RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17960
(137 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 129 bits (327), Expect = 2e-38
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTL 66
++ ++P+E + E F + Y S +E +++ + L ST
Sbjct: 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 147
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
S G R++ IA L+ +P + +LDEPTSG+D L A K L + + + TI++++H +
Sbjct: 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM 206
Query: 127 EEARQ 131
E
Sbjct: 207 LEVEF 211
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 126 bits (319), Expect = 8e-38
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLS 67
+ F+P+EI + + ++ + + LY + + + I D +++ + LS
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKKLGELS 135
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
G RRV +A TLL + +I VLD+P +D H K + + II + +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195
Query: 128 EA 129
Sbjct: 196 YC 197
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 85.0 bits (211), Expect = 4e-21
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 10 LGFMPQEIALFEEFTISET------FAFFSK--LYNIPRSSVEAVIKDLQLVLDLPP-GN 60
+GF+ L E+F E F +Y + L ++ +
Sbjct: 99 IGFVSHS--LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ 156
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHT-DKRTI 119
Q LS G+ +RV IA L+ P +++LDEP +G+D + L+ L+ + +
Sbjct: 157 QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAM 216
Query: 120 IITTHYIEEARQ 131
I TH+IEE
Sbjct: 217 IYVTHFIEEITA 228
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 82.8 bits (205), Expect = 2e-20
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQ 70
+P+ + T+++ + +L + R ++K L+L ++ + LS GQ
Sbjct: 78 TNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI--LRRKLYKLSAGQ 133
Query: 71 ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
+ V ++ L P+I+ LDEP VD H +Y+ + I+ TH ++
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY----GKEGILVTHELDML 188
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 82.3 bits (204), Expect = 4e-20
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 19 LFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV-------LDLPPGNQLCSTLSGGQA 71
F E + + AF K + R V V K ++ V D P LSGG+
Sbjct: 91 FFAE-RVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEK 144
Query: 72 RRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-AR 130
RRV+IA ++H PDI++LDEP G+D + + + T +T+I+ +H IE
Sbjct: 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDIETVIN 203
Query: 131 QAD 133
D
Sbjct: 204 HVD 206
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 78.0 bits (193), Expect = 1e-18
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 19 LFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLV-----LDLPPGNQLCSTLSGGQAR 72
LF ++ + +F + +P + + + L+ D P LS GQ +
Sbjct: 97 LFSA-SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKK 150
Query: 73 RVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE-ARQ 131
RV+IA L+ P +++LDEPT+G+DP+ K L + TIII TH I+
Sbjct: 151 RVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLY 210
Query: 132 AD 133
D
Sbjct: 211 CD 212
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 79.3 bits (196), Expect = 2e-18
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 2 RIATGASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSS-VEAVIKDLQLV--LDLPP 58
+ +L + PQ I + T+ + SK S E V K L L L+
Sbjct: 324 SVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV 383
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRT 118
+ LSGG+ +++ IA TL D+ VLD+P+S +D + K + R+ K
Sbjct: 384 -----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 119 IIITTHYIEEARQ 131
I H +
Sbjct: 439 TFIIDHDLSIHDY 451
Score = 60.4 bits (147), Expect = 7e-12
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Query: 40 RSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
R + V + L + + + LSGG +R+ +A +LL D+ + D+P+S +D
Sbjct: 116 RGKKDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 98 PLLAHYFWKYLNRLAHTDKRTIIITTH 124
K + L + +I+ H
Sbjct: 171 VRERMNMAKAIRELLK--NKYVIVVDH 195
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 73.1 bits (180), Expect = 3e-16
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV--LDLPPGNQLCSTLSGG 69
+ PQ I E T+ E + ++K L ++ D LSGG
Sbjct: 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGG 475
