSG------VDP-LLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~--illlDEPt~g------LD~-~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+++ ++++|--+.- -+. .....+...|+.+.++.|++|++++|-
T Consensus 178 ~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 178 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 3688 9999954321 111 334556777778777779999999994
No 229
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=55.19 E-value=8.3 Score=28.02 Aligned_cols=44 Identities=16% Similarity=0.006 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCCCCHH-HHHHHHHHHHHHhh---cCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVDPL-LAHYFWKYLNRLAH---TDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~-~~~~i~~~l~~~~~---~~~~tvi~~tH~~ 126 (137)
+|.++++||.-.-.+.. ....+..++..... ..+..+|++|++.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 46699999986533221 34445555544321 2356899999887
No 230
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.10 E-value=28 Score=26.60 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCC----------CCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSG----------VDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~g----------LD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~~~ 129 (137)
|-.+..|-...|.++++||--+- -|......+.++|.++ ....+..||.+|..++.+
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 44566666788999999997542 2344455555666554 233456789999877543
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.42 E-value=39 Score=25.12 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHHHHH-HHHHHhcCCCeEEEcCCCCCCCH-----------HHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 69 GQARRVS-IAVTLLHSPDIIVLDEPTSGVDP-----------LLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 69 G~kqrv~-ia~al~~~p~illlDEPt~gLD~-----------~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+..+.+. +...+...+ ++++||-.+=-.. ....+++..|..+.++.|++++++++-
T Consensus 168 ~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 168 DFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp CHHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CHHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 3444443 444444444 9999997653221 112233333433444558899998873
No 232
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.83 E-value=49 Score=25.45 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHHH
Q psy17960 71 ARRVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEEA 129 (137)
Q Consensus 71 kqrv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~~ 129 (137)
.-|-.+..|-...|.|+++||--+ +-|......+..+|..+- ...+..||.+|+.++.+
T Consensus 262 ~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 345667777788999999999853 224444445555665552 22356789999987654
No 233
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=53.50 E-value=17 Score=25.63 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+++++++||. ..++......+...+.+.. .+..+|+++.+..
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~--~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFS--SNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcC--CCCeEEEEeCCcc
Confidence 46889999996 4567788888888887642 3566777776653
No 234
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=51.42 E-value=8.3 Score=25.71 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=26.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+++++++||--. +++. +.+.++.+.+. |..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccc
Confidence 678999999754 4433 45566666544 788888888554
No 235
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=51.36 E-value=35 Score=20.03 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=23.6
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
-..|+++|+|--..+.|- ..+.+.+++.....+..||+.|-
T Consensus 45 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HSCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEEC
Confidence 367999999987777664 23444444431122444555443
No 236
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=51.16 E-value=28 Score=28.18 Aligned_cols=45 Identities=7% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 79 TLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
.-..++-++++| |+.|+++.... ++.. +. ..+..++++.|.++..
T Consensus 95 l~~ad~~ilVvD-~~~g~~~qt~~-~~~~---~~-~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVS-AEAGVQVGTER-AWTV---AE-RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEE-TTTCSCHHHHH-HHHH---HH-HTTCCEEEEEECGGGC
T ss_pred HhhcCcEEEEEc-CCcccchhHHH-HHHH---HH-HccCCEEEEecCCchh
Confidence 345678899999 99999987663 3333 32 2467888999998864
No 237
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=50.62 E-value=1.5 Score=30.26 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=24.9
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHh----hcCCcEEEEEcCCHHHHHh
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA----HTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~----~~~~~tvi~~tH~~~~~~~ 131 (137)
++..|+..+++|++.+.|..+.+.+.+.+.... +.....+++++|+++.+..
T Consensus 145 ~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~ 200 (231)
T 3lnc_A 145 FIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETAD 200 (231)
T ss_dssp EEECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHH
T ss_pred EEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHH
Confidence 355677778889999988777777666654432 1224578888999887654
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.53 E-value=39 Score=25.92 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCeEEEcCCC----------CCCCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPT----------SGVDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIEE 128 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt----------~gLD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~~ 128 (137)
|-.+..|-...|.++++||-- ++-|......+.++|..+ ....+..||.+|+.++.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 445566667789999999972 233444444445555443 33446678999987654
No 239
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=50.42 E-value=2.7 Score=27.12 Aligned_cols=46 Identities=17% Similarity=0.004 Sum_probs=25.3
Q ss_pred cCCCeEEEcCCCCCC----CHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGV----DPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gL----D~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+|.++++||--.-. +......+.+.+..+.+..+..+|.+++..+
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 357899999952211 0111233445555544444567777777554
No 240
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.92 E-value=0.06 Score=37.97 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCC------------CCCHHHHHHHHHH
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTS------------GVDPLLAHYFWKY 107 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~------------gLD~~~~~~i~~~ 107 (137)
..|||||+|++.+++|+..+|++ +|++.. -.|...+..+++.
T Consensus 144 ~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 197 (254)
T 1ixz_A 144 VEMDGFEKDTAIVVMAATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRI 197 (254)
T ss_dssp HHHHTCCTTCCEEEEEEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred HHHhCCCCCCCEEEEEccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHH
Confidence 35789999999999999999987 677643 2366666666553
No 241
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.61 E-value=35 Score=26.26 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHHHH
Q psy17960 71 ARRVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 71 kqrv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~~~ 129 (137)
.-|-.+..|-...|.|+++||--+ +-+......+..+|..+ ....+..||.+|+.++.+
T Consensus 262 ~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 262 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp HHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred HHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 345566677778899999999521 22334444455555554 223356788899887654
No 242
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=49.23 E-value=29 Score=21.30 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=35.7
Q ss_pred CCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+++.+++| ...+.+|..+...+.++.+++++ .|..++++.-..
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~ 90 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLR-RGIVFAMARVKQ 90 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHT-TTEEEEEECCSS
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 57889999 88999999999999999999874 577777776543
No 243
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=48.51 E-value=55 Score=23.44 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCC----------CCHHHHHHHHHHHHHHh-hcCCcEEEEEcCCHHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSG----------VDPLLAHYFWKYLNRLA-HTDKRTIIITTHYIEE 128 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~g----------LD~~~~~~i~~~l~~~~-~~~~~tvi~~tH~~~~ 128 (137)
+-.+..|-..+|.++++||--+- ........++..+..+. ...+..||.+|+.++.
T Consensus 100 ~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 100 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 33455566678999999997432 12233455555555443 2234566778887544
No 244
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=48.50 E-value=48 Score=25.22 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
..+++++|.|.+|++... .+.+..++ .+ .++++|.+.....+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~----~~~l~~l~--p~-givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRL----VKRLNREK--PG-VIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHH----HHHHHHHC--CS-EEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHH----HHHHHhcC--CC-cEEEEECChHHHHh
Confidence 579999999999998643 44444443 23 58888888876543
No 245
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.34 E-value=15 Score=25.88 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+++++++||. -.++......+...+.+.. .+..+|++|.+..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~--~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYS--NSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccC--CCceEEEEeCChh
Confidence 4889999995 4466677777777776642 3567788887754
No 246
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=47.09 E-value=50 Score=20.64 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=23.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-..|+++|+|--..+.|- ..+.+.+++.. .-..|+++++.
T Consensus 69 ~~~~dlvilD~~l~~~~g---~~l~~~lr~~~--~~~ii~~s~~~ 108 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNG---IEALKLIMKKA--PTRVIMVSSLT 108 (164)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHHS--CCEEEEEESSC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CceEEEEecCC
Confidence 347999999977777664 23444444432 22344555543
No 247
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=46.99 E-value=13 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=30.6
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+.+++++||.- .|...+...+++.+.+.. .+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~--~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPP--AETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCC--TTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCC--CCeEEEEEeCChH
Confidence 356899999974 567777777777765432 3567788888874
No 248
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=46.95 E-value=40 Score=19.39 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++++|--..+.|-. .+.+.+++. ..-..++++++.
T Consensus 44 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~~~ 82 (120)
T 2a9o_A 44 EQPDIIILDLMLPEIDGL---EVAKTIRKT--SSVPILMLSAKD 82 (120)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCCEEEEESCC
T ss_pred CCCCEEEEeccCCCCCHH---HHHHHHHhC--CCCCEEEEecCC
Confidence 589999999877666642 344445442 222345555554
No 249
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=46.64 E-value=36 Score=23.60 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCeEEEcCCCC-----CCCHHHHHHHHHHHHHHhh----c-CCcEEEEEcCCHHHHHh
Q psy17960 75 SIAVTLLHSPDIIVLDEPTS-----GVDPLLAHYFWKYLNRLAH----T-DKRTIIITTHYIEEARQ 131 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~-----gLD~~~~~~i~~~l~~~~~----~-~~~tvi~~tH~~~~~~~ 131 (137)
.+..+...++.++++||.-. ..++.....+.+.|.++.. . .+..||.+|+..+.+..
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcch
Confidence 34445556799999999421 1122223445555544432 1 12346778888766543
No 250
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=46.40 E-value=50 Score=24.18 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCC----------HHHHHHHHHHHHHHhh-cCCcEEEEEcCCHH
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVD----------PLLAHYFWKYLNRLAH-TDKRTIIITTHYIE 127 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD----------~~~~~~i~~~l~~~~~-~~~~tvi~~tH~~~ 127 (137)
+-.+..|-..+|.+|++||--+-.. ......++..+..+.. ..+..||.+|+..+
T Consensus 133 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 133 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 3344555567899999999753221 1223444444444322 23566777888764
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=46.20 E-value=62 Score=29.56 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=33.0
Q ss_pred HHHHHHHHh--cCCCeEEEcCCCCCCC-H------------HHHHHHHHHHHH---HhhcCCcEEEEEcCC
Q psy17960 73 RVSIAVTLL--HSPDIIVLDEPTSGVD-P------------LLAHYFWKYLNR---LAHTDKRTIIITTHY 125 (137)
Q Consensus 73 rv~ia~al~--~~p~illlDEPt~gLD-~------------~~~~~i~~~l~~---~~~~~~~tvi~~tH~ 125 (137)
-...++.++ .+|+++++|+..+-.. . ...+++.+.+++ +.++.|++||+++|-
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql 868 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 334444333 5899999999887552 1 122345444444 345668999999883
No 252
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=46.03 E-value=50 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=18.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
-..|+++|+|--..+.|- ..+.+.+++
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~ 75 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDG---YALCRWLKG 75 (154)
T ss_dssp TCCCSEEEEESCCSSSCH---HHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHh
Confidence 467999999987777764 234444444
No 253
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=45.88 E-value=44 Score=19.65 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=23.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
-.+|+++|+|--..+.|.. .+.+.+++........|++++.
T Consensus 48 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDGL---DVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HTCCSEEEEESCBTTBCHH---HHHHHHHTTTCSSCCEEEEECC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHhcCccCCCeEEEEeC
Confidence 4689999999887776642 3344443322112344555554
No 254
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=45.73 E-value=37 Score=20.43 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=13.7
Q ss_pred hcCCCeEEEcCCCCCCCH
Q psy17960 81 LHSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~ 98 (137)
-..|+++++|--..+.|-
T Consensus 46 ~~~~dlvllD~~l~~~~g 63 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDG 63 (136)
T ss_dssp HCCCSEEEEESEETTEEH
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 368999999977666653
No 255
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=45.71 E-value=13 Score=26.94 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
+.+++|+||+- .|...+.+.+++.|.+.. .+..+|++|++.+
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~--~~t~fIl~t~~~~ 123 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPP--EYAVIVLNTRRWH 123 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCC--TTEEEEEEESCGG
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCC--CCeEEEEEECChH
Confidence 35799999984 567778888888886642 3567788888764
No 256
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=45.52 E-value=75 Score=22.19 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=28.7
Q ss_pred CCCeEEEcCCCC--------CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTS--------GVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~--------gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
++.++++||.-. ..+......+++.+.+.. .+..+|++++.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR--DDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT--TTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC--CCEEEEEeCCh
Confidence 678999999752 336777777777776532 35677777764
No 257
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=45.47 E-value=37 Score=22.70 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-..+|.| +|.++...+.+.+.++++. ......|+.||-
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 72 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVS-PLPINEVINTNY 72 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHC-CCCEEEEECSSS
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhc-CCCcEEEEECCC
Confidence 4577888 4566777777888887764 235666777773
No 258
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=45.43 E-value=45 Score=19.58 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=14.7
Q ss_pred HhcCCCeEEEcCCCCCCCH
Q psy17960 80 LLHSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~ 98 (137)
--..|+++|+|=-..+.|-
T Consensus 43 ~~~~~dlvllD~~~p~~~g 61 (122)
T 3gl9_A 43 SEFTPDLIVLXIMMPVMDG 61 (122)
T ss_dssp TTBCCSEEEECSCCSSSCH
T ss_pred HhcCCCEEEEeccCCCCcH
Confidence 3468999999977777764
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=45.21 E-value=52 Score=22.50 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCeEEEcCC-------C---CCCCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHHHH
Q psy17960 74 VSIAVTLLHSPDIIVLDEP-------T---SGVDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 74 v~ia~al~~~p~illlDEP-------t---~gLD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~~~ 129 (137)
-.+..|....|.++++||- . ++-.......+..++..+ ....+..||.+|+..+.+
T Consensus 95 ~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 95 DMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp HHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 3344455566889999996 1 111112223334444443 223356788888887543
No 260
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.77 E-value=44 Score=19.32 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=21.9
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
-..|+++++|--..+.|-. .+.+.+++ ..+..+|++|
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~---~~~~~ii~~s 80 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE---RSTVGIILVT 80 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT---TCCCEEEEEE
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh---cCCCCEEEEE
Confidence 3579999999877776642 34444443 2234454444
No 261
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=44.34 E-value=13 Score=28.12 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=32.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
|-++++||-.+-... ..+.+.+...+ +.|..+++++|++..+..
T Consensus 280 ~~~~~lDE~~~l~~~---~~l~~~~~~~R-~~g~~~~~~~Qs~~ql~~ 323 (437)
T 1e9r_A 280 RLWLFIDELASLEKL---ASLADALTKGR-KAGLRVVAGLQSTSQLDD 323 (437)
T ss_dssp CEEEEESCGGGSCBC---SSHHHHHHHCT-TTTEEEEEEESCHHHHHH
T ss_pred cEEEEEEcccccccc---hhHHHHHHHHh-ccCCEEEEEecCHHHHHH
Confidence 458999998765431 14556676665 468999999999988763
No 262
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=44.22 E-value=48 Score=19.54 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=23.6
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
-..|+++|+|--..+.|. ..+.+.+++.....+. .|+++++.
T Consensus 45 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp HSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeCCC
Confidence 468999999987777664 2344444442111233 44555543
No 263
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=44.19 E-value=52 Score=20.02 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=36.8
Q ss_pred HhcCCCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 80 LLHSPDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 80 l~~~p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+..+++.+++| +..+.+|..+...+..+.+++++. |..+.++.=..
