Query psy17963
Match_columns 943
No_of_seqs 3 out of 5
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 18:52:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uxz_A Cellulase B; carbohydra 61.6 11 0.00039 31.8 5.1 34 62-95 52-91 (131)
2 2yro_A Galectin-8; GAL-BIND le 46.6 26 0.00088 31.1 5.1 34 97-135 113-146 (155)
3 3zsj_A Galectin-3; sugar bindi 41.5 15 0.0005 31.9 2.7 34 99-137 102-135 (138)
4 1x50_A Galectin-4; GAL-BIND le 40.3 48 0.0017 29.7 6.0 33 98-135 124-156 (164)
5 2dv6_A Nitrite reductase; elec 37.6 47 0.0016 32.1 5.8 74 78-161 341-420 (447)
6 2d6m_A Galectin-9, lectin, gal 35.7 44 0.0015 29.6 4.9 32 98-135 115-146 (159)
7 3kep_A Nucleoporin NUP145; nuc 35.7 12 0.00041 35.3 1.3 26 137-162 146-171 (174)
8 3nf5_A Nucleoporin NUP116; nuc 35.3 13 0.00043 34.8 1.3 27 137-163 135-161 (164)
9 1krr_A Galactoside O-acetyltra 35.3 33 0.0011 31.3 4.1 27 107-133 139-165 (203)
10 3i8t_A Galectin-4; S-type lect 34.1 32 0.0011 31.0 3.8 32 99-136 129-160 (164)
11 2ky8_A Methyl-CPG-binding doma 30.0 15 0.0005 30.2 0.7 68 50-139 1-68 (72)
12 2uxt_A Protein SUFI, SUFI; oxi 29.0 1.8E+02 0.006 29.0 8.5 52 76-133 347-406 (451)
13 3nz2_A Hexapeptide-repeat cont 28.6 31 0.0011 30.4 2.6 27 107-133 140-166 (195)
14 2xu9_A Laccase; oxidoreductase 27.8 1.8E+02 0.006 28.6 8.1 64 77-153 349-421 (439)
15 2pma_A Uncharacterized protein 27.6 70 0.0024 29.2 4.8 67 65-131 47-128 (146)
16 2wsu_A Putative fiber protein; 27.6 37 0.0013 33.5 3.3 32 98-137 131-162 (343)
17 4a69_C Nuclear receptor corepr 25.9 20 0.00069 30.1 0.9 24 1-30 9-32 (94)
18 3fh1_A Uncharacterized NTF2-li 25.1 51 0.0017 26.1 3.1 14 98-111 88-101 (129)
19 1zpu_A Iron transport multicop 24.5 2E+02 0.0069 29.3 8.2 30 77-110 371-405 (534)
20 3eb7_A Insecticidal delta-endo 24.1 61 0.0021 33.6 4.3 42 124-173 469-511 (589)
21 2wsu_A Putative fiber protein; 23.9 83 0.0028 31.1 5.0 34 97-135 287-320 (343)
22 1w9s_A BH0236 protein, BHCBM6; 23.3 1.1E+02 0.0037 25.9 5.0 30 65-94 61-97 (142)
23 3hjj_A Maltose O-acetyltransfe 23.1 57 0.002 28.4 3.3 27 107-133 142-168 (190)
24 2v4v_A GH59 galactosidase; hyd 22.7 1.6E+02 0.0053 24.5 5.8 19 76-94 64-87 (129)
25 2r0h_A CGL3 lectin; galectin-r 21.9 58 0.002 30.1 3.2 96 16-135 45-154 (164)
26 3t6v_A Laccase; beta barrel, o 21.1 2.4E+02 0.0081 28.7 7.9 65 78-153 376-452 (495)
27 1n08_A Putative riboflavin kin 20.5 1E+02 0.0035 28.3 4.5 65 120-192 76-143 (163)
28 1lm8_V VHL, VON hippel-lindau 20.3 97 0.0033 28.9 4.4 61 75-156 10-70 (160)
29 4ajy_V VON hippel-lindau disea 20.3 62 0.0021 30.4 3.1 43 99-155 30-72 (163)
No 1
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A*
Probab=61.62 E-value=11 Score=31.78 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=20.5
Q ss_pred CCccccccccCCCC--ceeEEee----ceEEEEEeecCCC
Q psy17963 62 KPEKDVMYNFAKPQ--TSIEIRV----PTVVSVQLENSGS 95 (943)
Q Consensus 62 kpekdvmynfakpq--tsieirv----ptvvsvqlensgs 95 (943)
....++.+..|.|. ..|+||+ |.+-.|.+.+.|.
