RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17960
(137 letters)
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 137 bits (347), Expect = 7e-41
Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 1/121 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+G++PQE +L+ E T+ E FF++LY + + E I++L + L N+ TLSG
Sbjct: 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSG 139
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +R+SIA+ LLH P++++LDEPTSG+DP W+ L LA TI+++TH +EE
Sbjct: 140 GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE 199
Query: 129 A 129
A
Sbjct: 200 A 200
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 116 bits (294), Expect = 1e-33
Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTL 66
LG+ PQ ALF+E T+ E F+++L +P+S ++ ++ L VL L N+ TL
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTL 134
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGG R++S+A+ L+ P +++LDEPTSG+DP W + + R+II+TTH +
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM 192
Query: 127 EEA 129
+EA
Sbjct: 193 DEA 195
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 96.7 bits (242), Expect = 2e-26
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 36/123 (29%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSG 68
+G++P+E +L+E T+ E LSG
Sbjct: 74 RIGYLPEEPSLYENLTVRENL-----------------------------------KLSG 98
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +R+++A LLH P++++LDEPTSG+DP FW+ L L + +TI++++H +EE
Sbjct: 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEE 157
Query: 129 ARQ 131
A +
Sbjct: 158 AER 160
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 95.1 bits (237), Expect = 3e-25
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 1/123 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL-PPGNQLCSTLSG 68
+G + Q++++ +E T E ++LY +P + I +L + L ++L T SG
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSG 134
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G RR+ IA +L+H P+++ LDEPT G+DP + W+Y+ +L TI++TTHY+EE
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194
Query: 129 ARQ 131
A Q
Sbjct: 195 AEQ 197
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 92.6 bits (231), Expect = 2e-24
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDLQLVLDLPPGNQLCSTL 66
+G++PQE ++ FT+ E + + L IP V+A V + L+LV + +L
Sbjct: 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSL 131
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGG RRV IA L+ P I+++DEPT+G+DP F L+ L R +I++TH +
Sbjct: 132 SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGED--RIVILSTHIV 189
Query: 127 E 127
E
Sbjct: 190 E 190
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 91.3 bits (227), Expect = 4e-23
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL-PPGNQLCSTLSG 68
+G +PQ ++ E+ T E +LY +P+ E ++L + +L ++ T SG
Sbjct: 68 IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSG 127
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G RR+ IA +L+H PD++ LDEPT+G+DP W Y+ L TI++TTHY+EE
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV-TILLTTHYMEE 186
Query: 129 ARQ 131
A +
Sbjct: 187 ADK 189
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 88.5 bits (220), Expect = 1e-22
Identities = 43/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK------DLQLVLDLPPGNQLCS 64
++ Q+ L T+ ET + + L PR S +A+ K L+ + G L
Sbjct: 84 AYVRQDDILLPGLTVRETLTYTAILRL-PRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK 142
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+SGG+ RRVSIAV LL P +++LDEPTSG+D A L++LA + R +I+T H
Sbjct: 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRN-RIVILTIH 201
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 87.6 bits (218), Expect = 2e-22
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 2/127 (1%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG--NQLCSTL 66
+GF+ Q L + T+ E + + ++L VL L + S L
Sbjct: 84 KIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSEL 143
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGGQ +RV+IA L+++P II+ DEPT +D A + L L +TII+ TH
Sbjct: 144 SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203
Query: 127 EEARQAD 133
E A+ AD
Sbjct: 204 ELAKYAD 210
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 84.4 bits (210), Expect = 2e-21
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 30 AFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88
AF + +P +E +++ L+LV ++ TLSGGQ +RV+IA L PDI++
Sbjct: 98 AFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
Query: 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
LDEPT+G+DP + L +L + +TIII TH ++ +
Sbjct: 158 LDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLE 199
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 81.8 bits (203), Expect = 2e-20
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 29/116 (25%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSG 68
++G++PQ+ L T+ ET F +KL R LSG
Sbjct: 83 IIGYVPQDDILHPTLTVRETLMFAAKL----RG------------------------LSG 114
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
G+ +RVSIA+ L+ +P ++ LDEPTSG+D A L RLA T RTII + H
Sbjct: 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTG-RTIICSIH 169
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 80.8 bits (200), Expect = 3e-20
Identities = 33/67 (49%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV++A LL +PD+++LDEPTSG+DP + L LA + RT+II TH
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELA-EEGRTVIIVTHD 139
Query: 126 IEEARQA 132
E A A
Sbjct: 140 PELAELA 146
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 83.0 bits (205), Expect = 7e-20
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSG 68
+G +PQ L EFT+ E F + + + +EAVI L L + S LSG
Sbjct: 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSG 175
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G RR+++A L++ P +++LDEPT+G+DP H W+ L L K TI++TTH++EE
Sbjct: 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TILLTTHFMEE 234
Query: 129 A 129
A
Sbjct: 235 A 235
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 80.7 bits (199), Expect = 3e-19
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 2 RIATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL-PPGN 60
R +G +PQ L EFT+ E F + + + +EAVI L L +
Sbjct: 71 RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD 130
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
+ LSGG RR+++A L++ P +++LDEPT+G+DP H W+ L L K TI+
Sbjct: 131 VRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK-TIL 189
Query: 121 ITTHYIEEA 129
+TTH++EEA
Sbjct: 190 LTTHFMEEA 198
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 80.2 bits (198), Expect = 5e-19
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSG 68
+G +PQ L +FT+ E F + + + ++ A++ L L + LSG
Sbjct: 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSG 141
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G RR+++A L++ PD++VLDEPT+G+DP H W+ L L K TI++TTH++EE
Sbjct: 142 GMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK-TILLTTHFMEE 200
Query: 129 A 129
A
Sbjct: 201 A 201
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 78.8 bits (195), Expect = 6e-19
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 19 LFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARRVSIA 77
LF T+ + AF + +PR +E + + L+LV ++ LSGGQ +RV+IA
Sbjct: 92 LFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIA 150
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
L P+I++LDEPT+G+DP + L +L +TIII TH +E
Sbjct: 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV 202
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 80.0 bits (198), Expect = 7e-19
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP---GNQLCSTL 66
+G++ Q+I LF T++E A KL + ++ +L ++ L P ++ L
Sbjct: 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGGQ +RV +A L P I+++DEP +DP+ + + L +TI+ TH I
Sbjct: 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196
Query: 127 EEA 129
+EA
Sbjct: 197 DEA 199
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 78.0 bits (193), Expect = 2e-18
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPP-GNQLCSTLSG 68
G++ QE AL T+ + A +L ++ K+ L+LV L ++ LSG
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV-GLAGFEDKYPHQLSG 133
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +RV+IA L P +++LDEP +D L L RL ++T+++ TH ++E
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193
Query: 129 A 129
A
Sbjct: 194 A 194
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 76.8 bits (190), Expect = 3e-18
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+GF+ Q L + T E L +P+ ++L + L N S LSG
Sbjct: 84 IGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV+IA L + P II+ DEPT +D + L L TI++ TH E
Sbjct: 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203
Query: 129 ARQAD 133
A AD
Sbjct: 204 AEYAD 208
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 76.4 bits (189), Expect = 3e-18
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGG 69
G + Q+ ALF T++E AF KL +P++ + A +++ L+LV N+ LSGG
Sbjct: 75 GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGG 134
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
Q +RV++A L P +++LDEP S +D L + L L T I TH EEA
Sbjct: 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA 194
Query: 130 -RQAD----MRE 136
AD M E
Sbjct: 195 LALADRIAVMNE 206
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 74.3 bits (184), Expect = 1e-17
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R++IA LL P I++LDE TS +DP + L LA +T+I+ H
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHR 154
Query: 126 IEEARQAD 133
+ R AD
Sbjct: 155 LSTIRDAD 162
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 75.8 bits (187), Expect = 1e-17
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG---NQLCSTL 66
+G++ Q+I LF T+ E A KL P+ + +L ++ L P ++ L
Sbjct: 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHEL 136
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGGQ +RV +A L P ++++DEP +DP+ + RL +TI+ TH I
Sbjct: 137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI 196
Query: 127 EEA-RQAD 133
+EA R AD
Sbjct: 197 DEAFRLAD 204
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 75.1 bits (185), Expect = 1e-17
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
LGF+ L++ T E +F+ LY + + A +++L L + ++ S
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFST 139
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G ++V+IA L+H P +++LDEPT+G+D + +++ +L K I+ +TH ++E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK-CILFSTHIMQE 198
Query: 129 A 129
Sbjct: 199 V 199
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 73.7 bits (182), Expect = 4e-17
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLV-----LDLPPGNQL 62
G++ Q+ AL T+ + A +L +P++ ++ L+LV + P
Sbjct: 74 DRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---- 129
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
LSGG +RV++A L PD+++LDEP S +D L + L + +T+++
Sbjct: 130 -HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188
Query: 123 THYIEEA 129
TH I+EA
Sbjct: 189 THDIDEA 195
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 75.4 bits (185), Expect = 8e-17
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKL----YNIPRSSVEAVIKDLQLVLDLPPGNQLCST 65
LG PQ LF T++E F+++L + + +EA+++D L N+
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGL---HHKRNEEAQD 1061
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG R++S+A+ + ++VLDEPTSGVDP W L L + RTII++TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHH 1119
Query: 126 IEEA 129
++EA
Sbjct: 1120 MDEA 1123
Score = 68.1 bits (166), Expect = 3e-14
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAV----IKDLQLVLDLPPGNQLCST 65
+G+ PQ A+ + T E +++L +P +E V I+ L L L ++L T
Sbjct: 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL---YADRLAGT 2070
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG R++S A+ L+ P +++LDEPT+G+DP W + + + R +++T+H
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHS 2129
Query: 126 IEE 128
+EE
Sbjct: 2130 MEE 2132
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 72.6 bits (179), Expect = 2e-16
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
Q LSGGQ +RV+IA L+ P +I+ DEP + +DP + L R+ + T+
Sbjct: 139 YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITV 198
Query: 120 IITTHYIEEARQ 131
I++ H ++ AR+
Sbjct: 199 IVSLHQVDLARE 210
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 70.7 bits (174), Expect = 3e-16
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 39 PRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
R + V +D L L + LSGGQ +RV++A L PD+++LDEPTS +DP
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133
Query: 99 LLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130
+ L L T+++ TH ++EA
Sbjct: 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 70.8 bits (174), Expect = 4e-16
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+G++P+E L+ + + + + ++L + + I + L+L N+ LS
Sbjct: 72 IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSK 131
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G ++V ++H P++++LDEP SG+DP+ + LA K T+I++TH +E
Sbjct: 132 GNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK-TVILSTHQMEL 190
Query: 129 A 129
Sbjct: 191 V 191
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 71.5 bits (176), Expect = 6e-16
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEA-VIKDLQLVLDLPP--GNQLCST 65
+G + Q+ ALF T+ E AF + + +P S + V+ L+LV L + S
Sbjct: 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-GLRGAAADLYPSE 145
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG +RV++A + P+++ LDEPTSG+DP+ A + + L T+I+ TH
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD 205
Query: 126 IEEAR 130
++
Sbjct: 206 LDSLL 210
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 70.7 bits (174), Expect = 9e-16
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 7 ASMLGFMPQEIALFEEFTISETFA--------FFSKLYNIPRSSVEAVIKDLQLVLDLPP 58
A L ++PQ + T+ E F + VE ++ L L L
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HL-- 131
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
++ LSGG+ +RV IA L I++LDEPTS +D + L L T
Sbjct: 132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLT 191
Query: 119 IIITTHYIEEA-RQAD 133
+++ H + A R AD
Sbjct: 192 VVMVLHDLNLAARYAD 207
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 70.0 bits (172), Expect = 1e-15
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLY--NIPRSSVEAVIKDLQL--VLDLPPGNQLCSTL 66
G + Q+ ALF + E AF K R SV+ ++ L L +L+ P L
Sbjct: 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPA-----QL 132
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGG+ +RV++A L P++++LDEP S +D L L ++ +I TH +
Sbjct: 133 SGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL 192
Query: 127 EEA 129
EA
Sbjct: 193 SEA 195
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 70.4 bits (173), Expect = 1e-15
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
Q STLSGGQ +RV+IA L+ P II+ DEP + +DP A L + D T+I
Sbjct: 143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVI 202
Query: 121 ITTHYIEEARQ 131
+ H ++ A++
Sbjct: 203 VNLHQVDLAKK 213
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 70.0 bits (172), Expect = 2e-15
Identities = 28/71 (39%), Positives = 40/71 (56%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
Q LSGGQ +RV+IA L PD+I+ DEP + +DP + YL R+ D T+
Sbjct: 140 YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITV 199
Query: 120 IITTHYIEEAR 130
II H ++ A+
Sbjct: 200 IINLHQVDLAK 210
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 69.2 bits (170), Expect = 2e-15
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIP----RSSVEAVIKDLQLVLDLPPGNQLCST 65
LG++ Q AL E T+ E K + R + ++ + L L L Q
Sbjct: 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL---KQKIYE 134
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +RV++A +L P +I+ DEPT +DP L L K TIII TH
Sbjct: 135 LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK-TIIIVTHD 193
Query: 126 IEEARQAD 133
E A+QAD
Sbjct: 194 PEVAKQAD 201
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 69.7 bits (171), Expect = 2e-15
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 12/126 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA----VIKDLQL--VLDLPPGNQLC 63
+G + E L+ T E +F++L + R ++A + K LQL LD G
Sbjct: 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE--- 133
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
S G ++V+IA L+H P I+VLDEPTSG+D F ++ +L + R +I ++
Sbjct: 134 --FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL-KNEGRAVIFSS 190
Query: 124 HYIEEA 129
H ++E
Sbjct: 191 HIMQEV 196
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 69.1 bits (170), Expect = 3e-15
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 10 LGFMPQEIALFEEFTISET----FAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCST 65
+G++PQE ++F + T+ E +E ++++ + S+
Sbjct: 77 IGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI---THLRKSKASS 133
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
LSGG+ RRV IA L +P ++LDEP +GVDP+
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 69.2 bits (170), Expect = 3e-15
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 1 MRIATGASM--LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP 58
+R A A++ LG + Q+ L + ++ + + + L+ + R+ A I +L L L
Sbjct: 65 LRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLGLAE 124
Query: 59 -GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR 117
+ L+GG RRV IA LLH P +++LDEPT G+DP ++ LA
Sbjct: 125 RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 118 TIIITTHYIEEARQAD 133
+++ TH ++E D
Sbjct: 185 SVLWATHLVDEIEADD 200
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 68.9 bits (169), Expect = 4e-15
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD------LQLVLDLPPGNQLCS 64
++PQ ALF T+ + A+ K + + +E + + + +L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGG+ +RV+IA L+ +P I++LDEP S +D + L ++ T++ TH
Sbjct: 129 TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTH 188
Query: 125 YIEEAR 130
EEA
Sbjct: 189 DFEEAW 194
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 68.9 bits (169), Expect = 5e-15
Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 37 NIPRSSVEAVIKDLQLV------LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLD 90
+P ++ +I DL LD P N LSGGQ +RV+IA L +P+II+ D
Sbjct: 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-----LSGGQKQRVAIASVLALNPEIIIFD 167
Query: 91 EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
E TS +DP K + L T K+T+I TH ++EA AD
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILAD 210
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 68.3 bits (168), Expect = 6e-15
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 11 GFMPQEIALFEEFTISETFAFF-SKLYNIPRSSVEAVIKD-LQLVLDLPPG-NQLCSTLS 67
G + Q ALF+ T+ E AF + + + ++ + L+ V L + + LS
Sbjct: 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV-GLRGAEDLYPAELS 138