T Consensus 48 ~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~-g~~l~l~~~~~ 94 (125)
T 2ka5_A 48 LNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSS-GGFFALVSPNE 94 (125)
T ss_dssp TTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHH-TCEEEEECCCH
T ss_pred hhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 34567889999 889999999999999999998754 66777765443
No 264
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=44.12 E-value=67 Score=23.00 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=36.9
Q ss_pred CCeEEEcCCCC--------------CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 84 PDIIVLDEPTS--------------GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 84 p~illlDEPt~--------------gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
-+++.+|.|-. +-+.....++.+.++++.+ .|.-+++|-+|-+++..
T Consensus 188 ~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~-~g~~~~lS~~d~~~i~~ 248 (284)
T 2dpm_A 188 GDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSD-TGAYVMLSNSSSALVEE 248 (284)
T ss_dssp TCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHT-TTCEEEEEEESCHHHHH
T ss_pred CCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCCHHHHH
Confidence 46899999842 3567788899999999864 47789999999877755
No 265
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.03 E-value=36 Score=26.31 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHH---hhcCCcEEEEEcCCHHHHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRL---AHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~---~~~~~~tvi~~tH~~~~~~ 130 (137)
-|-.+..|-...|.|+++||--+ +-+......+..+|..+ ....+..||.+|+.++.+-
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 35666777778899999998643 22344455555565554 2234567899999877643
No 266
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=43.87 E-value=48 Score=23.55 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=25.4
Q ss_pred hcCCCeEEEcCCCCCCC-----H-------HHHHHHHHHHH-----------HHhhcCCcEEEEEcCCHH
Q psy17960 81 LHSPDIIVLDEPTSGVD-----P-------LLAHYFWKYLN-----------RLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD-----~-------~~~~~i~~~l~-----------~~~~~~~~tvi~~tH~~~ 127 (137)
...|.++++||--+... . .....+++.+. ......+..||++|.+.+
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 45789999999843221 1 12244555543 111223567888888764
No 267
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=43.83 E-value=50 Score=19.69 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=26.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
-..|+++|+|--..+.|- ..+.+.+++.....+..||+.|-..+
T Consensus 48 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 468999999988777764 23444444421123456666665543
No 268
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=43.48 E-value=28 Score=25.14 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCeEEEcCCCCCCC-----HH---------------HHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVD-----PL---------------LAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD-----~~---------------~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.-+++++|-|++|+. +. .+..+++.+.++-+. |..++++|+.+
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp-GG~lv~stcs~ 249 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP-GGILVYSTCSL 249 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence 458999999998864 11 123455555454433 55788887754
No 269
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=43.03 E-value=35 Score=26.81 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhcC-CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 68 GGQARRVSIAVTLLHS-PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~-p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
|..-=-+++..+|+.. |+++++=|---.+| .+.+.+++..+..+.+||+++--
T Consensus 273 GR~aG~LAl~agLA~g~ad~ilIPE~p~~l~-----~i~~~i~~r~~~k~~~IIvVaEG 326 (487)
T 2hig_A 273 GRDSGFIAAQAAVASAQANICLVPENPISEQ-----EVMSLLERRFCHSRSCVIIVAEG 326 (487)
T ss_dssp CSSCCHHHHHHHHHHTCCSEEECTTSCCCHH-----HHHHHHHHHTTSCSEEEEEEETT
T ss_pred CCCHHHHHHHHHHhhCCCCEEEeCCCCCCHH-----HHHHHHHHHHhcCCcEEEEEeCC
Confidence 3333468999999998 99999865422233 56666666544456677766644
No 270
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=42.28 E-value=58 Score=22.48 Aligned_cols=55 Identities=7% Similarity=0.109 Sum_probs=35.6
Q ss_pred HHHHHHHHHhc---CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 72 RRVSIAVTLLH---SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 72 qrv~ia~al~~---~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+|+++..||.. +-++++.|+-. ++..-.+.+.++|+.+.-..+..+++++.|-+.
T Consensus 106 rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~~~ 163 (210)
T 3v2d_F 106 RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNELV 163 (210)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCChhH
Confidence 56777777743 56799999864 566667788888888743212345555555433
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=42.20 E-value=1e+02 Score=28.17 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=32.7
Q ss_pred HHHHHHh--cCCCeEEEcCCCCCCCHH-------------HHHHHHHHHHHH---hhcCCcEEEEEcCCH
Q psy17960 75 SIAVTLL--HSPDIIVLDEPTSGVDPL-------------LAHYFWKYLNRL---AHTDKRTIIITTHYI 126 (137)
Q Consensus 75 ~ia~al~--~~p~illlDEPt~gLD~~-------------~~~~i~~~l~~~---~~~~~~tvi~~tH~~ 126 (137)
.+++.++ .+|+++++|..++-.... ..+.+.+.++++ .++.+++||+++|--
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~ 520 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 4445443 579999999988765411 122344444444 355689999998853
No 272
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.00 E-value=66 Score=25.07 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCCeEEEcCCCCCC----------CHHHHHHHHHHHHHHh---hcCCcEEEEEcCCHHH
Q psy17960 71 ARRVSIAVTLLHSPDIIVLDEPTSGV----------DPLLAHYFWKYLNRLA---HTDKRTIIITTHYIEE 128 (137)
Q Consensus 71 kqrv~ia~al~~~p~illlDEPt~gL----------D~~~~~~i~~~l~~~~---~~~~~tvi~~tH~~~~ 128 (137)
.-|-.+..|-...|.|+++||--+-. +......+..+|.++- ...+..||.+|..++.
T Consensus 290 ~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 290 MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 34566777778899999999986432 3344555566666552 2235578889987654
No 273
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=41.94 E-value=50 Score=19.10 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=17.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
..|+++++|-...+.|-. .+.+.+++
T Consensus 44 ~~~dlvi~D~~l~~~~g~---~~~~~l~~ 69 (124)
T 1mb3_A 44 NKPDLILMDIQLPEISGL---EVTKWLKE 69 (124)
T ss_dssp HCCSEEEEESBCSSSBHH---HHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHc
Confidence 579999999877776642 34444544
No 274
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=41.59 E-value=63 Score=20.23 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=36.6
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+...+.-+.+|-=.+-|++.++..+.++...++...+..|.+..|-
T Consensus 25 ~~~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~Ght 70 (134)
T 2aiz_P 25 LQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNT 70 (134)
T ss_dssp HTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hhcCcceEEecCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEEE
Confidence 6777888999999999999999888888777765445578887774
No 275
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=41.47 E-value=21 Score=22.52 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 77 AVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 77 a~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+..|..+.+++++.+|..++.....+.+.+.+.... .+..+|++.+.
T Consensus 70 s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~--~~~~lvi~~~k 116 (140)
T 1jql_B 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH--DDLLLIVRGNK 116 (140)
T ss_dssp CCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC--SSCCEEEECSS
T ss_pred cCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC--CCEEEEEEeCC
Confidence 334677889999999988777666777777776543 24344444443
No 276
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=41.21 E-value=26 Score=23.60 Aligned_cols=47 Identities=19% Similarity=0.015 Sum_probs=33.5
Q ss_pred HhcCCCeEEEcCCCC----CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 80 LLHSPDIIVLDEPTS----GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 80 l~~~p~illlDEPt~----gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
--.+|+++++|--+. .-+.....++...++.+.++.|+++++++|--
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 346899999996432 12445566677777777777799999999864
No 277
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=41.03 E-value=61 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+-..+|.|- |.++...+++++.+++... ...+-|+.||-
T Consensus 83 ~~~~ilIDt---g~~~~~~~~l~~~i~~~~~-~~I~~Ii~TH~ 121 (270)
T 4eyb_A 83 GGRVLVVDT---AWTDDQTAQILNWIKQEIN-LPVALAVVTHA 121 (270)
T ss_dssp TTEEEEESC---CSSHHHHHHHHHHHHHHTC-CCEEEEEECSS
T ss_pred CCEEEEEeC---CCCHHHHHHHHHHHHHhcC-CceEEEEeCCC
Confidence 344777775 4577888888888876532 23455777773
No 278
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=40.67 E-value=69 Score=21.58 Aligned_cols=44 Identities=18% Similarity=0.107 Sum_probs=29.9
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-CCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-~~~tvi~~tH 124 (137)
..+|+++|+..+.+.++......+..+...+... ...++++.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4578999999998888886666665555443221 1247888888
No 279
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.60 E-value=58 Score=19.49 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=24.4
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
-..|+++|+|=-..+.|- .++.+.+++.....+. .|+++++.
T Consensus 46 ~~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEecCC
Confidence 468999999987777764 2344445442112233 44555554
No 280
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=40.47 E-value=53 Score=18.99 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=23.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEE-EEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI-IITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tv-i~~tH~ 125 (137)
-..|+++++|--..+.|-. .+.+.+++. .+..+ +++++.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~---~~~~ii~~s~~~ 84 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ---ANVALMFLTGRD 84 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH---CCCEEEEEESCC
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC---CCCcEEEEECCC
Confidence 3689999999877776642 344444442 24444 444443
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=40.17 E-value=43 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCC----------CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTS----------GVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~----------gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
-|-.+..|.-..|.||++||--+ ..+......++..+..+....+..||.+|..++.+
T Consensus 286 lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 34456667778899999999632 22233344455556665544567788899887654
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=39.76 E-value=81 Score=29.42 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHh--cCCCeEEEcCCCCC----------------CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 75 SIAVTLL--HSPDIIVLDEPTSG----------------VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 75 ~ia~al~--~~p~illlDEPt~g----------------LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
..++.+. .+|++++.|+-.+- |-......+...|+.++++.+++||+++|-...
T Consensus 800 ~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~ 871 (2050)
T 3cmu_A 800 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 871 (2050)
T ss_dssp HHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEEC
T ss_pred HHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccccc
Confidence 3345544 47999999983321 112233445557778887789999999997543
No 283
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=39.70 E-value=60 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=18.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
-..|+++|+|--..+.|-. .+.+.+++
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~ 71 (138)
T 3c3m_A 45 ATPPDLVLLDIMMEPMDGW---ETLERIKT 71 (138)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHH
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHc
Confidence 3579999999877776642 34444444
No 284
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=39.19 E-value=50 Score=24.39 Aligned_cols=64 Identities=16% Similarity=-0.042 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHh--c-CCCeEEEcCCCCCCCHH-------HHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 65 TLSGGQARRVSIAVTLL--H-SPDIIVLDEPTSGVDPL-------LAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~--~-~p~illlDEPt~gLD~~-------~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
.+|-.+ -.+.++.+. . ++++++.|--..--... ....+...|+.++++.+++||+++|--..++
T Consensus 137 ~~si~~--i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e 210 (338)
T 4a1f_A 137 YVRIEQ--IRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLE 210 (338)
T ss_dssp TCCHHH--HHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGG
T ss_pred CCcHHH--HHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCcccc
Confidence 345443 334444443 3 68999999654322221 2455777788888878999999999755544
No 285
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=39.16 E-value=1.1 Score=32.70 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=14.8
Q ss_pred HHhcCCCeEEEcCCCCCCC
Q psy17960 79 TLLHSPDIIVLDEPTSGVD 97 (137)
Q Consensus 79 al~~~p~illlDEPt~gLD 97 (137)
+.+.+|+++|+|.|....+
T Consensus 180 ~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 180 KTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp EEEC-CCEEEEECTTTTCC
T ss_pred eecCCCCEEEECchhhCCC
Confidence 4456789999999998876
No 286
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=38.87 E-value=53 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=17.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
..|+++++|-...+.|. ..+.+.+++
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~ 69 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLRE 69 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHh
Confidence 47999999987776664 234555544
No 287
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=38.75 E-value=1.1e+02 Score=22.02 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCC-------CCHHHHHHHHHHHHHHh----hcCCcEEEEEcCCHH
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSG-------VDPLLAHYFWKYLNRLA----HTDKRTIIITTHYIE 127 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~g-------LD~~~~~~i~~~l~~~~----~~~~~tvi~~tH~~~ 127 (137)
-+-.+..+-..+|.++++||.-+- ........+.+++..+. ...+..||.+|...+
T Consensus 94 ~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 94 VKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 334445555678999999997432 12222233333444332 123456777787654
No 288
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=38.65 E-value=41 Score=20.35 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=11.8
Q ss_pred CCCeEEEcCCCCCCC
Q psy17960 83 SPDIIVLDEPTSGVD 97 (137)
Q Consensus 83 ~p~illlDEPt~gLD 97 (137)
.|+++|+|--..+.|
T Consensus 60 ~~dlvilD~~l~~~~ 74 (145)
T 3kyj_B 60 NVDLILLDIEMPVMD 74 (145)
T ss_dssp TCCEEEECTTSCCCT
T ss_pred CCCEEEEeCCCCCCC
Confidence 799999997665554
No 289
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=38.59 E-value=10 Score=25.81 Aligned_cols=31 Identities=39% Similarity=0.507 Sum_probs=22.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~ 111 (137)
..+|+|++=||..+|=|....+.+.+.|..+
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~L 99 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSL 99 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHH
Confidence 4589999999999887665555555554444
No 290
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=38.20 E-value=32 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 102 HYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 102 ~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.++.+.+.++.+..+.+|+++||..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 45666666654334679999999864
No 291
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=38.20 E-value=15 Score=25.93 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCCCCCHHH----------------HHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVDPLL----------------AHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~----------------~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
..+++++|-|++|+.... +..+++.+.++-+. |..++++|..+
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~lv~stcs~ 214 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK-DGELVYSTCSM 214 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEEECCC
Confidence 458999999999875422 24455555554433 55778877544
No 292
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=37.93 E-value=60 Score=18.89 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=14.3
Q ss_pred hcCCCeEEEcCCCCCCCH
Q psy17960 81 LHSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~ 98 (137)
-..|+++++|--..+.|-
T Consensus 47 ~~~~dlvi~D~~l~~~~g 64 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDG 64 (128)
T ss_dssp TCCCCEEEEESCCSSSCH
T ss_pred hcCCCEEEEeCCCCCCCH
Confidence 357999999987777764
No 293
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=37.60 E-value=54 Score=18.77 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCCH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHYI 126 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~~ 126 (137)
-..|+++++|--..+.|-. .+.+.+++ .... .|+++++.-
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~---~~~~~ii~~s~~~~ 83 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDGI---EFIRDLRQ---WSAVPVIVLSARSE 83 (121)
T ss_dssp HHCCSEEEEESEETTEEHH---HHHHHHHT---TCCCCEEEEESCCS
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHh---CCCCcEEEEECCCC
Confidence 3589999999766665532 33444432 2233 455555543
No 294
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=37.25 E-value=68 Score=19.84 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC-CHHH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH-YIEE 128 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH-~~~~ 128 (137)
+..++++||. ..|++..+..+++.+.... .+..+|.+|. ++..