T Consensus 52 ~G~y~~~~rvas~~~gg~i~v~~~~~g~~~g~~~vp~Tgg 91 (131)
T 1uxz_A 52 SGSYLIEYRVASQNGGGSLTFEEAGGAPVHGTIAIPATGG 91 (131)
T ss_dssp SEEEEEEEEEEESSCCEEEEEEETTSCSEEEEEEECCCSE
T ss_pred CCceEEEEEEECCCCCcEEEEEECCCCCEeeEEEeCCCCC
Confidence 33445555555543 5788888 4566677777663
No 2
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.56 E-value=26 Score=31.14 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=23.1
Q ss_pred CCCCcEEEEEEeecCCccccccccccceeeCcceEEecc
Q psy17963 97 LTNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMF 135 (943)
Q Consensus 97 ltngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmF 135 (943)
..||+|+.-|-.= +.|-.. -+.+.|.|||.|..+
T Consensus 113 ~VNg~~~~~F~hR----~~pl~~-I~~l~I~Gdv~l~~V 146 (155)
T 2yro_A 113 AVNGVHSLEYKHR----FKELSS-IDTLEINGDIHLLEV 146 (155)
T ss_dssp EETTEEEEEEECC----CSCGGG-CCEEEEEESEEEEEE
T ss_pred EECCEEEEEecCc----CCCHHH-CcEEEEeCCEEEEEE
Confidence 3589999888543 223233 356889999999866
No 3
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=41.48 E-value=15 Score=31.91 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.5
Q ss_pred CCcEEEEEEeecCCccccccccccceeeCcceEEecccc
Q psy17963 99 NGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMFDY 137 (943)
Q Consensus 99 ngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmFdy 137 (943)
||.|+.-|--=. .+-..| +.+.|.|||.|....+
T Consensus 102 ng~~~~~f~hR~----~~l~~i-~~l~i~Gdv~l~~v~~ 135 (138)
T 3zsj_A 102 NDAHLLQYNHRV----KKLNEI-SKLGISGDIDLTSASY 135 (138)
T ss_dssp TTEEEEEEECSS----CCGGGC-CEEEEEESEEEEEEEE
T ss_pred CCcEEEEecCCC----CCHHHc-cEEEEEceEEEEEEEE
Confidence 899988775422 122333 4489999999987643
No 4
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.32 E-value=48 Score=29.68 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCCcEEEEEEeecCCccccccccccceeeCcceEEecc
Q psy17963 98 TNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMF 135 (943)
Q Consensus 98 tngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmF 135 (943)
.||+|+.-|--= +.|-.. -+.+.|.|||.|...
T Consensus 124 VNg~~~~~F~hR----~~pl~~-I~~l~I~GDv~l~sV 156 (164)
T 1x50_A 124 ANGQHLFDFAHR----LSAFQR-VDTLEIQGDVTLSYV 156 (164)
T ss_dssp ESSSEEEEEECC----CGGGGG-CCEEEEEESCEEEEE
T ss_pred ECCEEEEEecCC----CCCHHH-CCEEEEeCCEEEEEE
Confidence 389999888643 222223 356889999999765
No 5
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=37.63 E-value=47 Score=32.15 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=34.9
Q ss_pred eEEeeceEEEEEeecCCCcCCCCcEEE--EEEeec--CCccccccccccceee--CcceEEecccccceeeeeeeeecce
Q psy17963 78 IEIRVPTVVSVQLENSGSSLTNGRHVI--VFWCIA--GSSLTNRRHIKTNVFI--GQDVEVDMFDYTAYVCMNVISGPWR 151 (943)
Q Consensus 78 ieirvptvvsvqlensgssltngrhvi--vfwcia--GSsLtnrrhikTnVfI--gqdVeVdmFdytayvcmNvisgpWr 151 (943)
|.++.-.+|.+.|-|.|....---|+. -||.|+ |..+.|....+..|.| |+.+.|.+- +.| .|.|-
T Consensus 341 ~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~dG~~~~~p~~~~dtv~l~pg~r~~i~~~------~~~--pG~~~ 412 (447)
T 2dv6_A 341 LYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSLGSVVSPPLIGVQTVSVPPGGATIVDFK------IDR--AGRYI 412 (447)
T ss_dssp EEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGGGCSSSCCEEEESEEEECTTEEEEEEEE------CCS--CEEEE
T ss_pred eEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcCCcccCCCcccccEEEECCCcEEEEEEE------CCC--CEEEE
Confidence 444444466666667664322111221 356554 4445444323445666 444443321 234 58887
Q ss_pred eeeeccCCCc
Q psy17963 152 FQVECASSQH 161 (943)
Q Consensus 152 FQvEcassqH 161 (943)
|- |--..|
T Consensus 413 ~h--ch~~~h 420 (447)
T 2dv6_A 413 LV--DHALSR 420 (447)
T ss_dssp EE--ESSGGG
T ss_pred EE--ecCcCc
Confidence 74 544444
No 6
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich, carbohydrate binding protein, sugar binding protein; HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A* 2d6n_A* 2d6p_A* 2d6o_X*
Probab=35.70 E-value=44 Score=29.64 Aligned_cols=32 Identities=3% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCcEEEEEEeecCCccccccccccceeeCcceEEecc
Q psy17963 98 TNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMF 135 (943)
Q Consensus 98 tngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmF 135 (943)
.||+|+.-|--=. |-..| +.+.|.|||.|...
