Query psy17968
Match_columns 174
No_of_seqs 9 out of 11
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 18:58:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06630 Exonuc_VIII: Enteroba 25.2 33 0.00072 29.2 0.9 15 159-173 53-68 (182)
2 PRK13552 frdB fumarate reducta 20.3 44 0.00095 28.4 0.6 16 158-173 91-106 (239)
3 PRK08640 sdhB succinate dehydr 17.6 49 0.0011 28.3 0.4 16 158-173 96-111 (249)
4 PRK12386 fumarate reductase ir 15.9 60 0.0013 28.1 0.5 16 158-173 88-103 (251)
5 PLN00129 succinate dehydrogena 14.4 69 0.0015 28.4 0.5 16 158-173 130-145 (276)
6 PF13085 Fer2_3: 2Fe-2S iron-s 12.4 72 0.0016 24.6 0.0 15 159-173 90-104 (110)
7 PRK12575 succinate dehydrogena 11.7 96 0.0021 26.5 0.6 15 159-173 90-104 (235)
8 COG0479 FrdB Succinate dehydro 11.6 89 0.0019 27.3 0.3 15 159-173 88-102 (234)
9 TIGR00384 dhsB succinate dehyd 11.5 87 0.0019 25.7 0.2 15 159-173 83-97 (220)
10 PF06986 TraN: Type-1V conjuga 9.5 2.9E+02 0.0063 23.6 2.7 33 72-104 7-39 (248)
No 1
>PF06630 Exonuc_VIII: Enterobacterial exodeoxyribonuclease VIII; InterPro: IPR010584 This family consists of several Enterobacterial exodeoxyribonuclease VIII proteins.
Probab=25.23 E-value=33 Score=29.17 Aligned_cols=15 Identities=53% Similarity=0.826 Sum_probs=11.8
Q ss_pred hhcc-CcccccccccC
Q psy17968 159 AAVR-HLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~-~~~~~~~~~~~ 173 (174)
.||| ||||||||--|
T Consensus 53 kPvRt~~PVvndLP~E 68 (182)
T PF06630_consen 53 KPVRTNFPVVNDLPPE 68 (182)
T ss_pred cccccCCccccCCCCc
Confidence 4555 89999999765
No 2
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=20.27 E-value=44 Score=28.42 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=13.5
Q ss_pred hhhccCcccccccccC
Q psy17968 158 HAAVRHLPVVDDLKLE 173 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~~ 173 (174)
=+|.+|+||+.||-..
T Consensus 91 iePl~~fpVirDLvVD 106 (239)
T PRK13552 91 LMPLPVFKLIGDLSVN 106 (239)
T ss_pred EEECCCCCcceeCccc
Confidence 4789999999999764
No 3
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=17.61 E-value=49 Score=28.34 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=13.3
Q ss_pred hhhccCcccccccccC
Q psy17968 158 HAAVRHLPVVDDLKLE 173 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~~ 173 (174)
=.|.+|+|||.||-..
T Consensus 96 iePl~~fpVikDLvVD 111 (249)
T PRK08640 96 LEPMSTFPVVRDLQVD 111 (249)
T ss_pred EEECCCCCccccCcEE
Confidence 4689999999999654
No 4
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=15.92 E-value=60 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.0
Q ss_pred hhhccCcccccccccC
Q psy17968 158 HAAVRHLPVVDDLKLE 173 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~~ 173 (174)
=.|.+|+||+.||-..
T Consensus 88 iepl~~fpVikDLvVD 103 (251)
T PRK12386 88 VTPMRTFPVIRDLVTD 103 (251)
T ss_pred EccCCCCCccccceEE
Confidence 3688999999999653
No 5
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=14.44 E-value=69 Score=28.35 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.7
Q ss_pred hhhccCcccccccccC
Q psy17968 158 HAAVRHLPVVDDLKLE 173 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~~ 173 (174)
=.|.+|+||+.||-..
T Consensus 130 iePl~~fpVirDLvVD 145 (276)
T PLN00129 130 ITPLPHMFVIKDLVVD 145 (276)
T ss_pred EEECCCCCeeeecccc
Confidence 5789999999999764
No 6
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=12.43 E-value=72 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.5
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.|.+++||+.||-..
T Consensus 90 ePL~~fpVirDLvVD 104 (110)
T PF13085_consen 90 EPLPNFPVIRDLVVD 104 (110)
T ss_dssp EESTTSBEEETTEEE
T ss_pred EECCCCCcceeCcee
Confidence 688999999999653
No 7
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=11.72 E-value=96 Score=26.47 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=12.7
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.|.+++||+.||-..
T Consensus 90 ePl~~~pvikDLvvD 104 (235)
T PRK12575 90 RPLPGLPVVRDLIVD 104 (235)
T ss_pred eECCCCCccccceec
Confidence 588999999999654
No 8
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=11.60 E-value=89 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.4
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.|..|+||+.||-.+
T Consensus 88 ePL~~fpVIkDLVVD 102 (234)
T COG0479 88 EPLPNFPVIRDLVVD 102 (234)
T ss_pred EECCCCCceeeeeec
Confidence 588999999998653
No 9
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=11.49 E-value=87 Score=25.74 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=12.6
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.|.+|+||+.||-..
T Consensus 83 epl~~~pvikDLvvD 97 (220)
T TIGR00384 83 EPLPNLPVIKDLVVD 97 (220)
T ss_pred eeCCCCceeeeeeec
Confidence 688999999998654
No 10
>PF06986 TraN: Type-1V conjugative transfer system mating pair stabilisation; InterPro: IPR009726 Proteins in this entry include the TraN bacterial mating pair stabilisation proteins. TraN is thought to be required for the formation of stable mating aggregates during F-directed conjugation []. These proteins share a short conserved region (approximately 40 residues) which contains five conserved cysteine residues.
Probab=9.54 E-value=2.9e+02 Score=23.57 Aligned_cols=33 Identities=21% Similarity=0.491 Sum_probs=14.9
Q ss_pred CcccccCCCCCccccCCCCcccccCCCCccccc
Q psy17968 72 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 104 (174)
Q Consensus 72 s~~C~qap~S~~C~qap~s~~C~~Ap~s~~C~q 104 (174)
+..|++.+..+.=.--++++.|-+....-+|..
T Consensus 7 ~~~C~e~~~tr~InG~~v~~~CW~~~~ty~C~~ 39 (248)
T PF06986_consen 7 SETCTEGGGTRTINGVPVTRDCWKYQDTYQCQS 39 (248)
T ss_pred cCeEeCCCCCEEECCEEeChhhhcccceEEcCC
Confidence 444444444444444444444444444444443
Done!