RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17960
(137 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 106 bits (266), Expect = 4e-30
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLS 67
+ + Q A++ T+ E AF K+ P+ ++ ++ +L + N+ + LS
Sbjct: 79 NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLS 138
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +RV++A ++ PD++++DEP S +D L + +L K T I TH
Sbjct: 139 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198
Query: 128 EARQ 131
EA
Sbjct: 199 EAMT 202
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 101 bits (252), Expect = 4e-28
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIK---DLQLVLDLPP--GNQLC 63
+GF+ Q+ L T E S E K + + +L N
Sbjct: 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP 143
Query: 64 STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITT 123
+ LSGGQ +RV+IA L ++P II+ D+PT +D + L +L D +T+++ T
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 124 HYIEEARQAD 133
H I AR +
Sbjct: 204 HDINVARFGE 213
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 95.3 bits (237), Expect = 7e-26
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSG 68
+G + Q L T+ A +L N P+ V+ + +L ++ L + S LSG
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
GQ +RV+IA L +P +++ DE TS +DP + L + TI++ TH ++
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203
Query: 129 ARQ 131
++
Sbjct: 204 VKR 206
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 89.7 bits (222), Expect = 1e-23
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLS 67
++ ++P+E + E F + Y S +E +++ + L ST S
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYS 135
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
G R++ IA L+ +P + +LDEPTSG+D L A K L + + + TI++++H +
Sbjct: 136 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNML 194
Query: 128 EARQ 131
E
Sbjct: 195 EVEF 198
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 88.5 bits (219), Expect = 4e-23
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGGQ 70
+ Q AL+ T+ + AF KL +PR ++ ++++ +L L N+ LSGGQ
Sbjct: 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQ 144
Query: 71 ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130
+RV++ ++ P + ++DEP S +D L L +L T I TH EA
Sbjct: 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204
Query: 131 Q 131
Sbjct: 205 T 205
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 88.0 bits (218), Expect = 5e-23
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGG 69
+P+ +F E T+ E + + L L QL TLSGG
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGG 143
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
+ + ++I L+ P ++++DEP+ G+ P+L ++ + ++ + + TI++ A
Sbjct: 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNALGA 202
Query: 130 RQ 131
+
Sbjct: 203 LK 204
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 86.9 bits (215), Expect = 7e-23
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLS 67
+ F+P+EI + + ++ + + LY + + E I D +++ + LS
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE--IMDALESVEVLDLKKKLGELS 127
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
G RRV +A TLL + +I VLD+P +D H K + + II + +
Sbjct: 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 187
Query: 128 EARQADM 134
+
Sbjct: 188 YCDVNEN 194
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 85.7 bits (212), Expect = 7e-22
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Query: 10 LGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG-----NQLCS 64
+ F Q + TI E F SV + Q + +
Sbjct: 99 VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
TLSGGQ R+S+A + D+ +LD P +D ++ + +T I+ T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMAN-KTRILVTS 216
Query: 125 YIEEARQAD 133
+E R+AD
Sbjct: 217 KMEHLRKAD 225
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 81.8 bits (202), Expect = 2e-20
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 10 LGFMPQEIALFEEFTISETFAFFS-KLYNIPRSSVEAVIKDLQLVLDLPPG--NQLCSTL 66
L + Q L+ T+ E ++ + + + + + L
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 67 SGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYI 126
SGGQ +RVSIA L PD+++ DEPTS +DP L + + + +T+++ TH +
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEM 209
Query: 127 EEARQ 131
AR
Sbjct: 210 GFARH 214
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 80.8 bits (199), Expect = 2e-20
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLS 67