T Consensus 115 Vng~~~~~F~hR~-----p~~~I-~~l~i~GDv~l~sV 146 (159)
T 2d6m_A 115 VNKKFFVQYQHRV-----PYHLV-DTIAVSGCLKLSFI 146 (159)
T ss_dssp ETTEEEEEEECSS-----CGGGC-CEEEEEESEEEEEE
T ss_pred ECCEEEEEecCCC-----ChHHc-cEEEEECCEEEEEE
Confidence 3899998886431 33333 56889999999876
No 7
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=35.69 E-value=12 Score=35.25 Aligned_cols=26 Identities=31% Similarity=0.696 Sum_probs=19.2
Q ss_pred ccceeeeeeeeecceeeeeccCCCce
Q psy17963 137 YTAYVCMNVISGPWRFQVECASSQHH 162 (943)
Q Consensus 137 ytayvcmNvisgpWrFQvEcassqHh 162 (943)
-+-||+-|.+||-|.|.|+.-...||
T Consensus 146 g~~FisYd~~tG~W~F~V~H~~~~~~ 171 (174)
T 3kep_A 146 EMNYISYNPFGGTWTFKVNHFEGHHH 171 (174)
T ss_dssp SSEEEEEETTTTEEEEEESCCC----
T ss_pred CCEEEEEeCCCcEEEEEEecccCccc
Confidence 35678889999999999998887776
No 8
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=35.34 E-value=13 Score=34.83 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=20.1
Q ss_pred ccceeeeeeeeecceeeeeccCCCcee
Q psy17963 137 YTAYVCMNVISGPWRFQVECASSQHHL 163 (943)
Q Consensus 137 ytayvcmNvisgpWrFQvEcassqHhl 163 (943)
-+-||+-|.+||-|.|.|+..-.-||-
T Consensus 135 g~~FvsYd~~tG~W~F~V~H~~~~~~~ 161 (164)
T 3nf5_A 135 HTHFESYDPASGTYCFTVDHALEGHHH 161 (164)
T ss_dssp TCEEEEEETTTTEEEEEESSTTC----
T ss_pred CCEEEEEeCCCcEEEEEEccccccccc
Confidence 456788899999999999988777763
No 9
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*
Probab=35.27 E-value=33 Score=31.30 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=18.8
Q ss_pred EeecCCccccccccccceeeCcceEEe
Q psy17963 107 WCIAGSSLTNRRHIKTNVFIGQDVEVD 133 (943)
Q Consensus 107 wciaGSsLtnrrhikTnVfIgqdVeVd 133 (943)
|.-+|+.+.+.-.|-.+++||.+..|.
T Consensus 139 ~IG~~a~I~~gv~IG~~~vIgagsvV~ 165 (203)
T 1krr_A 139 WIGSHVVINPGVTIGDNSVIGAGSIVT 165 (203)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EECCCCEEeCCeEECCCCEECCCCEEC
Confidence 666777777776777777777766664
No 10
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular recognition, sugar binding protein; HET: LBT; 2.10A {Mus musculus} PDB: 2dyc_A
Probab=34.07 E-value=32 Score=31.01 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCcEEEEEEeecCCccccccccccceeeCcceEEeccc
Q psy17963 99 NGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMFD 136 (943)
Q Consensus 99 ngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmFd 136 (943)
||.|+.-|--=. |-..|. .+.|.|||.|..+.