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GG +RV++A L P++++ DEPT+G+DP+ + + L T I+ TH ++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198
Query: 128 EARQA 132
A
Sbjct: 199 TAFAI 203
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 67.1 bits (164), Expect = 1e-14
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLH 82
+ + AF + + VE +++ L V + LSGG+ +RV+IA +
Sbjct: 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM 144
Query: 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
PD+++LDEPT+G+DP L RL T++I+TH ++ A
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGM-TVVISTHDVDLA 190
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 69.1 bits (169), Expect = 1e-14
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRS--------SVEAVIKDLQLVL--DLPPGN 60
GF+ Q+ L+ T+ ET F S L +P+S E+VI +L L + GN
Sbjct: 143 GFVTQDDILYPHLTVRETLVFCS-LLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
+SGG+ +RVSIA +L +P +++LDEPTSG+D A+ L LA K TI+
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK-TIV 260
Query: 121 ITTH 124
+ H
Sbjct: 261 TSMH 264
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 68.7 bits (168), Expect = 1e-14
Identities = 39/126 (30%), Positives = 64/126 (50%), Gaps = 2/126 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+G + Q+ ALF TI + + +L P + +L ++ L ++ LSG
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSG 132
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +RV +A L PDI+++DE S +DPL+ L +L T ++TI+ TH ++E
Sbjct: 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE 192
Query: 129 A-RQAD 133
A R D
Sbjct: 193 AIRIGD 198
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 67.8 bits (166), Expect = 2e-14
Identities = 27/121 (22%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSG 68
+G++P+E L+ + T+ + + ++L +P++ ++ ++ L++ + LS
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSK 133
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +++ ++H P++++LDEP SG+DP+ + L TII ++H +E
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA-TIIFSSHRMEH 192
Query: 129 A 129
Sbjct: 193 V 193
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 67.3 bits (165), Expect = 2e-14
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 10 LGFMPQEIALFEEFTIS----------ETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG 59
+G++PQ+ ++ F I+ +F +L + V+ ++ + + DL
Sbjct: 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGM-EDL--R 133
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
++ LSGGQ +RV +A L +PD+++LDEP +GVD + L L K T+
Sbjct: 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK-TV 192
Query: 120 IITTHYIEEARQ 131
++ TH +
Sbjct: 193 LMVTHDLGLVMA 204
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 67.6 bits (166), Expect = 3e-14
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 19/136 (13%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL------VLDLPPGNQLC 63
+G++ Q+ LF +I E A + P ++ E +I+ QL + +LP G
Sbjct: 549 VGYVLQDPFLFS-GSIRENIALGN-----PEATDEEIIEAAQLAGAHEFIENLPMGYDTP 602
Query: 64 -----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
+ LSGGQ +R+++A LL P I++LDE TS +DP + L ++ RT
Sbjct: 603 VGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRT 660
Query: 119 IIITTHYIEEARQADM 134
+II H + R AD
Sbjct: 661 VIIIAHRLSTIRSADR 676
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 66.0 bits (161), Expect = 4e-14
Identities = 37/121 (30%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+GF+ Q ALF+ T+ + AF ++ P++ ++A +++L ++ L G++ + LSG
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSG 133
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV++A L P +++LDEP +D + +L +L T + TH EE
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 129 A 129
A
Sbjct: 194 A 194
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 65.0 bits (159), Expect = 6e-14
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 21/129 (16%)
Query: 8 SMLGFMPQEI--ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDL---QLVLDLPPGNQL 62
+G++ Q++ LF + ++ E K + E V+KDL L P
Sbjct: 71 KSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP----- 124
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP----LLAHYFWKYLNRLAHTDKRT 118
+LSGGQ +R++IA LL D+++ DEPTSG+D + + + LA +
Sbjct: 125 -LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG----ELIRELA-AQGKA 178
Query: 119 IIITTHYIE 127
+I+ TH E
Sbjct: 179 VIVITHDYE 187
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 64.8 bits (159), Expect = 7e-14
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 32 FSKLYNIPRSSVEAVIKDLQLVLDL---PPGNQLC-----STLSGGQARRVSIAVTLLHS 83
F K ++ R E VIK L DL P G+ LSGGQ +R+S+A +
Sbjct: 88 FGKPFDEER--YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145
Query: 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADM 134
DI +LD+P S VD + + ++ + +T I+ TH ++ AD
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQ 196
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 64.4 bits (158), Expect = 8e-14
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW--KYLNRLAHTDKR 117
++ + LSGG+ +RV +A L P I++LDEPTS +D +AH + L RLA +
Sbjct: 92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLD--IAHQIELLELLRRLARERGK 149
Query: 118 TIIITTHYIEEA-RQAD 133
T+++ H + A R AD
Sbjct: 150 TVVMVLHDLNLAARYAD 166
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 64.9 bits (159), Expect = 9e-14
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RV +A L+ PD+++LDEP +GVDP ++ L L + TI++ T
Sbjct: 131 GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVT 189
Query: 124 H 124
H
Sbjct: 190 H 190
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 65.9 bits (161), Expect = 1e-13
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 16 EIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-------PGNQLCSTLSG 68
E LFE+ TI + F + + + ++ L P LSG
Sbjct: 115 EYQLFEQ-TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFE-----LSG 168
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GQ RRV++A L PD +V DEPT+G+DP + + L + +TII+ TH
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTH 223
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 65.5 bits (160), Expect = 1e-13
Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV+IA L P+IIVLDEPTSG+DP+ A K L L + + TIII+TH
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTH 195
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 64.8 bits (159), Expect = 1e-13
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV+IA L P +++ DEPTS +DP L + LA + T+II T
Sbjct: 135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVT 193
Query: 124 HYIEEARQ-AD 133
H + AR+ AD
Sbjct: 194 HEMGFAREVAD 204
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 65.0 bits (159), Expect = 2e-13
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 16 EIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCS--TLSGGQARR 73
E LFEE T+ + F + + + +++ ++ LP S LSGGQ RR
Sbjct: 95 EHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR 153
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQA 132
V+IA L P+++VLDEPT+G+DP + +L T ++ TH +E+ AR A
Sbjct: 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYA 213
Query: 133 D 133
D
Sbjct: 214 D 214
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 64.8 bits (158), Expect = 2e-13
Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCST---LS 67
F E LFE+ T+ F K + + V+ +L++DL + + + +S
Sbjct: 91 FQFPESQLFED-TVEREIIFGPKNFKMNLDEVKN--YAHRLLMDLGFSRDVMSQSPFQMS 147
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ R+++I L +PDIIVLDEPT+G+DP + L L + +TII+ +H +
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207
Query: 128 E-ARQAD 133
E AR AD
Sbjct: 208 EVARYAD 214
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 64.3 bits (157), Expect = 3e-13
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV+IA L P+ I+ DEPT+ +DP + L TII+ THY
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204
Query: 126 IEEARQAD 133
+EEA +AD
Sbjct: 205 MEEAVEAD 212
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 63.5 bits (155), Expect = 3e-13
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 7 ASMLGF-MPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCS 64
+G Q+ L+ + + ++F + +Y++P + + + +L +LDL +
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR 152
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LS GQ R IA LLH P+I+ LDEPT G+D + +L T+++T+H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
Query: 125 YI 126
Y+
Sbjct: 213 YM 214
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 63.3 bits (155), Expect = 3e-13
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV+IA L +P +++ DEPTS +DP L + LA + T+++ T
Sbjct: 134 AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVT 192
Query: 124 HYIEEARQA 132
H + AR+
Sbjct: 193 HEMGFAREV 201
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 64.1 bits (156), Expect = 5e-13
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSG 68
+ + Q ALF T+ E AF K+ +PR+ ++ + + L+LV ++ LSG
Sbjct: 44 INMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSG 103
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV++A L+ P I++LDEP S +D L L + T + TH EE
Sbjct: 104 GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEE 163
Query: 129 A 129
A
Sbjct: 164 A 164
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 63.4 bits (155), Expect = 7e-13
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+ + Q AL+ T+ E AF KL +P++ ++ +K++ +L L N+ LSG
Sbjct: 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSG 136
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW---KYLNRLAHTDKRTIIITTHY 125
GQ +RV++A L+ P + +LDEP S +D A + +L T I TH
Sbjct: 137 GQRQRVALARALVRKPKVFLLDEPLSNLD---AKLRVLMRSEIKKLHERLGTTTIYVTHD 193
Query: 126 IEEA 129
EA
Sbjct: 194 QVEA 197
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 63.3 bits (154), Expect = 8e-13
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIP----RSSVEAVIKDLQLVLDLPPGNQLCST 65
+G++P+ L+ + + E F + +Y + + VE +I+ + L P ++
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR---PEQHKKIGQ 133
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS G +RV +A L+H P +++LDEPT+G+DP + + DK TII++TH
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDK-TIILSTHI 191
Query: 126 IEE 128
++E
Sbjct: 192 MQE 194
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 62.5 bits (152), Expect = 8e-13
Identities = 28/66 (42%), Positives = 46/66 (69%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+A+RVSIA TL ++P++++LDEPTS +DP + + +L + T+I TH
Sbjct: 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191
Query: 126 IEEARQ 131
+E+A++
Sbjct: 192 MEQAKR 197
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 63.3 bits (155), Expect = 9e-13
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYN-------IPRSSVEAVIKDLQLVLDLPPGNQL 62
+G++PQ+ LF T+ + A + + + V ++ LD+ G +
Sbjct: 541 IGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERG 599
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
S LSGGQ + V++A LL P I++LDEPTS +D F L R +T+++
Sbjct: 600 RS-LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLV 656
Query: 123 TH 124
TH
Sbjct: 657 TH 658
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 62.2 bits (151), Expect = 1e-12
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 24 TISETFAFFSKLYNIPRSS-----VEAVIKDLQLVLDLPPG-NQLCSTLSGGQARRVSIA 77
+I + AF +++ + VE +K L ++ N+ + LSGGQ +R+ IA
Sbjct: 99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA-RQAD 133
L P++I+LDEPTS +DP+ K L L ++ TI+I TH I +A R AD
Sbjct: 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEEL--SENYTIVIVTHNIGQAIRIAD 213
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 60.0 bits (146), Expect = 1e-12
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGG 69
+G + Q+ LF E T+ E F + + E ++ + L L + TLSGG
Sbjct: 38 IGVVFQDPQLFPELTVRENLFFGLRDKEA-DARAEEALERVGLPDFL--DREPVGTLSGG 94
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTS 94
Q +RV+IA LL P +++LDEPT+
Sbjct: 95 QKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 61.8 bits (151), Expect = 2e-12
Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ +A L + P++++LDEPTS +DP+ + + L + TI+I TH
Sbjct: 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KEYTIVIVTHN 199
Query: 126 IEEA-RQAD 133
+++A R AD
Sbjct: 200 MQQAARVAD 208
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 61.9 bits (151), Expect = 2e-12
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 19/138 (13%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL------VLDLPPGNQ 61
+G + Q++ LF + T++E A Y P ++ E V + + +++LP G
Sbjct: 76 RQIGLVSQDVFLFND-TVAENIA-----YGRPGATREEVEEAARAANAHEFIMELPEGYD 129
Query: 62 LC-----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
LSGGQ +R++IA LL P I++LDE TS +D L RL
Sbjct: 130 TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM--KN 187
Query: 117 RTIIITTHYIEEARQADM 134
RT + H + AD
Sbjct: 188 RTTFVIAHRLSTIENADR 205
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 62.1 bits (151), Expect = 2e-12
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLH 82
T+ + AF + +PR + +++D L V L + + LSGGQ +RV+IA L
Sbjct: 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160
Query: 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
P II+LDE TS +DP K + +L + T+I TH I+EA AD
Sbjct: 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMAD 211
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 62.3 bits (152), Expect = 3e-12
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQA+R+++A LL +++LDEPT+ +D + L LA +T+++ T
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ--KTVLVIT 512
Query: 124 HYIEEARQAD 133
H +E+A AD
Sbjct: 513 HRLEDAADAD 522
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 62.0 bits (151), Expect = 3e-12
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +R++ A LL P ++ DEPTSG+D +A+ + L LA +TII T H
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA-QKGKTIICTIH 224
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 60.9 bits (149), Expect = 3e-12
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-----GNQLCS 64
+G++P+ +F E T+ E Y R+ +A ++ V +L P QL
Sbjct: 77 IGYVPEGRRIFPELTVEENLL--LGAYARRRAKRKARLER---VYELFPRLKERRKQLAG 131
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGG+ + ++IA L+ P +++LDEP+ G+ P + ++ + L TI++
Sbjct: 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG-VTILLVEQ 190
Query: 125 YIEEARQ-AD 133
A + AD
Sbjct: 191 NARFALEIAD 200
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 61.2 bits (149), Expect = 3e-12
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R+ IA L P++++LDEPTS +DP+ + + L K TI+I TH
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK--KKYTIVIVTH 201
Query: 125 YIEEAR 130
+++A
Sbjct: 202 NMQQAA 207
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 61.2 bits (149), Expect = 3e-12
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 40 RSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
+ A L+L+ ++ +LS G+ RRV IA L+ P++++LDEP G+D +
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 100 LAHYFWKYLNRLAHT-DKRTIIITTHYIEEA 129
L LA + ++ TH+ EE
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHHAEEI 236
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 61.0 bits (148), Expect = 4e-12
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA T+ PD+I++DEPTS +DP+ H + + L TI+I TH
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTHS 203
Query: 126 IEEARQ 131
+++AR+
Sbjct: 204 MQQARR 209
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 60.7 bits (148), Expect = 4e-12
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 10 LGFMPQEIALFEEFTISET------FAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLC 63
+G++PQE ++F + T+ + + ++A++++ + +
Sbjct: 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT---HLRDSKA 137
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
+LSGG+ RRV IA L +P I+LDEP +GVDP+
Sbjct: 138 YSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 173
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 61.3 bits (149), Expect = 6e-12
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG----- 59
+G + Q+ LF TI E A + +E +K + +LP G
Sbjct: 403 KRIGIVSQDPLLFSG-TIRENIALGRP--DATDEEIEEALKLANAHEFIANLPDGYDTIV 459
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGGQ +R++IA LL +P I++LDE TS +D L +L RT
Sbjct: 460 GERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL--LKGRTT 517
Query: 120 IITTHYIEEARQADM 134
+I H + + AD
Sbjct: 518 LIIAHRLSTIKNADR 532
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 60.5 bits (147), Expect = 6e-12
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV+IA L P++I+ DEPTS +DP L + +LA +KRT++I TH
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHE 203
Query: 126 IEEAR 130
+ AR
Sbjct: 204 MSFAR 208
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 61.1 bits (149), Expect = 7e-12
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 42 SVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLA 101
++EA ++ L L P ++ S+LSGG RRV++A LL PD+++LDEPT+ +D L
Sbjct: 130 TLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD--LE 187
Query: 102 HYFW--KYLNRLAHTDKRTIIITTH 124
W YL R T+I+ +H
Sbjct: 188 SIEWLEDYLKRY----PGTVIVVSH 208
Score = 45.7 bits (109), Expect = 1e-06
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 10 LGFMPQEIA-LFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQLVLDLPPGNQLCS--- 64
+G+ Q L + T+ S+ + + V A + G
Sbjct: 387 IGYFDQHRDELDPDKTV---LEELSEGFPDGDEQEVRAYLGRFGF-----TGEDQEKPVG 438
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPT 93
LSGG+ R+ +A LL P++++LDEPT
Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPT 467
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 60.5 bits (147), Expect = 8e-12
Identities = 48/129 (37%), Positives = 67/129 (51%), Gaps = 9/129 (6%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLV---LDLPPGNQLCST 65
L F E LFEE T+ + AF + + + + EA+ ++ L LV L N
Sbjct: 89 LVFQFPESQLFEE-TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPF--E 145
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ RRV+IA L P I+VLDEPT+G+DP +L H TI++ TH
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKL-HQSGMTIVLVTHL 204
Query: 126 IEE-ARQAD 133
+++ A AD
Sbjct: 205 MDDVANYAD 213
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 59.8 bits (145), Expect = 9e-12
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV IA L SP II+LDEPTS +DP+ A + L L D T+++ T
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTMLLVTRS 206
Query: 126 IEEA 129
+++A
Sbjct: 207 MQQA 210
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 60.4 bits (147), Expect = 1e-11
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 46 VIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW 105
+ L LD P G + LSGGQA+R+++A L +++LDEPT+ +D
Sbjct: 440 FVAALPQGLDTPIGEG-GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 106 KYLNRLAHTDKRTIIITTHYIEEARQAD 133
+ L LA RT+++ TH + A AD