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~~--~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQEH--RPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSSS--CSSCEEEEESSCHHH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhcC--CCEEEEEECCcCHHH
Confidence 5679999998 4688999999998884432 2344555554 5543
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=37.23 E-value=0.33 Score=36.83 Aligned_cols=35 Identities=6% Similarity=-0.055 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCeEE-EcCCCC
Q psy17960 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIV-LDEPTS 94 (137)
Q Consensus 60 ~~~~~~LS~G~kqrv~ia~al~~~p~ill-lDEPt~ 94 (137)
+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 277 d~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 277 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred ChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 44567789999999998877888888777 888865
No 296
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=37.05 E-value=1.3e+02 Score=22.84 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEE
Q psy17960 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122 (137)
Q Consensus 64 ~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~ 122 (137)
+.|+..+.+++.-|...+...++++.|+| +++... +...++.+.++.+..+|++
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~---i~~~~~~l~~~~~~~livI 319 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVSD---IRAKCRRLKQESGLGMIVI 319 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHHH---HHHHHHHHHTTTCCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHH---HHHHHHHHHHHcCCCEEEE
Confidence 35777888888777777777788888865 455443 3455555554445566665
No 297
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=36.92 E-value=63 Score=18.83 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=14.1
Q ss_pred hcCCCeEEEcCCCCCCCH
Q psy17960 81 LHSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~ 98 (137)
-..|+++++|--..+.|-
T Consensus 49 ~~~~dlvl~D~~l~~~~g 66 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDG 66 (129)
T ss_dssp TSCCSEEEECSSSCSSCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 357999999987777664
No 298
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=36.80 E-value=23 Score=25.40 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHhcCC--------------CeEEEcCCCC-CCCHHHHHHHHHHH
Q psy17960 66 LSGGQARRVSIAVTLLHSP--------------DIIVLDEPTS-GVDPLLAHYFWKYL 108 (137)
Q Consensus 66 LS~G~kqrv~ia~al~~~p--------------~illlDEPt~-gLD~~~~~~i~~~l 108 (137)
+-+|+.++-++.+++-.+. -.+++||.++ .|+....+...++.
T Consensus 202 la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~~~~~~~~ 259 (289)
T 1ne7_A 202 LITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTVKYFKGLM 259 (289)
T ss_dssp EECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHHHHHHHTH
T ss_pred EEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchhhhhHHHH
Confidence 5678888888888887654 2899999997 67655444444443
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=36.79 E-value=89 Score=23.83 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=30.6
Q ss_pred cCCC--eEEEcCCCC----C--CC-HHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 82 HSPD--IIVLDEPTS----G--VD-PLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 82 ~~p~--illlDEPt~----g--LD-~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
.+|+ +++.|--.. + -+ ......+...|+.+.++.|++||+++|--
T Consensus 307 ~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~ 360 (444)
T 3bgw_A 307 NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 360 (444)
T ss_dssp SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4799 999995432 1 11 22344566677777777799999999943
No 300
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=36.61 E-value=68 Score=19.13 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=12.8
Q ss_pred cCCCeEEEcCCCCCCC
Q psy17960 82 HSPDIIVLDEPTSGVD 97 (137)
Q Consensus 82 ~~p~illlDEPt~gLD 97 (137)
..|+++|+|--..+.|
T Consensus 54 ~~~dlvi~d~~l~~~~ 69 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLD 69 (143)
T ss_dssp CCCSEEEECSSCSSSC
T ss_pred CCCCEEEEecCCCCCC
Confidence 5799999997766665
No 301
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=36.16 E-value=87 Score=20.24 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=23.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
..|+++|+|--..+.|-. .+.+.+++.. ....|+++++.-
T Consensus 57 ~~~dlvi~D~~~p~~~g~---~~~~~l~~~~--~~pii~lt~~~~ 96 (205)
T 1s8n_A 57 HKPDLVIMDVKMPRRDGI---DAASEIASKR--IAPIVVLTAFSQ 96 (205)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHHTT--CSCEEEEEEGGG
T ss_pred cCCCEEEEeCCCCCCChH---HHHHHHHhcC--CCCEEEEecCCC
Confidence 579999999877776642 3444444432 123455555543
No 302
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=36.10 E-value=69 Score=19.06 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=22.7
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++|+|--..| ......+.+.+++.....+. .|+++++.
T Consensus 49 ~~~dlvi~D~~l~~--~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 91 (140)
T 3lua_A 49 DSITLIIMDIAFPV--EKEGLEVLSAIRNNSRTANTPVIIATKSD 91 (140)
T ss_dssp CCCSEEEECSCSSS--HHHHHHHHHHHHHSGGGTTCCEEEEESCC
T ss_pred CCCcEEEEeCCCCC--CCcHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 67999999965540 23344555566551112233 44555544
No 303
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=35.85 E-value=40 Score=20.21 Aligned_cols=16 Identities=38% Similarity=0.783 Sum_probs=10.2
Q ss_pred cCCCeEEEcCCCCCCC
Q psy17960 82 HSPDIIVLDEPTSGVD 97 (137)
Q Consensus 82 ~~p~illlDEPt~gLD 97 (137)
..|+++|+|-...+.|
T Consensus 45 ~~~dlvi~D~~l~~~~ 60 (140)
T 3n53_A 45 HHPDLVILDMDIIGEN 60 (140)
T ss_dssp HCCSEEEEETTC----
T ss_pred CCCCEEEEeCCCCCCc
Confidence 5899999997665544
No 304
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=35.62 E-value=91 Score=22.93 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCeEEEcCCCCC----------CCHHHHHHHHHHHHHHhh--cCCcEEEEEcCCHHH
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSG----------VDPLLAHYFWKYLNRLAH--TDKRTIIITTHYIEE 128 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~g----------LD~~~~~~i~~~l~~~~~--~~~~tvi~~tH~~~~ 128 (137)
-.+..+-..+|.+|++||--.- ........++..+..... ..+..||.+|+..+.
T Consensus 198 ~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~ 264 (389)
T 3vfd_A 198 ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQE 264 (389)
T ss_dssp HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGG
T ss_pred HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchh
Confidence 3344455668899999998321 123333445555544432 123566777887544
No 305
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=35.48 E-value=45 Score=22.10 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=24.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..+|.|= |.++...+.+.+.++++. ......|+.||-
T Consensus 33 ~~iLiD~---G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~ 69 (227)
T 3iog_A 33 GVTVVGA---TWTPDTARELHKLIKRVS-RKPVLEVINTNY 69 (227)
T ss_dssp CEEEESC---CSSHHHHHHHHHHHHTTC-CSCEEEEECSSS
T ss_pred eEEEEEC---CCChHHHHHHHHHHHHhc-CCCeEEEEeCCC
Confidence 4778883 456667777877777642 234566888884
No 306
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=35.46 E-value=79 Score=22.51 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCeEEEcCCCCC--------------CCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 84 PDIIVLDEPTSG--------------VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 84 p~illlDEPt~g--------------LD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
-+++.+|.|-.. -+.....++.+.++++.+ .|.-+++|-+|-.++..
T Consensus 175 ~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~-~~~~~~lS~~d~~~i~~ 235 (278)
T 2g1p_A 175 SSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE-RHIPVLISNHDTMLTRE 235 (278)
T ss_dssp TEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHH-TTCCEEEEEECCHHHHH
T ss_pred CCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHh-cCCeEEEEcCCCHHHHH
Confidence 369999998632 355677889999999864 46789999999877754
No 307
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=35.42 E-value=6.1 Score=27.86 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh-ccc
Q psy17960 92 PTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ-ADM 134 (137)
Q Consensus 92 Pt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~-~d~ 134 (137)
|+|+.+..+..++++.+.+.....+.+..+.+|..+.++. +++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~ 187 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKH 187 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHH
Confidence 9999999999999999988765545555678888887776 444
No 308
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.04 E-value=69 Score=18.77 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++++|--..+.|- ..+.+.+++.....+. .|+++++.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecCC
Confidence 57999999987776664 2344444443210123 45555554
No 309
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=34.93 E-value=74 Score=19.06 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=17.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
..|+++|+|--..+.|- ..+.+.+++
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~ 76 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKK 76 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHT
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHc
Confidence 47999999987777664 234444443
No 310
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=34.71 E-value=66 Score=23.60 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-CCcEEEEEcC
Q psy17960 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTIIITTH 124 (137)
Q Consensus 73 rv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-~~~tvi~~tH 124 (137)
-++++.+|+..|+++++=|-- .|. +.+.+.+++..++ .+.+||+++-
T Consensus 175 ~lA~~a~la~ga~~iliPE~~--~~~---~~~~~~i~~~~~~g~~~~iivvaE 222 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPEAD--YDM---HEIIARLKRGHERGKKHSIIIVAE 222 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTTBC--CCH---HHHHHHHHHHHTTTCCCEEEEEET
T ss_pred HHHHHHHhccCCCEEEecCCC--CCH---HHHHHHHHHHHHcCCCceEEEEEC
Confidence 578889999999999996632 333 3456666655433 3456666653
No 311
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=34.54 E-value=51 Score=20.07 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=23.7
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
-..|+++|+|--..+.|- ..+.+.+++.....+. .|+++++.
T Consensus 57 ~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEecCC
Confidence 467999999987777663 2344445442111233 45555554
No 312
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=34.45 E-value=54 Score=21.88 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 93 TSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 93 t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
.+||++...+.+.+++....+ .|..+.+++
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~-~Gi~l~i~s 59 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAK-EGIYLCVAQ 59 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred ccccCHHHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 458999999999999999865 576554443
No 313
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=34.24 E-value=69 Score=19.49 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=27.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-+++|-=.+-|++.+...+.++...+....+..|.+..|-
T Consensus 15 ~v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~i~I~Ght 54 (123)
T 3td3_A 15 RVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHT 54 (123)
T ss_dssp EEECCTTCCCCCGGGHHHHHHHHHHHHHSTTCEEEEEECC
T ss_pred EEEeCCCChhcCHHHHHHHHHHHHHHHhCCCceEEEEEEe
Confidence 4567777778888888777777666654445567777774
No 314
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.18 E-value=30 Score=28.73 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh---------cCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH---------TDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~---------~~~~tvi~~tH~ 125 (137)
.+.+++|||. ..+++.....+++.+.+-.- -.+..||++|+.
T Consensus 660 ~~~vl~lDEi-~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 660 PYSVILFDEI-EKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp SSEEEEESSG-GGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred CCeEEEEecc-cccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 3579999999 45788888888777754210 013347777775
No 315
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=34.18 E-value=46 Score=22.61 Aligned_cols=26 Identities=4% Similarity=0.179 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhh----cCCcEEEEEcCCHH
Q psy17960 102 HYFWKYLNRLAH----TDKRTIIITTHYIE 127 (137)
Q Consensus 102 ~~i~~~l~~~~~----~~~~tvi~~tH~~~ 127 (137)
.++...+.++.+ ..+.+|+++||-.-
T Consensus 156 ~R~~~~l~~l~~~~~~~~~~~vlvVsHg~~ 185 (237)
T 3r7a_A 156 TRIKAEIDKISEEAAKDGGGNVLVVVHGLL 185 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCHHH
Confidence 345555555543 24679999999753
No 316
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=34.09 E-value=1.3e+02 Score=21.54 Aligned_cols=51 Identities=20% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 76 ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
+..|...+.+.++|+=. .|+......+.+..++ .|..+++-.|+.+++..+
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~----lGl~~lvevh~~eEl~~A 185 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFA----LGMDALIEVHDEAEMERA 185 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHH----TTCEEEEEECSHHHHHHH
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHH----cCCeEEEEeCCHHHHHHH
Confidence 66777889999999744 6776555555544433 489999999999998764
No 317
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.08 E-value=89 Score=21.94 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~ 111 (137)
.++.++++||.- .++......+...+.+.
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhh
Confidence 478899999974 67777888888887764
No 318
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=34.08 E-value=71 Score=18.62 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=37.7
Q ss_pred HHHHhcC-CCeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 77 AVTLLHS-PDIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 77 a~al~~~-p~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
..++... ++.+++| ...+.+|..+...+..+.+++++ .|..+.++.-...
T Consensus 35 ~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 86 (116)
T 1th8_B 35 TDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKN-VGGQMVVCAVSPA 86 (116)
T ss_dssp HHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHH-TTCCEEEESCCHH
T ss_pred HHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHH-hCCeEEEEeCCHH
Confidence 3344343 7889999 78889999999999999999875 4677777665543
No 319
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=33.86 E-value=80 Score=23.84 Aligned_cols=40 Identities=8% Similarity=0.097 Sum_probs=30.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 85 ~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
.+|+.|+-+..-|+..++.+.+++....+ .|..|.++|.+
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~-~Gg~V~ivs~~ 349 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKE-INCPVYIFSSL 349 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHH-TTCCEEEECTT
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHh-cCCEEEEECCC
Confidence 49999999988899888888877777654 56666666654
No 320
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=33.48 E-value=13 Score=23.58 Aligned_cols=46 Identities=17% Similarity=-0.013 Sum_probs=24.9
Q ss_pred cCCCeEEEcCCCCCCCH---HHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDP---LLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~---~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+|.++++||--.-.+. .....+.+.+..+.+..+..+|++|....
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 45779999997442211 11122344444444444567788877654
No 321
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=33.37 E-value=29 Score=24.04 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=27.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+.+++++||--- +|+.. .+.+..+.. .|..||+..+|.
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~-~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLAN-RGYRVIVAGLDQ 138 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHH-TTCEEEEEECSB
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhh-CCCEEEEEeccc
Confidence 579999999866 66443 255666554 388999998853
No 322
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.36 E-value=61 Score=19.45 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=13.8
Q ss_pred hcCCCeEEEcCCCCCCCH
Q psy17960 81 LHSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~ 98 (137)
-..|+++|+|--..+.|.
T Consensus 49 ~~~~dlii~D~~l~~~~g 66 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG 66 (144)
T ss_dssp TCCCSEEEECTTCGGGCH
T ss_pred cCCCCEEEEeCCCCCCCH
Confidence 367999999987766653
No 323
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=33.24 E-value=32 Score=26.60 Aligned_cols=16 Identities=44% Similarity=0.466 Sum_probs=13.7
Q ss_pred cCCCeEEEcCCCCCCC
Q psy17960 82 HSPDIIVLDEPTSGVD 97 (137)
Q Consensus 82 ~~p~illlDEPt~gLD 97 (137)
...|.+++|-|+||..
T Consensus 174 ~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEG 189 (456)
T ss_dssp TCEEEEEEECCCCCGG
T ss_pred ccCCEEEECCCCCCcc
Confidence 4578999999999875
No 324
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=32.86 E-value=44 Score=22.48 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 100 LAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
...++...+.++.++...+|+++||-.-
T Consensus 125 ~~~R~~~~l~~l~~~~~~~vlvVsHg~~ 152 (213)
T 3hjg_A 125 FSQRVSRAWSQIINDINDNLLIVTHGGV 152 (213)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeCHHH
Confidence 3444666666665443468999999753
No 325
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.72 E-value=57 Score=22.27 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
--..|+++|+|--..+.| ..++.+.+++ ..+. .|++++++
T Consensus 78 ~~~~~DlvllD~~lp~~~---G~~l~~~lr~---~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 78 REDHPDLILLDLGLPDFD---GGDVVQRLRK---NSALPIIVLTARD 118 (249)
T ss_dssp HHSCCSEEEEECCSCHHH---HHHHHHHHHT---TCCCCEEEEESCC
T ss_pred hcCCCCEEEEcCCCCCCC---HHHHHHHHHc---CCCCCEEEEECCC
Confidence 346899999997655432 3334444443 2233 45556555
No 326
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=32.56 E-value=44 Score=22.38 Aligned_cols=28 Identities=7% Similarity=-0.051 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhc-CCcEEEEEcCCHHH
Q psy17960 101 AHYFWKYLNRLAHT-DKRTIIITTHYIEE 128 (137)
Q Consensus 101 ~~~i~~~l~~~~~~-~~~tvi~~tH~~~~ 128 (137)
..++...+.++.+. .+.+|+++||..-.