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+ +RV+IA TLL DI +LDEP++ +D + + L +++T ++ H
Sbjct: 476 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 60.4 bits (147), Expect = 7e-12
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 40 RSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
E V+K+L+L VLD LSGG+ +RV+IA LL DEP+S +D
Sbjct: 206 VGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 98 PLLAHYFWKYLNRLAHTDKRTIIITTH 124
+ + RLA+ K +++ H
Sbjct: 261 IRQRLKVARVIRRLANEGK-AVLVVEH 286
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 72.8 bits (179), Expect = 3e-16
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 43 VEAVIKDLQLV--LDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLL 100
V+K L++ +D LSGG+ +RV+I + L DI ++DEP++ +D
Sbjct: 448 QTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Query: 101 AHYFWKYLNRLAHTDKRTIIITTHYIEEARQ 131
K + R +K+T I H A
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDFIMATY 533
Score = 61.6 bits (150), Expect = 3e-12
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSS----VEAVIKDLQL--VLDLPPGNQLCST 65
PQ + I +L + V+ IK LQL VL
Sbjct: 168 IKPQYVD-NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDI-----EK 221
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGG+ +R +I ++ + D+ + DEP+S +D + + L K +I H
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK-YVICVEH 279
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 68.4 bits (168), Expect = 4e-15
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 7 ASMLGFMPQEIALFEEFTISET--------FAFFSKLYNIPRSSVEAVIKDLQLVLDLPP 58
+GF+PQ + +++ + F+K + + L L L
Sbjct: 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNL-THL-- 121
Query: 59 GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAH--YFWKYLNRLAHTDK 116
+ ++LSGGQ + + IA + +I+LDEPTS +D LA+ L LA +
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD--LANQDIVLSLLIDLAQSQN 179
Query: 117 RTIIITTHYIEEA 129
T++ TTH +
Sbjct: 180 MTVVFTTHQPNQV 192
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 65.0 bits (159), Expect = 2e-13
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL--VLDLPPGNQLCSTLSGG 69
+ PQ I E T+ E + ++K L + + D LSGG
Sbjct: 351 YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE-----LSGG 405
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+ +RV+IA TLL DI +LDEP++ +D + + L +++T ++ H
Sbjct: 406 ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
Score = 55.4 bits (134), Expect = 4e-10
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 18/92 (19%)
Query: 40 RSSVEAVIKDLQL--VLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+E V+K L+L VL+ LSGG+ +RV+IA LL + DEP+S +D
Sbjct: 136 TGKLEEVVKALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
Query: 98 P-----LLAHYFWKYLNRLAHTDKRTIIITTH 124
+ + RL+ K ++++ H
Sbjct: 191 IRQRLNAA-----RAIRRLSEEGK-SVLVVEH 216
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 58.9 bits (142), Expect = 3e-11
Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 11 GFMPQEI-ALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGG 69
++ +I + ++ + F + + +++ + + ++ S LSGG
Sbjct: 498 VYVEHDIDGTHSDTSVLD---FVFESGVGTKEAIKDKLIEFGFTDEMI--AMPISALSGG 552
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
++++A +L + DI++LDEPT+ +D + + YLN T I +H
Sbjct: 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC----GITSITISH 603
Score = 55.0 bits (132), Expect = 5e-10
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 38 IPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ R +E L L ++ +++ LSGGQ ++ +A P +IVLDEPT+ +D
Sbjct: 875 LTRKEIEEHCSMLGLDPEIVSHSRI-RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Query: 98 PLLAHYFWKYLNRLAHTDKRTIIITTH 124
K L + +II TH
Sbjct: 934 RDSLGALSKALKEF----EGGVIIITH 956
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 55.4 bits (133), Expect = 3e-10
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 48 KDLQLVLDLPPGNQLCSTLSGGQARRVSIAV------TLLHSPDIIVLDEPTSGVDPLLA 101
++L + + + LSGG+ + +A L +++LDEPT +D
Sbjct: 231 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERR 290
Query: 102 HYFWKYLNRLAHTDKRTIIITTHYIEEARQADMR 135
+ R +I+ +H E AD
Sbjct: 291 RKLITIMERYL-KKIPQVILVSHDEELKDAADHV 323
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 54.8 bits (133), Expect = 4e-10
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 27/142 (19%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI----PRSSVEAVIKDLQL------VLDLP 57
