Query psy17968
Match_columns 174
No_of_seqs 9 out of 11
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 18:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g6s_A Putative endonuclease/e 19.7 22 0.00074 26.6 -0.1 15 160-174 248-262 (267)
2 3lk2_T Carmil homolog, leucine 16.1 56 0.0019 22.1 1.3 15 160-174 10-24 (52)
3 3vr8_B Iron-sulfur subunit of 11.2 68 0.0023 26.9 0.7 15 159-173 124-138 (282)
4 4esy_A CBS domain containing m 10.8 45 0.0015 23.7 -0.5 14 159-172 134-147 (170)
5 3p5b_L Low density lipoprotein 9.7 2E+02 0.0068 23.7 3.0 16 75-90 14-29 (400)
6 3ghd_A A cystathionine beta-sy 8.2 63 0.0022 20.8 -0.5 13 160-172 22-34 (70)
7 3kwl_A Uncharacterized protein 6.9 1.2E+02 0.0041 27.1 0.5 15 158-172 99-113 (514)
8 1zwx_A SMCL, sphingomyelinase- 6.5 1.2E+02 0.004 22.9 0.2 15 159-173 287-301 (301)
9 2h88_B Succinate dehydrogenase 6.5 1.3E+02 0.0046 23.7 0.5 15 160-174 101-115 (252)
10 3kpb_A Uncharacterized protein 5.8 1.1E+02 0.0038 19.7 -0.2 9 161-169 93-101 (122)
No 1
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=19.68 E-value=22 Score=26.64 Aligned_cols=15 Identities=47% Similarity=0.702 Sum_probs=12.3
Q ss_pred hccCcccccccccCC
Q psy17968 160 AVRHLPVVDDLKLEH 174 (174)
Q Consensus 160 pv~~~~~~~~~~~~~ 174 (174)
+-.|+||+-+|.+||
T Consensus 248 ~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 248 LSDHNPQLADLELEH 262 (267)
T ss_dssp CCSBCCEEEEEEEC-
T ss_pred CCCcccEEEEEEecc
Confidence 467999999999886
No 2
>3lk2_T Carmil homolog, leucine-rich repeat-containing protein 16A; CAPZ, actin filaments, uncapping, actin-filament REG protein-protein complex; 2.20A {Gallus gallus}
Probab=16.08 E-value=56 Score=22.12 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.5
Q ss_pred hccCcccccccccCC
Q psy17968 160 AVRHLPVVDDLKLEH 174 (174)
Q Consensus 160 pv~~~~~~~~~~~~~ 174 (174)
.++.||-+...||||
T Consensus 10 ~~sELPseeg~kLeH 24 (52)
T 3lk2_T 10 FISELPSEEGKKLEH 24 (52)
T ss_dssp CCCCCCCSSCSCCCC
T ss_pred ccccCChHHHhhHHh
Confidence 378999999999998
No 3
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=11.19 E-value=68 Score=26.87 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.5
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.|.+|+|||.||-..
T Consensus 124 epL~~~pVikDLvvD 138 (282)
T 3vr8_B 124 YPLPHMFVIKDLVPD 138 (282)
T ss_pred ccCCCCceeeccccc
Confidence 588999999999653
No 4
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=10.77 E-value=45 Score=23.65 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=9.6
Q ss_pred hhccCccccccccc
Q psy17968 159 AAVRHLPVVDDLKL 172 (174)
Q Consensus 159 Apv~~~~~~~~~~~ 172 (174)
.-++|||||||=+|
T Consensus 134 ~~~~~lpVvd~g~l 147 (170)
T 4esy_A 134 HGIHRIPVVQDGVP 147 (170)
T ss_dssp TTCSEEEEEETTEE
T ss_pred cCCcEEEEEECCEE
Confidence 34678999987443
No 5
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=9.72 E-value=2e+02 Score=23.65 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=6.0
Q ss_pred cccCCCCCccccCCCC
Q psy17968 75 CRQAPTSSTCRQAPTS 90 (174)
Q Consensus 75 C~qap~S~~C~qap~s 90 (174)
|...+++-.|.+.+++
T Consensus 14 C~~~~~~y~C~C~~G~ 29 (400)
T 3p5b_L 14 CNDLKIGYECLCPDGF 29 (400)
T ss_dssp EEECSSSEEEECCTTE
T ss_pred eECCCCCeEEECCCCC
Confidence 3333333333333333
No 6
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=8.20 E-value=63 Score=20.85 Aligned_cols=13 Identities=8% Similarity=0.087 Sum_probs=9.3
Q ss_pred hccCccccccccc
Q psy17968 160 AVRHLPVVDDLKL 172 (174)
Q Consensus 160 pv~~~~~~~~~~~ 172 (174)
-+++|||+|+-+|
T Consensus 22 ~i~~~~V~d~~~l 34 (70)
T 3ghd_A 22 KAGSAVVMEGDEI 34 (70)
T ss_dssp TCSEEEEEETTEE
T ss_pred CCCEEEEEECCEE
Confidence 3678999987544
No 7
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=6.87 E-value=1.2e+02 Score=27.08 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.5
Q ss_pred hhhccCccccccccc
Q psy17968 158 HAAVRHLPVVDDLKL 172 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~ 172 (174)
=.|.+|+|||.||-.
T Consensus 99 iePl~~~pvikDLvv 113 (514)
T 3kwl_A 99 LDPLSKRYALKDLMI 113 (514)
T ss_dssp EECSCSTTEEETTEE
T ss_pred EEECCCCccccccee
Confidence 368899999999954
No 8
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=6.48 E-value=1.2e+02 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.206 Sum_probs=10.9
Q ss_pred hhccCcccccccccC
Q psy17968 159 AAVRHLPVVDDLKLE 173 (174)
Q Consensus 159 Apv~~~~~~~~~~~~ 173 (174)
.+=.|+||+-+|+++
T Consensus 287 ~~SDH~Pv~a~l~~~ 301 (301)
T 1zwx_A 287 DFSDHYPVVGFTDNN 301 (301)
T ss_dssp CSSSSCCEEEEEC--
T ss_pred CCCCCccEEEEEecC
Confidence 466899999988874
No 9
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=6.45 E-value=1.3e+02 Score=23.68 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=0.0
Q ss_pred hccCcccccccccCC
Q psy17968 160 AVRHLPVVDDLKLEH 174 (174)
Q Consensus 160 pv~~~~~~~~~~~~~ 174 (174)
|..|+||+.||-.+.
T Consensus 101 pl~~~pvikDLvvD~ 115 (252)
T 2h88_B 101 PLPHMYVVKDLVPDL 115 (252)
T ss_dssp CSTTCBEEETTEECC
T ss_pred cccCCCccccceecc
No 10
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=5.80 E-value=1.1e+02 Score=19.71 Aligned_cols=9 Identities=56% Similarity=1.003 Sum_probs=0.0
Q ss_pred ccCcccccc
Q psy17968 161 VRHLPVVDD 169 (174)
Q Consensus 161 v~~~~~~~~ 169 (174)
+++|||||+
T Consensus 93 ~~~l~Vvd~ 101 (122)
T 3kpb_A 93 ISGVPVVDD 101 (122)
T ss_dssp CSEEEEECT
T ss_pred CCeEEEECC
Done!