T Consensus 128 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~i 156 (208)
T 2a6p_A 128 NDRADSAVALALEHMSSRDVLFVSHGHFS 156 (208)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEeCHHHH
Confidence 34456666666432 35689999998643
No 327
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=32.54 E-value=83 Score=18.89 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=23.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
-..|+++|+|-...+.|- ..+.+.+++.. .+..||+.|.
T Consensus 47 ~~~~dlvllD~~lp~~~g---~~l~~~l~~~~--~~~~ii~ls~ 85 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDG---IELVDNILKLY--PDCSVIFMSG 85 (141)
T ss_dssp TSCCSEEEEESCCSSSCH---HHHHHHHHHHC--TTCEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhhC--CCCcEEEEeC
Confidence 357999999987777664 24455555432 2444554443
No 328
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=32.45 E-value=54 Score=21.85 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhc-CCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNRLAHT-DKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~~~~~-~~~tvi~~tH~~~ 127 (137)
..++.+.+.++.+. .+.+|+++||..-
T Consensus 126 ~~R~~~~l~~l~~~~~~~~vlvVsHg~~ 153 (207)
T 1h2e_A 126 QQRALEAVQSIVDRHEGETVLIVTHGVV 153 (207)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEcCHHH
Confidence 34455556665433 3579999999864
No 329
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=32.42 E-value=88 Score=23.63 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
..+++++|-|.+|++ .+.+.+..+. ...++++|.+.....+
T Consensus 356 ~fD~Vv~dPPr~g~~-----~~~~~l~~~~---p~~ivyvsc~p~tlar 396 (433)
T 1uwv_A 356 GFDKVLLDPARAGAA-----GVMQQIIKLE---PIRIVYVSCNPATLAR 396 (433)
T ss_dssp CCSEEEECCCTTCCH-----HHHHHHHHHC---CSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCCccHH-----HHHHHHHhcC---CCeEEEEECChHHHHh
Confidence 579999999999985 2444444432 3478899998876543
No 330
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=32.41 E-value=85 Score=19.00 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++|+|--..+.|-. .+.+.+++.....+. .|+++++.
T Consensus 60 ~~~dlillD~~lp~~~g~---~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGR---EVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHhCcCcCCCeEEEEECCC
Confidence 369999999877777642 344444442111233 45555554
No 331
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=32.40 E-value=77 Score=18.52 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++++|--..+.|-. ++.+.+++.. .... .|+++++.
T Consensus 47 ~~~dlvllD~~l~~~~g~---~~~~~l~~~~-~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 47 KRPDILLLDIIMPHLDGL---AVLERIRAGF-EHQPNVIMLTAFG 87 (130)
T ss_dssp HCCSEEEEESCCSSSCHH---HHHHHHHHHC-SSCCEEEEEEETT
T ss_pred CCCCEEEEecCCCCCCHH---HHHHHHHhcC-CCCCcEEEEecCC
Confidence 579999999877776642 3445554421 1233 45555554
No 332
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.34 E-value=73 Score=18.22 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.2
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++++|--..+.|- ..+.+.+++.. ..-..++++++.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKID-PNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHC-TTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhC-CCCeEEEEeCCC
Confidence 47999999987766653 23455555432 122345555554
No 333
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.47 E-value=62 Score=23.27 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=30.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+++++++||.- .+....+..+...+.+.. .+..+++++....
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH 151 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCcc
Confidence 357899999974 456677888888887653 3456777776653
No 334
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=31.42 E-value=93 Score=20.54 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=32.2
Q ss_pred hcCCCeEEEcCCCCCC----------------C---HHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 81 LHSPDIIVLDEPTSGV----------------D---PLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 81 ~~~p~illlDEPt~gL----------------D---~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+|+|+++|=|..-= + -..++.+.+.++++.+ .|..|+++.-.++..
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~-~g~nVVl~~k~I~d~ 91 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQ-LKPDVVITEKGISDL 91 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHT-TCCSEEEESSCBCHH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhh-cCCcEEEECCcccHH
Confidence 3699999999765421 1 1244556777888764 588898887666543
No 335
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=31.38 E-value=35 Score=24.20 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=31.7
Q ss_pred CCCCCChHHHHHHHHHHHHhcC--CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 62 LCSTLSGGQARRVSIAVTLLHS--PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 62 ~~~~LS~G~kqrv~ia~al~~~--p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
..+...+.+..+..+.+.++.. ++++=+ |-+ .+. ++.+.+.+..++.|..||+|.||.
T Consensus 90 EGG~~~~~~~~~~~ll~~~~~~~~~d~iDv-El~--~~~----~~~~~l~~~a~~~~~kiI~S~Hdf 149 (258)
T 4h3d_A 90 EGGEKLISRDYYTTLNKEISNTGLVDLIDV-ELF--MGD----EVIDEVVNFAHKKEVKVIISNHDF 149 (258)
T ss_dssp GTCSCCCCHHHHHHHHHHHHHTTCCSEEEE-EGG--GCH----HHHHHHHHHHHHTTCEEEEEEEES
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCchhhHH-hhh--ccH----HHHHHHHHHHHhCCCEEEEEEecC
Confidence 3455666677788777766544 444322 221 122 222333333334578899999985
No 336
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=30.91 E-value=88 Score=19.46 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=18.3
Q ss_pred HHHHHHHHhhcCCcEEEEEcCCHHHHHh
Q psy17960 104 FWKYLNRLAHTDKRTIIITTHYIEEARQ 131 (137)
Q Consensus 104 i~~~l~~~~~~~~~tvi~~tH~~~~~~~ 131 (137)
....+.++.+ .+..++++.|..+....
T Consensus 97 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 97 NLYLTLQLME-MGANLLLALNKMDLAKS 123 (165)
T ss_dssp HHHHHHHHHH-TTCCEEEEEECHHHHHH
T ss_pred hHHHHHHHHh-cCCCEEEEEEchHhccc
Confidence 3445555543 47789999999987643
No 337
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.84 E-value=83 Score=18.40 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++|+|-...+.|.. .+.+.+++.. .+..||+.|..
T Consensus 45 ~~~dlii~d~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~~ 83 (134)
T 3f6c_A 45 LKPDIVIIDVDIPGVNGI---QVLETLRKRQ--YSGIIIIVSAK 83 (134)
T ss_dssp HCCSEEEEETTCSSSCHH---HHHHHHHHTT--CCSEEEEEECC
T ss_pred cCCCEEEEecCCCCCChH---HHHHHHHhcC--CCCeEEEEeCC
Confidence 589999999887776642 3444444432 23445554443
No 338
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=30.84 E-value=84 Score=22.43 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=28.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHh---------hcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLA---------HTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~---------~~~~~tvi~~tH~ 125 (137)
+..++++||. ..|....+..++..+.+.. ...+..+|.+|+.
T Consensus 96 ~~g~L~LDEi-~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEI-GDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESC-TTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEecc-ccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 4679999995 4567788888888876532 0123567777775
No 339
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=30.71 E-value=25 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHHhcCC--------------CeEEEcCCCC-CCCHHHH
Q psy17960 65 TLSGGQARRVSIAVTLLHSP--------------DIIVLDEPTS-GVDPLLA 101 (137)
Q Consensus 65 ~LS~G~kqrv~ia~al~~~p--------------~illlDEPt~-gLD~~~~ 101 (137)
-+.+|+.+.-+|.+++-.+. -.+++||.++ .|+....
T Consensus 201 ~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~~~ 252 (266)
T 1fs5_A 201 ILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTL 252 (266)
T ss_dssp EEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHHHH
T ss_pred EEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccchH
Confidence 35788888888988887543 5799999997 5665433
No 340
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=30.63 E-value=53 Score=19.82 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 100 LAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
..+++.+.++++.++.+..||++|-++
T Consensus 37 ~~ee~~~~~~~l~~~~digIIlIte~i 63 (102)
T 2i4r_A 37 SDEEIVKAVEDVLKRDDVGVVIMKQEY 63 (102)
T ss_dssp SHHHHHHHHHHHHHCSSEEEEEEEGGG
T ss_pred CHHHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 346677777777765577888887654
No 341
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=30.59 E-value=1.2e+02 Score=20.16 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=13.5
Q ss_pred cCCCeEEEcCCCCCCCH
Q psy17960 82 HSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~ 98 (137)
..|+++|+|--..+.|-
T Consensus 48 ~~~dlvilD~~l~~~~g 64 (238)
T 2gwr_A 48 LRPDLVLLDLMLPGMNG 64 (238)
T ss_dssp HCCSEEEEESSCSSSCH
T ss_pred CCCCEEEEeCCCCCCCH
Confidence 47999999987766664
No 342
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=30.53 E-value=68 Score=21.45 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCCC----CCHHHHHHHHHHHHHHhhcC-CcEEEEEc
Q psy17960 83 SPDIIVLDEPTSG----VDPLLAHYFWKYLNRLAHTD-KRTIIITT 123 (137)
Q Consensus 83 ~p~illlDEPt~g----LD~~~~~~i~~~l~~~~~~~-~~tvi~~t 123 (137)
+|+|++-||-.+| +|+.-...+..+-..+.... |.-+.++|
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 8999999999444 56665555555444443322 44454443
No 343
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=30.29 E-value=1e+02 Score=19.17 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEE
Q psy17960 42 SVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TII 120 (137)
Q Consensus 42 ~~~~~~~~~~~~~~l~~~~~~~~~LS~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi 120 (137)
.....+..+++..|.. .+..-+.|+.- +...--.+|+++|+|=-.-++|-. ++.+.+++.....+. .|+
T Consensus 23 ~~r~~l~~~L~~~G~~----~v~~a~~g~~a---l~~~~~~~~DlillD~~MP~mdG~---el~~~ir~~~~~~~ipvI~ 92 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFN----NTQEADDGLTA---LPMLKKGDFDFVVTDWNMPGMQGI---DLLKNIRADEELKHLPVLM 92 (134)
T ss_dssp HHHHHHHHHHHHTTCC----CEEEESSHHHH---HHHHHHHCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTCCEEE
T ss_pred HHHHHHHHHHHHcCCc----EEEEECCHHHH---HHHHHhCCCCEEEEcCCCCCCCHH---HHHHHHHhCCCCCCCeEEE
Confidence 3455566666655542 12233455542 233334689999999888788743 344445443221233 456
Q ss_pred EEcCCHH
Q psy17960 121 ITTHYIE 127 (137)
Q Consensus 121 ~~tH~~~ 127 (137)
+++|.-.
T Consensus 93 lTa~~~~ 99 (134)
T 3to5_A 93 ITAEAKR 99 (134)
T ss_dssp EESSCCH
T ss_pred EECCCCH
Confidence 6666543
No 344
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=30.11 E-value=1.1e+02 Score=19.37 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=15.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHh
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~ 112 (137)
+-.+++-|+- ||-+ ..+..+..++..+.
T Consensus 33 g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~ 60 (143)
T 3ilx_A 33 EYDLVITDIG-SGLN-MKRKGFLKLLRMIL 60 (143)
T ss_dssp CCSEEEEEES-CTTC-TTCHHHHHHHHHHH
T ss_pred CCeEEEEcCc-cccc-CCcHHHHHHHHHHH
Confidence 4455444544 6665 45556666666554
No 345
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=29.83 E-value=64 Score=22.42 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhc---CCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNRLAHT---DKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~~~~~---~~~tvi~~tH~~~ 127 (137)
..++...+.++.++ .+.+|++|||..-
T Consensus 176 ~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 176 VERCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp HHHHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 34455566665432 3579999999864
No 346
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=29.80 E-value=65 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhh---cCCcEEEEEcCCHHH
Q psy17960 102 HYFWKYLNRLAH---TDKRTIIITTHYIEE 128 (137)
Q Consensus 102 ~~i~~~l~~~~~---~~~~tvi~~tH~~~~ 128 (137)
.++...+.++.+ ..+.+|++|||..-.
T Consensus 168 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~i 197 (264)
T 3mbk_A 168 NRSFQVTKEIISECKSKGNNILIVAHASSL 197 (264)
T ss_dssp HHHHHHHHHHHHHHTTSCSEEEEEECTTHH
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 345555555432 236799999998543
No 347
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=29.60 E-value=1.2e+02 Score=19.86 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=22.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++|+|--..+.|-. .+.+.+++. .+..||+.|..
T Consensus 47 ~~~dlvllD~~l~~~~g~---~~~~~l~~~---~~~~ii~lt~~ 84 (230)
T 2oqr_A 47 AGADIVLLDLMLPGMSGT---DVCKQLRAR---SSVPVIMVTAR 84 (230)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHHH---CSCSEEEEECC
T ss_pred cCCCEEEEECCCCCCCHH---HHHHHHHcC---CCCCEEEEeCC
Confidence 579999999877666642 344445442 23444444433
No 348
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=29.58 E-value=13 Score=26.37 Aligned_cols=63 Identities=21% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCC-CCCCCCCCC-hHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHH
Q psy17960 43 VEAVIKDLQLVLDLPP-GNQLCSTLS-GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111 (137)
Q Consensus 43 ~~~~~~~~~~~~~l~~-~~~~~~~LS-~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~ 111 (137)
.+.++..+.+ .|.+. +--+.+.|+ --|-+-++=|+| . -.+ .=|||.|.|..+-..+.++..+.