T Consensus 129 Ng~~~~~F~hR~-----pl~~I~-~l~V~GDv~l~sV~ 160 (164)
T 3i8t_A 129 NGNSFYEYGHRL-----PVQMVT-HLQVDGDLELQSIN 160 (164)
T ss_dssp TTEEEEEEECSS-----CGGGCC-EEEEEESEEEEEEE
T ss_pred CCeEEEEECCCC-----CHHHCC-EEEEECcEEEEEEE
Confidence 899988885432 333444 48999999998763
No 11
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=30.03 E-value=15 Score=30.22 Aligned_cols=68 Identities=24% Similarity=0.525 Sum_probs=44.3
Q ss_pred CCCcccccCCCCCCccccccccCCCCceeEEeeceEEEEEeecCCCcCCCCcEEEEEEeecCCccccccccccceeeCcc
Q psy17963 50 GSSKRDRMRYPAKPEKDVMYNFAKPQTSIEIRVPTVVSVQLENSGSSLTNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQD 129 (943)
Q Consensus 50 gsskrdrmrypakpekdvmynfakpqtsieirvptvvsvqlensgssltngrhvivfwciaGSsLtnrrhikTnVfIgqd 129 (943)
|++|+.|+--|.-|.. ..-++ -+-.+|. +.|+--|+|..-.|--+-+++.|+. +++.+
T Consensus 1 ~~~~~~~~~~p~Lp~G----------W~R~~--------~~R~~g~--s~~k~DvyY~sP~Gkr~RS~~ev~~--YL~~~ 58 (72)
T 2ky8_A 1 GSDKQGRTDCPALPPG----------WKKEE--------VIRKSGL--SAGKSDVYYFSPSGKKFRSKPQLAR--YLGNA 58 (72)
T ss_dssp --CCCSEEECSSSCTT----------CEEEE--------EECCSST--TTTCEEEEEECTTCCEEESHHHHHH--HHTTS
T ss_pred CCCccccccCCCCCCC----------CEEEE--------EEecCCC--CCCceEEEEECCCCCEeEcHHHHHH--HHhcC
Confidence 6778877776644321 11222 1234454 4688888888888988888887766 45668
Q ss_pred eEEecccccc
Q psy17963 130 VEVDMFDYTA 139 (943)
Q Consensus 130 VeVdmFdyta 139 (943)
+-+++||++.
T Consensus 59 l~~~~FdF~~ 68 (72)
T 2ky8_A 59 VDLSCFDFRT 68 (72)
T ss_dssp SCCTTCBTTT
T ss_pred CChhhcCCCC
Confidence 9999999875
No 12
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=28.98 E-value=1.8e+02 Score=28.97 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=32.7
Q ss_pred ceeEEeeceEEEEEeecCCCcCCCCcEEE-----EEEeec--CCcccc-ccccccceeeCcceEEe
Q psy17963 76 TSIEIRVPTVVSVQLENSGSSLTNGRHVI-----VFWCIA--GSSLTN-RRHIKTNVFIGQDVEVD 133 (943)
Q Consensus 76 tsieirvptvvsvqlensgssltngrhvi-----vfwcia--GSsLtn-rrhikTnVfIgqdVeVd 133 (943)
..+.++.-++|-+.+.|. ..|-| -||.+. |..+.+ ....|-.|.||+-+.|.
T Consensus 347 ~~~~~~~G~~~~~~l~N~------~~HP~HLHGh~F~Vl~~~G~~~~~~~p~~rDTv~vg~~~~i~ 406 (451)
T 2uxt_A 347 IDVTAQQGTWERWTVRAD------EPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELL 406 (451)
T ss_dssp CCEEEETTCEEEEEEEEE------EEEEEEETTCEEEEEEETTBCCCGGGSSCBSEEEEEEEEEEE
T ss_pred CcEEcCCCCEEEEEEECC------CCcCeEECCceEEEEeeCCcCCCcccCCCccEEEECCEEEEE
Confidence 357778888999888886 34554 577764 443221 24566777786655553
No 13
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*
Probab=28.55 E-value=31 Score=30.40 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=19.5
Q ss_pred EeecCCccccccccccceeeCcceEEe
Q psy17963 107 WCIAGSSLTNRRHIKTNVFIGQDVEVD 133 (943)
Q Consensus 107 wciaGSsLtnrrhikTnVfIgqdVeVd 133 (943)
|.-+|+.+.+...|-.++.||.+..|.
T Consensus 140 ~IG~~~~I~~gv~IG~~~vIgagsvV~ 166 (195)
T 3nz2_A 140 WIGGNVVINQGVTIGARSVVAANSVVN 166 (195)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EEcCCCEECCCCEECCCCEECCCCEEc
Confidence 667777777777777777777776664
No 14
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=27.79 E-value=1.8e+02 Score=28.64 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=37.4
Q ss_pred eeEEeeceEEEEEeecCCCcCCCCcEEE-----EEEeec--CCccccccccccceee--CcceEEecccccceeeeeeee
Q psy17963 77 SIEIRVPTVVSVQLENSGSSLTNGRHVI-----VFWCIA--GSSLTNRRHIKTNVFI--GQDVEVDMFDYTAYVCMNVIS 147 (943)
Q Consensus 77 sieirvptvvsvqlensgssltngrhvi-----vfwcia--GSsLtnrrhikTnVfI--gqdVeVdmFdytayvcmNvis 147 (943)
.+.++.-+++.+.+.|.+ ...|-| -||.+. |.... ....|-.|.| |+.|.|.+- .-| .
