RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17963
         (943 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 2.1
 Identities = 27/152 (17%), Positives = 39/152 (25%), Gaps = 66/152 (43%)

Query: 5   IVSA-------DKSNFN--------VLFHYNFSSVNGLFKNGIG-------PESKPRPST 42
           +V+A          +F         VLF              IG       P +   PS 
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFF-------------IGVRCYEAYPNTSLPPSI 323

Query: 43  ISTPRSHGSSKRDRM----RYPAKP-EKDVMY-NFAKPQTS-IEIRVPTVVSVQLENSGS 95
           +     +       M        +  +  V   N   P    +EI               
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI--------------- 368

Query: 96  SLTNGRHVIVFWCIAG--SSL----TNRRHIK 121
           SL NG   +V   ++G   SL       R  K
Sbjct: 369 SLVNGAKNLV---VSGPPQSLYGLNLTLRKAK 397


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.299    0.112    0.276 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,480,299
Number of extensions: 550803
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 6
Length of query: 943
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 840
Effective length of database: 3,825,930
Effective search space: 3213781200
Effective search space used: 3213781200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.1 bits)