+G + Q+ L +I + NI P SVE VI +L + +L
Sbjct: 83 RQVGVVLQDNVLLNR-SIID---------NISLANPGMSVEKVIYAAKLAGAHDFISELR 132
Query: 58 PG-NQLC----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLA 112
G N + + LSGGQ +R++IA L+++P I++ DE TS +D H + ++++
Sbjct: 133 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192
Query: 113 HTDKRTIIITTHYIEEARQADM 134
RT+II H + + AD
Sbjct: 193 KG--RTVIIIAHRLSTVKNADR 212
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 54.9 bits (133), Expect = 4e-10
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 12/74 (16%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPT------SGVDPLLAHYFWKYLNRLAHTDKRTI 119
LSGGQ +RV+IA L ++P II+ D+PT +G + + L +L D +T+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM------QLLKKLNEEDGKTV 199
Query: 120 IITTHYIEEARQAD 133
++ TH I AR +
Sbjct: 200 VVVTHDINVARFGE 213
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 53.2 bits (128), Expect = 5e-10
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 11/120 (9%)
Query: 24 TISETFAFFSKLYNIPRSSVEA--VIKDLQLVLDLPPGNQLCSTLSGGQARRVSIA---- 77
F++ S V ++L + + + LSGG+ + +A
Sbjct: 14 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLA 73
Query: 78 --VTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEEARQADM 134
+ L +++LDEPT +D + R K +I+ +H E AD
Sbjct: 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY--LKKIPQVILVSHDEELKDAADH 131
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 54.5 bits (132), Expect = 5e-10
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 33/144 (22%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNI----PRSSVEAVIKDLQL------VLDLP 57
S++G +PQ+ LF E TI YNI ++ E VIK + + LP
Sbjct: 93 SIIGIVPQDTILFNE-TI---------KYNILYGKLDATDEEVIKATKSAQLYDFIEALP 142
Query: 58 PGNQLCST--------LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLN 109
T LSGG+ +R++IA LL P I++ DE TS +D + F K +
Sbjct: 143 KKWD---TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVE 199
Query: 110 RLAHTDKRTIIITTHYIEEARQAD 133
L RT+II H + A+
Sbjct: 200 DLRK--NRTLIIIAHRLSTISSAE 221
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 54.1 bits (131), Expect = 8e-10
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 33/142 (23%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIP-------RSSVEAVIKDLQL---VLDLPPG 59
+G +PQ+ LF + TI NI VEA + + ++ P G
Sbjct: 130 IGVVPQDTVLFND-TI---------ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEG 179
Query: 60 NQLCST--------LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRL 111
+ T LSGG+ +RV+IA T+L +P II+LDE TS +D L ++
Sbjct: 180 YR---TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236
Query: 112 AHTDKRTIIITTHYIEEARQAD 133
RT I+ H + AD
Sbjct: 237 CAN--RTTIVVAHRLSTVVNAD 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 53.3 bits (129), Expect = 1e-09
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
LSGG+ +RV+IA L + P ++ DEPT +D ++ + +I++ TH
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSIVMVTHE 199
Query: 126 IEEARQAD 133
E A
Sbjct: 200 RELAELTH 207
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 52.9 bits (128), Expect = 2e-09
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDLQLVLDLPP-GNQLCSTLS 67
+GF+PQ+ ALF ++ A+ L N+ R + V + + + + ++ + LS
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAY--GLRNVERVERDRRVREMAEKL-GIAHLLDRKPARLS 128
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GG+ +RV++A L+ P +++LDEP S VD + L + I+ TH +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 128 EA 129
EA
Sbjct: 189 EA 190
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 52.9 bits (128), Expect = 2e-09
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
LSGGQ +RVSIA L PD+++ DEPTS +DP L + + +LA + +T+++ T
Sbjct: 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT 210
Query: 124 HYIEEARQ-AD 133
H + AR +
Sbjct: 211 HEMGFARHVSS 221
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 53.1 bits (128), Expect = 2e-09
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG-NQLC 63
+ LG + QE LF+ +I+E A+ + + K+ Q + LP N
Sbjct: 1107 AQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRV 1165
Query: 64 ----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGGQ +R++IA L+ P I++LDE TS +D + L++ RT
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--GRTC 1223
Query: 120 IITTHYIEEARQADM 134
I+ H + + AD+
Sbjct: 1224 IVIAHRLSTIQNADL 1238
Score = 50.4 bits (121), Expect = 2e-08