T Consensus 349 ~~~~~~g~~~~~~~~N~~----~~~HP~HLHG~~F~Vl~~~g~~~~-~p~~rDTv~v~p~~~v~i~f~------adn--p 415 (439)
T 2xu9_A 349 DLKGQAQTVEVWEVENQG----DMDHPFHLHVHPFQVLSVGGRPFP-YRAWKDVVNLKAGEVARLLVP------LRE--K 415 (439)
T ss_dssp CEEECTTCEEEEEEEECS----SSCEEEEESSCCBEEEEETTEECS-SCCCBSEEEECTTCEEEEEEE------CCS--C
T ss_pred ceecCCCCEEEEEEEcCC----CCCCCceeCCCcEEEEeeCCCCCC-CCCCeEEEEeCCCCEEEEEEE------cCC--C
Confidence 467778888888888863 455654 477765 22221 2345566777 555555432 223 5
Q ss_pred ecceee
Q psy17963 148 GPWRFQ 153 (943)
Q Consensus 148 gpWrFQ 153 (943)
|+|-|-
T Consensus 416 G~w~~H 421 (439)
T 2xu9_A 416 GRTVFH 421 (439)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 788763
No 15
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=27.58 E-value=70 Score=29.20 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=43.1
Q ss_pred cccccccCCCCceeEEeeceEEEEEeecCCCcC--------CCCcEEEEEEeecCC-------ccccccccccceeeCcc
Q psy17963 65 KDVMYNFAKPQTSIEIRVPTVVSVQLENSGSSL--------TNGRHVIVFWCIAGS-------SLTNRRHIKTNVFIGQD 129 (943)
Q Consensus 65 kdvmynfakpqtsieirvptvvsvqlensgssl--------tngrhvivfwciaGS-------sLtnrrhikTnVfIgqd 129 (943)
+-|-+.+..++..-.+--|.+-.+.+-+++..- ..-|.||-.|...|. .||+|.|+.-.+-||-+
T Consensus 47 ~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV~~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~ 126 (146)
T 2pma_A 47 PYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRD 126 (146)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEEEEEEEETTEEEEEEEEEECCCCCSCSEEECHH
T ss_pred cEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEEEEEEEECCEEEEEEEEEcCCCcCCCCEEechh
Confidence 345555555544444677777777777777543 577999998877675 58999999999998865
Q ss_pred eE
Q psy17963 130 VE 131 (943)
Q Consensus 130 Ve 131 (943)
..
T Consensus 127 ~L 128 (146)
T 2pma_A 127 AI 128 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=27.58 E-value=37 Score=33.52 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=23.4
Q ss_pred CCCcEEEEEEeecCCccccccccccceeeCcceEEecccc
Q psy17963 98 TNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMFDY 137 (943)
Q Consensus 98 tngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmFdy 137 (943)
.||+|+.-|..=. .--+.+.|+|||.|..+.+
T Consensus 131 Vng~~~~~F~hR~--------~~I~~l~V~Gdv~l~sV~~ 162 (343)
T 2wsu_A 131 VNGKPLVDFPQRL--------QGITRASLSGDLVFTRLTM 162 (343)
T ss_dssp ETTEEEEEEECCS--------CCCCEEEEEESEEEEEEEE
T ss_pred ECCEEEEEeeChh--------hcccEEEEECCEEEEEEEE
Confidence 3899999887543 2236688999999877643
No 17
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=25.94 E-value=20 Score=30.12 Aligned_cols=24 Identities=38% Similarity=0.822 Sum_probs=8.8
Q ss_pred CCCceeeccCCCceEEEEeeccCCCCcccc
Q psy17963 1 MPPMIVSADKSNFNVLFHYNFSSVNGLFKN 30 (943)
Q Consensus 1 mppmivsadksn~NV~~~~Nfsn~NGm~~N 30 (943)
+||||..+++. ...|-|.||++.+
T Consensus 9 IP~m~~d~~~~------~~~f~d~n~lv~d 32 (94)
T 4a69_C 9 IPPMLYDADQQ------RIKFINMNGLMAD 32 (94)
T ss_dssp -------------------CCBCTTSBBSC
T ss_pred CCCccCCHHHH------hheecccCCcccC
Confidence 69999987653 2467899998765
No 18
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=25.05 E-value=51 Score=26.10 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=11.4
Q ss_pred CCCcEEEEEEeecC
Q psy17963 98 TNGRHVIVFWCIAG 111 (943)
Q Consensus 98 tngrhvivfwciaG 111 (943)
.+|.+|++.|.+.|
T Consensus 88 ~~gd~v~~~~~~~~ 101 (129)
T 3fh1_A 88 VAGDRATIRWRYWM 101 (129)
T ss_dssp EETTEEEEEEEEEC
T ss_pred EcCCEEEEEEEEEC
Confidence 46889999998765
No 19
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=24.53 E-value=2e+02 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=21.3
Q ss_pred eeEEeeceEEEEEeecCCCcCCCCcEEE-----EEEeec
Q psy17963 77 SIEIRVPTVVSVQLENSGSSLTNGRHVI-----VFWCIA 110 (943)
Q Consensus 77 sieirvptvvsvqlensgssltngrhvi-----vfwcia 110 (943)
.+.++.-++|.+.+.|.+ .+.|-| -||.++
T Consensus 371 ~~~~~~g~~v~ivi~N~~----~~~HP~HLHGh~F~Vl~ 405 (534)
T 1zpu_A 371 TFILEKDEIVEIVLNNQD----TGTHPFHLHGHAFQTIQ 405 (534)
T ss_dssp EEEECTTCEEEEEEEECS----SSCEEEEETTCCEEEEE
T ss_pred EEEeCCCCEEEEEEeCCC----CCCCCeEecCCceEEEe
Confidence 466777788888898864 456665 477775
No 20
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=24.11 E-value=61 Score=33.63 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=26.7
Q ss_pred eeeCcceEEecccccceeeeeeeeecceeeeeccC-CCceeeeeecccccc
Q psy17963 124 VFIGQDVEVDMFDYTAYVCMNVISGPWRFQVECAS-SQHHLRIKYASQSEL 173 (943)
Q Consensus 124 VfIgqdVeVdmFdytayvcmNvisgpWrFQvEcas-sqHhlrikyasqsel 173 (943)
-|.|||+..-. .|-..+.+++.+.++. ....+||.||+....