Sbjct: 499 EALRALAQG--RTVLLVTHRLALAALAD 524
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 60.3 bits (147), Expect = 1e-11
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 15 QEIALFEEFTISETFAF---FSKLYNIPRSSVEAVIKDL--QLVLDLPPGNQLCSTLSGG 69
Q L T++E SK I R A IK+L + L + P + + LS G
Sbjct: 86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-DAKVADLSVG 144
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
+ +RV I L +++LDEPT+ + P A ++ L RLA K TII TH ++E
Sbjct: 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK-TIIFITHKLKEV 203
Query: 130 RQ 131
Sbjct: 204 MA 205
Score = 40.6 bits (96), Expect = 9e-05
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 10 LGFMPQE---IALFEEFTISETFAF-------FSKLYNIPRSSVEAVIKDLQLVLDLPPG 59
L ++P++ L + +++E FS+ + R ++ ++L D+
Sbjct: 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAP 395
Query: 60 N--QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ +LSGG +++ +A L PD+++ +PT G+D
Sbjct: 396 SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 59.3 bits (144), Expect = 1e-11
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
+L LSGGQ +RV++A L+ I++LDEP S +DP L +++L K T
Sbjct: 123 LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMT 182
Query: 119 IIITTHYIEEARQADMR 135
+++ TH+ E+A + R
Sbjct: 183 LLMVTHHPEDAARIADR 199
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 59.6 bits (144), Expect = 1e-11
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RVSIA L P++++ DEPTS +DP L + + +LA K T+++ TH
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHE 211
Query: 126 IEEARQ 131
+ AR
Sbjct: 212 MGFARH 217
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 59.5 bits (145), Expect = 1e-11
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R+ IA L P+++++DEPTS +DP+ + + L K TI+I TH
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTH 206
Query: 125 YIEEA-RQAD 133
+++A R +D
Sbjct: 207 NMQQAARVSD 216
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 59.3 bits (144), Expect = 1e-11
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
S LSGGQ +RV+IA L P +++ DEPTS +DP L H K + LA + T++I T
Sbjct: 135 SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA-EEGMTMVIVT 193
Query: 124 HYIEEARQADMR 135
H I A + R
Sbjct: 194 HEIGFAEKVASR 205
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 59.8 bits (145), Expect = 1e-11
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV+IA L +P +I+LDE TS +DP + ++ TII TH
Sbjct: 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
Query: 125 YIEEARQAD 133
+ EA +AD
Sbjct: 202 DLSEAMEAD 210
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 59.1 bits (144), Expect = 2e-11
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV+IA L +P +++ DEPTS +D + L +L T++ TH
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 59.6 bits (145), Expect = 2e-11
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAV-IKDLQLVLDLPPGNQLCSTLSGGQARR 73
Q AL T+ E AF ++ +PR+ E + L+LV ++ LSGG +R
Sbjct: 109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQR 168
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA---- 129
V +A L PDI+++DE S +DPL+ L RL ++TI+ TH ++EA
Sbjct: 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLG 228
Query: 130 -RQADMRE 136
R A M++
Sbjct: 229 DRIAIMKD 236
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 59.4 bits (144), Expect = 2e-11
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV+IA L P++++ DEPTS +DP L K + LA + RT+++ TH
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHE 211
Query: 126 IEEARQ 131
+ AR
Sbjct: 212 MGFARD 217
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 59.2 bits (144), Expect = 2e-11
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDLQLVLDLPP-GNQLCSTLSG 68
G + Q L T+ E AF +L +P++ ++ V + L+LV L ++ + LSG
Sbjct: 86 GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-GLSDKADRYPAQLSG 144
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GQ +RV+IA L ++P I++ DE TS +DP + L + TI++ TH +E
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 58.4 bits (142), Expect = 2e-11
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 10 LGFMPQEIALF-----EEFTISETFAFFSKLYNIPR-SSVEAVIKDLQLVLDLPPGNQLC 63
+G++PQ++ LF + T+ A ++ + V + LDL G +
Sbjct: 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ + V++A LL+ P I++LDEPTS +D + L +L +T+II T
Sbjct: 140 G-LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIIT 196
Query: 124 H 124
H
Sbjct: 197 H 197
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 59.0 bits (143), Expect = 2e-11
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +RV+IA + P ++VLDEPT+G+DP +LN L T T+I +TH
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197
Query: 126 IE 127
++
Sbjct: 198 LD 199
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 58.4 bits (142), Expect = 3e-11
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARR 73
Q ALF T+ E AF +L +P++ ++ + + L LV N+ S LSGGQ +R
Sbjct: 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQR 138
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V+IA L++ P +++LDEP +D L L RL T + TH EEA
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 58.5 bits (142), Expect = 3e-11
Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 10 LGFMPQEIALFEEFTISETFAFF--------SKLYNIPRSSVEAVIKDLQLVLDLPPGNQ 61
L F E LFEE TI + AF ++ N + ++ V D + D P
Sbjct: 87 LVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFE- 144
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
LSGGQ RRV+IA + P I++LDEPT+G+DP + L TII+
Sbjct: 145 ----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIIL 200
Query: 122 TTHYIEE-ARQAD 133
+H +E+ A+ AD
Sbjct: 201 VSHSMEDVAKLAD 213
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 57.6 bits (140), Expect = 4e-11
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 18 ALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVLDLPPGNQLCSTLSGGQARRVS 75
A+ T++E F++ + A ++ L + LP G LS GQ RRV+
Sbjct: 83 AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGY-----LSAGQKRRVA 137
Query: 76 IAVTLL-HSPDIIVLDEPTSGVDP----LLAHYFWKYLNRLAHTDKRTIIITTHY---IE 127
+A L+ + P I +LDEPT+ +D L A +L + +I TH +
Sbjct: 138 LARLLVSNRP-IWILDEPTAALDAAAVALFAELIRAHLAQGG-----IVIAATHIPLGLP 191
Query: 128 EARQADM 134
AR+ D+
Sbjct: 192 GARELDL 198
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 57.6 bits (139), Expect = 4e-11
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 15 QEIALFEEFTISETFAF----FSKLYNIPRSSVEAVIKDLQL--VLDLPPGNQLCSTLSG 68
QE LF T+ + KL + V + + + LD P LSG
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQ-----LSG 131
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV++A L+ I++LDEP S +DPLL + +L +RT+++ TH++ +
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191
Query: 129 AR 130
AR
Sbjct: 192 AR 193
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 58.5 bits (142), Expect = 4e-11
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDLQLVLDLPPGNQLCSTLSGGQARR 73
Q AL T+ E AF ++ +P++ E ++ L+LV ++ + LSGG +R
Sbjct: 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQR 172
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V +A L + PDI+++DE S +DPL+ L L K+TI+ TH ++EA
Sbjct: 173 VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEA 228
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 58.5 bits (142), Expect = 4e-11
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 39 PRSSVEAVIKDLQ------LVLDLPPGNQLC-----STLSGGQARRVSIAVTLLHSPDII 87
P +S E + LQ L+ P G LSGG+ RR+++A LLH +
Sbjct: 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 88 VLDEPTSGVDPLLAHYFWKYLNRL-AHTDKRTIIITTHYIEEARQAD 133
+LDEPT G+DP+ + L L H + +T+++ TH + + D
Sbjct: 497 LLDEPTEGLDPITER---QVLALLFEHAEGKTLLMVTHRLRGLERMD 540
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 58.5 bits (141), Expect = 5e-11
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSV-EAVIKDLQLVLDLPPGNQLCSTLSG 68
L + Q ALF + + AF + +P++ + E V L+LV L + LSG
Sbjct: 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSG 140
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL-AHTDKRTIIITTHYIE 127
G +R++IA + PD+++LDEP S +D + + + L + TI+ TH +
Sbjct: 141 GMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD 200
Query: 128 EA 129
+A
Sbjct: 201 DA 202
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 57.3 bits (139), Expect = 5e-11
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSS----VEAVIKDLQL--VLDLPPGNQLCSTLSG 68
Q AL+ T+ + AF KL +P+ V V + LQ+ +LD P LSG
Sbjct: 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSG 133
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV++ ++ P + ++DEP S +D L L RL T I TH E
Sbjct: 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE 193
Query: 129 A 129
A
Sbjct: 194 A 194
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 58.1 bits (141), Expect = 6e-11
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 38 IPRSS-VEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGV 96
+PR VE V + L+ V N+ LSGGQ +RV+IA L PDII+LDE TS +
Sbjct: 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 97 DPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
DP + + +L T++ TH ++EA QAD
Sbjct: 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQAD 208
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 58.1 bits (141), Expect = 6e-11
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA---VIKDLQLVLDLPPGNQLCSTLS 67
GF+ Q ALF T+++ AF K+ S E V + L+LV ++ + LS
Sbjct: 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLS 139
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +RV++A L P +++LDEP +D + ++L +L T + TH E
Sbjct: 140 GGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE 199
Query: 128 EAR 130
EA
Sbjct: 200 EAL 202
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 57.6 bits (140), Expect = 9e-11
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG +RV IA+ L +P +++ DEPT+ +D + L L +I+ TH
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 57.1 bits (138), Expect = 1e-10
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV+IA L P +++ DE TS +DP L + RLA T+++ T
Sbjct: 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT 204
Query: 124 HYIEEARQ 131
H + AR+
Sbjct: 205 HEMGFARE 212
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 57.0 bits (138), Expect = 1e-10
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ +R+ IA + PDI+++DEP S +DP+ + + L TIII TH
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL--KKNYTIIIVTH 220
Query: 125 YIEEARQA 132
+++A +A
Sbjct: 221 NMQQAARA 228
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 56.4 bits (136), Expect = 2e-10
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L PD+I++DEPTS +DP+ + + L +III TH
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL--KKDYSIIIVTHN 225
Query: 126 IEEA 129
+++A
Sbjct: 226 MQQA 229
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 55.4 bits (134), Expect = 2e-10
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 11/103 (10%)
Query: 39 PRSSVEAVIKDLQLVLDLPP-------GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDE 91
P S +E + L VL+ P N L SGG+ +R+++A LL I++LDE
Sbjct: 65 PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDE 124
Query: 92 PTSGVDPLLAHYFWKYLNRLA-HTDKRTIIITTHYIEEARQAD 133
PT G+DP+ + L+ + +T+I TH++ D
Sbjct: 125 PTVGLDPITER---QLLSLIFEVLKDKTLIWITHHLTGIEHMD 164
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 56.9 bits (138), Expect = 2e-10
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 54 LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP----LLAHYFWKYLN 109
L PP + + LSGG+ RRV++ LL PD+++LDEPT+ +D L + +Y
Sbjct: 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-- 207
Query: 110 RLAHTDKRTIIITTH 124
T++ TH
Sbjct: 208 ------PGTVVAVTH 216
Score = 35.3 bits (82), Expect = 0.006
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ LSGG+ RV +A TL ++++LDEPT+ +D
Sbjct: 439 KKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 56.5 bits (136), Expect = 2e-10
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +RV IA L PD+I+LDEPTS +DP+ + L L D+ TII+ TH
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENML--LELRDQYTIILVTH 205
Query: 125 YIEEA 129
+ +A
Sbjct: 206 SMHQA 210
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 56.1 bits (135), Expect = 2e-10
Identities = 26/64 (40%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L +PD++++DEPTS +DP+ + + +L +K TI+I TH
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL--KEKYTIVIVTHN 213
Query: 126 IEEA 129
+++A
Sbjct: 214 MQQA 217
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 56.6 bits (137), Expect = 2e-10
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSS----VEAVIKDLQL--VLDLPPGNQLC 63
+G + Q AL+ +++E +F KL + V V + LQL +LD P
Sbjct: 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP----- 131
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RV+I TL+ P + +LDEP S +D L ++RL RT+I T
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 124 HYIEEA 129
H EA
Sbjct: 192 HDQVEA 197
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 56.8 bits (138), Expect = 2e-10
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 15 QEIALFEEFTISETFAF----FSKLYNIPRSSVEAVIKDL--QLVLDLPPGNQLCSTLSG 68
QE++L +++E + I R ++ ++L +L LD+ P + L LS
Sbjct: 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDP-DTLVGDLSI 148
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
Q + V IA L +++LDEPT+ + + + RL II +H ++E
Sbjct: 149 AQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLDE 207
Query: 129 ARQ-AD 133
+ AD
Sbjct: 208 VFEIAD 213
Score = 50.6 bits (122), Expect = 3e-08
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 40 RSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
R+ E I+ L++ P Q TLSGG ++V +A L P +++LDEPT G+D
Sbjct: 378 RALAERYIRRLRI--KTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 56.5 bits (137), Expect = 3e-10
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVLDLPPGNQLCS 64
+G + Q ALF T+ E AF K+ + +A IK L+LV ++
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFGLKV---RKKLKKAEIKARVEEALELVGLEGFADRKPH 135
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV++A L+ P +++LDEP S +D L K L L T + TH
Sbjct: 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH 195
Query: 125 YIEEA-----RQADMRE 136
EEA R A M +
Sbjct: 196 DQEEALAMSDRIAVMND 212
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 56.2 bits (136), Expect = 3e-10
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 25 ISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-NQLCSTLSGGQARRVSIAVTLLHS 83
++ +Y IP + L +LDL LS GQ R +A LLH
Sbjct: 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHP 174
Query: 84 PDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
P ++ LDEPT G+D ++L + T+++TTH
Sbjct: 175 PKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 56.3 bits (135), Expect = 3e-10
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLV-LDLPPGNQLCSTLSGG 69
F E LFEE T+ + AF + + IP+ E + + L++V L + LSGG
Sbjct: 90 FQFPESQLFEE-TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGG 148
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
Q RRV+IA L P+++VLDEPT+G+DP + + H +T+++ TH +++
Sbjct: 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI-HQSGQTVVLVTHLMDD 206
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 55.9 bits (135), Expect = 3e-10
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P+++++DEPTS +DP+ + + L TI+I TH
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHN 204
Query: 126 IEEA 129
+++A
Sbjct: 205 MQQA 208
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 55.2 bits (133), Expect = 3e-10
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +RV++A L+ +++LDEP + +DP L + L K T+++ TH
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
Query: 125 YIEEARQADMR 135
E+A++ R
Sbjct: 188 QPEDAKRLAQR 198
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 55.6 bits (134), Expect = 3e-10
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-- 117
Q +LSGGQ +R+ IA + P++I++DEP S +DP+ + L H K
Sbjct: 146 KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST----LRIEELMHELKEQY 201
Query: 118 TIIITTHYIEEA-RQADM 134
TIII TH +++A R +DM
Sbjct: 202 TIIIVTHNMQQAARVSDM 219
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 56.0 bits (135), Expect = 4e-10
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ RRV+IA L P+I++ DEPT+G+DP H + L A + +T+ + TH
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVFVITHT 235
Query: 126 IE 127
+E
Sbjct: 236 ME 237
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 55.3 bits (134), Expect = 4e-10
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R++IA L+ P +++LDEPTS +D + L L T + +H
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 55.3 bits (134), Expect = 4e-10
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 33/144 (22%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI----PRSSVEAVIKDLQ------LVLDLP 57
+G +PQ+ LF + TI YNI P ++ E VI+ + ++ P
Sbjct: 75 RAIGVVPQDTVLFND-TI---------GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFP 124
Query: 58 PGNQLCST--------LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
G T LSGG+ +RV+IA +L +P I++LDE TS +D L
Sbjct: 125 DGY---DTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALR 181
Query: 110 RLAHTDKRTIIITTHYIEEARQAD 133
++ RT I+ H + AD
Sbjct: 182 DVS--KGRTTIVIAHRLSTIVNAD 203
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 55.8 bits (135), Expect = 4e-10
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNI--PRSSVEAVIKDLQLVLDLP-PGNQLCSTLS 67
G + Q ALF T+++ A+ L N R+ V + +L ++ LP + LS
Sbjct: 79 GIVFQSYALFPNLTVADNIAY--GLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLS 136
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +RV++A L SP +++LDEP S +D + + + +L T I+ TH E
Sbjct: 137 GGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196
Query: 128 EA 129
EA
Sbjct: 197 EA 198
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 55.0 bits (133), Expect = 5e-10
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-----LQLVLDLPPGNQLCST 65
GF+ Q ALF T+ + AF ++ EA I+ L+LV ++ +
Sbjct: 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ 136
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV++A L P +++LDEP +D + ++L RL T + TH
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
Query: 126 IEEA 129
EEA
Sbjct: 197 QEEA 200
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 55.2 bits (133), Expect = 5e-10
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCST---- 65
L F E LFE T+ + F K N S EA K L+ + + L S
Sbjct: 89 LVFQFPEAQLFEN-TVLKDVEFGPK--NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFE 145
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL----LAHYFWKYLNRLAHTDKRTIII 121
LSGGQ RRV+IA + + P+I+ LDEP +G+DP + F Y + H T+I+
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGH----TVIL 200
Query: 122 TTHYIEE-ARQAD 133
TH +++ A AD
Sbjct: 201 VTHNMDDVAEYAD 213
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 55.6 bits (135), Expect = 5e-10