T Consensus 147 vetAiaml~d-mG~~SvKffPm~Gl~~l~E~~avAka~a--~-~g~--~lEPTGGIdl~N~~~I~~i~l~a 211 (249)
T 3m0z_A 147 LETAIALLKD-MGGSSIKYFPMGGLKHRAEFEAVAKACA--A-HDF--WLEPTGGIDLENYSEILKIALDA 211 (249)
T ss_dssp HHHHHHHHHH-TTCCEEEECCCTTTTTHHHHHHHHHHHH--H-TTC--EEEEBSSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCeeeEeecCCcccHHHHHHHHHHHH--H-cCc--eECCCCCccHhhHHHHHHHHHHc
Confidence 4445544444 33332 333444443 344454444444 3 233 45999999999999999887653
No 349
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=29.39 E-value=77 Score=21.38 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCCcEEEEE
Q psy17960 93 TSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122 (137)
Q Consensus 93 t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~ 122 (137)
-+|||+.....+.++++...+ .|..+.++
T Consensus 30 v~gLdp~~a~al~~m~~aA~~-~Gi~l~v~ 58 (179)
T 1xp2_A 30 AGGMYKITSDKTRNVIKKMAK-EGIYLCVA 58 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHH-cCCeEEEE
Confidence 368999999999999988764 46654443
No 350
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=29.36 E-value=1.6e+02 Score=27.52 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHh--cCCCeEEEcCCCCCCC-H------------HHHHHHHHHHHHH---hhcCCcEEEEEcCCH
Q psy17960 73 RVSIAVTLL--HSPDIIVLDEPTSGVD-P------------LLAHYFWKYLNRL---AHTDKRTIIITTHYI 126 (137)
Q Consensus 73 rv~ia~al~--~~p~illlDEPt~gLD-~------------~~~~~i~~~l~~~---~~~~~~tvi~~tH~~ 126 (137)
-+.+++.++ .+|++++.|..++-.. . ...+.+...++.+ .++.+++||+++|--
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 445566554 5799999998876542 1 1223344555554 466799999998853
No 351
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.19 E-value=92 Score=18.36 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=21.9
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
..|+++|+|--..+.|.. .+.+.+++.....+..||++|
T Consensus 53 ~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s 91 (143)
T 3cnb_A 53 VKPDVVMLDLMMVGMDGF---SICHRIKSTPATANIIVIAMT 91 (143)
T ss_dssp TCCSEEEEETTCTTSCHH---HHHHHHHTSTTTTTSEEEEEE
T ss_pred cCCCEEEEecccCCCcHH---HHHHHHHhCccccCCcEEEEe
Confidence 579999999877776642 344444431111244454444
No 352
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.88 E-value=92 Score=18.29 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=13.3
Q ss_pred cC-CCeEEEcCCCCCCCH
Q psy17960 82 HS-PDIIVLDEPTSGVDP 98 (137)
Q Consensus 82 ~~-p~illlDEPt~gLD~ 98 (137)
.. |+++|+|--..+.|-
T Consensus 50 ~~~~dlvi~D~~l~~~~g 67 (136)
T 3hdv_A 50 QKRIGLMITDLRMQPESG 67 (136)
T ss_dssp CTTEEEEEECSCCSSSCH
T ss_pred CCCCcEEEEeccCCCCCH
Confidence 44 899999987777764
No 353
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=28.80 E-value=52 Score=26.01 Aligned_cols=48 Identities=10% Similarity=0.276 Sum_probs=34.1
Q ss_pred hcCCCeEEEcCC-------------CCCCCH------HHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 81 LHSPDIIVLDEP-------------TSGVDP------LLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 81 ~~~p~illlDEP-------------t~gLD~------~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+|+|+++|-| .+..+- ..++.+.+.++++.+ .|.-++++.-+++..
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~~~ 297 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKK-SGANVVLCQKGIDDV 297 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-hCCCEEEECCCccHH
Confidence 579999999998 333333 234456788888764 578899998777543
No 354
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=28.77 E-value=35 Score=26.20 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHHHHh-----cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 73 RVSIAVTLL-----HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 73 rv~ia~al~-----~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
-++++.+|+ ..|+++++=|---.+ +.+.+.+++..++.+.+||+++
T Consensus 196 ~lAl~aglA~~~~~~gad~ilIPE~~f~~-----~~~~~~i~~~~~~~~~~iIvVa 246 (419)
T 3hno_A 196 WIAAAGGLASSPEREIPVVILFPEISFDK-----QKFLAKVDSCVKKFGYCSVVVS 246 (419)
T ss_dssp HHHHGGGGGCCSSSCCCEEEECTTSCCCH-----HHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHHHHhcccCCCCceEEEeCCCCCCH-----HHHHHHHHHHHHhCCCEEEEEe
Confidence 578888888 579988886643333 3555656554333455666665
No 355
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=28.71 E-value=92 Score=22.33 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHhcCCCeEEE-----cCCCC--CCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCCHHHHHhc
Q psy17960 76 IAVTLLHSPDIIVL-----DEPTS--GVDPLLAHYFWKYLNRLAHTDKR-TIIITTHYIEEARQA 132 (137)
Q Consensus 76 ia~al~~~p~illl-----DEPt~--gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~~~~~~~~ 132 (137)
+..|+-.+|.-.-| +|-|+ |||. ....+.+.+++++. .|. +=+|+--|.+.++.+
T Consensus 79 i~ial~~kP~~vtLVPEkreE~TTegGldv-~~~~L~~~i~~L~~-~GIrVSLFIDpd~~qi~aA 141 (260)
T 3o6c_A 79 LNLALKLKPHRVTLVPEKREELTTEGGLCL-NHAKLKQSIEKLQN-ANIEVSLFINPSLEDIEKS 141 (260)
T ss_dssp HHHHHHHCCSEEEECCCSGGGBCTTSSBCT-TCTTHHHHHHHHHH-TTCEEEEEECSCHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCCCccCCCCChhh-CHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHH
Confidence 44466678886555 46665 8999 88889999999975 465 558998888777653
No 356
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=28.69 E-value=61 Score=19.93 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 99 LLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
...+++.+.++++.++.+..||++|.++..
T Consensus 31 t~~ee~~~~~~~l~~~~digIIlIte~ia~ 60 (111)
T 2qai_A 31 ESVERARNKLRELLERDDVGIILITERLAQ 60 (111)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEEHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCeEEEEEcHHHHh
Confidence 345678888888876667888888866543
No 357
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=28.56 E-value=14 Score=26.55 Aligned_cols=63 Identities=16% Similarity=0.033 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCC-ChHHHHHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 43 VEAVIKDLQLVLDLPPGNQLCSTL-SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~~~~~~L-S~G~kqrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
.+.++..+.+..+-..+--+.+.| +--|-+-++=|+|= -.+ .=|||.|.|..+-..+.++..+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~---~g~--~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAE---EGF--ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHH---HTC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHH---cCc--eECCCCCccHhHHHHHHHHHHH
Confidence 445554444443322233344444 33445555544443 233 4599999999999999888755
No 358
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=28.46 E-value=96 Score=18.38 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=24.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-..|+++++|--..+.|-. .+...+++.. .....|++++++
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERW-PETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHC-TTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCcEEEEeCCC
Confidence 3579999999877777642 3444454432 112345555554
No 359
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.34 E-value=0.97 Score=30.26 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=15.0
Q ss_pred CcEEEEeccCCCCCCCCHHHHH
Q psy17960 8 SMLGFMPQEIALFEEFTISETF 29 (137)
Q Consensus 8 ~~i~~~~q~~~l~~~ltv~e~l 29 (137)
..++|+||++..|+.+++.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 51 EGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp BTTTBEECCHHHHHHHHHHTCE
T ss_pred cCceEEeccHHHHHHHHhcCcE
Confidence 3578888887777666665554
No 360
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=28.27 E-value=97 Score=18.34 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.5
Q ss_pred cCCCeEEEcCCCCCCCH
Q psy17960 82 HSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~ 98 (137)
..|+++|+|--..+.|-
T Consensus 58 ~~~dlii~D~~l~~~~g 74 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG 74 (143)
T ss_dssp CCCSEEEEETTCTTSCH
T ss_pred CCCCEEEEecCCCCCCH
Confidence 57999999987766664
No 361
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=28.18 E-value=55 Score=22.65 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhc---CCcEEEEEcCCHH
Q psy17960 102 HYFWKYLNRLAHT---DKRTIIITTHYIE 127 (137)
Q Consensus 102 ~~i~~~l~~~~~~---~~~tvi~~tH~~~ 127 (137)
.++...+.++.++ .+.+|++|||..-
T Consensus 167 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (263)
T 3c7t_A 167 KRGEVAMQAAVNDTEKDGGNVIFIGHAIT 195 (263)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 3445556655432 3578999999864
No 362
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.10 E-value=97 Score=18.30 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=23.1
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
-..|+++|+|--..+.|-. .+.+.+++.....+.-||+.|.
T Consensus 49 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDGW---DTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp TCCCEEEEEESCCSSSCHH---HHHHHHHHTTCCTTEEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCCEEEEEC
Confidence 3579999999877666642 3444444411122444555543
No 363
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=28.05 E-value=98 Score=18.31 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=18.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNR 110 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~ 110 (137)
..|+++|+|--..+.|-. .+.+.+++
T Consensus 59 ~~~dlvi~D~~l~~~~g~---~~~~~l~~ 84 (146)
T 3ilh_A 59 RWPSIICIDINMPGINGW---ELIDLFKQ 84 (146)
T ss_dssp CCCSEEEEESSCSSSCHH---HHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHH---HHHHHHHH
Confidence 679999999877776643 34555554
No 364
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=28.04 E-value=29 Score=25.57 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHh--------cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHH
Q psy17960 68 GGQARRVSIAVTLL--------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130 (137)
Q Consensus 68 ~G~kqrv~ia~al~--------~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~ 130 (137)
+++++.-.+..++- ..|+++. +|+++..+...+++.|.+.... +..+|.+....
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~----iSA~~g~Gi~~L~~~I~~~~~~-----~~~~~~~~~~R 290 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIR----ISARSGEGISEMWDKMKDFQDL-----MLASGELTAKR 290 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEE----CCTTTCTTHHHHHHHHHHHHHH-----HHHHSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEE----EecCCCCCHHHHHHHHHHHHHH-----HhhCchHHHHH
Confidence 44455555555542 2466554 9999999999999999887542 35678887653
No 365
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=27.84 E-value=47 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhc---CCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNRLAHT---DKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~~~~~---~~~tvi~~tH~~~ 127 (137)
..++...+.++... .+.+|+++||..-
T Consensus 137 ~~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 166 (211)
T 1fzt_A 137 AERVLPYYKSTIVPHILKGEKVLIAAHGNS 166 (211)
T ss_dssp HHHHHHHHHHHHTTHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEeChHH
Confidence 34566666665321 3568999999854
No 366
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=27.52 E-value=12 Score=26.49 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=28.1
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.+++++++||. -.++......+...+.+. ..+..+|+++....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~--~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSS--SSSEEEEEEESCGG
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 45889999995 446666666666665432 13556777777654
No 367
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.50 E-value=1.1e+02 Score=18.56 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=24.0
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-..|+++|+|-...+.|.. .+.+.+++.. .+..||++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~--~~~~ii~ls~~ 88 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY--PDIERVVISGY 88 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC--TTSEEEEEECG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC--CCCcEEEEecC
Confidence 4579999999887776643 3455554432 24445544443
No 368
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=27.24 E-value=35 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=32.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+|+|+++|.+.+. .+++.+.++++.+ .|..++++..+.+..
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~-~g~~lvii~~~I~~~ 255 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQ-TGKPLLIIAEDVEGE 255 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHT-TTCCEEEEESCBCHH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHh-cCCCEEEEcCCccHH
Confidence 468999999998664 3457788888764 588888888776543
No 369
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=27.12 E-value=1e+02 Score=18.30 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred cCCCeEEEcCCCC-CCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTS-GVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~-gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++|+|--.. |.|-. .+.+.+++. ..-..|+++++.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~---~~~~~l~~~--~~~~ii~ls~~~ 88 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGV---QTALAIQQI--SELPVVFLTAHT 88 (140)
T ss_dssp CCCSEEEEESSCSSSCCHH---HHHHHHHHH--CCCCEEEEESSS
T ss_pred CCCCEEEEeccCCCCCCHH---HHHHHHHhC--CCCCEEEEECCC
Confidence 5799999997654 45532 344444443 222345555554
No 370
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=27.09 E-value=61 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=16.2
Q ss_pred HHHHHHHHHH-Hhh--cCCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNR-LAH--TDKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~-~~~--~~~~tvi~~tH~~~ 127 (137)
..++...+.+ +.+ ..+.+|+++||-.-
T Consensus 155 ~~R~~~~l~~~i~~~~~~~~~vlvVsHg~~ 184 (240)
T 1qhf_A 155 IDRLLPYWQDVIAKDLLSGKTVMIAAHGNS 184 (240)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEeCHHH
Confidence 3445555554 322 14678999999764
No 371
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=27.00 E-value=94 Score=17.80 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=37.5
Q ss_pred HHHhcCC-CeEEEc-CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 78 VTLLHSP-DIIVLD-EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 78 ~al~~~p-~illlD-EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
.++...+ +.+++| .-.+.+|..+...+.+..+++++ .|..+.++.-...
T Consensus 37 ~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~-~g~~l~l~~~~~~ 87 (110)
T 1sbo_A 37 NFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKI-NGKEFILSSLKES 87 (110)
T ss_dssp THHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHH-TTCEEEEESCCHH
T ss_pred HHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3343344 788999 88999999999999999999875 5777777665543
No 372
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=26.92 E-value=1.4e+02 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=18.2
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHh
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~ 112 (137)
..|+++|+|--..+.|- ..+.+.+++..
T Consensus 24 ~~~dlvl~D~~~p~~~g---~~~~~~l~~~~ 51 (237)
T 3cwo_X 24 LKPDIVTMDITMPEMNG---IDAIKEIMKID 51 (237)
T ss_dssp HCCSCEEEECCSTTSSH---HHHHHHHHHHS
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHhC
Confidence 47999999976666664 34455555443
No 373
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=26.91 E-value=1e+02 Score=18.88 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 86 IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 86 illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-+.||-=.+.|++.+...+.++...+....+..|.+..|-
T Consensus 25 ~i~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~i~I~Ght 64 (129)
T 2kgw_A 25 PIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYT 64 (129)
T ss_dssp CBCCCTTSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEECC
T ss_pred ceEeCCCCcccCHHHHHHHHHHHHHHHhCCCceEEEEEEe
Confidence 3556666677777777776666665554334466777663
No 374
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.90 E-value=98 Score=17.97 Aligned_cols=42 Identities=10% Similarity=0.195 Sum_probs=20.3
Q ss_pred HhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 80 l~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
--.+|+++|+|-...+.| ...+.+.+++.. ..-..|+++++.
T Consensus 48 ~~~~~dlvi~d~~l~~~~---g~~~~~~l~~~~-~~~~ii~~t~~~ 89 (130)
T 3eod_A 48 GGFTPDLMICDIAMPRMN---GLKLLEHIRNRG-DQTPVLVISATE 89 (130)
T ss_dssp TTCCCSEEEECCC--------CHHHHHHHHHTT-CCCCEEEEECCC
T ss_pred hcCCCCEEEEecCCCCCC---HHHHHHHHHhcC-CCCCEEEEEcCC
Confidence 345799999997655543 223444444432 122345555554
No 375
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=26.75 E-value=45 Score=19.40 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=22.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCCH
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHYI 126 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~~ 126 (137)
..|+++++|--..+.|- ..+.+.+++.....+. .|+++++.-
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG---IQFIKHLRRESMTRDIPVVMLTARGE 87 (127)
T ss_dssp SCCSEEEEESEETTEEH---HHHHHHHHTSTTTTTSCEEEEEETTH
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 46999999976666553 2344444432111233 455555553
No 376
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=26.63 E-value=1.4e+02 Score=20.59 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
.+.....+++++|-. ..++|.. +.++++..++ .|..++...|..+++..+
T Consensus 96 ~~~~aGad~I~l~~~-~~~~p~~---l~~~i~~~~~-~g~~v~~~v~t~eea~~a 145 (229)
T 3q58_A 96 ALAQAGADIIAFDAS-FRSRPVD---IDSLLTRIRL-HGLLAMADCSTVNEGISC 145 (229)
T ss_dssp HHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHH-TTCEEEEECSSHHHHHHH
T ss_pred HHHHcCCCEEEECcc-ccCChHH---HHHHHHHHHH-CCCEEEEecCCHHHHHHH
Confidence 356678999999964 4455643 4444444443 478899999999998763
No 377
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=26.42 E-value=1.2e+02 Score=21.55 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=26.4
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEPT--SGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEPt--~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-|- +.||.....++.+.+.++..... +.||++.