T Consensus 469 g~TGGdlv~~~--------~~g~~~~~~~~~~~~~~~~YrvRIRYAs~~~~ 511 (589)
T 3eb7_A 469 HYLGGDPISFN--------SSGSTGVIRLNINSPLSQKYRVRIRYCSSVDF 511 (589)
T ss_dssp GGTTSCCEEES--------SSEECCCEEEEECSCTTCEEEEEEEEEESSCE
T ss_pred CCCCCcEEEec--------CCCceeEEEEEeCCCCCcEEEEEEEEEeCCCc
Confidence 36677776422 1223456777777653 458999999987654
No 21
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB: 2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Probab=23.93 E-value=83 Score=31.06 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=23.0
Q ss_pred CCCCcEEEEEEeecCCccccccccccceeeCcceEEecc
Q psy17963 97 LTNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMF 135 (943)
Q Consensus 97 ltngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmF 135 (943)
..||+|+.-|-.= +.|-..| +.+.|+|||.|..+
T Consensus 287 ~VNG~~~~~F~hR----~~pl~~I-~~l~I~GDv~l~~V 320 (343)
T 2wsu_A 287 LVDKQPLTQFQYR----LKELDQI-KYVHMFGHVVQTHL 320 (343)
T ss_dssp EETTEEEEEEECS----SCCGGGC-CEEEEEESEEEEEE
T ss_pred EECCEEEEEecCC----CCCHHhC-cEEEEeCCEEEEEE
Confidence 4589998888643 2222233 56889999999876
No 22
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A*
Probab=23.34 E-value=1.1e+02 Score=25.95 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=15.9
Q ss_pred cccccccCCCC--ceeEEee-----ceEEEEEeecCC
Q psy17963 65 KDVMYNFAKPQ--TSIEIRV-----PTVVSVQLENSG 94 (943)
Q Consensus 65 kdvmynfakpq--tsieirv-----ptvvsvqlensg 94 (943)
..+.+..+.|. ..||||+ |.+-.|.+.+.|
T Consensus 61 ~~~~~rvas~~~gg~iev~~d~~~G~~~gt~~v~~Tg 97 (142)
T 1w9s_A 61 SSIEVRVASDTPGGRIEIRTGSPTGTLLGDVQVPNTG 97 (142)
T ss_dssp EEEEEEEEESSSCEEEEEEESSTTSCEEEEEEECCCS
T ss_pred EEEEEEEEcCCCCeEEEEEECCCCCeEEEEEEeCCCC
Confidence 33444444433 4677776 235556666655
No 23
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*
Probab=23.08 E-value=57 Score=28.37 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=18.8
Q ss_pred EeecCCccccccccccceeeCcceEEe
Q psy17963 107 WCIAGSSLTNRRHIKTNVFIGQDVEVD 133 (943)
Q Consensus 107 wciaGSsLtnrrhikTnVfIgqdVeVd 133 (943)
|.-+|+.+.|..+|-.++.||.+..|.