+G + Q AL+ +++E +F KL + + + + VL L ++ LS
Sbjct: 73 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 132
Query: 68 GGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIE 127
GGQ +RV+I TL+ P + +LDEP S +D L ++RL RT+I TH
Sbjct: 133 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 192
Query: 128 EARQ 131
EA
Sbjct: 193 EAMT 196
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 80.2 bits (198), Expect = 5e-20
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 13 MPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQL---VLDLPPG-----NQLCS 64
+ Q+ + T+ E V K +++LP G +
Sbjct: 96 LVQQDNILFSDTVKENILLGRPTATDEE--VVEAAKMANAHDFIMNLPQGYDTEVGERGV 153
Query: 65 TLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTH 124
LSGGQ +R+SIA L++P I++LDE TS +D + L+ L+ RT +I H
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAH 211
Query: 125 YIEEARQAD 133
+ AD
Sbjct: 212 RLSTITHAD 220
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 80.0 bits (197), Expect = 7e-20
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 12 FMPQEIALFEEFTISETFAFFSKLYNIP--------------RSSVEAVIKDLQLVLDLP 57
Q +E T+ E VE K L+ +
Sbjct: 83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 142
Query: 58 PGNQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKR 117
++ LSGGQ + V I L+ +P +IV+DEP +GV P LAH + ++ L
Sbjct: 143 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGI 201
Query: 118 TIIITTHYIEEARQ 131
T +I H ++
Sbjct: 202 TFLIIEHRLDIVLN 215
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 79.9 bits (197), Expect = 7e-20
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD---LQLVLDLPPG----- 59
+ + + Q + LF + + + R +E + + + + G
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYA--RTEEYSREQIEEAARMAYAMDFINKMDNGLDTII 146
Query: 60 NQLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTI 119
+ LSGGQ +R++IA LL I++LDE TS +D L+ L RT
Sbjct: 147 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTS 204
Query: 120 IITTHYIEEARQAD 133
++ H + QAD
Sbjct: 205 LVIAHRLSTIEQAD 218
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 76.3 bits (187), Expect = 1e-18
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGG 69
G + Q AL+ T E AF + + + ++++ +LD+ N LSG
Sbjct: 85 GMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144
Query: 70 QARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEA 129
Q +RV++A L+ P +++LDEP S +D + + + T+++ +H +
Sbjct: 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204
Query: 130 RQ 131
Sbjct: 205 FA 206
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 75.5 bits (185), Expect = 2e-18
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSG 68
+ F+ Q +LF + + F ++ I + V+ + + ++ TLSG
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--KRVLDTARDLKIEHLLDRNPLTLSG 130
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G+ +RV++A L+ +P I++LDEP S +DP + L+ L +K T++ TH E
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190
Query: 129 ARQ 131
AR
Sbjct: 191 ARI 193
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 75.3 bits (185), Expect = 4e-18
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKD--LQLVLDLPPG-----N 60
+ + QE +F ++ E A+ A +K + LP G +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146
Query: 61 QLCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTII 120
+ S LSGGQ + V++A L+ P +++LD+ TS +D + L R+++
Sbjct: 147 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVL 206
Query: 121 ITTHYIEEARQAD 133
+ T ++ QAD
Sbjct: 207 LITQHLSLVEQAD 219
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 71.1 bits (174), Expect = 1e-16
Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPG------NQ 61
+G + Q+ L +I + + + ++ + A + + +
Sbjct: 77 RQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 62 LCSTLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
+ LSGGQ +R++IA L+++P I++ DE TS +D H + ++++ RT+II
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVII 193
Query: 122 TTHYIEEARQAD 133
H + + AD
Sbjct: 194 IAHRLSTVKNAD 205
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 71.1 bits (174), Expect = 2e-16
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 8 SMLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLC---- 63
S +GF+ Q+ A+ Y + + ++ P
Sbjct: 76 SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 64 --STLSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIII 121
+SGGQ +R++IA L +P I++LDE T+ +D K L+ L RT ++