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 80 (276)
T 3rrv_A 40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITG 80 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 45567674 88999999999888888865434 3444443
No 378
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=26.37 E-value=1e+02 Score=17.87 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=23.1
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
-..|+++++|--..+.|-. .+.+.+++.. .+. .|++++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~~~ 85 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDLK--INIPSIVITGHG 85 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHTT--CCCCEEEEECTT
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhcC--CCCCEEEEECCC
Confidence 4579999999777666642 3444454432 233 44555553
No 379
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=26.34 E-value=92 Score=18.84 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=27.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
+++|-=.+-|++.++..+.++...+....+..|.+..|-
T Consensus 19 i~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~Ght 57 (123)
T 3oon_A 19 IEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHT 57 (123)
T ss_dssp EEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECC
T ss_pred EEeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEEEe
Confidence 667777778888887777777666654444567777774
No 380
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=26.24 E-value=1.5e+02 Score=21.53 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred cCCCeEEEcCC------CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHH
Q psy17960 82 HSPDIIVLDEP------TSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127 (137)
Q Consensus 82 ~~p~illlDEP------t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~ 127 (137)
....++|+|-| |.|+....- -.+.|..+++.-+.+|+.+++|..
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L--~~~~I~~L~k~~~~lvvt~saD~p 197 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSEL--NNKFITPLLRQCKVLIIVSNSDIF 197 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHH--HHHTHHHHHHTCSEEEEEEECGGG
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHH--HHHHHHHHHHhcceEEEEeccCcc
Confidence 45679999999 556776654 034444444444678888888874
No 381
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=26.08 E-value=1e+02 Score=17.99 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++++|-...+.|-. .+...+++.. ..-..|+++++.
T Consensus 46 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 85 (136)
T 1mvo_A 46 EKPDLIVLDVMLPKLDGI---EVCKQLRQQK-LMFPILMLTAKD 85 (136)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEECTT
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHcCC-CCCCEEEEECCC
Confidence 579999999877777642 3444554432 112244455443
No 382
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=25.83 E-value=1.3e+02 Score=21.27 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=25.9
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
++-||-| -+.|+.....++.+.+.++...... +|++|
T Consensus 38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVlt 76 (280)
T 2f6q_A 38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLT 76 (280)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEe
Confidence 3456665 5889999989998888888654455 44443
No 383
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=25.58 E-value=1.2e+02 Score=18.34 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=23.0
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++|+|--..+.|- ..+.+.+++.. .+. .|+++++.
T Consensus 60 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~--~~~~ii~~s~~~ 99 (152)
T 3eul_A 60 HLPDVALLDYRMPGMDG---AQVAAAVRSYE--LPTRVLLISAHD 99 (152)
T ss_dssp HCCSEEEEETTCSSSCH---HHHHHHHHHTT--CSCEEEEEESCC
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CCCeEEEEEccC
Confidence 58999999987777663 23444444432 233 44555554
No 384
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=25.57 E-value=79 Score=24.94 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=34.2
Q ss_pred hcCCCeEEEcCC-------------CCCCCH------HHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 81 LHSPDIIVLDEP-------------TSGVDP------LLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 81 ~~~p~illlDEP-------------t~gLD~------~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+|+|+++|-| .+..+- ..++.+.+.++++.+ .|.-++++.-+++..
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~~~ 298 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKS-VGANVVITQKGIDDM 298 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHH-TTCCEEEESSCBCHH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCEEEECCCcCHH
Confidence 579999999999 444443 234446788888764 578899988776543
No 385
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=25.52 E-value=16 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.3
Q ss_pred EEeccCCCCCCCCHHHHHHH
Q psy17960 12 FMPQEIALFEEFTISETFAF 31 (137)
Q Consensus 12 ~~~q~~~l~~~ltv~e~l~~ 31 (137)
+++|++.+| .+|+.||+.+
T Consensus 79 ~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 79 KMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEEEEECT-TCSCTTHHHH
T ss_pred cceeccccc-cCCcHHHHHH
Confidence 789998888 8999999864
No 386
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.30 E-value=1.2e+02 Score=24.73 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=29.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHh---------hcCCcEEEEEcC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLA---------HTDKRTIIITTH 124 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~---------~~~~~tvi~~tH 124 (137)
.+.+++|||. ..+++.....+++.+.+-. ...+..+|++|+
T Consensus 579 ~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 579 PYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp SSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred CCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 4579999998 4578888888888887621 012456788887
No 387
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=25.08 E-value=74 Score=21.73 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=16.8
Q ss_pred HHHHHHHHHH-Hhh--cCCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNR-LAH--TDKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~-~~~--~~~~tvi~~tH~~~ 127 (137)
..++...+.+ +.+ ..+.+|+++||-.-
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (249)
T 1e58_A 157 IDRVIPYWNETILPRMKSGERVIIAAHGNS 186 (249)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcChHH
Confidence 4445555555 332 24678999999753
No 388
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=25.00 E-value=1.1e+02 Score=19.57 Aligned_cols=39 Identities=10% Similarity=0.118 Sum_probs=27.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEE-EEEcCCH
Q psy17960 87 IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI-IITTHYI 126 (137)
Q Consensus 87 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~tv-i~~tH~~ 126 (137)
.+.|+ ..=|++..+..+-+.+.++.++.|.-| |++..++
T Consensus 16 ~V~D~-A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV~sl 55 (148)
T 2kpt_A 16 NVTDY-TGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSF 55 (148)
T ss_dssp SEEES-SSCSCHHHHHHHHHHHHHHHHHSCCEEEEEECSCC
T ss_pred eeeeC-CCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 35564 667899999999999999976666544 4444444
No 389
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=24.82 E-value=1.5e+02 Score=20.79 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=25.6
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCc-EEEEE
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKR-TIIIT 122 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~ 122 (137)
++-||-| -+.||.....++.+.+.++...... .||++
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 60 (267)
T 3r9t_A 21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLT 60 (267)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 3556655 6889999999999999888654443 44443
No 390
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.68 E-value=1e+02 Score=17.40 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=23.9
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
-..|+++++|-...+.|-. .+.+.+++.. ..-..++++++.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~~~ 83 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKK-KDAKIILLTAYS 83 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEESCG
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccC-CCCeEEEEECCc
Confidence 3579999999877776642 3455555432 122344555543
No 391
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=24.67 E-value=1.1e+02 Score=17.97 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=23.1
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~ 125 (137)
..|+++|+|=-..+.|-. .+.+.+++.....-..|+++++.
T Consensus 51 ~~~dlvllD~~mp~~~G~---~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGL---LSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHhhcCCCCCEEEEECCC
Confidence 579999999776676642 34444443211112345555554
No 392
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=24.58 E-value=62 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhh---cCCcEEEEEcCCHH
Q psy17960 102 HYFWKYLNRLAH---TDKRTIIITTHYIE 127 (137)
Q Consensus 102 ~~i~~~l~~~~~---~~~~tvi~~tH~~~ 127 (137)
.++...+.++.. ..+.+|+++||-.-
T Consensus 165 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 193 (257)
T 3gp3_A 165 ARVLPLWNESIAPAVKAGKQVLIAAHGNS 193 (257)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcHH
Confidence 445555555432 24678999999754
No 393
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=24.58 E-value=98 Score=21.15 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=29.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHh---------hcCCcEEEEEcCC
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLA---------HTDKRTIIITTHY 125 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~---------~~~~~tvi~~tH~ 125 (137)
+..++++||.- .++...+..++..+.+-. ...+..+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 46799999964 577788888888876521 1124567777775
No 394
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.57 E-value=1.2e+02 Score=17.98 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=13.8
Q ss_pred cCCCeEEEcCCCCCCCH
Q psy17960 82 HSPDIIVLDEPTSGVDP 98 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~ 98 (137)
..|+++|+|--..+.|-
T Consensus 61 ~~~dlvi~D~~l~~~~g 77 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG 77 (149)
T ss_dssp CCCSEEEECSCCSSSCH
T ss_pred CCCcEEEEECCCCCCCH
Confidence 57999999987777664
No 395
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=24.52 E-value=1.3e+02 Score=20.92 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=25.6
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKR-TIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++...... .||++.
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (265)
T 3rsi_A 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61 (265)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3556666 4888888888888888887654443 444443
No 396
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.44 E-value=1.1e+02 Score=17.60 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=23.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE-EEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT-IIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t-vi~~tH~ 125 (137)
-..|+++++|--..+.|-. .+.+.+++.. .+.. |+++++.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~~~ 85 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVID--ENIRVIIMTAYG 85 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHHC--TTCEEEEEESSC
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHhC--CCCCEEEEEccC
Confidence 3579999999877666642 3444454432 2344 4455543
No 397
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=24.44 E-value=1.3e+02 Score=21.07 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=27.7
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++..... +.||++.
T Consensus 23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 63 (274)
T 3tlf_A 23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63 (274)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 4667777 489999999999999998865444 3455544
No 398
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=24.41 E-value=1.5e+02 Score=20.56 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=23.8
Q ss_pred EEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEE
Q psy17960 87 IVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIIT 122 (137)
Q Consensus 87 lllDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~ 122 (137)
+-||-| -+.||.....++.+.+.++....+ +.||++
T Consensus 20 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 58 (260)
T 1mj3_A 20 IQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLT 58 (260)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEE
Confidence 556666 578888888888888887764434 344443
No 399
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=24.28 E-value=63 Score=22.53 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=16.9
Q ss_pred HHHHHHHHHH-Hhhc--CCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNR-LAHT--DKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~-~~~~--~~~tvi~~tH~~~ 127 (137)
..++...+.+ +.+. .+.+|++|||-.-
T Consensus 162 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 191 (267)
T 2hhj_A 162 LERLLPYWNERIAPEVLRGKTILISAHGNS 191 (267)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcCcHH
Confidence 3445555555 4321 4678999999754
No 400
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=24.24 E-value=63 Score=24.52 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCeEEEcCCCCCC-------CHHHHHHHHHHHHHHh----hcCCcEEEEEcCCHHH
Q psy17960 75 SIAVTLLHSPDIIVLDEPTSGV-------DPLLAHYFWKYLNRLA----HTDKRTIIITTHYIEE 128 (137)
Q Consensus 75 ~ia~al~~~p~illlDEPt~gL-------D~~~~~~i~~~l~~~~----~~~~~tvi~~tH~~~~ 128 (137)
.+..+-...|.+|++||--+-. ........-+++..+. ...+..||.+|+..+.
T Consensus 219 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 219 LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 3444556789999999975421 1111222223333321 1235678888887643
No 401
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=24.22 E-value=1.6e+02 Score=20.24 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=26.0
Q ss_pred EEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 87 IVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 87 lllDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
+-||-| -+.|+.....++.+.+.++..... +.||++.
T Consensus 13 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (250)
T 2a7k_A 13 ITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYG 52 (250)
T ss_dssp EEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 456655 588899888888888888765434 4555555
No 402
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=24.10 E-value=90 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCCeEEEcCCC--------------CCCCH-----HHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 83 SPDIIVLDEPT--------------SGVDP-----LLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 83 ~p~illlDEPt--------------~gLD~-----~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+|+|+++|-|. +.-|. ..++.+.+.++++.+ .|.-++++.-+++.
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~-~g~~lvI~~~~I~~ 304 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIID-AGAQVVLTTKGIDD 304 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHT-TCCSEEEESSCCCG
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh-hCCCEEEEcCCCCH
Confidence 99999999885 22332 234457888888874 58888888876643
No 403
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.96 E-value=1.2e+02 Score=17.84 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=22.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEE-EEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII-ITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi-~~tH~ 125 (137)
..|+++|+|--..+.|-. ++.+.+++.. .+.-|| ++++.
T Consensus 48 ~~~dlvilD~~lp~~~g~---~~~~~l~~~~--~~~~ii~ls~~~ 87 (133)
T 3b2n_A 48 YNPNVVILDIEMPGMTGL---EVLAEIRKKH--LNIKVIIVTTFK 87 (133)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHTT--CSCEEEEEESCC
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHHHC--CCCcEEEEecCC
Confidence 579999999776666632 3444444421 234444 44443
No 404
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.93 E-value=1.3e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=23.3
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE-EEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT-IIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t-vi~~tH~ 125 (137)
-..|+++|+|--..+.|- ..+.+.+++.. .+.. |+++++.
T Consensus 64 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~--~~~~ii~ls~~~ 104 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTG---LEVLEWIRSEK--LETKVVVVTTFK 104 (150)
T ss_dssp TSCCSEEEECSSCSSSCH---HHHHHHHHHTT--CSCEEEEEESCC
T ss_pred ccCCCEEEEeCCCCCCcH---HHHHHHHHHhC--CCCeEEEEeCCC
Confidence 467999999987777663 23444444432 2344 4455544
No 405
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=23.87 E-value=1.4e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=32.8
Q ss_pred hcCCCeEEEcCCC-------------CCCC-H-----HHHHHHHHHHHHHhhcCCcEEEEEcCCHHH
Q psy17960 81 LHSPDIIVLDEPT-------------SGVD-P-----LLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128 (137)
Q Consensus 81 ~~~p~illlDEPt-------------~gLD-~-----~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~ 128 (137)
+.+|+|+++|-|. +..+ . ..++.+.+.++++.+ .|..++++.-.++.
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~-~g~~vVi~~~~I~d 301 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEE-TGANIVLSKLPIGD 301 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHT-TTCSEEEESSCCCH
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEECCCccH
Confidence 7899999999983 2332 1 233556778888764 58889998876654
No 406
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=23.87 E-value=2e+02 Score=20.41 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=31.1
Q ss_pred HHHHHhcCCCeEEE-cCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 76 IAVTLLHSPDIIVL-DEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 76 ia~al~~~p~illl-DEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
+..|...+.+.++| +. .|+......+.+..+ +.|..+++..|+.+++..+
T Consensus 128 v~~A~~~GAD~VlLi~a---~l~~~~l~~l~~~a~----~lGl~~lvev~t~ee~~~A 178 (272)
T 3qja_A 128 IHEARAHGADMLLLIVA---ALEQSVLVSMLDRTE----SLGMTALVEVHTEQEADRA 178 (272)
T ss_dssp HHHHHHTTCSEEEEEGG---GSCHHHHHHHHHHHH----HTTCEEEEEESSHHHHHHH
T ss_pred HHHHHHcCCCEEEEecc---cCCHHHHHHHHHHHH----HCCCcEEEEcCCHHHHHHH
Confidence 34445678887776 33 334444333433332 3588999999999998763
No 407
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=23.80 E-value=1.6e+02 Score=20.57 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=28.2
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.|+.....++.+.+.++..... +.||++.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 55 (269)
T 1nzy_A 15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITG 55 (269)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEEC
Confidence 4557777 599999999999999999865444 3555554
No 408
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=23.74 E-value=1.6e+02 Score=20.34 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.2
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++..... +.||++.