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 47 IKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWK 106
+ L LD P G+Q + LS GQA+R+++A LL +++LDEPT+ +D +
Sbjct: 468 LPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ 526
Query: 107 YLNRLAHTDKRTIIITTHYIEEARQAD 133
LN + ++T ++ TH +E+ Q D
Sbjct: 527 ALNAASR--RQTTLMVTHQLEDLAQWD 551
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 54.7 bits (132), Expect = 5e-10
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGG 69
+G + + L+E T E + L +P S ++ V+ + L G + S G
Sbjct: 72 IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT---GKKKAKQFSLG 128
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
+R+ IA+ LL+ P +++LDEPT+G+DP+ + L R T+I+++H + E
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE-LIRSFPEQGITVILSSHILSEV 187
Query: 130 RQ-AD 133
+Q AD
Sbjct: 188 QQLAD 192
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 54.5 bits (132), Expect = 6e-10
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 18 ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIA 77
+ T E ++L I + ++ V+ + L + S G +R+ IA
Sbjct: 82 GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS---AKKKVKGFSLGMKQRLGIA 138
Query: 78 VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
+ LL +PD+++LDEPT+G+DP + + L T++I++H + E ++
Sbjct: 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGI-TVLISSHLLSEIQK 191
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 54.5 bits (132), Expect = 6e-10
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDL-------PPGNQLCSTLS 67
Q L T+ E A ++ +P++ +E + +L ++ L P + LS
Sbjct: 89 QHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP------AQLS 142
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR---TIIITTH 124
GGQ +RV IA L ++P +++ DE TS +DP L L ++ TI++ TH
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQ---SILALLRDINRELGLTIVLITH 199
Query: 125 YIEEARQ 131
+E ++
Sbjct: 200 EMEVVKR 206
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 54.5 bits (132), Expect = 6e-10
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ---LVLDLPPG----- 59
SM+G + Q+ LF TI E N V K+ ++ LP G
Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVL 133
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LS G+ + ++IA +L P I++LDE TS +D + L +L RT
Sbjct: 134 GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMK--GRTS 191
Query: 120 IITTHYIEEARQAD 133
II H + + AD
Sbjct: 192 IIIAHRLSTIKNAD 205
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 55.0 bits (133), Expect = 7e-10
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VLDLPPGNQLCSTLS 67
+G++ Q+ LF +T+ + R+ + ++ L + +LD P TLS
Sbjct: 78 IGYVFQDARLFPHYTVRGNLRYGMW--KSMRAQFDQLVALLGIEHLLDRYP-----GTLS 130
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GG+ +RV+I LL +P+++++DEP + +D YL RL I+ +H ++
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 128 E-ARQAD 133
E R AD
Sbjct: 191 EVLRLAD 197
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 54.6 bits (131), Expect = 7e-10
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+Q STLSGGQ +RV+IA L+ +I+ DEP + +DP A L + D T+
Sbjct: 147 HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206
Query: 120 IITTHYIEEA 129
++T H ++ A
Sbjct: 207 VVTLHQVDYA 216
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 55.4 bits (133), Expect = 8e-10
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
S LSGGQ +R+SIA ++ +P I++LDE TS +D + K +N L + R II
Sbjct: 578 SKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637
Query: 124 HYIEEARQAD 133
H + R A+
Sbjct: 638 HRLSTIRYAN 647
Score = 49.6 bits (118), Expect = 7e-08
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R++IA LL P I++LDE TS +D K + + +TII H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
Query: 125 YIEEARQAD 133
I +++D
Sbjct: 1418 RIASIKRSD 1426
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 54.2 bits (131), Expect = 8e-10
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
GN+ +SGG+ +RVSIA L+ ++ D T G+D A K + +A K T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 119 IIIT 122
++
Sbjct: 172 TFVS 175
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.2 bits (130), Expect = 1e-09
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA T+ SP++I++DEP S +DP+ +++L + TI+I TH
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTHN 204
Query: 126 IEEA 129
+++A
Sbjct: 205 MQQA 208
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 54.5 bits (131), Expect = 1e-09
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS GQ +RV+IA L+ P ++VLDEPT+G+DP+ K L + TIII TH
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 126 IE 127
I+
Sbjct: 202 ID 203
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 54.7 bits (132), Expect = 1e-09
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGG+ +R+++A LL I++LDEPT +D A + L LA RT+++ T
Sbjct: 470 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLIT 527
Query: 124 H 124
H
Sbjct: 528 H 528
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 53.8 bits (130), Expect = 1e-09
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-- 117
L S LSGG+ +RV+IA +++ P +++ DEPT +DP L+ W+ + ++
Sbjct: 132 RALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS---WEIMRLFEEINRLGT 188
Query: 118 TIIITTH 124
T+++ TH
Sbjct: 189 TVLMATH 195
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 53.7 bits (130), Expect = 1e-09
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
++ LS GQ RR+ IA L P +++LDEP +G++P + + L TI
Sbjct: 144 DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTI 203
Query: 120 IITTH 124
++ H
Sbjct: 204 LLIEH 208
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 53.4 bits (129), Expect = 1e-09
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 22 EFTISETFAFFSKLYN-IPRSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAV 78
E T E F+ + + +++ + + L + DLP LS GQ RRV++A
Sbjct: 89 ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALAR 143
Query: 79 TLLHSPDIIVLDEPTSGVDP----LLAHYFWKYLNRLAHTDKRTIII-TTH 124
L + +LDEP + +D LL AH + I++ TTH
Sbjct: 144 LWLSPAPLWILDEPFTALDKEGVALLTALM------AAHAAQGGIVLLTTH 188
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 53.9 bits (129), Expect = 2e-09
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 38 IPRSS----VEAVIKDLQL---VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLD 90
+ RS VE+ +K + L V D N + LSGGQ +R+ IA T+ P++I++D
Sbjct: 116 VNRSEADEIVESSLKRVALWDEVKDRLKSNAM--ELSGGQQQRLCIARTIAVKPEVILMD 173
Query: 91 EPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
EP S +DP+ + + L +K TIII TH +++A
Sbjct: 174 EPASALDPISTLKIEELIEEL--KEKYTIIIVTHNMQQA 210
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 53.6 bits (129), Expect = 2e-09
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA T+ P++I++DEP S +DP+ + ++ L TI+I TH
Sbjct: 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN--FTIVIVTH 211
Query: 125 YIEEA-RQADM 134
+++A R +DM
Sbjct: 212 NMQQAVRVSDM 222
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 53.9 bits (129), Expect = 2e-09
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
L LSGGQ +R+ IA L P+I++ DEPTS +DP+ + ++ L +K TI+
Sbjct: 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL--KNKVTIL 214
Query: 121 ITTHYIEEA 129
I TH +++A
Sbjct: 215 IVTHNMQQA 223
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 53.9 bits (130), Expect = 2e-09
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 11 GFMPQEIALFEEFTISETFAF-FSKLYNIPRSSVEAVIKDLQLVLDLPP----GNQLCST 65
GF+ Q ALF T+ + AF + L R + A+ + +L++ ++ +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ 136
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV++A L P I++LDEP +D + ++L +L K T + TH
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196
Query: 126 IEEA 129
EEA
Sbjct: 197 QEEA 200
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 53.6 bits (129), Expect = 2e-09
Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LS GQ +RV+IA L PD+IVLDEP + +DP + L+RL H +T+I+ TH
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVATH 196
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 53.6 bits (130), Expect = 2e-09
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 54 LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPT 93
L PP + + LSGG+ RRV++ LL PD+++LDEPT
Sbjct: 152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPT 191
Score = 32.8 bits (76), Expect = 0.043
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ LSGG+ R+ +A TL ++++LDEPT+ +D
Sbjct: 441 KKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 53.6 bits (129), Expect = 3e-09
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIP--RSSVEAVIKDLQL--VLDLPPGNQLCST 65
+G++ QE LF ++ + K R S E VI+ L + +L PG
Sbjct: 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG-----R 131
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +RV+I LL SP ++++DEP + +D + YL RL I+ +H
Sbjct: 132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191
Query: 126 IEE-ARQAD 133
++E R AD
Sbjct: 192 LQEVLRLAD 200
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 53.6 bits (129), Expect = 3e-09
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
S++SGGQ +R+++A LL +++LDE TS +D + K +N L + +TII
Sbjct: 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQDKTIIFVA 666
Query: 124 HYIEEARQAD 133
H + A+Q+D
Sbjct: 667 HRLSVAKQSD 676
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 52.9 bits (127), Expect = 3e-09
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV+IA L+ P +++ DEPT+ +DP + + LA T T +I TH
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGI-TQVIVTHE 200
Query: 126 IEEARQ 131
+E AR+
Sbjct: 201 VEVARK 206
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 52.7 bits (126), Expect = 4e-09
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCS--TLS 67
L F E LF+E TI + AF + + +L ++ LP S LS
Sbjct: 94 LVFQFPEYQLFQE-TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELS 152
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ RRV++A + + +VLDEPT G+DP F RL K+ II+ TH ++
Sbjct: 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212
Query: 128 EA-RQAD 133
+ R AD
Sbjct: 213 QVLRIAD 219
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 52.5 bits (126), Expect = 4e-09
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL------VLDLPPG-NQL 62
+G + QE LF +I + A P S+E VI+ +L + +LP G + +
Sbjct: 78 VGVVLQENVLFNR-SIRDNIALAD-----PGMSMERVIEAAKLAGAHDFISELPEGYDTI 131
Query: 63 C----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
+ LSGGQ +R++IA L+H+P I++ DE TS +D H + ++ + RT
Sbjct: 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRT 189
Query: 119 IIITTHYIEEARQAD 133
+II H + + AD
Sbjct: 190 VIIIAHRLSTVKNAD 204
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 52.3 bits (126), Expect = 4e-09
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARR 73
Q+ L + T+ E A ++ ++ + + L + LSGG+ +R
Sbjct: 86 QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
V+IA +++SP +++ DEPT +DP L+ L RL + T+I+ TH + +
Sbjct: 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDR 202
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 52.0 bits (125), Expect = 4e-09
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSG 68
+G + Q+ L + + E AF ++ +P + + ++ L L + LSG
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSG 139
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR--TIIITTH 124
G+ +RV+IA +++SP I++ DEPT +DP W+ +N L +K T+++ TH
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDP---DTTWEIMNLLKKINKAGTTVVVATH 194
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 52.3 bits (126), Expect = 4e-09
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV+IA L+H P +++ DEPT+ +D + + +LA TI+I TH
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 52.5 bits (126), Expect = 4e-09
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA TL +P++I++DEP S +DP+ + L + T+II TH
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK--KEYTVIIVTH 206
Query: 125 YIEEARQA 132
+++A +
Sbjct: 207 NMQQAARV 214
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 52.4 bits (125), Expect = 5e-09
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ + + +A TL +P++++LDEPTS +DP +++ LA D+ T+II TH
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA--DRLTVIIVTHN 221
Query: 126 IEEARQADMR 135
+ +A + R
Sbjct: 222 LAQAARISDR 231
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 52.3 bits (125), Expect = 5e-09
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA TL P++I++DEPTS +DP+ + + L + TIII TH
Sbjct: 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL--KESYTIIIVTH 207
Query: 125 YIEEA 129
+++A
Sbjct: 208 NMQQA 212
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 51.9 bits (125), Expect = 6e-09
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV+IA L+ P +++ DEPT+ +DP + + LA T T +I TH
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHE 200
Query: 126 IEEARQA 132
+E AR+
Sbjct: 201 VEVARKT 207
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 51.8 bits (125), Expect = 6e-09
Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG-NQLC 63
S +G + QE LF+ TI+E + + VE K ++ LP G + L
Sbjct: 77 SQIGLVSQEPVLFDG-TIAENIRY--GKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133
Query: 64 ----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
S LSGGQ +R++IA LL +P I++LDE TS +D + L+R RT
Sbjct: 134 GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTT 191
Query: 120 IITTHYIEEARQAD 133
I+ H + R AD
Sbjct: 192 IVIAHRLSTIRNAD 205
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 51.5 bits (124), Expect = 6e-09
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LS Q +R++I V L P I+ LDEPTSG+D A+ ++L +LA + + I+ T H
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG-QAILCTIH 166
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 52.1 bits (125), Expect = 7e-09
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA + P++I++DEP S +DP+ + LA ++ T++I TH
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA--EEYTVVIVTHN 238
Query: 126 IEEA 129
+++A
Sbjct: 239 MQQA 242
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 50.6 bits (122), Expect = 8e-09
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 56 LPPGN---QLC----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYL 108
LP G QL LSGG+ +R++ A LLH P + LDE TS +D +
Sbjct: 75 LPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLY--- 131
Query: 109 NRLAHTDKRTIIITTH 124
+L T+I H
Sbjct: 132 -QLLKELGITVISVGH 146
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 51.8 bits (125), Expect = 1e-08
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP-----LLAHYFWKYLNRLAHTDKRTII 120
LSGG +RV IA+ L P +++ DEPT+ +D +L L L ++
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-----LKDLQRELGMAVL 209
Query: 121 ITTHYIEEARQ-AD 133
TH + + AD
Sbjct: 210 FITHDLGVVAELAD 223
Score = 49.1 bits (118), Expect = 9e-08
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 44 EAVIKDLQLVLDLPPG--NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLA 101
V + L+LV LPP ++ LSGGQ +RV+IA L P +++LDEP S +D +
Sbjct: 407 ARVAELLELV-GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465
Query: 102 HYFWKYLNRLAHTDKRTIIITTH 124
L L T + +H
Sbjct: 466 AQVLNLLKDLQEELGLTYLFISH 488
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 52.0 bits (125), Expect = 1e-08
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 9/95 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDL-QLVLDLPPGNQLC---- 63
+G++PQ++ LF T++E A F + + P +EA + + +L+L LP G
Sbjct: 394 IGYLPQDVELFPG-TVAENIARFGENAD-PEKIIEAAKLAGVHELILRLPDGYDTVIGPG 451
Query: 64 -STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+TLSGGQ +R+++A L P ++VLDEP S +D
Sbjct: 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 51.5 bits (123), Expect = 1e-08
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA T+ PD+I++DEPTS +DP+ + L + TI+I TH
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK--KEYTIVIVTHN 205
Query: 126 IEEA 129
+++A
Sbjct: 206 MQQA 209
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 51.2 bits (123), Expect = 1e-08
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R+ IA + P++++LDEPTS +DP+ + + L K TI+I TH
Sbjct: 168 GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL--KSKYTIVIVTH 225
Query: 125 YIEEA 129
+++A
Sbjct: 226 NMQQA 230
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 51.4 bits (123), Expect = 1e-08
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 20/127 (15%)
Query: 20 FEEFTISETFAFFSKLYNIPRSSVE------------AVIKDLQLVLDLPPGNQLCSTLS 67
F TI + A KL + +S E A+ +++ L+ P N LS
Sbjct: 97 FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN-----LS 151
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY-I 126
GGQ +R+ IA L P I+++DEPT+ +DP+ + L L + TI++ TH
Sbjct: 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVTHSPA 209
Query: 127 EEARQAD 133
+ AR +D
Sbjct: 210 QAARVSD 216
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 51.1 bits (122), Expect = 1e-08
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ + V++A L P+ ++ DE TS +DP + + +L H +TI+ TH
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITH 194
Query: 125 YIEEARQAD 133
+EE AD
Sbjct: 195 NLEELHDAD 203
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 50.3 bits (121), Expect = 1e-08
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR--TIIITT 123
LSGGQ +R+ +A L +P I+VLDEP S +D +A T I+
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER---ALNQAIAALKAAGATRIVIA 153
Query: 124 HYIEEARQADM 134
H E AD
Sbjct: 154 HRPETLASADR 164
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 51.4 bits (123), Expect = 1e-08
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQ-LCSTLSG 68
+G + Q L T+ A +L N P+ ++ + +L ++ L + S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GQ +RV+IA L +P +++ DE TS +DP + L + TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 49.7 bits (120), Expect = 2e-08
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS G+ + V IA L + +++LDEPT+ + P +K + RL +I +H
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR-AQGVAVIFISHR 141
Query: 126 IEEARQ-AD 133
++E + AD
Sbjct: 142 LDEVFEIAD 150
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 51.3 bits (123), Expect = 2e-08
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 48 KDLQLVLDL----PPGNQ-LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH 102
D Q V+D PG++ +LSGG ++V I LL P+I++LDEPT G+D
Sbjct: 369 SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKF 428
Query: 103 YFWKYLNRLAHTDKRTIIITT 123
++ + LA DK III++
Sbjct: 429 EIYQLIAELAKKDKGIIIISS 449
Score = 31.6 bits (72), Expect = 0.11
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 12/98 (12%)
Query: 33 SKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP 92
K+Y +A+ +L + D+ P ++ +TLS Q + + IA ++ I+++DEP
Sbjct: 109 DKMYR----DTKAIFDELDI--DIDPRAKV-ATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161
Query: 93 TSGVDPLLAHYFWKYLNRLAHTDKR--TIIITTHYIEE 128
TS + ++ + + +L +R I+ +H +EE