T Consensus 142 ~IG~~~~I~~gv~IG~~~vIgagsvV~ 168 (190)
T 3hjj_A 142 WVGGGAIINPGVSIGDNAVIASGAVVT 168 (190)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEEC
T ss_pred EECCCCEECCCCEECCCCEECCCCEEC
Confidence 666777777777777777777666554
No 24
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum}
Probab=22.72 E-value=1.6e+02 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=10.5
Q ss_pred ceeEEee-----ceEEEEEeecCC
Q psy17963 76 TSIEIRV-----PTVVSVQLENSG 94 (943)
Q Consensus 76 tsieirv-----ptvvsvqlensg 94 (943)
..|+||+ |.+-.|.+.+.|
T Consensus 64 g~ievrlds~~G~~~g~~~v~~Tg 87 (129)
T 2v4v_A 64 GNIEIRLDSSTGTLIGTCPVAGTG 87 (129)
T ss_dssp EEEEEEESSTTSCEEEEEEECCCS
T ss_pred cEEEEEECCCCCeEEEEEEecCCC
Confidence 4677775 344455555554
No 25
>2r0h_A CGL3 lectin; galectin-related, sugar binding protein, chitotriose, chitooligosaccharides; HET: CTO; 1.90A {Coprinus cinereus} PDB: 2r0f_A*
Probab=21.88 E-value=58 Score=30.13 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=48.7
Q ss_pred EEEeeccCCCCccccCCCCCCCCCCCCccc---C----CCCCCCcccccCCCCCCccccccccCCCCceeEEeec-eEEE
Q psy17963 16 LFHYNFSSVNGLFKNGIGPESKPRPSTIST---P----RSHGSSKRDRMRYPAKPEKDVMYNFAKPQTSIEIRVP-TVVS 87 (943)
Q Consensus 16 ~~~~Nfsn~NGm~~NGIG~nsn~RPseIst---p----rshgsskrdrmrypakpekdvmynfakpqtsieirvp-tvvs 87 (943)
.|+-||-.+++ .|.+--|||.++=.. - ...|.-.|..+.+|-+|.... .|.|++- .-..
T Consensus 45 rF~INl~~g~~----DIalHfNPRF~e~~IV~NS~~~~g~WG~EER~~~~~PF~~G~~F---------~i~I~~~~~~F~ 111 (164)
T 2r0h_A 45 NTNVNLINAKG----DVLLHIGIRRRENAFVFNSIPYGESRGPEERIPLEGTFGDRRDP---------SITIFDHPDRYQ 111 (164)
T ss_dssp CEEEEEEETTS----CEEEEEEEETTTTEEEEEEECTTSCCCCCEEEECTTTSCSCSSC---------EEEEEECSSEEE
T ss_pred eEEEEeeeCCC----CEEEEEeeccCCCEEEECCcccCCeeChhhcccCCCCCCCCCcE---------EEEEEEeCCEEE
Confidence 45556655543 567777888875211 1 234555554333454443322 2444332 1111
Q ss_pred EEeecCCCcCCCCcEEEEEEeecCCccccccccccceeeCc------ceEEecc
Q psy17963 88 VQLENSGSSLTNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQ------DVEVDMF 135 (943)
Q Consensus 88 vqlensgssltngrhvivfwciaGSsLtnrrhikTnVfIgq------dVeVdmF 135 (943)
| ..||.|+.-|..=.+- +...|.-+|++++ +++|+++
T Consensus 112 V--------~vNg~~~~~F~hR~~~---~~~~i~y~~~~~~~~~~s~~l~v~~~ 154 (164)
T 2r0h_A 112 I--------MIDYKTVYYYKKRLEG---RCEKVSYKINEGQTPPFSDVLGVTVL 154 (164)
T ss_dssp E--------EETTEEEEEEECCSCS---CEEEEEEEECTTCCCSSCSEEEEEEE
T ss_pred E--------EECCEeEEEecCcCCC---CcceEEEEecCccccccccceeeeeh
Confidence 1 3489999888764332 1244555555444 4666666
No 26
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=21.14 E-value=2.4e+02 Score=28.72 Aligned_cols=65 Identities=23% Similarity=0.405 Sum_probs=32.0
Q ss_pred eEEeeceEEEEEeecCCCcCCCCcEEE-----EEEeecC--Ccccc--ccccccceeeC---cceEEecccccceeeeee
Q psy17963 78 IEIRVPTVVSVQLENSGSSLTNGRHVI-----VFWCIAG--SSLTN--RRHIKTNVFIG---QDVEVDMFDYTAYVCMNV 145 (943)
Q Consensus 78 ieirvptvvsvqlensgssltngrhvi-----vfwciaG--SsLtn--rrhikTnVfIg---qdVeVdmFdytayvcmNv 145 (943)
+.++.-.+|.+.|.|. .+.+.|-| -||.+++ ...-| ....+-.|.|+ +.+.|.+ +..|
T Consensus 376 ~~~~~g~~V~ivl~~n---~~~~~HP~HLHGh~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf------~adn- 445 (495)
T 3t6v_A 376 ISLPSNSTIEIALPAG---AAGGPHPFHLHGHDFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRF------CTDN- 445 (495)
T ss_dssp EEECTTCEEEEEEECC---SSSCCCEEEETTCCEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEE------ECCS-
