Query psy17968
Match_columns 174
No_of_seqs 9 out of 11
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 18:58:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jr1a4 d.37.1.1 (A:113-232) T 15.7 15 0.0011 23.8 0.0 10 160-169 93-102 (120)
2 d1nekb2 d.15.4.2 (B:1-106) Suc 15.7 18 0.0013 24.7 0.4 14 158-171 91-104 (106)
3 d1kf6b2 d.15.4.2 (B:1-105) Fum 15.2 19 0.0014 24.6 0.5 15 158-172 90-104 (105)
4 d1akoa_ d.151.1.1 (A:) DNA-rep 14.3 18 0.0013 23.3 0.1 12 160-171 256-267 (268)
5 d2ouxa2 d.37.1.1 (A:136-262) M 14.0 16 0.0012 23.9 -0.2 12 158-169 93-104 (127)
6 d2bs2b2 d.15.4.2 (B:1-106) Fum 12.1 25 0.0018 24.1 0.3 13 159-171 92-104 (106)
7 d2yvxa2 d.37.1.1 (A:132-275) M 11.7 21 0.0015 23.8 -0.2 11 159-169 94-104 (144)
8 d1y6ia2 a.261.1.1 (A:83-233) M 11.2 34 0.0025 25.0 0.8 14 157-170 118-131 (151)
9 d2d4za3 d.37.1.1 (A:527-606,A: 10.4 25 0.0018 22.7 -0.2 12 159-170 40-51 (160)
10 d1z3xa2 a.261.1.1 (A:88-235) G 10.2 39 0.0028 24.5 0.8 14 157-170 118-131 (148)
No 1
>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=15.70 E-value=15 Score=23.83 Aligned_cols=10 Identities=30% Similarity=0.684 Sum_probs=5.6
Q ss_pred hccCcccccc
Q psy17968 160 AVRHLPVVDD 169 (174)
Q Consensus 160 pv~~~~~~~~ 169 (174)
=++||||||+
T Consensus 93 ~i~~lpVVd~ 102 (120)
T d1jr1a4 93 KKGKLPIVNE 102 (120)
T ss_dssp C---CEEEET
T ss_pred CccEEEEEcC
Confidence 4678999976
No 2
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.67 E-value=18 Score=24.66 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=11.7
Q ss_pred hhhccCcccccccc
Q psy17968 158 HAAVRHLPVVDDLK 171 (174)
Q Consensus 158 ~Apv~~~~~~~~~~ 171 (174)
=.|.+|+||+.||-
T Consensus 91 IePL~~~pvikDLv 104 (106)
T d1nekb2 91 IRPLPGLPVIRDLV 104 (106)
T ss_dssp EECCSSSBEEETTE
T ss_pred EEECCCCCccccCC
Confidence 36889999999984
No 3
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.20 E-value=19 Score=24.56 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.2
Q ss_pred hhhccCccccccccc
Q psy17968 158 HAAVRHLPVVDDLKL 172 (174)
Q Consensus 158 ~Apv~~~~~~~~~~~ 172 (174)
=.|..|+||+.||-.
T Consensus 90 iePl~~~pVikDLvV 104 (105)
T d1kf6b2 90 VEALANFPIERDLVV 104 (105)
T ss_dssp EECCTTSCEEETTEE
T ss_pred EEECCCCCccccCCc
Confidence 368899999999853
No 4
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=14.28 E-value=18 Score=23.32 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=9.7
Q ss_pred hccCcccccccc
Q psy17968 160 AVRHLPVVDDLK 171 (174)
Q Consensus 160 pv~~~~~~~~~~ 171 (174)
|=.|+||+-|||
T Consensus 256 ~SDH~PV~a~~~ 267 (268)
T d1akoa_ 256 PSDHAPVWATFR 267 (268)
T ss_dssp CCSBCCEEEEEC
T ss_pred CCCcccEEEEEE
Confidence 468999998876
No 5
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=14.04 E-value=16 Score=23.94 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=8.8
Q ss_pred hhhccCcccccc
Q psy17968 158 HAAVRHLPVVDD 169 (174)
Q Consensus 158 ~Apv~~~~~~~~ 169 (174)
.--.++|||||+
T Consensus 93 ~~~~~~lPVVD~ 104 (127)
T d2ouxa2 93 DYDFLAVPVTDY 104 (127)
T ss_dssp HHTCSEEEEECT
T ss_pred HhCCEEEEEEeC
Confidence 345778999975
No 6
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Probab=12.14 E-value=25 Score=24.12 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=11.0
Q ss_pred hhccCcccccccc
Q psy17968 159 AAVRHLPVVDDLK 171 (174)
Q Consensus 159 Apv~~~~~~~~~~ 171 (174)
.|.+++||+.||-
T Consensus 92 ePl~~~pVIkDLv 104 (106)
T d2bs2b2 92 LPLPAFKLIKDLS 104 (106)
T ss_dssp ECCTTSEEEETTE
T ss_pred EECCCCCccccCC
Confidence 4788999999984
No 7
>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=11.73 E-value=21 Score=23.84 Aligned_cols=11 Identities=45% Similarity=0.643 Sum_probs=8.2
Q ss_pred hhccCcccccc
Q psy17968 159 AAVRHLPVVDD 169 (174)
Q Consensus 159 Apv~~~~~~~~ 169 (174)
-=++||||||+
T Consensus 94 ~~~~~lPVVd~ 104 (144)
T d2yvxa2 94 YDFTVLPVVDE 104 (144)
T ss_dssp SCCSEEEEECS
T ss_pred cCCCEEEEEeE
Confidence 34678999986
No 8
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=11.25 E-value=34 Score=24.99 Aligned_cols=14 Identities=36% Similarity=0.740 Sum_probs=11.7
Q ss_pred hhhhccCccccccc
Q psy17968 157 IHAAVRHLPVVDDL 170 (174)
Q Consensus 157 ~~Apv~~~~~~~~~ 170 (174)
++||.-|||++.-|
T Consensus 118 l~AP~GHLP~~~~l 131 (151)
T d1y6ia2 118 LSAPQGHLPLLNQL 131 (151)
T ss_dssp TTSCTTCCSCCCCT
T ss_pred CCCCCCCCCccchh
Confidence 47999999998755
No 9
>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.37 E-value=25 Score=22.69 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.3
Q ss_pred hhccCccccccc
Q psy17968 159 AAVRHLPVVDDL 170 (174)
Q Consensus 159 Apv~~~~~~~~~ 170 (174)
.-++||||||+-
T Consensus 40 ~~~~~~PVvd~~ 51 (160)
T d2d4za3 40 TKLKFFPFVDTP 51 (160)
T ss_dssp CCCSEEEEESCT
T ss_pred cCCCcccccccc
Confidence 457899999864
No 10
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.18 E-value=39 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=11.4
Q ss_pred hhhhccCccccccc
Q psy17968 157 IHAAVRHLPVVDDL 170 (174)
Q Consensus 157 ~~Apv~~~~~~~~~ 170 (174)
++||.-|||++.-|
T Consensus 118 l~AP~GHLP~~~~l 131 (148)
T d1z3xa2 118 LSAPRGHLPLTNQL 131 (148)
T ss_dssp TTSCTTCCSCCCCT
T ss_pred CCCCCCCCCcCCcc
Confidence 47999999997654
Done!