T Consensus 17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 57 (258)
T 2pbp_A 17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTG 57 (258)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 3456666 478888888888888888764433 3455444
No 409
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=23.73 E-value=1.6e+02 Score=19.42 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC-CHHH
Q psy17960 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH-YIEE 128 (137)
Q Consensus 84 p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH-~~~~ 128 (137)
-..+|.|= |.+......+.+.+++.. ......|++|| +.+-
T Consensus 50 ~~~iliD~---G~~~~~~~~~~~~l~~~~-~~~i~~ii~TH~H~DH 91 (227)
T 1mqo_A 50 KGLVLVDS---SWDDKLTKELIEMVEKKF-QKRVTDVIITHAHADR 91 (227)
T ss_dssp TEEEEESC---CSSHHHHHHHHHHHHHHH-TSCEEEEECCCCSHHH
T ss_pred CeEEEEEC---CCChHHHHHHHHHHHHhc-CCCceEEEeCCCCchh
Confidence 34677784 444544556677776652 23567788888 4443
No 410
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=23.69 E-value=1.6e+02 Score=20.59 Aligned_cols=38 Identities=11% Similarity=0.241 Sum_probs=26.5
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKR-TIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++...... .||++.
T Consensus 17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 57 (266)
T 3fdu_A 17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRG 57 (266)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3556766 5889999999999999888654443 444443
No 411
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=23.62 E-value=1.7e+02 Score=20.17 Aligned_cols=50 Identities=14% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhc
Q psy17960 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQA 132 (137)
Q Consensus 78 ~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~ 132 (137)
.++....+++++|-. ..++|.. +.++++..++ .|..++...|..+++..+
T Consensus 96 ~~~~~Gad~V~l~~~-~~~~p~~---l~~~i~~~~~-~g~~v~~~v~t~eea~~a 145 (232)
T 3igs_A 96 ALAQAGAAIIAVDGT-ARQRPVA---VEALLARIHH-HHLLTMADCSSVDDGLAC 145 (232)
T ss_dssp HHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHH-TTCEEEEECCSHHHHHHH
T ss_pred HHHHcCCCEEEECcc-ccCCHHH---HHHHHHHHHH-CCCEEEEeCCCHHHHHHH
Confidence 456678999999964 4455643 4444444443 478899999999998753
No 412
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=23.44 E-value=1.6e+02 Score=20.32 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=25.6
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.|+.....++.+.+.++..... ..||++.
T Consensus 15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 55 (257)
T 2ej5_A 15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITG 55 (257)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEEC
Confidence 3456655 588888888888888888765433 3555554
No 413
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=23.26 E-value=97 Score=19.83 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=22.6
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEE-EEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII-ITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi-~~tH~ 125 (137)
..|+++|+|-...+.| +. +...+++.. .+..|| ++++.
T Consensus 51 ~~~dlvl~D~~mp~~~--g~--l~~~~~~~~--~~~~ii~lt~~~ 89 (196)
T 1qo0_D 51 VPVDVVFTSIFQNRHH--DE--IAALLAAGT--PRTTLVALVEYE 89 (196)
T ss_dssp SCCSEEEEECCSSTHH--HH--HHHHHHHSC--TTCEEEEEECCC
T ss_pred CCCCEEEEeCCCCccc--hH--HHHHHhccC--CCCCEEEEEcCC
Confidence 5899999998776665 22 555554431 244444 44443
No 414
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=23.25 E-value=1.9e+02 Score=20.14 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=27.7
Q ss_pred eEEEcCCC-CCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEPT-SGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEPt-~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-|- +.|+.....++.+.+.++....+ +.||++.
T Consensus 19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 58 (263)
T 3l3s_A 19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHG 58 (263)
T ss_dssp EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 45566664 89999999999999999865444 3555543
No 415
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=23.16 E-value=1.7e+02 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.112 Sum_probs=11.6
Q ss_pred CCcEEEEEcCCHHHHHhc
Q psy17960 115 DKRTIIITTHYIEEARQA 132 (137)
Q Consensus 115 ~~~tvi~~tH~~~~~~~~ 132 (137)
.+..|=++.|..+++..+
T Consensus 107 ~~~iiG~S~ht~eea~~A 124 (540)
T 3nl6_A 107 PDMVIGWSVGFPEEVDEL 124 (540)
T ss_dssp TTSEEEEEECSHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHH
Confidence 355666777777776654
No 416
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=23.08 E-value=1.8e+02 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=26.5
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.|+.....++.+.+.++..... +.||++.
T Consensus 16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 56 (268)
T 3i47_A 16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKA 56 (268)
T ss_dssp EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 3566766 388999999999999888865444 3455544
No 417
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=23.04 E-value=1.5e+02 Score=20.55 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=28.1
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
.+-||-| -+.||.....++.+.+.++..... +.||++.
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (254)
T 3gow_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4667777 489999999999999999875444 3455544
No 418
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=22.94 E-value=1.7e+02 Score=23.84 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHHHHHHhh
Q psy17960 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH 113 (137)
Q Consensus 83 ~p~illlDEPt~gLD~~~~~~i~~~l~~~~~ 113 (137)
+-+++++||. --+|......+..+++.+..
T Consensus 318 ~l~~lVlDEA-H~l~~~~~~~l~~Il~~l~~ 347 (666)
T 3o8b_A 318 AYDIIICDEC-HSTDSTTILGIGTVLDQAET 347 (666)
T ss_dssp SCSEEEETTT-TCCSHHHHHHHHHHHHHTTT
T ss_pred cccEEEEccc-hhcCccHHHHHHHHHHhhhh
Confidence 4788999999 78898877777766666643
No 419
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=22.90 E-value=49 Score=24.99 Aligned_cols=15 Identities=40% Similarity=0.514 Sum_probs=12.7
Q ss_pred CCCeEEEcCCCCCCC
Q psy17960 83 SPDIIVLDEPTSGVD 97 (137)
Q Consensus 83 ~p~illlDEPt~gLD 97 (137)
..+++++|-|++|..
T Consensus 315 ~fD~Vl~D~Pcsg~g 329 (429)
T 1sqg_A 315 QFDRILLDAPCSATG 329 (429)
T ss_dssp CEEEEEEECCCCCGG
T ss_pred CCCEEEEeCCCCccc
Confidence 458999999999864
No 420
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=22.81 E-value=1.2e+02 Score=17.63 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=22.4
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++|+|=-..+.|-. .+.+.+++....... .|+++++.
T Consensus 50 ~~~dlvi~D~~~p~~~g~---~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 50 ADTKVLITDWNMPEMNGL---DLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp TTCCEEEECSCCSSSCHH---HHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcCCCCCCeEEEEeCCC
Confidence 369999999777776632 344444432111233 44555554
No 421
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=22.73 E-value=1e+02 Score=24.55 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEcC-CC-CCCCHHH-HHHHHHHHHHH-hhcCCcEEEEEcCCH
Q psy17960 68 GGQARRVSIAVTLLHSPDIIVLDE-PT-SGVDPLL-AHYFWKYLNRL-AHTDKRTIIITTHYI 126 (137)
Q Consensus 68 ~G~kqrv~ia~al~~~p~illlDE-Pt-~gLD~~~-~~~i~~~l~~~-~~~~~~tvi~~tH~~ 126 (137)
|..-=-+++..+|+..|+++++=| |+ ...+... .+.+.+.+++. .+..+.+||+++--.
T Consensus 252 GR~aG~lAl~a~LA~gad~ilIPE~~~~~~~~L~~~~~~i~~~i~~r~~~gk~~~IIvVaEG~ 314 (555)
T 2f48_A 252 GRSASHVALECALKTHPNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGL 314 (555)
T ss_dssp CTTSCHHHHHHHHHHCCSEECCHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCEEEEEETTG
T ss_pred CcCHHHHHHHHHhhcCCCEEEecCccccccCCHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 333346899999999999999866 32 2344333 35666666543 333455666665433
No 422
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=22.70 E-value=1.1e+02 Score=20.14 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhc------CCcEEEEEcCCHH
Q psy17960 99 LLAHYFWKYLNRLAHT------DKRTIIITTHYIE 127 (137)
Q Consensus 99 ~~~~~i~~~l~~~~~~------~~~tvi~~tH~~~ 127 (137)
...+++.+.+.++.+. .+.+|+++||-.-
T Consensus 112 ~~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~~ 146 (202)
T 3mxo_A 112 EDGARIEAAFRNYIHRADARQEEDSYEIFICHANV 146 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccCCCceEEEEeCHHH
Confidence 3445566677766532 2568999999753
No 423
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=22.68 E-value=1.8e+02 Score=20.03 Aligned_cols=38 Identities=21% Similarity=0.475 Sum_probs=25.1
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| .+.||.....++.+.+.++..... +.||++.
T Consensus 11 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 51 (253)
T 1uiy_A 11 VVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTG 51 (253)
T ss_dssp EEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3456666 588888888888888887764433 3455544
No 424
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=22.59 E-value=1.5e+02 Score=20.56 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=26.9
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++..... +.||++.
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 59 (256)
T 3trr_A 19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITG 59 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4566766 488999999999999988865444 3455544
No 425
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=22.53 E-value=72 Score=21.90 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHH---hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc--CCcEEEEEcCCHHH
Q psy17960 69 GQARRVSIAVTL---LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT--DKRTIIITTHYIEE 128 (137)
Q Consensus 69 G~kqrv~ia~al---~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~--~~~tvi~~tH~~~~ 128 (137)
|++..-.+.+++ ..+++++|+--+.+.+... ...+++.+.+.... .+..+|+++|-.+.
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 355555666666 3788877766555555543 34455666554321 15689999986654
No 426
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=22.48 E-value=2.1e+02 Score=20.31 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=24.2
Q ss_pred eEEEc---CCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEc
Q psy17960 86 IIVLD---EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123 (137)
Q Consensus 86 illlD---EPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~t 123 (137)
++-|+ |+-+.|+.....++.+.+.++.......||++.
T Consensus 35 ~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~r~vVltg 75 (291)
T 2fbm_A 35 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSA 75 (291)
T ss_dssp EEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34455 456788888888888888777543334555544
No 427
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=22.36 E-value=94 Score=21.48 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.5
Q ss_pred cCCCeEEEcCCCC
Q psy17960 82 HSPDIIVLDEPTS 94 (137)
Q Consensus 82 ~~p~illlDEPt~ 94 (137)
.+.++++|||...
T Consensus 102 ~~~kIiiLDEad~ 114 (212)
T 1tue_A 102 TDTKVAMLDDATT 114 (212)
T ss_dssp TTCSSEEEEEECH
T ss_pred CCCCEEEEECCCc
Confidence 3578999999873
No 428
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=22.28 E-value=3e+02 Score=22.94 Aligned_cols=51 Identities=12% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-CCcEEEEEc
Q psy17960 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTIIITT 123 (137)
Q Consensus 72 qrv~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-~~~tvi~~t 123 (137)
=-+++..+|+..|+++++=|---.++. ..+.+.+.+++.... ++.+||+++
T Consensus 202 G~LAl~aglA~gAd~ilIPE~p~~~~~-~~~~v~~~i~~~~~~gk~~~IVvVa 253 (766)
T 3o8o_B 202 GWLALLAGIATSADYIFIPEKPATSSE-WQDQMCDIVSKHRSRGKRTTIVVVA 253 (766)
T ss_dssp CHHHHHHHHHHTCSEEECTTCCCCTTH-HHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred hHHHHHHHHhcCCCEEEccCCCCChHH-HHHHHHHHHHHHHhcCCCceEEEEe
Confidence 357888899999999999875555552 345666777664322 234666664
No 429
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=22.18 E-value=82 Score=19.15 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 102 HYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 102 ~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+++.+.++++.++.+..||++|.++
T Consensus 32 ee~~~~~~~l~~~~digIIlIte~~ 56 (109)
T 2d00_A 32 EEAQSLLETLVERGGYALVAVDEAL 56 (109)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEETTT
T ss_pred HHHHHHHHHHhhCCCeEEEEEeHHH
Confidence 5566666666555566666666544
No 430
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=21.69 E-value=1.7e+02 Score=20.07 Aligned_cols=36 Identities=17% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEE
Q psy17960 87 IVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIIT 122 (137)
Q Consensus 87 lllDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~ 122 (137)
+-||-| .+.|+.....++.+.+.++..... +.||++
T Consensus 16 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 54 (243)
T 2q35_A 16 ITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILT 54 (243)
T ss_dssp EEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 445554 577788777777777777654333 344443
No 431
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=21.65 E-value=1.6e+02 Score=20.75 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=26.6
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.||.....++.+.+.++..... +.||++.
T Consensus 32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 72 (279)
T 3t3w_A 32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRA 72 (279)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 4566766 488999999999999988865444 3444443
No 432
>3b55_A Succinoglycan biosynthesis protein; Q81BN2, NESG, BCR135, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus cereus atcc 14579} SCOP: c.150.1.3 PDB: 2rad_A
Probab=21.55 E-value=1.2e+02 Score=23.29 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhcc
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d 133 (137)
+.-....+.+++|++|=|+|=|-.--.+-+ .++++.+.++.|.++|...-+.......|
T Consensus 65 l~~L~~~i~~ariV~lGEatHG~~ef~~~r-~~l~r~Lve~~Gf~~va~E~d~~~~~~vn 123 (451)
T 3b55_A 65 LKPLKNMVGSASIVGLGEATHGAHEVFTMK-HRIVKYLVSEKGFTNLVLEEGWDRALELD 123 (451)
T ss_dssp GTTHHHHHTTCSEEEEEESCTTBHHHHHHH-HHHHHHHHHHSCCCEEEEEEEHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeCCCCCchHHHHHH-HHHHHHHHHhcCCeEEEEecChHHHHHHH
Confidence 334456678999999999998876554443 45566666777999999998887765544
No 433
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=21.53 E-value=1.7e+02 Score=20.29 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=25.3
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHHhhcCC-cEEEEE
Q psy17960 86 IIVLDEPT--SGVDPLLAHYFWKYLNRLAHTDK-RTIIIT 122 (137)
Q Consensus 86 illlDEPt--~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~ 122 (137)
.+-||-|- +.||......+.+.+.++..... +.||++
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVlt 57 (256)
T 3qmj_A 18 TLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLT 57 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 35566664 78899988888888888765444 344443
No 434
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=21.44 E-value=1.7e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=25.4
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-| -+.|+.....++.+.+.++..... +.||++.