Sbjct: 162 TSSLTEKEVNHLFTIIRKL---KERGCGIVYISHKMEE 196
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 50.5 bits (122), Expect = 2e-08
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
++ LS GQ RR+ IA L P +++LDEP +G++P + + L T+
Sbjct: 138 DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITV 196
Query: 120 IITTH 124
++ H
Sbjct: 197 LLVEH 201
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 49.4 bits (119), Expect = 2e-08
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 12/63 (19%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD----PLLAHYFWKYLNRLAHTDKRTIII 121
LSGG+ R+++A LL +P++++LDEPT+ +D L +Y T+I+
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--------PGTVIL 122
Query: 122 TTH 124
+H
Sbjct: 123 VSH 125
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 50.8 bits (121), Expect = 2e-08
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P +++LDEPTS +DP+ + + L L+H ++I+ TH
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN--LSMIMVTHN 200
Query: 126 IEEARQ 131
+++ ++
Sbjct: 201 MQQGKR 206
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 51.1 bits (123), Expect = 2e-08
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 30/141 (21%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ------LVLDLPPGNQLC- 63
G++PQ++ LF+ TI+E A F + E VI+ + L+L LP G
Sbjct: 413 GYLPQDVELFDG-TIAENIARFG-----EEADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 64 ----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL----LAHYFWKYLNRLAHTD 115
+TLSGGQ +R+++A L P ++VLDEP S +D LA +
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALA-------AAILAAK 519
Query: 116 KR--TIIITTHYIEEARQADM 134
R T+++ H D
Sbjct: 520 ARGGTVVVIAHRPSALASVDK 540
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 50.8 bits (121), Expect = 2e-08
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSS-VEAVIKDLQLVLDLPPGNQLCSTLSGGQARR 73
Q AL T+ + AF +L I E + L+ V + LSGG +R
Sbjct: 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQR 172
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V +A L +PDI+++DE S +DPL+ L +L +RTI+ +H ++EA
Sbjct: 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEA 228
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 50.2 bits (121), Expect = 2e-08
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-----NQLCS 64
+ ++P+ +F T+ E L R EA +DL+ V +L P NQ
Sbjct: 80 IAYVPEGRRIFPRLTVEENL----LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAG 135
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGG+ + ++IA L+ P +++LDEP+ G+ P + ++ + L TI++
Sbjct: 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195
Query: 125 YIEEARQ-AD 133
A + AD
Sbjct: 196 NARFALEIAD 205
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 50.6 bits (122), Expect = 3e-08
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD-P----LLAHYFWKYLNRLAHTDKRT 118
+LSGG+ +RV+I LL +P+++++DEP + +D P LL YL RLA
Sbjct: 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-----YLERLAREINIP 181
Query: 119 IIITTHYIEEA-RQAD 133
I+ +H ++E R AD
Sbjct: 182 ILYVSHSLDEILRLAD 197
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 50.0 bits (120), Expect = 3e-08
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R IA+ L D ++LDEP + +D + K L RLA +TI++ H
Sbjct: 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH 194
Query: 125 YIEEA 129
I A
Sbjct: 195 DINFA 199
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 50.0 bits (120), Expect = 3e-08
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+Q +LSGGQ +R+ IA + P++++LDEP S +DP+ + + L T+
Sbjct: 151 HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTV 208
Query: 120 IITTHYIEEA-RQAD 133
+I TH +++A R +D
Sbjct: 209 VIVTHNMQQAARCSD 223
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.0 bits (119), Expect = 4e-08
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR--TIIITT 123
LSGGQ +R+ IA + SP ++++DEP S +DP+ + L H K+ TI+I T
Sbjct: 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPIST----AKVEELIHELKKDYTIVIVT 202
Query: 124 HYIEEA 129
H +++A
Sbjct: 203 HNMQQA 208
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 49.8 bits (119), Expect = 4e-08
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIP-RSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARR 73
Q AL + + AF +L I E + L LV ++ LSGG +R
Sbjct: 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V IA L P +++LDEP +D L + L L + +++ TH IEEA
Sbjct: 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA 196
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 49.6 bits (118), Expect = 4e-08
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLD---LPPGNQL-----CSTLSGGQARRVS 75
T+ E F S +N R +AV L D LP G+Q LSGGQ +R+
Sbjct: 94 TVEENITFGSP-FNKQR--YKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150
Query: 76 IAVTLLHSPDIIVLDEPTSGVDPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
+A L + +I+ LD+P S +D L+ H + + + DKRT+++ TH ++ AD
Sbjct: 151 VARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHAD 209
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 49.6 bits (118), Expect = 4e-08
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGGQ +R+ IA L P +++LDEPTS +DP+ + + L L H + T I+ TH
Sbjct: 148 FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHN 205
Query: 126 IEEA 129
+++A
Sbjct: 206 LQQA 209
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 49.6 bits (118), Expect = 4e-08
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA TL P II+ DEPTS +DP+ + L TI+I TH
Sbjct: 154 SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYTIVIVTH 211
Query: 125 YIEEA 129
+++A
Sbjct: 212 NMQQA 216
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 49.9 bits (120), Expect = 5e-08
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQARR 73
Q ALF T+ E AF ++ P + + + + L++V + LSGGQ +R
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQR 152
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
V+IA +++ P +++LDE S +D L L L T + TH EEA
Sbjct: 153 VAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA 208
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 49.8 bits (119), Expect = 5e-08
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSV-EAVIKDLQLV-----LDLPPGNQLCSTLSG 68
Q+ AL T+ E AF ++ +P++ + V + L+LV D PG LSG
Sbjct: 113 QQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGE-----LSG 167
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G +RV +A I+++DEP S +DPL+ L L K+TI+ +H ++E
Sbjct: 168 GMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDE 227
Query: 129 A 129
A
Sbjct: 228 A 228
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 49.1 bits (117), Expect = 6e-08
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +R+++ L P I++LDE TS +D + ++R ++ TH
Sbjct: 134 LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193
Query: 126 IEEA-RQADMR 135
++A R AD
Sbjct: 194 KDQAIRHADKV 204
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 49.2 bits (117), Expect = 8e-08
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA TL P +++LDEP S +DP+ + + L ++ +III TH
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL--KEEYSIIIVTH 221
Query: 125 YIEEA 129
+++A
Sbjct: 222 NMQQA 226
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 48.5 bits (116), Expect = 9e-08
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLC---STL 66
LGF+ Q L +FT E A + S EA + +++ + +++ S L
Sbjct: 85 LGFIYQFHHLLPDFTALENVAMPLLIGKK--SVKEAKERAYEMLEKVGLEHRINHRPSEL 142
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGG+ +RV+IA L++ P +++ DEPT +D A + + L + ++ TH +
Sbjct: 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202
Query: 127 EEARQAD 133
E A++ D
Sbjct: 203 ELAKKLD 209
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 48.6 bits (116), Expect = 9e-08
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR--TIIITT 123
LSGGQ +R+ IA L P+++++DEP S +DP+ + + L H K TIII T
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT----QKIEELIHELKARYTIIIVT 205
Query: 124 HYIEEA 129
H +++A
Sbjct: 206 HNMQQA 211
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 48.9 bits (116), Expect = 1e-07
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLD-LPPGNQLCSTLSGGQARRVSIAVTLLH 82
T+ + AF + IPR + + + L ++ L + + LSGGQ +RV++A +
Sbjct: 98 TVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157
Query: 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
P+II+LDE TS +DP + ++ + + T++ TH ++EA +D
Sbjct: 158 RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSD 208
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 48.6 bits (116), Expect = 1e-07
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 8 SMLGFMPQEIALFEEFTISETFAF-FSKLYNIP----RSSV----EAVIKDLQLVLDLPP 58
SML F Q ALF + + + A+ + +P S+V EAV L+ L P
Sbjct: 87 SML-F--QSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV--GLRGAAKLMP 141
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
S LSGG ARR ++A + PD+I+ DEP G DP+ K ++ L T
Sbjct: 142 -----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 119 IIITTHYIEE 128
++ +H + E
Sbjct: 197 CVVVSHDVPE 206
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 48.7 bits (116), Expect = 1e-07
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ +A TL P+I++LDEPTS +DP + L + TI+I TH
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS--YTIMIVTHN 240
Query: 126 IEEA 129
+++A
Sbjct: 241 MQQA 244
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 48.6 bits (116), Expect = 1e-07
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEAVIKDLQL--VLDLPPGNQLCSTL 66
+G++PQ++ L + T+ T F +L + + +K +Q ++D P L
Sbjct: 69 IGYVPQKLYL--DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAP-----MQKL 121
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGG+ +RV +A LL+ P ++VLDEPT GVD
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 48.7 bits (116), Expect = 1e-07
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P++I++DEP S +DP+ + LA ++ T+++ TH
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA--EEYTVVVVTHN 258
Query: 126 IEEA 129
+++A
Sbjct: 259 MQQA 262
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 48.4 bits (115), Expect = 1e-07
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 10 LGFMPQEIALFEEFTISETF-AFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLS 67
+G++PQE ++F ++ + A ++ E +L + + + +LS
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLS 139
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
GG+ RRV IA L +P I+LDEP +GVDP+
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVDPI 171
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 48.6 bits (116), Expect = 1e-07
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+SIA LL + +I++LD+ S VD H L + RT+II+ H
Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHR 509
Query: 126 IEEARQAD 133
+ +A
Sbjct: 510 LSALTEAS 517
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 48.2 bits (115), Expect = 2e-07
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 24 TISETFAFFSKLYNIPRSS-VEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLH 82
T+ + AF + IP E V + L+LV + + LSGGQ +RV+IA +
Sbjct: 98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAM 157
Query: 83 SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
P II+LDE TS +DP K + + + T+I TH ++E +D
Sbjct: 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSD 208
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 48.6 bits (115), Expect = 2e-07
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R+ IA + P+++++DEPTS +DP+ + + L K +III T
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL--KKKYSIIIVT 281
Query: 124 HYIEEARQ 131
H + +A++
Sbjct: 282 HSMAQAQR 289
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.2 bits (115), Expect = 2e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 54 LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH 113
LD P G LSGGQ +R+ IA + PD++++DEP S +DP+ +N L
Sbjct: 142 LDKPGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-- 194
Query: 114 TDKRTIIITTHYIEEA-RQAD 133
TI+I TH +++A R +D
Sbjct: 195 KQDYTIVIVTHNMQQAARVSD 215
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 48.1 bits (114), Expect = 2e-07
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +R+ IA + PD++++DEP S +DP+ + L ++ TII+ T
Sbjct: 160 TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL--KEQYTIIMVT 217
Query: 124 HYIEEA-RQAD 133
H +++A R AD
Sbjct: 218 HNMQQASRVAD 228
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 48.0 bits (115), Expect = 2e-07
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ +R+ IA L +P +IV DEP S +D
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALD 141
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 47.8 bits (114), Expect = 2e-07
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 30 AFFSKLYNIPRSSVEAVIKDLQLVLDLP-PGNQLCSTLSGGQARRVSIAVTLLHSPDIIV 88
AF +L + + + + + L + LSGGQ +RV IA L +P +++
Sbjct: 92 AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 89 LDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
LDEP +D L +L + +++ TH IEEA
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 48.2 bits (115), Expect = 2e-07
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 39 PRSSVEAVIKDLQL------VLDLPPGNQL-----CSTLSGGQARRVSIAVTLLHSPDII 87
P + E VI +L + +LP G + LSGGQ +R++IA L+ +P I+
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 88 VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
+ DE TS +D + + + RT+II H + R D
Sbjct: 616 IFDEATSALDYESEALIMRNMREI--CRGRTVIIIAHRLSTVRACD 659
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 48.2 bits (115), Expect = 2e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR--TIII 121
S LSGGQ +RVSIA L++ +I+ DEPT +D +H + + L R T+II
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALD---SHSGEEVMAILHQLRDRGHTVII 199
Query: 122 TTHYIEEARQAD 133
TH + A QA+
Sbjct: 200 VTHDPQVAAQAE 211
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 47.9 bits (114), Expect = 2e-07
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 13 MPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPGNQLCSTLSGGQA 71
M Q ALF T+ + AF K +P++ + + + + L LV + LSGGQ
Sbjct: 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQR 155
Query: 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLL----AHYFWKYLNRLAHTDKRTIIITTHYIE 127
+RV++A +L P +++LDEP +D L L R+ T ++ TH E
Sbjct: 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG----VTCVMVTHDQE 211
Query: 128 EA 129
EA
Sbjct: 212 EA 213
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 47.9 bits (115), Expect = 2e-07
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP--------LLAHYFWKYLNRLAHTDKR 117
LSGG+ RR+ IA LLH +++LDEPT G+D LL H +
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL----------AEHAQNK 525
Query: 118 TIIITTH 124
T+++ TH
Sbjct: 526 TVLMITH 532
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 47.5 bits (113), Expect = 2e-07
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 15 QEIALFEEFTISETFAFFSK--LYNIPRSSVEAVIKD-LQLV-----LDLPPGNQLCSTL 66
Q +L T+ E A L ++ +S A++++ + LV D PG L
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ-----L 115
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGG +RV+IA L P +++LDEP +D L + L ++ + T+++ TH +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 127 EEA 129
+EA
Sbjct: 176 DEA 178
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 47.4 bits (112), Expect = 3e-07
Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQA 71
+ +++ F+ + + + + +L L L +S G
Sbjct: 138 SLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLL--KLLIKGISDGTK 195
Query: 72 RRVSIAVTLL---HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
R +++ + LL ++++DEP +G+ P L + L L+ +I TTH
Sbjct: 196 RLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKG-AQLIFTTH 250
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 47.3 bits (112), Expect = 3e-07
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P+I+++DEPTS +DP + L TIII TH
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT--TIIIVTHN 206
Query: 126 IEEA 129
+ +A
Sbjct: 207 MHQA 210
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 47.1 bits (112), Expect = 3e-07
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
LGF+ Q L +FT E A + + + + ++ + L N S LSG
Sbjct: 89 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSG 148
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G+ +RV+IA L+++P +++ DEPT +D A ++ L L ++ TH ++
Sbjct: 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
Query: 129 A----RQADMRE 136
A RQ +MR+
Sbjct: 209 AKRMSRQLEMRD 220
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 47.4 bits (113), Expect = 3e-07
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA + SP++I++DEP S +DP+ + ++ L TI+I TH
Sbjct: 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL--RQNYTIVIVTHS 221
Query: 126 IEEA 129
+++A
Sbjct: 222 MQQA 225
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 47.6 bits (113), Expect = 4e-07
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLY-NIPRSSVEA--VIKDLQLVLDLPPGNQL---- 62
+ ++PQ+ A + ++ E F L + +EA ++ DL++ LP G++
Sbjct: 701 VAYVPQQ-AWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEI---LPSGDRTEIGE 756
Query: 63 -CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLA-HYFWKYLNRLAHTDKRTII 120
LSGGQ +RVS+A + + DI + D+P S VD + H F + +T I
Sbjct: 757 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRI 816
Query: 121 ITTHYIEEARQADM 134
+ TH I Q D+
Sbjct: 817 LVTHGISYLPQVDV 830
Score = 31.5 bits (71), Expect = 0.15
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LS GQ + V +A LL I+VLDE T+ VD
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.0 bits (111), Expect = 4e-07
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 43 VEAVIKDLQLVLDLPPGNQLCST---LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
VE+ +KD L ++ +++ + LSGGQ +R+ IA L P ++++DEP G+DP+
Sbjct: 127 VESALKDADLWDEIK--HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
Query: 100 LAHYFWKYLNRLAHTDKRTIIITTH 124
+ + L + T++I +H
Sbjct: 185 ASMKVESLIQSLRLRSELTMVIVSH 209
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.0 bits (111), Expect = 4e-07
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P++I++DEP S +DP+ + + L TI I TH
Sbjct: 148 LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQN--YTIAIVTHN 205
Query: 126 IEEARQA 132
+++A +A
Sbjct: 206 MQQAARA 212
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 46.9 bits (112), Expect = 5e-07
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG---- 59
A+ + + Q+I LFE T+ + + IP + + KD + + P G
Sbjct: 552 ANSVAMVDQDIFLFEG-TVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAE 608
Query: 60 -NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
+ + LSGGQ +R+ IA L+ +P I++LDE TS +DP
Sbjct: 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 46.5 bits (111), Expect = 6e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+L LSGGQ +RV++A L+ I++LDEP S +DP L ++++ + T+
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTL 183