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG----- 59
++G + QE LF TI+E + ++ +E +K+ ++ LP
Sbjct: 464 EIIGVVSQEPVLFAT-TIAENIRY--GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ + LSGGQ +R++IA L+ +P I++LDE TS +D L++ RT
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTT 578
Query: 120 IITTHYIEEARQADM 134
I+ H + R AD+
Sbjct: 579 IVIAHRLSTVRNADV 593
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 51.8 bits (125), Expect = 5e-09
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%)
Query: 7 ASMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTL 66
A ++ Q+ + L+ ++ E + + + + L
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAGALALDDKLGRSTNQL 127
Query: 67 SGGQARRVSIAVTLL-------HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
SGG+ +RV +A +L + +++LDEP + +D K L+ L+ I
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLAI 186
Query: 120 IITTHYIEEA-RQAD 133
++++H + R A
Sbjct: 187 VMSSHDLNHTLRHAH 201
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 50.6 bits (122), Expect = 1e-08
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPGNQLC---- 63
GF+ Q+ A+ TI E + + + + V+ V ++P
Sbjct: 79 GFVSQDSAIMAG-TIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 64 -STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
+SGGQ +R++IA L +P I++LDE T+ +D K L+ L RT ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG--RTTLVI 194
Query: 123 TH 124
H
Sbjct: 195 AH 196
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 50.3 bits (121), Expect = 2e-08
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 17/101 (16%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLV------LDLPPG-- 59
+ +G + Q+ LF + T+ E P ++ E V++ ++ ++LP G
Sbjct: 415 NQIGLVQQDNILFSD-TVKENIL-----LGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468
Query: 60 ---NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ LSGGQ +R+SIA L++P I++LDE TS +D
Sbjct: 469 TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 50.0 bits (120), Expect = 2e-08
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 44 EAVIKDLQLVLD---LPPGNQLC-----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95
+VIK QL D + + TLSGGQ R+S+A + D+ +LD P
Sbjct: 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 96 VDPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
+D L F + +L +T I+ T +E ++AD
Sbjct: 190 LDVLTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKAD 226
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 49.5 bits (119), Expect = 2e-08
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 44 EAVIKDLQLVLD---LPPGNQLC-----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95
+VIK QL D + + TLSGGQ R+S+A + D+ +LD P
Sbjct: 101 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160
Query: 96 VDPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
+D L F + +L +T I+ T +E ++AD
Sbjct: 161 LDVLTEKEIFESCVCKLMA--NKTRILVTSKMEHLKKAD 197
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 49.5 bits (119), Expect = 3e-08
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 15/98 (15%)
Query: 45 AVIKDLQLVLDLPPGNQLCST--------LSGGQARRVSIAVTLLHSPDIIVLDEPTSGV 96
A++ DL++ LP G++ T LSGGQ +RVS+A + + DI + D+P S V
Sbjct: 105 ALLPDLEI---LPSGDR---TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
Query: 97 DPLLA-HYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
D + H F + +T I+ TH + Q D
Sbjct: 159 DAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVD 196
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 49.2 bits (118), Expect = 4e-08
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 19 LFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLV-----LDLPPGNQLCSTLSGGQAR 72
L T+ A +L N P+ V+ + + L LV D P S LSGGQ +
Sbjct: 116 LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQ 170
Query: 73 RVSIAVTLLHSPDIIVLDEPTSGVDP--------LLAHYFWKYLNRLAHTDKRTIIITTH 124
RV+IA L +P +++ D+ TS +DP LL K +NR TI++ TH
Sbjct: 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELL-----KDINRRLGL---TILLITH 222
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 49.5 bits (119), Expect = 5e-08
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG----- 59
+ Q + LF + TI+ A+ ++ R +E + ++ + ++P G
Sbjct: 417 RHFALVSQNVHLFND-TIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVI 474
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ ++LSGGQ +RV+IA LL +++LDE TS +D
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 49.1 bits (118), Expect = 5e-08