T ss_pred EEecCCCEEEEEEccC---CCCCCcceeecCCcEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEE------EcCC-
Confidence 4555566777777641 23445544 4777643 22111 11223445554 3444432 2445
Q ss_pred eeecceee
Q psy17963 146 ISGPWRFQ 153 (943)
Q Consensus 146 isgpWrFQ 153 (943)
-|.|-|-
T Consensus 446 -PG~W~~H 452 (495)
T 3t6v_A 446 -PGPWFLH 452 (495)
T ss_dssp -CEEEEEE
T ss_pred -CeeEEEE
Confidence 4888875
No 27
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*
Probab=20.54 E-value=1e+02 Score=28.30 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=38.3
Q ss_pred cccceeeCcceEEecccccceeeeeeeeecc-eeeeeccCCCceeeeeec--ccccccccccchhhhcccchhccc
Q psy17963 120 IKTNVFIGQDVEVDMFDYTAYVCMNVISGPW-RFQVECASSQHHLRIKYA--SQSELKYASLSELKYASQSELKYA 192 (943)
Q Consensus 120 ikTnVfIgqdVeVdmFdytayvcmNvisgpW-rFQvEcassqHhlrikya--sqselkyaslselkyasqselkya 192 (943)
.+..+|||-|-.|++ . -..+|+|=- ||.+..-. .+++|.+- -..|.|+.|+.+|+-.-+.+...|
T Consensus 76 ~~gv~nIG~~PTf~~---~---~~~vEvhil~df~~dlYG--~~i~V~f~~~lR~E~kF~sle~L~~qI~~D~~~a 143 (163)
T 1n08_A 76 FPMVMSVGWNPYYKN---K---LRSAEVHLIERQGEDFYE--EIMRVIVLGYIRPELNYAGLDKLIEDIHTDIRVA 143 (163)
T ss_dssp EEEEEEEEECTTCSS---C---CEEEEEEETTCCSCCCTT--CEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCeECC---C---ceEEEEEEecCCCCccCC--CEEEEEEHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 456667776654443 1 234677777 77765433 34544432 356788888888876665555444
No 28
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=20.34 E-value=97 Score=28.88 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=34.4
Q ss_pred CceeEEeeceEEEEEeecCCCcCCCCcEEEEEEeecCCccccccccccceeeCcceEEecccccceeeeeeeeecceeee
Q psy17963 75 QTSIEIRVPTVVSVQLENSGSSLTNGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMFDYTAYVCMNVISGPWRFQV 154 (943)
Q Consensus 75 qtsieirvptvvsvqlensgssltngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmFdytayvcmNvisgpWrFQv 154 (943)
-.|..=++|+.|. +-|. -+|.|-|||.=..+-..+-.. +.=|+.+.++-| .||||.|-.
T Consensus 10 lrS~~s~~~~~V~--FvN~-----s~~~V~v~WIDy~G~~v~Y~~----L~PG~~~~q~TY----------~tHpWifrd 68 (160)
T 1lm8_V 10 LRSVNSREPSQVI--FCNR-----SPRVVLPVWLNFDGEPQPYPT----LPPGTGRRIHSY----------RGHLWLFRD 68 (160)
T ss_dssp SCCCCCCCEEEEE--EEEC-----SSSCEEEEEECTTSCEEECCC----BCTTEEEEEEEE----------TTCEEEEEE
T ss_pred ccCCCCCceEEEE--EEeC-----CCCeEEEEEECCCCCEEEeee----eCCCCEEeCCCc----------CCCcEEEEe
Confidence 3344445555443 4452 378999999644333222222 233555666666 689998876
Q ss_pred ec
Q psy17963 155 EC 156 (943)
Q Consensus 155 Ec 156 (943)
.-
T Consensus 69 ~~ 70 (160)
T 1lm8_V 69 AG 70 (160)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 29
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C*
Probab=20.34 E-value=62 Score=30.42 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=27.3
Q ss_pred CCcEEEEEEeecCCccccccccccceeeCcceEEecccccceeeeeeeeecceeeee
Q psy17963 99 NGRHVIVFWCIAGSSLTNRRHIKTNVFIGQDVEVDMFDYTAYVCMNVISGPWRFQVE 155 (943)
Q Consensus 99 ngrhvivfwciaGSsLtnrrhikTnVfIgqdVeVdmFdytayvcmNvisgpWrFQvE 155 (943)
-+|.|-|||.=.-+-..+=. .+.=|+.+.|+.| .||||.|--.
T Consensus 30 s~~~V~v~WIDy~G~~~~Y~----tL~PG~~~~~~TY----------~tHpWvfrD~ 72 (163)
T 4ajy_V 30 SPRVVLPVWLNFDGEPQPYP----TLPPGTGRRIHSY----------RGHLWLFRDA 72 (163)
T ss_dssp SSSCEEEEEECTTSCEEECC----CBCTTEEEEEEEE----------TTCEEEEEET
T ss_pred CCCeEEEEEECCCCCEEEee----eeCCCCeEEecCC----------CCCcEEEEec
Confidence 37899999975433333322 3334666677776 6888888744
Done!