Query: 120 IITTHYIEEARQADMREL 137
++ +H +E+A + R L
Sbjct: 184 LMVSHSLEDAARIAPRSL 201
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 45.8 bits (109), Expect = 7e-07
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 46 VIKDLQLVLDLPPG----NQLCSTLSGGQARRVSIAVTLLHSPD--IIVLDEPTSGVDPL 99
I LQ ++D+ G Q STLSGG+ +RV +A L P + +LDEP++G+
Sbjct: 64 FIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQ 123
Query: 100 LAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
+ + + L T+I+ H ++ AD
Sbjct: 124 DINQLLEVIKGLI-DLGNTVILIEHNLDVLSSAD 156
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 46.4 bits (110), Expect = 8e-07
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR-TIIITTH 124
LSGGQ +R+ IA + P ++++DEP S +DP+ + + L K TII+ TH
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL---KKNFTIIVVTH 206
Query: 125 YIEEARQ 131
+++A++
Sbjct: 207 SMKQAKK 213
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 46.5 bits (111), Expect = 9e-07
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 44 EAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
E I ++ L L P L S LSGG R+ ++ L+ +PD+++LDEPT+ +D
Sbjct: 136 ENRINEVLAQLGLDPDAALSS-LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 31.8 bits (73), Expect = 0.096
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ R+ +A L ++++LDEPT+ +D
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 46.1 bits (110), Expect = 9e-07
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 16/66 (24%)
Query: 32 FSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDE 91
F +L+NI S+E I G LSGG ++V+IA L+ P +++LDE
Sbjct: 378 FIRLFNIKTPSMEQAI-----------GL-----LSGGNQQKVAIARGLMTRPKVLILDE 421
Query: 92 PTSGVD 97
PT GVD
Sbjct: 422 PTRGVD 427
Score = 31.9 bits (73), Expect = 0.085
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPT 93
+L LS G+ + V IA L +I++DEPT
Sbjct: 137 KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 45.8 bits (109), Expect = 1e-06
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 15 QEIALFEEFTISETF----------AFFSKLYNIP---RSSVEAVIKD---LQLVLDLPP 58
Q + LF E T+ E FS L P R+ EA+ + L+ V L
Sbjct: 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
N+ L+ GQ RR+ IA ++ P+I++LDEP +G++P
Sbjct: 147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 45.8 bits (108), Expect = 1e-06
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
N S LSGGQ +R++IA L P ++++DEPTS +D + + K + L ++ I
Sbjct: 148 NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL--KNEIAI 205
Query: 120 IITTHYIEE-ARQAD 133
+I +H ++ AR AD
Sbjct: 206 VIVSHNPQQVARVAD 220
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 45.6 bits (109), Expect = 1e-06
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD----PLLAHYFWKYLNRLAHTDKRTIII 121
SGG+ +R I LL PD+ +LDEP SG+D L+A + +N+L + ++++I
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA----EVINKL-REEGKSVLI 159
Query: 122 TTHY 125
THY
Sbjct: 160 ITHY 163
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 45.9 bits (109), Expect = 1e-06
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG-----NQ 61
+ + Q++ LF + TI+ A+ + R+ +E + V LP G +
Sbjct: 408 VALVSQDVVLFND-TIANNIAY-GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
LSGGQ +R++IA LL I++LDE TS +D L RL RT ++
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL--MQGRTTLV 523
Query: 122 TTHYIEEARQAD 133
H + +AD
Sbjct: 524 IAHRLSTIEKAD 535
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 45.4 bits (108), Expect = 1e-06
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 27 ETFAFFSKLYNIPRS----SVEAV-IKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLL 81
ET KL R+ ++EAV + D + VL P LSGG +RV IA+ LL
Sbjct: 87 ETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALL 141
Query: 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
P ++ DEPT+ +D + K L L I++ TH
Sbjct: 142 LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 45.4 bits (107), Expect = 2e-06
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+LSGGQ +R+ IA + P++++LDEP S +DP+ + + L TI + TH
Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL--KKDYTIALVTH 206
Query: 125 YIEEARQ 131
+++A +
Sbjct: 207 NMQQAIR 213
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 45.6 bits (108), Expect = 2e-06
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 18 ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQ---LCSTLSGGQARRV 74
AL+ + T+ + L I EAV + + L+ + ++ + LSGG+ +RV
Sbjct: 120 ALYGDDTVLDNV--LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRV 177
Query: 75 SIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
+A L P + + DEPT +DP A L ++++T+H+ E
Sbjct: 178 VLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
Score = 44.0 bits (104), Expect = 6e-06
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
++ LS G+ RV++A L+ P I++LDEPT +DP+
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPI 461
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ + +S+ + LH P I++LDE T+ +DP A + + ++ K T ++ TH
Sbjct: 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN 208
Query: 126 IEEA 129
+E+A
Sbjct: 209 MEDA 212
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 45.5 bits (108), Expect = 2e-06
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPP-GNQLCSTLSGGQAR 72
Q ALF ++ E + K+ +P+ + +K+ L+LV DL ++ +SGGQ +
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-DLAGFEDRYVDQISGGQQQ 143
Query: 73 RVSIAVTLLHSPDIIVLDEPTSGVD 97
RV++A L+ P +++ DEP S +D
Sbjct: 144 RVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 45.4 bits (108), Expect = 2e-06
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
LSGG+ +R++ A LLH P + LDE TS +D
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 45.5 bits (108), Expect = 2e-06
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 57 PPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
G+QL SGGQ +R++IA L+ P +++LDE TS +D + +R
Sbjct: 613 EKGSQL----SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR----AS 664
Query: 117 RTIIITTHYIEEARQAD 133
RT+++ H + +AD
Sbjct: 665 RTVLLIAHRLSTVERAD 681
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 44.8 bits (107), Expect = 2e-06
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ ++++IA L+ P +++LDEPT G+ P + + + RL I++ Y
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191
Query: 126 IEEARQA 132
++ AR+
Sbjct: 192 LDFAREL 198
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 44.9 bits (107), Expect = 2e-06
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD----PLLAHYFWKYLNRLAHTDKRTIII 121
SGG+ +R I LL P + +LDEP SG+D ++A + +N L + R ++I
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA----EGINAL-REEGRGVLI 199
Query: 122 TTHY 125
THY
Sbjct: 200 ITHY 203
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 45.2 bits (107), Expect = 3e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LS Q +R++IAV L+ +P II +DEPTSG+D A + + T RT++ T H
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1077
Score = 30.2 bits (68), Expect = 0.31
Identities = 15/64 (23%), Positives = 36/64 (56%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
G+++ +SGGQ +RV+ ++ + +DE ++G+D + K L ++ H + T
Sbjct: 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEAT 389
Query: 119 IIIT 122
++++
Sbjct: 390 VLMS 393
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 44.4 bits (105), Expect = 3e-06
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 14/76 (18%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL------AHYFWKYLNRLAHTDKR 117
S LSGGQ +RV+IA L+ +P +++LDE TS +D A Y W ++R
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW--------PERR 200
Query: 118 TIIITTHYIEEARQAD 133
T+++ H + +AD
Sbjct: 201 TVLVIAHRLSTVERAD 216
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 44.5 bits (106), Expect = 3e-06
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLV-LDLPPGNQLCSTLSGGQARRVSIAVTL 80
+ T+ E FF NIP+ + ++ L V L Q +TLSGG+A+R+ +A
Sbjct: 130 DMTVEEALEFFE---NIPK--IARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLA-KE 183
Query: 81 LHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEEAR 130
L + +LDEPT+G V LL L RL DK T+++ H ++ +
Sbjct: 184 LSKRSTGKTLYILDEPTTGLHFHDVKKLLE-----VLQRL--VDKGNTVVVIEHNLDVIK 236
Query: 131 QAD 133
AD
Sbjct: 237 CAD 239
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 44.6 bits (105), Expect = 3e-06
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R+ IA L P ++++DEP S +DP+ + ++ L + TI I TH
Sbjct: 151 LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL--RSELTIAIVTHN 208
Query: 126 IEEA 129
+++A
Sbjct: 209 MQQA 212
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 44.3 bits (105), Expect = 3e-06
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 12 FMPQEIALFEEFTISETFAFFSK-LYNIPRSSVEAVIKDLQL--VLDLPPGNQLCSTLSG 68
+ PQ I E T+ + + +K Y P E + K LQ+ +LD + LSG
Sbjct: 65 YKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTE-IAKPLQIEQILD-----REVPELSG 118
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDP---LLAHYFWKYLNRLAHTDKRTIIITTHY 125
G+ +RV+IA L DI +LDEP++ +D L+A K + R A +++T + H
Sbjct: 119 GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS---KVIRRFAENNEKTAFVVEHD 175
Query: 126 I 126
I
Sbjct: 176 I 176
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 44.3 bits (105), Expect = 4e-06
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ +R++IA +L I++LDE TS +D + L L RT +I H
Sbjct: 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETL--MKGRTTLIIAH 533
Query: 125 YIEEARQAD 133
+ +AD
Sbjct: 534 RLATVLKAD 542
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 44.3 bits (105), Expect = 4e-06
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 27/132 (20%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRS-------SVEAVIKDLQL---VLDLP 57
+G +PQ+ LF + TI YNI V A + Q+ + LP
Sbjct: 337 RAIGIVPQDTVLFND-TI---------AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 58 PGNQLCS-----TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
G LSGG+ +RV+IA T+L +P I++LDE TS +D L ++
Sbjct: 387 EGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS 446
Query: 113 HTDKRTIIITTH 124
RT ++ H
Sbjct: 447 --AGRTTLVIAH 456
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 43.6 bits (104), Expect = 5e-06
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP-----TSGVDPLLAHYFWKYLN 109
D+P LS GQ RRV++A L + +LDEP GV L A
Sbjct: 124 DVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALL------ 172
Query: 110 RLAHTDKR-TIIITTH 124
H ++ +I+TTH
Sbjct: 173 -AQHAEQGGMVILTTH 187
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 44.0 bits (105), Expect = 5e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +RV+IA L D+ +LDEP++ +D
Sbjct: 452 KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 41.7 bits (99), Expect = 4e-05
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 37/110 (33%)
Query: 20 FEEFTISETFAFFSKLYN--------------IP----------------RSSVEAVIKD 49
+ F +E +F KLYN IP R ++ V++
Sbjct: 140 LKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVER 199
Query: 50 LQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
L L +LD + S LSGG+ +RV+IA LL D DEPTS +D
Sbjct: 200 LGLENILD-----RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 43.2 bits (103), Expect = 5e-06
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG ++V +A L P +++LDEPT GVD ++ + LA + +++ +
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA-DAGKAVLLISSE 163
Query: 126 IEEARQ 131
++E
Sbjct: 164 LDELLG 169
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 43.9 bits (104), Expect = 5e-06
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV++A L+H P +++LDEP +D L + L T+++ T
Sbjct: 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191
Query: 124 HYIEEA 129
H + EA
Sbjct: 192 HDVSEA 197
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 43.8 bits (104), Expect = 6e-06
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLSGGQARRVSIA 77
+ T+ E + FF + +I R LQ + D+ G Q +TLSGG+A+R+ +A
Sbjct: 790 DMTVEEAYEFFEAVPSISRK--------LQTLCDVGLGYIRLGQPATTLSGGEAQRIKLA 841
Query: 78 VTLLH---SPDIIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
L + +LDEPT+G + LL + L RL T+++ H ++
Sbjct: 842 KELSKRSTGRTLYILDEPTTGLHFDDIKKLL-----EVLQRLVDKGN-TVVVIEHNLDVI 895
Query: 130 RQAD 133
+ AD
Sbjct: 896 KTAD 899
Score = 35.8 bits (83), Expect = 0.004
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 27/136 (19%)
Query: 17 IALFEEFTISETFAFFSKLYNIPRSS--VEAVIKD----LQLVLDLPPG----NQLCSTL 66
IA E +I E FF++L P E V+K+ L ++D+ ++ TL
Sbjct: 430 IADVSELSIREAHEFFNQLTLTPEEKKIAEEVLKEIRERLGFLIDVGLDYLSLSRAAGTL 489
Query: 67 SGGQARRVSIAVTLLHSPDI---IVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR------ 117
SGG+A+R+ +A T + S VLDEP+ G+ + RL +T KR
Sbjct: 490 SGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIGLHQ-------RDNRRLINTLKRLRDLGN 541
Query: 118 TIIITTHYIEEARQAD 133
T+I+ H + R AD
Sbjct: 542 TLIVVEHDEDTIRAAD 557
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 43.4 bits (103), Expect = 7e-06
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGGQ +R++IA L+ PD++V DEP S +D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 43.7 bits (104), Expect = 8e-06
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 30/126 (23%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLD-----LPPGNQLCSTLSGGQARRVSI 76
+ T+ E FF IP + + LQ ++D + G +TLSGG+A+RV +
Sbjct: 783 DMTVEEALEFFE---AIP-----KIARKLQTLVDVGLGYIKLGQPA-TTLSGGEAQRVKL 833
Query: 77 AVTLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
A L + +LDEPT+G + LL + L+RL T+I+ H ++
Sbjct: 834 A-KELSKRSTGKTLYILDEPTTGLHFDDIKKLL-----EVLHRLVD-KGNTVIVIEHNLD 886
Query: 128 EARQAD 133
+ AD
Sbjct: 887 VIKTAD 892
Score = 30.2 bits (69), Expect = 0.30
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 4/35 (11%)
Query: 64 STLSGGQARRVSIAVTLLHS--PDII-VLDEPTSG 95
TLSGG+A+R+ +A T + S ++ VLDEP+ G
Sbjct: 480 GTLSGGEAQRIRLA-TQIGSGLTGVLYVLDEPSIG 513
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 43.4 bits (103), Expect = 8e-06
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 46 VIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHY 103
++K L L +L+ + LSGG+ +RV+IA L D+ +LDEP++ +D
Sbjct: 439 IVKPLNLEDLLE-----RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493
Query: 104 FWKYLNRLAHTDKRTIIITTHYI 126
K + R +++T ++ H I
Sbjct: 494 VAKVIRRFIENNEKTALVVDHDI 516
Score = 40.4 bits (95), Expect = 9e-05
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 40 RSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
R + V++ L L VLD + S LSGG+ +RV+IA LL D+ DEP+S +D
Sbjct: 191 RGKFDEVVERLGLENVLD-----RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 43.2 bits (102), Expect = 9e-06
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 EAVIKDLQLV-LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ VI ++ V LD ++ + SGGQ +R++IA L+ P +I+LDEPTS +D
Sbjct: 403 QQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 40.5 bits (95), Expect = 1e-04
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +RV IA+ LL P++++ DEPT+ +D
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 43.3 bits (102), Expect = 9e-06
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
L+ G+ ++V IA+ L + P +++ DEPT+ ++P ++ L+RL TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 126 IE 127
++
Sbjct: 219 LQ 220
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 43.3 bits (103), Expect = 1e-05
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 16/76 (21%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP--------LLAHYFWKYLNRLAHTD 115
+ LSGGQ +RV+IA L +P +++ DE TS +DP LL K +NR
Sbjct: 139 AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL-----KDINRELGL- 192
Query: 116 KRTIIITTHYIEEARQ 131
TI++ TH ++ ++
Sbjct: 193 --TIVLITHEMDVVKR 206
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 43.4 bits (103), Expect = 1e-05
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGGQ +R++IA L+ P++I+LDEPTS +D
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALD 458
Score = 43.0 bits (102), Expect = 1e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ +RV IA+ L + PD+++ DEPT+ +D
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 43.2 bits (102), Expect = 1e-05
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 20/128 (15%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLY---NIPRSS----VEAVIKDLQL------VLDLP 57
G++ Q+ T+ E+ F + L ++ +S VE VIK L++ V+ +P
Sbjct: 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP 898
Query: 58 PGNQLCSTLSGGQARRVSIAVTLLHSPDIIV-LDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
L+ Q +R++I V L+ P +++ LDEPTSG+D A K + +LA
Sbjct: 899 G-----EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHG- 952
Query: 117 RTIIITTH 124
+ I+ T H
Sbjct: 953 QAILCTIH 960
Score = 38.6 bits (90), Expect = 5e-04
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
GN +SGG+ +RVSIA L I D T G+D A F + L A+ T
Sbjct: 203 GNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTT 262
Query: 119 IIIT 122
++
Sbjct: 263 PLVA 266
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 43.2 bits (102), Expect = 1e-05
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKL------------YNIPRSSVEAVIKDLQLVLDLP 57
+G + QE+++ +E T+ E + + + R ++ + L +DL
Sbjct: 82 IGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL- 139
Query: 58 PGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR 117
++ + LS + + IA TL+ +I++DEPTS + Y + +N+L +
Sbjct: 140 --DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGT 196
Query: 118 TIIITTHYIEEARQ 131
I+ +H + E R+
Sbjct: 197 AIVYISHKLAEIRR 210
Score = 37.8 bits (88), Expect = 8e-04
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
NQ + LSGG ++V I+ L P++I+ DEPT G+D +K + +LA K +
Sbjct: 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
Query: 120 IITTHYIE 127
++++ E
Sbjct: 464 MVSSELPE 471
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.6 bits (100), Expect = 1e-05
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 54 LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH 113
LD P G LSGGQ +R+ IA L P++++ DEPT+ +DP L
Sbjct: 140 LDAPAGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-- 192
Query: 114 TDKRTIIITTHYIEEA 129
TI++ TH+ ++A
Sbjct: 193 KKDMTIVLVTHFPQQA 208
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 42.9 bits (101), Expect = 1e-05
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT 114
LP G LSGG ++ +A LL +P +++LDEPT GVD + +K +N+LA
Sbjct: 398 FLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 115 DKRTIIITTHYIE 127
I++++ E
Sbjct: 453 GVAIIVVSSELAE 465
Score = 32.1 bits (73), Expect = 0.066
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 15 QEIALFEEFTISETFAFFSKL--------YNIPRSSVEAVIKDLQLVLDLPPGNQLCSTL 66
QE+ L E +++E +++ YN + ++++LQL D +
Sbjct: 85 QELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQL--DADNVTRPVGDY 142
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTS 94
GGQ + V IA L +++LDEP+S
Sbjct: 143 GGGQQQLVEIAKALNKQARLLILDEPSS 170
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 42.5 bits (100), Expect = 1e-05