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 10/135 (7%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG-NQLC 63
+ + + QE LF + E A+ + AV + + P G +
Sbjct: 93 TQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 64 ----STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGGQ + V++A L+ P +++LD TS +D + L RT+
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTV 210
Query: 120 IITTHYIEEARQADM 134
++ T + A +A
Sbjct: 211 LLITQQLSLAERAHH 225
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 48.7 bits (117), Expect = 8e-08
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG----- 59
+ + + Q + LF + T++ A+ ++ R +E + + + + G
Sbjct: 417 NQVALVSQNVHLFND-TVANNIAY-ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 474
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
+ LSGGQ +R++IA LL I++LDE TS +D
Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 48.0 bits (115), Expect = 1e-07
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
+LSGGQA+RV+IA L P I++ DEPTS +DP
Sbjct: 158 DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 46.5 bits (111), Expect = 4e-07
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEA-VIKDLQLVLDLPP-GNQLCSTLS 67
+G + Q ALF+ T+ + +F + +P+ ++A V + L+ + L N+ LS
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM-RLESYANRFPHELS 147
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +RV++A L P +++ DEP + +D + ++ ++ T + TH E
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 128 EA 129
EA
Sbjct: 208 EA 209
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 45.3 bits (108), Expect = 1e-06
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPP-GNQLCSTLS 67
LG++ QE LF T+ A+ + I+ L+L + + LS
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-GISELAGRYPHELS 140
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +R ++A L P++I+LDEP S +D L + + + ++ + +H E
Sbjct: 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200
Query: 128 EA 129
EA
Sbjct: 201 EA 202
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 44.8 bits (107), Expect = 2e-06
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
++ LSGGQ + V I L+ +P +IV+DEP +GV P
Sbjct: 148 DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 44.9 bits (107), Expect = 2e-06
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGG 69
F+ Q +LF + + F ++ I + V+ + + + ++ TLSGG
Sbjct: 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--KRVLDTARDL-KIEHLLDRNPLTLSGG 131
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
+ +RV++A L+ +P I++LDEP S +DP + L+ L +K T++ TH EA
Sbjct: 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 43.6 bits (103), Expect = 4e-06
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDP 98
LS G + + +A ++L I++LDEP++ +DP
Sbjct: 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 42.1 bits (100), Expect = 1e-05
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 40 RSSVEAVIKDLQLVLDLPP-----GNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTS 94
R E + +DL+ + L P QL TLSGG+ + ++I L+ P ++++DEP+
Sbjct: 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168
Query: 95 GVDPLL 100
G+ P+L
Sbjct: 169 GLAPIL 174
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 41.9 bits (99), Expect = 2e-05
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVE------AVIKDLQLVLDLPPGNQLCSTLSG 68
Q AL+ T E AF + + + A I D+ VL+ P LSG
Sbjct: 89 QTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE-----LSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
Q +RV++A L+ P +++LDEP S +D + + + T+++ +H +
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203
Query: 129 A 129
Sbjct: 204 I 204
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 41.4 bits (98), Expect = 2e-05
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ +R++IA LL +P I++LDE TS +D
Sbjct: 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALD 515
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 40.6 bits (95), Expect = 6e-05
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 47 IKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTL-------LHSPDIIVLDEPTSGVDPL 99
KD ++ + P G LSGG+ V++++ L + + I+LDEPT +D
Sbjct: 262 TKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321
Query: 100 LAHYFWKYLNRLAHTDKRTIIITTH 124
+ ++ +II TH
Sbjct: 322 RRAKLAEIFRKV--KSIPQMIIITH 344
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 40.2 bits (95), Expect = 6e-05