T Consensus 27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 67 (265)
T 3qxi_A 27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG 67 (265)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3556666 378888888888888888765434 3444443
No 435
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=21.35 E-value=1.3e+02 Score=23.59 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=32.9
Q ss_pred hcCCCeEEEcCCCCC-------------CC------HHHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 81 LHSPDIIVLDEPTSG-------------VD------PLLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 81 ~~~p~illlDEPt~g-------------LD------~~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
+.+|+|+++|-|.+. .+ ...++.+.+.++++.+ .|.-++++.-++
T Consensus 229 ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~-~g~~vvi~~~~I 292 (528)
T 3p9d_D 229 KEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKK-AKCNVLLIQKSI 292 (528)
T ss_dssp ESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHH-TTCCEEEESSCS
T ss_pred ccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEEeCCc
Confidence 579999999998762 22 1234568888888875 578899888766
No 436
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=21.25 E-value=1.6e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=28.0
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEPT--SGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEPt--~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-||-|- +.||.....++.+.+.++.+... +.||++.
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 59 (265)
T 3qxz_A 19 VLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTG 59 (265)
T ss_dssp EEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 45667664 89999999999999999875544 3455544
No 437
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=21.25 E-value=1.3e+02 Score=17.52 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=23.2
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcE-EEEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT-IIITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~t-vi~~tH~ 125 (137)
-..|+++|+|--..+.|-. .+.+.+++.. .+.. |+++++.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~~~ 85 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHKLR--PGMKKIMVTGYA 85 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHHHC--TTSEEEEEESCC
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHhhC--CCCcEEEEeccc
Confidence 4679999999776666632 3444454432 2344 4455543
No 438
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=21.22 E-value=1.4e+02 Score=17.87 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=17.3
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..|+++|+|--..+.| ...+.+.+++.. .+.-||++|-
T Consensus 49 ~~~dlvi~d~~l~~~~---g~~~~~~l~~~~--~~~~ii~ls~ 86 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAE---AIDGLVRLKRFD--PSNAVALISG 86 (154)
T ss_dssp CCCSEEEECC---------CHHHHHHHHHHC--TTSEEEEC--
T ss_pred CCCCEEEEeCCCCCCc---hHHHHHHHHHhC--CCCeEEEEeC
Confidence 5799999997654433 223444454432 2444554443
No 439
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=21.19 E-value=2.2e+02 Score=20.09 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCeEEE-----cCCCC--CCCHH-HHHHHHHHHHHHhhcCCc-EEEEEcCCHHHHHhc
Q psy17960 75 SIAVTLLHSPDIIVL-----DEPTS--GVDPL-LAHYFWKYLNRLAHTDKR-TIIITTHYIEEARQA 132 (137)
Q Consensus 75 ~ia~al~~~p~illl-----DEPt~--gLD~~-~~~~i~~~l~~~~~~~~~-tvi~~tH~~~~~~~~ 132 (137)
.+..|+-.+|.-.-| +|-|+ |||.. ....+.+.+++++. .|. +-+|+--|.+.++.+
T Consensus 79 mi~ia~~~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~-~GIrVSLFIDpd~~qi~aA 144 (243)
T 1m5w_A 79 MLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLAD-AGIQVSLFIDADEEQIKAA 144 (243)
T ss_dssp HHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHH-TTCEEEEEECSCHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHH
Confidence 445566678885555 36665 99995 55668888999975 465 559999999887654
No 440
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=21.16 E-value=1e+02 Score=20.79 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcC--CcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNRLAHTD--KRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~~~~~~--~~tvi~~tH~~~ 127 (137)
..++...+.++.++. +.+|++|||..-
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 345666666665432 258999999853
No 441
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=21.14 E-value=1.6e+02 Score=20.50 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=27.1
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHHhhcCC-cEEEEEcC
Q psy17960 86 IIVLDEPT--SGVDPLLAHYFWKYLNRLAHTDK-RTIIITTH 124 (137)
Q Consensus 86 illlDEPt--~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~tH 124 (137)
++-||-|- +.|+.....++.+.+.++..... +.||++..
T Consensus 21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~ 62 (256)
T 3pe8_A 21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA 62 (256)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEES
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECC
Confidence 35566663 88999999999999988865444 35555543
No 442
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=21.05 E-value=82 Score=24.37 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCCeEEEcCCCCCCCH--------------------HHHHHHHHHHHHHhhcCCcEEEEEcCCH
Q psy17960 83 SPDIIVLDEPTSGVDP--------------------LLAHYFWKYLNRLAHTDKRTIIITTHYI 126 (137)
Q Consensus 83 ~p~illlDEPt~gLD~--------------------~~~~~i~~~l~~~~~~~~~tvi~~tH~~ 126 (137)
..+.+++|=|+||... ..+..+++...++-+. |..++++|..+
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp-GG~LvysTcs~ 249 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP-GGTLVYSTCTL 249 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE-EEEEEEEESCC
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC-CCEEEEecccC
Confidence 4689999999998632 1123444444444333 55788877543
No 443
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=20.93 E-value=2.2e+02 Score=19.98 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=27.2
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDKR-TIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~t 123 (137)
.+-||=| -+.|+.....++.+.+.++...... .||++.
T Consensus 27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg 67 (274)
T 4fzw_C 27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTG 67 (274)
T ss_dssp EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3556766 4789999999999999988765443 455544
No 444
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=20.92 E-value=80 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhh---cCCcEEEEEcCCHH
Q psy17960 102 HYFWKYLNRLAH---TDKRTIIITTHYIE 127 (137)
Q Consensus 102 ~~i~~~l~~~~~---~~~~tvi~~tH~~~ 127 (137)
.++...+.++.. ..+.+|++|||-.-
T Consensus 183 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 211 (274)
T 4emb_A 183 ARVIPYWTDEIAKEVLEGKKVIVAAHGNS 211 (274)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeCHHH
Confidence 445555555421 24678999999753
No 445
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=20.82 E-value=2.1e+02 Score=19.89 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCChHH---HHHHHHHHHHh---cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHh
Q psy17960 64 STLSGGQ---ARRVSIAVTLL---HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112 (137)
Q Consensus 64 ~~LS~G~---kqrv~ia~al~---~~p~illlDEPt~gLD~~~~~~i~~~l~~~~ 112 (137)
+++|.-. .+|+++..||. .+-++++.|+- .++....+.+.++|+.+.
T Consensus 94 R~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~ 146 (225)
T 1dmg_A 94 RDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQ 146 (225)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcC
Confidence 4444333 36777777774 35579999975 556667778888888874
No 446
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=20.67 E-value=1.2e+02 Score=21.03 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=28.1
Q ss_pred eEEEcC--CCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEc
Q psy17960 86 IIVLDE--PTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITT 123 (137)
Q Consensus 86 illlDE--Pt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~t 123 (137)
++-||= +-+.|+.....++.+.+.++.+.... .||++.
T Consensus 12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg 52 (254)
T 3hrx_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 355664 57899999999999999998765453 455544
No 447
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18
Probab=20.62 E-value=1.6e+02 Score=20.52 Aligned_cols=53 Identities=8% Similarity=0.115 Sum_probs=35.3
Q ss_pred HHHHHhcC-CCeEEEcCCCCCCCHHHHHHHHHHHHHHhhc-CCcEEEEEcCCHHH
Q psy17960 76 IAVTLLHS-PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTIIITTHYIEE 128 (137)
Q Consensus 76 ia~al~~~-p~illlDEPt~gLD~~~~~~i~~~l~~~~~~-~~~tvi~~tH~~~~ 128 (137)
++..|..+ -.++.+|-|..|-.....+.+.+.+.++.+. ...-++++.|.+--
T Consensus 31 ~~~~L~~~G~~v~~~d~~g~g~s~~~~~~~~~~i~~~~~~~~~~~v~lvGhS~GG 85 (285)
T 1ex9_A 31 IPSALRRDGAQVYVTEVSQLDTSEVRGEQLLQQVEEIVALSGQPKVNLIGHSHGG 85 (285)
T ss_dssp HHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHHHHHHHCCSCEEEEEETTHH
T ss_pred HHHHHHhCCCEEEEEeCCCCCCchhhHHHHHHHHHHHHHHhCCCCEEEEEECHhH
Confidence 44555544 7899999998887776666666666554332 22468888998743
No 448
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=20.62 E-value=68 Score=25.35 Aligned_cols=48 Identities=10% Similarity=0.255 Sum_probs=31.8
Q ss_pred hcCCCeEEEcCCCC-------------CCCH------HHHHHHHHHHHHHhhcCCcEEEEEcCCHHHH
Q psy17960 81 LHSPDIIVLDEPTS-------------GVDP------LLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129 (137)
Q Consensus 81 ~~~p~illlDEPt~-------------gLD~------~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~ 129 (137)
+.+|+|+++|-|.. ..+- ..++.+.+.++++.+ .|.-++++.-+.+..
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~-~g~~lvi~~~~I~~~ 300 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQ-TGANVVFVQKGIDDL 300 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHH-hCcCEEEEcCCcCHH
Confidence 67999999999822 2211 122345777777765 477899988776543
No 449
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus cereus atcc 14579} SCOP: c.150.1.3
Probab=20.60 E-value=1.5e+02 Score=22.70 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcCCHHHHHhccc
Q psy17960 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADM 134 (137)
Q Consensus 74 v~ia~al~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH~~~~~~~~d~ 134 (137)
+.-....+.+++|++|=|+|=|-..-.+-+ .++++.+.++.|.++|...-+.......|+
T Consensus 64 l~~L~~~~~~ariV~lGEatHG~~e~~~~r-~~l~r~Lve~~gf~~va~E~~~~~~~~vd~ 123 (445)
T 2qgm_A 64 LKPLKKMIGNAQYVGLGENTHGSSEIFTMK-FRLVKYLVTEMGFTNFAMEEDWGNGLKLNE 123 (445)
T ss_dssp GHHHHHHHTTCSEEEECCSSSCBHHHHHHH-HHHHHHHHHHHCCCEEEEEEEHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEcCCCCCchHHHHHH-HHHHHHHHHhcCCeEEEEecChHHHHHHHH
Confidence 444556778999999999998876554443 445566666668999999988876655543
No 450
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=20.51 E-value=1.7e+02 Score=20.63 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=25.9
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHHHHHHhhcCCc-EEEEEc
Q psy17960 86 IIVLDEPT--SGVDPLLAHYFWKYLNRLAHTDKR-TIIITT 123 (137)
Q Consensus 86 illlDEPt--~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~t 123 (137)
++-||=|- +.|+.....++.+.+.++...... .||++.
T Consensus 37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 77 (278)
T 3h81_A 37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITG 77 (278)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEEC
Confidence 35566564 889999999998888887654343 445443
No 451
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=20.30 E-value=1.5e+02 Score=17.81 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=23.4
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||+.|-
T Consensus 56 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~ 94 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDGP---TLLARIHQQY--PSTTRILLTG 94 (153)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHHC--TTSEEEEECC
T ss_pred cCCCCEEEEeCCCCcCcHH---HHHHHHHhHC--CCCeEEEEEC
Confidence 3589999999877776642 3444454432 2444555543
No 452
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=20.27 E-value=1.9e+02 Score=18.76 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=23.5
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCc-EEEEEcCC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTHY 125 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~-tvi~~tH~ 125 (137)
..|+++|+|--..+.|-. .+.+.+++.. .+. .|+++++.
T Consensus 42 ~~~dlvllD~~lp~~~g~---~~~~~lr~~~--~~~~ii~lt~~~ 81 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY---EICRMIKETR--PETWVILLTLLS 81 (220)
T ss_dssp SCCSEEEEESBCSSSBHH---HHHHHHHHHC--TTSEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcC--CCCcEEEEEcCC
Confidence 789999999777666632 3445555432 234 44555544
No 453
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.10 E-value=1.5e+02 Score=17.49 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=21.5
Q ss_pred hcCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEE-EEEcCC
Q psy17960 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI-IITTHY 125 (137)
Q Consensus 81 ~~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tv-i~~tH~ 125 (137)
-..|+++|+|- ..+.| ...+.+.+++.. .+.-| +++++.
T Consensus 46 ~~~~dlvi~d~-~~~~~---g~~~~~~l~~~~--~~~pii~ls~~~ 85 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGEE---SLNLIRRIREEF--PDTKVAVLSAYV 85 (142)
T ss_dssp TSCCSEEEEEC-TTTHH---HHHHHHHHHHHC--TTCEEEEEESCC
T ss_pred ccCCCEEEEeC-CCCCc---HHHHHHHHHHHC--CCCCEEEEECCC
Confidence 36799999997 54432 334555555432 23444 444443
No 454
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=20.06 E-value=86 Score=21.48 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhh---cCCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNRLAH---TDKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~~~~---~~~~tvi~~tH~~~ 127 (137)
..++...+.++.. ..+.+|+++||-.-
T Consensus 166 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (258)
T 3kkk_A 166 VERVLPFWFDHIAPDILANKKVMVAAHGNS 195 (258)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHhhhccCCCEEEEEcCHHH
Confidence 3445555555311 24678999999754
No 455
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.05 E-value=1.4e+02 Score=17.39 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=22.6
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHHHHhhcCCcEEEEEcC
Q psy17960 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124 (137)
Q Consensus 82 ~~p~illlDEPt~gLD~~~~~~i~~~l~~~~~~~~~tvi~~tH 124 (137)
..|+++|+|--..+.|.. .+.+.+++.. .+.-||+.|.
T Consensus 50 ~~~dlvi~d~~l~~~~g~---~~~~~l~~~~--~~~~ii~~s~ 87 (137)
T 3hdg_A 50 HAPDVIITDIRMPKLGGL---EMLDRIKAGG--AKPYVIVISA 87 (137)
T ss_dssp HCCSEEEECSSCSSSCHH---HHHHHHHHTT--CCCEEEECCC
T ss_pred cCCCEEEEeCCCCCCCHH---HHHHHHHhcC--CCCcEEEEec
Confidence 589999999877776642 3444444432 2344555443
No 456
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=20.04 E-value=1.9e+02 Score=20.15 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=26.0
Q ss_pred eEEEcCC--CCCCCHHHHHHHHHHHHHHhhcCC-cEEEEEc
Q psy17960 86 IIVLDEP--TSGVDPLLAHYFWKYLNRLAHTDK-RTIIITT 123 (137)
Q Consensus 86 illlDEP--t~gLD~~~~~~i~~~l~~~~~~~~-~tvi~~t 123 (137)
++-|+-| -+.||.....++.+.+.++..... +.||++.
T Consensus 16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 56 (263)
T 3lke_A 16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQS 56 (263)
T ss_dssp EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 3455655 688999999999999888865433 3455444
No 457
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=20.02 E-value=99 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHHH-Hhh--cCCcEEEEEcCCHH
Q psy17960 101 AHYFWKYLNR-LAH--TDKRTIIITTHYIE 127 (137)
Q Consensus 101 ~~~i~~~l~~-~~~--~~~~tvi~~tH~~~ 127 (137)
..++...+.+ +.. ..+.+|+++||-.-
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAHGNS 186 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeChHH
Confidence 3445555544 321 24678999999754
Done!