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT 114
DLP SGG +R+ IA L+ P ++ +DEPT G+D + L L
Sbjct: 144 DLP------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 115 DKRTIIITTHYIEEAR 130
+II TH + AR
Sbjct: 198 LGLAVIIVTHDLGVAR 213
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 42.5 bits (100), Expect = 1e-05
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 7 ASMLGFMPQEIALFEEFTISETFA-----FFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQ 61
A + ++PQ++ E T+ E A + L + E V + + LV P ++
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR 143
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYF--WKYLNRLAHTDKRTI 119
L +LSGG+ +R IA+ + ++LDEPTS +D +AH ++RL+ T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQVDVLALVHRLSQERGLTV 201
Query: 120 IITTHYIEEA 129
I H I A
Sbjct: 202 IAVLHDINMA 211
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 42.1 bits (99), Expect = 2e-05
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA-HTDKRTIII 121
+ LS GQ RRV++A LL + +LDEPT+ +D ++ +A H + +++
Sbjct: 123 VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD---KAGVARFAEAMAGHCARGGMVV 179
Query: 122 -TTHYIEEARQADMREL 137
TTH +A REL
Sbjct: 180 LTTHQDLGLSEAGAREL 196
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 42.7 bits (100), Expect = 2e-05
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCS----- 64
+ ++PQ +F T+ E F S + R + LQ LDL PG L
Sbjct: 681 VAYVPQVSWIFNA-TVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERG 738
Query: 65 -TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH 102
+SGGQ +RVS+A + + DI + D+P S +D +AH
Sbjct: 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAH 777
Score = 30.3 bits (68), Expect = 0.27
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
S GQ + +S+A LL I+VLDE T+ VD
Sbjct: 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 42.4 bits (100), Expect = 2e-05
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 35 LYNIPRSSVEAVIKDLQLVLDLPPG--NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP 92
L ++ ++ A ++ +DL ++ LSGGQ +RV +A L P +++LDE
Sbjct: 119 LLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEA 178
Query: 93 TSGVDPLL 100
S +D +L
Sbjct: 179 VSNLDLVL 186
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 42.1 bits (99), Expect = 2e-05
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +RV +A L P +++LDEP +G+D + LA I++TTH
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA-GAGTAILMTTHD 172
Query: 126 IEEA 129
+ +A
Sbjct: 173 LAQA 176
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 41.9 bits (99), Expect = 2e-05
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 7 ASMLGFMPQEIALFEEFTISETFA--------FFSKLYNIPRSSVEAVIKDLQLVLDLPP 58
A L +PQ E T+ E A + +L + V ++ ++ L
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HL-- 131
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
++ + LSGGQ +R +A+ L +++LDEPT+ +D
Sbjct: 132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 41.4 bits (97), Expect = 3e-05
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +RV+IA LL + + DEP++ +D + + RL+ K+T ++ H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 41.6 bits (98), Expect = 3e-05
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 21/123 (17%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVT 79
E + E F++ ++ + ++E + + L DLP + LS GQ RR+++A
Sbjct: 87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLALARL 141
Query: 80 LLHSPDIIVLDEPTSGVDP----LLAHYFWKYLNRLAHTDKRTIII-TTHY---IEEARQ 131
L + +LDEPT+ +D LLA AH + I++ TTH + EAR+
Sbjct: 142 WLSRAPLWILDEPTTALDKAGVALLAGLL------RAHLARGGIVLLTTHQDLGLVEARE 195
Query: 132 ADM 134
+
Sbjct: 196 LRL 198
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 41.6 bits (98), Expect = 3e-05
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
SGG +RV IA+ LL P +++ DEPT+ +D + LN L II+ TH
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 41.2 bits (97), Expect = 4e-05
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
LPP +T SGG+ +RV+IA + I++LDEPT+ +D
Sbjct: 144 HLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 41.3 bits (97), Expect = 4e-05
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 50 LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
L L G LS GQ +R+++ + LL DI+VLDE + DP F++ L
Sbjct: 433 LAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492
Query: 110 RLAHTDKRTIIITTH 124
L +TI +H
Sbjct: 493 PLLKEQGKTIFAISH 507
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 41.3 bits (97), Expect = 5e-05
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT 114
DLP T SGG +R+ IA L+ P ++ +DEPT G+D + L L
Sbjct: 147 DLP------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
Query: 115 DKRTIIITTHYIEEAR 130
++I TH + AR
Sbjct: 201 LGLAVVIVTHDLAVAR 216
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 41.5 bits (98), Expect = 5e-05
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +R++IA LL P I++LDE TS +D
Sbjct: 470 RQLSGGERQRLAIARALLKDPPILILDEATSALD 503
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 40.9 bits (96), Expect = 6e-05
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
L+ G+ ++V IA+ L + P +++ DEPT+ ++P ++ L RL + TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 40.8 bits (96), Expect = 6e-05
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGGQ +R++IA LL I++LDE TS +D L+ L RT ++ H
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHR 538
Query: 126 IEEARQADM 134
+ +AD
Sbjct: 539 LSTIEKADE 547
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.4 bits (95), Expect = 9e-05
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
Q TLSGG ++V IA L SP ++++DEPT GVD
Sbjct: 397 AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
Score = 38.5 bits (90), Expect = 5e-04
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Query: 14 PQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARR 73
PQE LF ++ E F ++ ++ L LDL + +L +
Sbjct: 92 PQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL---DSSAGSLEVADRQI 148
Query: 74 VSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
V I L+ I++LDEPT+ + P + + L I+ +H + E RQ
Sbjct: 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGV-GIVFISHKLPEIRQ 205
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 40.4 bits (96), Expect = 9e-05
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 32/127 (25%)
Query: 22 EFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPG----NQLCSTLSGGQARRVSI 76
+ T+ E FF IP+ I LQ ++D+ G Q +TLSGG+A+RV +
Sbjct: 791 DMTVEEALEFFE---AIPK------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKL 841
Query: 77 AVTLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTHYI 126
A L + +LDEPT+G + LL + L+RL DK T+++ H +
Sbjct: 842 A-KELSKRSTGKTLYILDEPTTGLHFEDIRKLL-----EVLHRL--VDKGNTVVVIEHNL 893
Query: 127 EEARQAD 133
+ + AD
Sbjct: 894 DVIKTAD 900
Score = 26.6 bits (60), Expect = 5.6
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 32/101 (31%)
Query: 17 IALFEEFTISETFAFFSKLYNIPRSS--VEAVIKDLQ-------------LVLDLPPGNQ 61
I E +I E FF L + + E ++K+++ L L G
Sbjct: 431 IGEVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLKFLVDVGLDYLTLSRSAG-- 488
Query: 62 LCSTLSGGQARRVSIA-------VTLLHSPDIIVLDEPTSG 95
TLSGG+A+R+ +A +L+ VLDEP+ G
Sbjct: 489 ---TLSGGEAQRIRLATQIGSGLTGVLY-----VLDEPSIG 521
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 40.2 bits (94), Expect = 9e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
STLSGG+ +RV +A L P +++LDEPT+ +D
Sbjct: 136 STLSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 40.3 bits (95), Expect = 9e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
LSGG ++ +A LL +P I++LDEPT G+D + +K +N+L
Sbjct: 406 LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452
Score = 30.7 bits (70), Expect = 0.19
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 51 QLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS 94
QL LD+ P L GQ + V IA L +++LDEPT+
Sbjct: 130 QLKLDINP-ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 40.4 bits (94), Expect = 1e-04
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+Q LS GQ +RV+IA L+ ++LDEPT+G+DP + R+ +
Sbjct: 131 HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH-V 189
Query: 120 IITTHYIE 127
II++H I+
Sbjct: 190 IISSHDID 197
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 40.3 bits (95), Expect = 1e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
TLSGGQ +R+ IA L+ P I++ DE TS +D
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 39.9 bits (93), Expect = 1e-04
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +RV +A + +I+LDEP +GVD L L + +T++++TH
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTH 200
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 39.5 bits (93), Expect = 1e-04
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 55 DLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT 114
DLP +T SGG +R+ IA L+ P ++ +DEPT G+D + L L
Sbjct: 147 DLP------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
Query: 115 DKRTIIITTHYIEEAR 130
++I TH + AR
Sbjct: 201 LGLAVVIVTHDLAVAR 216
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ +RV++A PD++ DEPT +D
Sbjct: 146 QLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 39.4 bits (92), Expect = 2e-04
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 35 LYNIPRSSVEAVIKDLQLVLDLPP--GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEP 92
L ++ S +A I +L ++ L ++L LSGGQ +R++IA L P +IVLDE
Sbjct: 118 LTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 93 TSGVDPLL 100
S +D +L
Sbjct: 178 VSNLDMVL 185
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 39.0 bits (91), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ RV++ LL P ++LDEP S +D L F +++ + TH
Sbjct: 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTH 193
Query: 125 YIEEA 129
+++
Sbjct: 194 DLQDV 198
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 39.1 bits (91), Expect = 3e-04
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGG+ +R++IA +L + I+VLDE TS +D ++ L RT I
Sbjct: 470 NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKN--RTTFIIA 527
Query: 124 HYIEEARQADM 134
H + R AD+
Sbjct: 528 HRLSTVRNADL 538
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 38.9 bits (91), Expect = 3e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 40 RSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
R ++ ++ L+L VLD + LSGG+ +RV+IA L D DEP+S +D
Sbjct: 117 RGKLDELVDQLELRHVLD-----RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 38.9 bits (91), Expect = 3e-04
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 30 AFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVL 89
+ F++L R ++ ++ + L ++L + LS GQ + + I + L P +++L
Sbjct: 115 SLFARLRAEERRRIDELLATIGL---GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLL 171
Query: 90 DEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
DEP +G+ + L LA K +I++ H + R+
Sbjct: 172 DEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVRE 211
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 38.6 bits (90), Expect = 3e-04
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 38 IPRSSVEAVIKDLQLVLDLPPGNQLCS----TLSGGQARRVSIAVTLLHSPDIIVLDEPT 93
+PR A DL L+LP +L S T SGG+ +RV+IA + I++LDEPT
Sbjct: 123 VPREVARAKAADLLTRLNLPE--RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180
Query: 94 SGVD 97
+ +D
Sbjct: 181 ASLD 184
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 38.4 bits (89), Expect = 4e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+Q TLSGGQ +R IA+ L I++LDEPT+ +D
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 38.5 bits (90), Expect = 4e-04
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 24 TISETFAFFSKLY--NIPRSSVEAVIKDLQLVLDLPPG--NQLCSTLSGGQARRVSIAVT 79
TI E A + Y + R V+ +K + L + L P N+ SGGQ +R+ IA
Sbjct: 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARA 175
Query: 80 LLHSPDIIVLDEPTSGVD 97
L+ P +I+ DEP S +D
Sbjct: 176 LILEPKLIICDEPVSALD 193
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.7 bits (87), Expect = 4e-04
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLL-- 81
T++ A ++ +++ L SG R+ +A+ L
Sbjct: 17 TLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK 76
Query: 82 HSPDIIVLDEPTSGVDP-----LLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135
PD+++LDE TS +D LL + L L T+I+TT+ ++ A +R
Sbjct: 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR 135
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 38.7 bits (90), Expect = 4e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
TLSGGQ RV+ A P I++LDEP++ +D
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
T SGG R+++A L PD+++LDEPT+ +D + YL + +T I+ +H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP----KTFIVVSH 399
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 38.7 bits (90), Expect = 4e-04
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
S LS GQ R +A L P+++++DE + +D L A + ++ LA T+I+ T
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 124 HYIEEARQ 131
H E
Sbjct: 566 HRPEVGNA 573
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 37.9 bits (89), Expect = 5e-04
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYL-NRLAHTDKRTIIIT 122
LS GQ + + +A LL I+VLDE T+ VDP K + T++
Sbjct: 138 ENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKD---CTVLTI 194
Query: 123 THYIE 127
H ++
Sbjct: 195 AHRLD 199
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 37.7 bits (88), Expect = 5e-04
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 61 QLCSTLSGGQARRVSIAVTL---LHSPD-IIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
LSGG+ ++A+ L P + +LDE G+DP + +
Sbjct: 73 FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHL-VKG 131
Query: 117 RTIIITTHYIEEARQAD 133
+I+ TH E A AD
Sbjct: 132 AQVIVITHLPELAELAD 148
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 38.2 bits (89), Expect = 6e-04
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 50 LQLVLDLPPGNQLCS------TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH 102
LQ LDL PG L +SGGQ +RVS+A + + D+ + D+P S +D AH
Sbjct: 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD---AH 774
Score = 31.2 bits (71), Expect = 0.17
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
S GQ + +S+A LL I+VLDE T+ VD
Sbjct: 1376 SVGQRQLLSLARALLRRSKILVLDEATAAVD 1406
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 38.0 bits (89), Expect = 6e-04
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFW-KYLNRLAHTDKRTIIIT-- 122
LS GQ +R+++ + L DI++LDE + DP F+ L L K I+
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
Query: 123 THYIE------EARQADMREL 137
HY E R + EL
Sbjct: 510 DHYFIHADRLLEMRNGQLSEL 530
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 38.1 bits (89), Expect = 6e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
LS GQ R I L+ P +++LDEP G+DPL
Sbjct: 402 LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435
Score = 34.6 bits (80), Expect = 0.011
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LS G+ R+ + L+ PD+++LDEP G+D
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLD 167
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 37.1 bits (86), Expect = 0.001
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ L + LSGG+ +RV++A PD++ DEPT +D L L T+
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTL 200
Query: 120 IITTHYIEEARQADMR 135
I+ TH ++ A + D R
Sbjct: 201 ILVTHDLQLAARCDRR 216
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 37.5 bits (87), Expect = 0.001
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 56 LPPGNQLCSTLSGGQARRVSIAVTLLHS---PDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
LP G L S+LSGG+ +R+ +A LL P + VLDEPT+G+ L L
Sbjct: 801 LPLGRPL-SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLT 859
Query: 113 HTDKRTIIITTHYIEEARQAD 133
H T++I H + + AD
Sbjct: 860 HQG-HTVVIIEHNMHVVKVAD 879
Score = 34.8 bits (80), Expect = 0.009
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 20 FEEFTISETFAFFSKLYNIPRSSVEAVIKDLQ----LVLDLPPG----NQLCSTLSGGQA 71
F++ ++ E F F S+L S+E V++ L+ +++DL + +TLSGG+
Sbjct: 424 FQQMSLQELFIFLSQL-PSKSLSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQ 482
Query: 72 RRVSIAVTLLHSPDII--VLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
R ++A L I +LDEP+ G+ P H + +L T+++ H
Sbjct: 483 ERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEH 536
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 37.2 bits (87), Expect = 0.001
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG+ +R I L P + +LDE SG+D + +NRL R+ +I THY
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR-EPDRSFLIITHY 203
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 36.4 bits (84), Expect = 0.002
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH---YFWKYLNRLAHTDKRTIIIT 122
LSGG+ +RV IA +++ P +++ DEPT +D L+ ++ NR+ T+++
Sbjct: 138 LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG----VTVLMA 193
Query: 123 TH 124
TH
Sbjct: 194 TH 195
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 36.6 bits (85), Expect = 0.002
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 1 MRIATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVE--AVIKDLQLVLDLPP 58
A +PQ +L FT+ E + R E + DL
Sbjct: 68 WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG 127
Query: 59 -GNQLCSTLSGGQARRVSIAVTL--LH----SPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111
+ TLSGG+ +RV +A L L S + LDEPTS +D H+ + +L
Sbjct: 128 LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQL 187
Query: 112 AH 113
A
Sbjct: 188 AR 189
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 36.7 bits (85), Expect = 0.002
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 64 STLSGGQARRVSIA--------VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTD 115
TLSGG+ S+A + +++ LDEP +D + L L +D
Sbjct: 814 KTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL-SD 872
Query: 116 KRTIIITTH 124
R III +H
Sbjct: 873 GRQIIIISH 881
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 36.0 bits (83), Expect = 0.003
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL 100
Q T+SGG+ + ++I L+ P +++LDEP+ G+ P++
Sbjct: 133 QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPII 172
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 35.6 bits (82), Expect = 0.003
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 64 STLSGGQARRVSIAVTLLH-SPDI------IVLDEPTSGVDPLLAHYFWKYLNRLAHTDK 116
+ LSGG+ +RV +A +L +PD ++LDEP + +D + L+ L
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQG- 182
Query: 117 RTIIITTHYIEEA-RQAD 133
I++++H + R A
Sbjct: 183 LAIVMSSHDLNHTLRHAH 200
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 35.5 bits (82), Expect = 0.004
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +R+S+ L P +++LDE TS +D H + ++R ++ TH
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197
Query: 126 IEEARQAD 133
+E AD
Sbjct: 198 KDEINHAD 205
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.005