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
SGGQ +R+SIA L+ P +++LD+ TS VD
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 39.8 bits (94), Expect = 1e-04
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG----NQLCSTLSGGQARRVSIAVT 79
T+ E FF+ + A+ + L + ++ G Q + LSGG+A+R+ +A T
Sbjct: 693 TVDEAHDFFA---DES-----AIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLA-T 743
Query: 80 LLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEEA 129
L + VLDEPT+G V+ L L +L D T+I H ++
Sbjct: 744 ELRRSGRGGTVYVLDEPTTGLHPADVERLQRQ-----LVKL--VDAGNTVIAVEHKMQVV 796
Query: 130 RQAD 133
+D
Sbjct: 797 AASD 800
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LS GQ + ++I L +P I++LDE TS VD
Sbjct: 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 39.4 bits (93), Expect = 1e-04
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 32/125 (25%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPG----NQLCSTLSGGQARRVSIAV 78
T+ E FF NIP IK LQ++ D+ G Q +TLSGG+A+R+ +A
Sbjct: 768 TVDEALEFFK---NIPS------IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLA- 817
Query: 79 TLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTHYIEE 128
+ L D + +LDEPT G V L+ + L+RL D+ T+I+ H ++
Sbjct: 818 SELRKRDTGRTLYILDEPTVGLHFEDVRKLV-----EVLHRL--VDRGNTVIVIEHNLDV 870
Query: 129 ARQAD 133
+ AD
Sbjct: 871 IKNAD 875
Score = 25.9 bits (58), Expect = 6.3
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 32/101 (31%)
Query: 17 IALFEEFTISETFAFFSKLYNIPRSSV--EAVIKDLQ-------------LVLDLPPGNQ 61
I F E +ISE F L R ++K+++ L L
Sbjct: 406 IHEFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLSRSAT-- 463
Query: 62 LCSTLSGGQARRVSIA-------VTLLHSPDIIVLDEPTSG 95
TLSGG+++R+ +A +++ VLDEPT G
Sbjct: 464 ---TLSGGESQRIRLATQIGSGLTGVIY-----VLDEPTIG 496
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 38.3 bits (90), Expect = 3e-04
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 32/116 (27%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPG----NQLCSTLSGGQARRVSIAV 78
T+ + FF+ +IP+ IK L+ + D+ G Q +TLSGG+A+RV +A
Sbjct: 506 TVEDALDFFA---SIPK------IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA- 555
Query: 79 TLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTH 124
LH + +LDEPT+G + LL L+RL D T+++ H
Sbjct: 556 AELHRRSNGRTLYILDEPTTGLHVDDIARLL-----DVLHRL--VDNGDTVLVIEH 604
Score = 25.2 bits (56), Expect = 8.4
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 32/101 (31%)
Query: 17 IALFEEFTISETFAFFSKLYNIPRSSV--EAVIKDLQ-------------LVLDLPPGNQ 61
I +++E AFF L + + ++++++ L L G
Sbjct: 144 IGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAG-- 201
Query: 62 LCSTLSGGQARRVSIA-------VTLLHSPDIIVLDEPTSG 95
TLSGG+A+R+ +A +L+ VLDEP+ G
Sbjct: 202 ---TLSGGEAQRIRLATQIGSRLTGVLY-----VLDEPSIG 234
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 37.9 bits (89), Expect = 5e-04
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 32/116 (27%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPG----NQLCSTLSGGQARRVSIAV 78
T+ + FF+ +IP+ IK L+ + D+ G Q +TLSGG+A+RV +A
Sbjct: 808 TVEDALDFFA---SIPK------IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA- 857
Query: 79 TLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTH 124
LH + +LDEPT+G + LL L+RL D T+++ H
Sbjct: 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLL-----DVLHRL--VDNGDTVLVIEH 906
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 37.1 bits (87), Expect = 8e-04
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 32/116 (27%)
Query: 24 TISETFAFFSKLYNIPRSSVEAVIKD-LQLVLDLPPG----NQLCSTLSGGQARRVSIAV 78
+I E FF I + L+ ++D+ G Q TLSGG+A+RV +A
Sbjct: 826 SIEEAAEFFE---PIAG------VHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLA- 875
Query: 79 TLLHSPD----IIVLDEPTSG-----VDPLLAHYFWKYLNRLAHTDK-RTIIITTH 124
+ L + +LDEPT+G + LL +N L DK T+I+ H
Sbjct: 876 SELQKRSTGRTVYILDEPTTGLHFDDIRKLL-----NVINGL--VDKGNTVIVIEH 924
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.001
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 40/116 (34%)
Query: 23 FTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLH 82
T E + K + DLP ++ + RR+SI +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQ-------------DLPR--EVLT----TNPRRLSIIAESIR 338
Query: 83 SPDIIVLDEPTSGVDPLLAHY-FWKYLNRLAHTDKRTIIITTHYIEEARQADMREL 137
D A + WK++N DK T II + + A+ R++
Sbjct: 339 -------DGL--------ATWDNWKHVN----CDKLTTIIES-SLNVLEPAEYRKM 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 36.0 bits (84), Expect = 0.002