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLV 193
Query: 122 TTHYIEEARQAD 133
H + AD
Sbjct: 194 IAHRLSTIVDAD 205
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 65.7 bits (160), Expect = 1e-14
Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 11 GFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPP-GNQLCSTLSGG 69
++ Q+ + + + ++ D+ L L + + LSGG
Sbjct: 75 AYLSQQQTPPFATPVWHYLT-----LHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 70 QARRVSIAVTLLH-------SPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIIT 122
+ +RV +A +L + +++LDEP + +D K L+ L I+++
Sbjct: 130 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMS 188
Query: 123 THYIEEARQ 131
+H + +
Sbjct: 189 SHDLNHTLR 197
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 62.7 bits (152), Expect = 1e-13
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 9 MLGFMPQEIALFEEFTISETFAFFSKLYNIPRSSVEAVIKDLQLVLDLPPGNQLCSTLSG 68
+GF+PQ+ ALF ++ A+ + V + + + ++ + LSG
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVE-RVERDRRVREMAEKLGIAHLLDRKPARLSG 129
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G+ +RV++A L+ P +++LDEP S VD + L + I+ TH + E
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189
Query: 129 ARQ 131
A
Sbjct: 190 AAM 192
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 54.4 bits (129), Expect = 3e-10
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 71 ARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEAR 130
A R+++++ L +++LDEPT +D + R +I+ +H E
Sbjct: 213 AFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDEELKD 271
Query: 131 QAD 133
AD
Sbjct: 272 AAD 274
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 52.9 bits (125), Expect = 9e-10
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 69 GQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEE 128
G A R+++++ L +++LDEPT +D + R +I+ +H E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDEEL 346
Query: 129 ARQAD 133
AD
Sbjct: 347 KDAAD 351
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 41.5 bits (96), Expect = 5e-06
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 66 LSGGQARRVSIAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHY 125
+ +I++DE G L + F + ++ H ++ T
Sbjct: 82 ELAIPILERAYREAKKDRRKVIIIDEI--GKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139
Query: 126 IEEARQAD 133
+
Sbjct: 140 RDVHPLVK 147
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 38.2 bits (87), Expect = 1e-04
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 76 IAVTLLHSPDIIVLDEPTSGVDPLLAHYFWKYLNRLAHTDKRTIIITTHYIEEARQAD 133
A+ VLDE + +D Y+ R + D + I+ + ++D
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ-FIVISLKNTMFEKSD 403
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Clostridium pasteurianum, MOP II [TaxId: 1501]}
Length = 67
Score = 25.0 bits (55), Expect = 1.4
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 37 NIPRSSVEAVIKD---LQLVLDLPPGNQLCSTLSGGQARRVSIAV-----TLLHSPDIIV 88
N + V + K ++VL++ GN++ S +S + + ++ S D+++
Sbjct: 6 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMI 65
Query: 89 L 89
L
Sbjct: 66 L 66
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 68
Score = 24.2 bits (53), Expect = 2.2
Identities = 8/60 (13%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 37 NIPRSSVEAVIKD---LQLVLDLPPGNQLCSTLSGGQARRVSIAV-----TLLHSPDIIV 88
NI +V+ + ++ L L G ++ S ++ + + ++ + ++I+
Sbjct: 6 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVAELGLKPGASASAVIKASNVIL 65
>d1h9ra2 b.40.6.2 (A:200-261) C-terminal domain of
molybdate-dependent transcriptional regulator ModE
{Escherichia coli [TaxId: 562]}
Length = 62
Score = 23.8 bits (52), Expect = 2.6
Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 51 QLVLDLPPGNQLCSTLSGGQARRVSI---AVTLLHSPDIIV 88
++++ LP G LC+T+ +A + ++ +I+
Sbjct: 19 EVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVII 59
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), regulatory C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 74
Score = 23.4 bits (51), Expect = 4.5
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 36 YNIPRSSVEAVIKDL 50
Y+ PRS+++
Sbjct: 7 YDCPRSALKKATAIT 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.397
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,814
Number of extensions: 22390
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 33
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.3 bits)