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG ++RV IA+ + P +++ DEPT+ +D + + L L + +++ TH
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 35.0 bits (81), Expect = 0.005
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG+ +R I L ++ +LDE SG+D + +N+L ++ +II+ THY
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN-SIILITHY 210
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 35.1 bits (82), Expect = 0.006
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 8/44 (18%)
Query: 65 TLSGGQARRVSIAVTL--LHSPD----IIVLDEPTSGVDPLLAH 102
LSGG+ +RV +A L L PD ++LDEPTS +D LAH
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD--LAH 175
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 35.5 bits (82), Expect = 0.006
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWK--YLNRLAHTDKRTIIITT 123
LSGGQ RVS+A + + D+ +LD+P S +D + + +L LA +T ++ T
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA---GKTRVLAT 839
Query: 124 HYIEEARQAD 133
H + +AD
Sbjct: 840 HQVHVVPRAD 849
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 35.2 bits (81), Expect = 0.006
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SGG+ +R I + P++ +LDE SG+D +N L KR+ II THY
Sbjct: 147 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHY 204
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 34.9 bits (81), Expect = 0.006
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 26/123 (21%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLSGGQARRVSIAVT 79
T++E + + L+ + + + L ++D+ G ++ TLSGG+A+R+ +A T
Sbjct: 97 TVTEIYDYLRLLF-----ARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA-T 150
Query: 80 LLHSP---DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR------TIIITTHYIEEAR 130
+ S + VLDEP+ G+ P + +RL T KR T+++ H + R
Sbjct: 151 QIGSGLTGVLYVLDEPSIGLHP-------RDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203
Query: 131 QAD 133
AD
Sbjct: 204 AAD 206
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 34.8 bits (80), Expect = 0.008
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG +RV IA+ L P +++ DEPT+ +D + + + L +I TH
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227
Score = 31.7 bits (72), Expect = 0.094
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGGQ +R+ IA L +P +I+ DE S +D
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 34.4 bits (79), Expect = 0.009
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL-AHYFWKYLNRLAHTDKRTIIITT 123
TLSGGQ R+S+A + D+ +LD P +D F + +L R I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTR--ILVT 216
Query: 124 HYIEEARQAD 133
+E ++AD
Sbjct: 217 SKMEHLKKAD 226
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 34.7 bits (80), Expect = 0.010
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHY--------------------FW 105
LSGG+ +R+++A H P +LDE TS V + Y W
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW 642
Query: 106 KYLNRLAHTDKR 117
KY L + D R
Sbjct: 643 KYHEYLLYMDGR 654
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 34.5 bits (80), Expect = 0.010
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95
++L LS GQ + + I + L+ P +++LDEP +G
Sbjct: 138 DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAG 173
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 34.3 bits (79), Expect = 0.010
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 85 DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
I+++DEP + + P L ++L +LA + + IIITTH
Sbjct: 276 IILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTH 315
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 32.5 bits (75), Expect = 0.012
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 64 STLSGGQARRVSIAVTLL-------------HSPDIIVLDEPTSGVDP 98
TLSGG+ ++V + L +P +I LDE + +D
Sbjct: 21 GTLSGGE-KQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDE 67
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 33.9 bits (78), Expect = 0.012
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LS GQ + + +A LL P ++VLDE T+ +D
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASID 157
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 33.9 bits (78), Expect = 0.013
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+SGG +R+ IA+ LL I+ DEPT+ +D + L + +++ TH
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 34.1 bits (78), Expect = 0.017
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL-AHYFWKYLNRLAHTDKRTIIITT 123
TLSGGQ R+S+A + D+ +LD P + +D + F L +L R I+ T
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTR--ILVT 605
Query: 124 HYIEEARQAD 133
+E ++AD
Sbjct: 606 SKLEHLKKAD 615
Score = 31.0 bits (70), Expect = 0.16
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS G + + +A ++L I++LDEP++ +DP+ K L + + ++ T+I++ H
Sbjct: 1354 LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ-SFSNC-TVILSEHR 1411
Query: 126 IE 127
+E
Sbjct: 1412 VE 1413
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 33.7 bits (78), Expect = 0.017
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTL 66
+LG +EI + I FS +L +DLP T
Sbjct: 109 GRLLGLSRKEIDEKIDEIIE-----FS---------------ELGDFIDLP-----VKTY 143
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK--RTIIITTH 124
S G R++ A+ PDI+++DE + D A + K RL K +T+I+ +H
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGD---AAFQEKCQRRLRELLKQGKTVILVSH 200
Query: 125 YIEEARQ 131
++
Sbjct: 201 DPSSIKR 207
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 33.7 bits (78), Expect = 0.018
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 52 LVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111
L +D+ P L LS GQ + V IA L + +I DEPTS + ++ + L
Sbjct: 128 LGVDIDPDTPL-KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIREL 186
Query: 112 AHTDKRTIIITTHYIEE 128
+ R I+ +H +EE
Sbjct: 187 -RAEGRVILYVSHRMEE 202
Score = 33.3 bits (77), Expect = 0.026
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 57 PPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
P QL LSGG ++ + L +I+LDEPT G+D
Sbjct: 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 33.3 bits (76), Expect = 0.027
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LS G + + +A ++L I++LDEP++ +DP+ K L + A D T+I++ H
Sbjct: 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADC-TVILSEHR 196
Query: 126 IE 127
IE
Sbjct: 197 IE 198
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 32.9 bits (75), Expect = 0.029
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 39 PRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
P + + + L++V LP N L+ GQ +RV++A L+ P II+ DE + +D
Sbjct: 122 PEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 32.9 bits (75), Expect = 0.034
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
++LSGG+ +RV +A L + +++LDEPT+ +D
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 33.2 bits (76), Expect = 0.035
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ LS GQ + +++A L+ +P I++LDE T+ +D
Sbjct: 475 NNLSVGQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 32.5 bits (74), Expect = 0.035
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK--DLQLVLDLPPGNQLCSTLS 67
++ + L E T+ E F+S++YN ++ A I L +LD + C +LS
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN-SAETLYAAIHYFKLHDLLD-----EKCYSLS 125
Query: 68 GGQARRVSIAVTLLHSPDIIVLDE 91
G + V+IA + D+ +LDE
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDE 149
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 33.0 bits (75), Expect = 0.037
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LS GQ +R+++ L I++ DE + DP +F++ L +TIII +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 124 H---YIEEARQ 131
H Y E A Q
Sbjct: 529 HDDQYFELADQ 539
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 32.2 bits (73), Expect = 0.064
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
Q T S G R+ A+++ +PDI+V+DE S D +N K TI
Sbjct: 138 YQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGK-TI 196
Query: 120 IITTHYIEEAR 130
+H + + +
Sbjct: 197 FFISHSLSQVK 207
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 31.8 bits (73), Expect = 0.067
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 64 STLSGGQARRVSIAVTLLH-SPDI------IVLDEPTSGVD 97
+ LSGG+ +RV +A +L PDI ++LDEP + +D
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 31.4 bits (72), Expect = 0.12
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 73 RVSIAVTLLHSPDIIVLDEPTSGVD 97
RV +A L +PDI++LDEPT+ +D
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD 187
Score = 29.1 bits (66), Expect = 0.63
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGG+ R+ ++ P+++V+DEPT+ +D
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
>gnl|CDD|178937 PRK00227, glnD, PII uridylyl-transferase; Provisional.
Length = 693
Score = 31.3 bits (71), Expect = 0.14
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 40 RSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARR-----VSIAVTLLHSPDII 87
R EA L L LPPG L +T G ARR + + LLH P
Sbjct: 8 REDAEASALALLGSLQLPPGTALAAT--GSLARREMTPYSDLDLILLHPPGAT 58
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 31.0 bits (70), Expect = 0.16
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 64 STLSGGQARRVSIAVTL--LHSPD-------IIVLDEPTSGVDPLLAH 102
+TLSGG+ RV A L L P ++LDEPT+ +D LAH
Sbjct: 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD--LAH 189
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 30.9 bits (70), Expect = 0.16
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
S SGG R+++A L+ D+++LDEPT+ +D
Sbjct: 148 SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
Score = 30.5 bits (69), Expect = 0.25
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 63 CSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGG+ R+ +A+ + P++++LDEPT+ +D
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 30.3 bits (69), Expect = 0.22
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 65 TLSGGQ------ARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
SGG+ R+++A T + I+ LDEPT+ +D
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE 154
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 30.3 bits (68), Expect = 0.34
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
Query: 65 TLSGGQ------ARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+LSGG+ A RV++A L + ++++DEPT+ +D
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 29.8 bits (67), Expect = 0.38
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
L LS GQ +R+++A L + +LDEP + +D
Sbjct: 134 LVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 29.5 bits (67), Expect = 0.42
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 67 SGGQAR-RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
SG AR S+A + PDI++LDE + D + LN L +K TI++ +H
Sbjct: 150 SGMYARLAFSVATHV--EPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-TIVLVSHD 206
Query: 126 IEEARQ 131
+ +Q
Sbjct: 207 LGAIKQ 212
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 29.8 bits (67), Expect = 0.43
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 66 LSGGQARRVSIAVTLL--HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LS G R +++A LL P +++LDEP + + P L + + A + +I++T
Sbjct: 271 LSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ--VIVST 328
Query: 124 HYIEEARQADMRE 136
H +
Sbjct: 329 HSPRLLNAVEEHS 341
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 1.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 50 LQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL 99
L+ ++D P C LS GQ R+V++ + + +LDEP +D L
Sbjct: 117 LEHLIDYP-----CGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 28.2 bits (63), Expect = 1.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
L+ GQ +R+ +A L+ P +I+ DE + +D
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 27.9 bits (62), Expect = 1.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAH--TDKRTIIITTH 124
S G ++ ++ + +PDI+V+DE S D A K L+++ +TI +H
Sbjct: 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ---KCLDKIYEFKEQNKTIFFVSH 201
Query: 125 YIEEARQ 131
+ + RQ
Sbjct: 202 NLGQVRQ 208
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 28.1 bits (63), Expect = 1.8
Identities = 37/144 (25%), Positives = 46/144 (31%), Gaps = 40/144 (27%)
Query: 1 MRIATGASMLG------------FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK 48
I TG + G M Q L F K + A I
Sbjct: 319 RLIITGPNTGGKTVTLKTLGLLRLMAQ-SGLPIPALEGSELPVFVK--------IFADIG 369
Query: 49 DLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVL-DEPTSGVDPL----LAHY 103
D Q + Q ST S ++ V +L D +VL DE SG DP LA
Sbjct: 370 DEQSI------EQSLSTFSS----HMTNIVEILEKADSLVLFDELGSGTDPDEGAALAIA 419
Query: 104 FWKYLNRLAHTDKRTIIITTHYIE 127
+ L I+ TTHY E
Sbjct: 420 ILEDLLEK----PAKIVATTHYRE 439
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 27.7 bits (62), Expect = 1.9
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 8 SMLGFMPQEIALFEEF--TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCST 65
S+ F P+ FEE +++ + + +E +I+DL +
Sbjct: 128 SLDLFNPKTKEDFEELRKALAKKLTKYESSPHYA-GFLEDLIRDL------------AAP 174
Query: 66 LSGGQARRVSIAVTLLHS 83
LS ++VS + +L +
Sbjct: 175 LSSEDIKKVSSTLNVLIN 192
>gnl|CDD|197224 cd09126, PLDc_C_DEXD_like, C-terminal putative phospholipase D-like
domain of uncharacterized prokaryotic HKD family
nucleases fused to DEAD/DEAH box helicases. C-terminal
putative phospholipase D (PLD)-like domain of
uncharacterized prokaryotic HKD family nucleases fused
to a DEAD/DEAH box helicase domain. All members of this
subfamily are uncharacterized. In addition to the
helicase-like region, members of this family also
contain a PLD-like domain in the C-terminal region,
which is characterized by a variant HKD (H-x-K-x(4)-D
motif, where x represents any amino acid residue) motif.
Due to the lack of key residues related to PLD activity
in the variant HKD motif, members of this subfamily are
most unlikely to carry PLD activity.
Length = 126
Score = 27.2 bits (61), Expect = 1.9
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 103 YFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137
Y + LA K++III++ Y+ + R + L
Sbjct: 9 YEEVFRKDLAQA-KKSIIISSPYVSQKRITKLINL 42
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 27.4 bits (61), Expect = 2.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 81 LHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+ I +LDEP + + P L LA + + III TH
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQ-IIIATH 186
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 27.5 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ +RV++ ++ P + + DEP S +D
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 26.4 bits (59), Expect = 4.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPL----LAHYFWKYLNRLAHTDKRTI 119
ST S + ++ + +++LDE SG DP+ LA + L +
Sbjct: 90 STFSS-HMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER----GALV 144
Query: 120 IITTHYIE 127
I TTHY E
Sbjct: 145 IATTHYGE 152
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase. This family includes
carbonic anhydrases as well as a family of
non-functional homologues related to YbcF.
Length = 149
Score = 26.0 bits (58), Expect = 4.8
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 49 DLQLVLDLPPGN--------QLCSTLSGGQARRVSIAVTLLHSPDIIVL 89
+L+ L PG+ + G + AV +L +I+VL
Sbjct: 12 PPELIFGLGPGDLFVIRNAGNIVPPPDGDVLASLEYAVEVLGVKEIVVL 60
>gnl|CDD|201590 pfam01085, HH_signal, Hedgehog amino-terminal signalling domain.
For the carboxyl Hint module, see pfam01079. Hedgehog is
a family of secreted signal molecules required for
embryonic cell differentiation.
Length = 160
Score = 26.0 bits (57), Expect = 5.6
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 39 PRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVS---IAVTLLHSPDIIVLDEPTSG 95
PR V K Q + ++ S G+ R S + ++PDII DE +G
Sbjct: 12 PRKLTPLVYK--QFIPNVSEKTLGASGRYEGKITRDSERFKELVPNYNPDIIFKDEEKTG 69
Query: 96 VDPLLAHYFWKYLNRLA 112
D L+ LN LA
Sbjct: 70 ADRLMTQRCKDKLNALA 86
>gnl|CDD|165679 PLN00107, PLN00107, FAD-dependent oxidoreductase; Provisional.
Length = 257
Score = 26.1 bits (57), Expect = 5.8
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 31 FFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLC 63
FF ++P S A I D++ + D+ P + LC
Sbjct: 62 FFQSAISVPLSGAAAFINDIKALRDIEP-DALC 93
>gnl|CDD|153382 cd07370, HPCD, The Class III extradiol dioxygenase,
homoprotocatechuate 2,3-dioxygenase, catalyzes the key
ring cleavage step in the metabolism of
homoprotocatechuate. 3,4-dihydroxyphenylacetate
(homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes
the key ring cleavage step in the metabolism of
homoprotocatechuate (hpca), a central intermediate in
the bacterial degradation of aromatic compounds. The
enzyme incorporates both atoms of molecular oxygen into
hpca, resulting in aromatic ring-opening to yield
alpha-hydroxy-delta-carboxymethyl cis-muconic
semialdehyde. HPCD is a member of the class III
extradiol dioxygenase family, a group of enzymes which
use a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 280
Score = 26.1 bits (58), Expect = 6.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 100 LAHYFWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137
L+H FW NR + I++ RQ D+R L
Sbjct: 180 LSHRFWP--NRELEAHEDPFTISS---PFNRQVDLRVL 212
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 26.0 bits (58), Expect = 7.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 54 LDLPPGNQLCSTL 66
L+L PG QLC TL
Sbjct: 853 LNLVPGKQLCETL 865
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 25.8 bits (57), Expect = 8.8
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 29 FAFFSKLYNI-PRSSVEAVIKDLQLVLDLP--PGNQLCSTLSGGQARRVSIAVTLLHSPD 85
F K NI P ++ +++ + +L G +L + LS +++ I + L S +
Sbjct: 50 FYKLCKKNNIKPIIGLDLEVENFRFILLAKNYSGYKLLNELSSKKSKNKEIELNDLDSDN 109
Query: 86 IIVLDEPTSG 95
II++D P +G
Sbjct: 110 IIIIDHPKNG 119
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 25.8 bits (57), Expect = 9.2
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 47 IKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS--GVDPLLAHY- 103
+ V +L G + L GG + VS LL +PD+I LD + ++ +
Sbjct: 176 LAGSIEVFELAGGINVADGLGGGGLKEVSPEQILLWNPDVIFLDTGSFYLSLEGYAKNRP 235
Query: 104 FWKYLNRLAHTDKR 117
FW+ L A + R
Sbjct: 236 FWQSLK--AVKNGR 247
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 25.7 bits (57), Expect = 9.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
G A + A + PD++V+D P +G D + K L +L
Sbjct: 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADREVL----KQLAKLK 387
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.397
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,302,871
Number of extensions: 665740
Number of successful extensions: 1212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 413
Length of query: 137
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 50
Effective length of database: 7,078,804
Effective search space: 353940200
Effective search space used: 353940200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)