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSS----VEAVIKDLQL--VLDLPPGNQLCSTLSG 68
Q AL+ T+ + AF +L PR V V K L + +L+ P LSG
Sbjct: 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ-----LSG 136
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
GQ +RV+IA L+ P++++LDEP S +D LL L RL T + TH
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTH 192
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 35.3 bits (82), Expect = 0.003
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVE------AVIKDLQLVLDLPPGNQLCSTLSG 68
Q A++ T+ E AF K+ P+ ++ A + ++ +L+ P LSG
Sbjct: 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-----LSG 144
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
GQ +RV++A ++ PD++++DEP S +D
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.007
Identities = 29/148 (19%), Positives = 34/148 (22%), Gaps = 51/148 (34%)
Query: 14 PQEIALFEEFTISET--FAFF-------------SKLYNIPRSSVEAVIKDLQLVLD--- 55
ALF A F LY V +IK L
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 56 ---------LPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDE-PTSGVDPL-----L 100
G + L PD L P S PL L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNT-----------PDKDYLLSIPISC--PLIGVIQL 246
Query: 101 AHY--FWKYLNRLAHTDKRTII--ITTH 124
AHY K L + R+ + T H
Sbjct: 247 AHYVVTAKLLG-FTPGELRSYLKGATGH 273
Score = 33.5 bits (76), Expect = 0.014
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 35/91 (38%)
Query: 65 TLSGGQARRVSIAV-TLLH-----------------SPDIIVLDEPTSGVDPLLAHYFWK 106
TLS G + V T + DEPT+ + L+ +
Sbjct: 10 TLSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE-LVGKF--- 64
Query: 107 YLNRLAHTDKRTIIITTHYIEEARQADMREL 137
L + + +E ++ ++
Sbjct: 65 ----LGY--------VSSLVEPSKVGQFDQV 83
Score = 30.8 bits (69), Expect = 0.13
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 16/65 (24%)
Query: 37 NIPRSSVEAVIKD-------LQL----VLDLPPGN-----QLCSTLSGGQARRVSIAVTL 80
+I V+ +I+ Q +LD PG L G RV +A TL
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Query: 81 LHSPD 85
+PD
Sbjct: 534 DINPD 538
Score = 29.2 bits (65), Expect = 0.45
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 20/59 (33%)
Query: 37 NIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSG 95
N+ + V+ + + S L ++V I+ L++ +V+ SG
Sbjct: 343 NLTQEQVQDYVN------------KTNSHLP--AGKQVEIS--LVNGAKNLVV----SG 381
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 33.7 bits (78), Expect = 0.010
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVE------AVIKDLQLVLDLPPGNQLCSTLSG 68
Q AL+ T+ + AF KL +PR ++ A + L +L+ P LSG
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSG 142
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
GQ +RV++ ++ P + ++DEP S +D
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.7 bits (78), Expect = 0.013
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 15 QEIALFEEFTISETFAFFSKLYNIPRSSVE------AVIKDLQLVLDLPPGNQLCSTLSG 68
Q AL+ T+ E AF + I + VE A + +LD P LSG
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ-----LSG 136
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
GQ +RV++A L+ P +++ DEP S +D
Sbjct: 137 GQQQRVALARALVKQPKVLLFDEPLSNLD 165
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.4 bits (71), Expect = 0.080
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 64 STLSGGQARRVSIAVTLLHSP------DIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR 117
LSGG+ +SI++ + + D +DE S +D L L +
Sbjct: 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL-ERLNK 336
Query: 118 TIIITTHYIEEARQA 132
I+ TH E +A
Sbjct: 337 VIVFITH-DREFSEA 350
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 30.2 bits (69), Expect = 0.17
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSG--VDPL--LAHYFWKYLNRLAHTDKRTIIIT 122
SGG+ +R I + P++ +LDE SG +D L +A +N L KR+ II
Sbjct: 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA----DGVNSL-RDGKRSFIIV 220
Query: 123 THY 125
THY
Sbjct: 221 THY 223
>3nqp_A SUSD superfamily protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Length = 514
Score = 29.8 bits (67), Expect = 0.26
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPPGNQLCSTLSGGQARRVSI--AVTLL 81
+ RS+ + V DL ++ G+ S L+
Sbjct: 156 LYMARSTPKEVMTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLM 207
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 29.4 bits (67), Expect = 0.27
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSG--VDPL--LAHYFWKYLNRLAHTDKRTIIIT 122
SGG+ +R I L+ P VLDE SG +D L +A + +N + ++
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA----RGVNAM-RGPNFGALVI 199
Query: 123 THY 125
THY
Sbjct: 200 THY 202
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 27.5 bits (62), Expect = 1.4
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVD 97
LSGGQ +RV+I TL+ P + +LDEP S +D
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 26.6 bits (59), Expect = 2.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 80 LLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
++ + + P +G DP LA K L + ++ II H
Sbjct: 196 ASYTKENFEDEVPFAGFDPELALSSIKRLKEVVK-KEKPIIFFGH 239
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: a.4.1.15
Length = 70
Score = 25.1 bits (54), Expect = 3.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 33 SKLYNIPRSSVEAVIKDLQLVLDLPPGNQL 62
+Y IP S++E +K+ L PP ++
Sbjct: 37 QSIYGIPHSTLEYKVKERLGTLKNPPKKKM 66
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Length = 478
Score = 26.3 bits (58), Expect = 3.5
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPP 58
++PR+ + V +L ++ P
Sbjct: 145 PSMPRTDAQTVLSYAKAELLTAIEDLP 171
>3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Length = 481
Score = 26.3 bits (58), Expect = 4.2
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPP 58
+PR+++ V + DLQ +LD P
Sbjct: 155 APLPRTNMVIVLQNCLADLQPLLDDDP 181
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins,
structural genomics, J center for structural genomics,
JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Length = 454
Score = 26.3 bits (58), Expect = 4.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPPGN 60
N PRS+V I+ L+ + L
Sbjct: 153 ENPPRSTVAQAYDFIIETLEEAVTLMSEE 181
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 25.4 bits (55), Expect = 5.7
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 82 HSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
+I++DE G L + F + ++ H ++ T
Sbjct: 98 DRRKVIIIDE--IGKMELFSKKFRDLVRQIMHDPNVNVVATIP 138
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric
regulation, ACT domain, transferase, amino acid
biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP:
c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Length = 449
Score = 25.7 bits (57), Expect = 6.5
Identities = 6/51 (11%), Positives = 17/51 (33%)
Query: 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
+ ++ ++ +P +A +L ++IT +I
Sbjct: 135 VQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQGFI 185
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein;
alpha-alpha superhelix, structural genomics; HET: MSE;
1.88A {Bacteroides thetaiotaomicron}
Length = 460
Score = 25.6 bits (56), Expect = 7.6
Identities = 7/40 (17%), Positives = 10/40 (25%), Gaps = 4/40 (10%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPPGNQLCSTLSGGQA 71
+S+V V DL L D +
Sbjct: 149 KPKGKSTVAQVYQQIFDDLNLAQDYLTNYVRKGDGQKFKP 188
>3jq1_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Length = 481
Score = 25.4 bits (56), Expect = 8.3
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 36 YNIPRSSVEAV----IKDLQLVLD-LPPGNQL 62
+ + +SS + +DL+ LP N++
Sbjct: 143 FPLAKSSQADIWAQAKEDLKTAASLLPITNKI 174
>3l22_A SUSD superfamily protein; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 2.05A {Bacteroides fragilis}
Length = 441
Score = 25.2 bits (55), Expect = 8.8
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 36 YNIPRSSVEAV----IKDLQLVLDLPP 58
N+PRS+V+ + + DL+ + L
Sbjct: 161 NNMPRSTVKQIYEHILSDLENISALDT 187
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil;
oxidoreductase; HET: MA5 NAP EPE; 2.70A
{Methanocaldococcus jannaschii} SCOP: c.71.1.2
Length = 219
Score = 24.8 bits (55), Expect = 9.3
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 110 RLAHTDKRTIIITTHYIEEARQADMREL 137
R+ + D +TII TT E ++ ++ L
Sbjct: 87 RVLNKDAKTIIATTEDTNEEKEKKIKIL 114
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 25.2 bits (56), Expect = 9.5
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 80 LLHSPDIIVLDEPTSGVDP 98
+ D +++D P +G+ P
Sbjct: 350 SVKGFDTVIVDPPRAGLHP 368
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.397
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,179,324
Number of extensions: 124739
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 95
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)