RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17968
(174 letters)
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 32.9 bits (75), Expect = 0.065
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 43 PTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTC 102
P S T +++ ++ Q+PT T +T + S+T T+S
Sbjct: 758 PASGT--GTSITTS---GTFTAEVPQSPT-------KTETTLSYSAYSNTSILIETTSV- 804
Query: 103 RQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSSTCRQAPTSST 146
T + + T+S+ T+S Q TS+T +P+ +T
Sbjct: 805 --VITKTVTQTQTTTSSPSPTQTTSP-TQTSTSTTTTTSPSQTT 845
Score = 31.4 bits (71), Expect = 0.26
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 52 PTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTC 111
P S T +++ ++ Q+PT T +T + S+T T+S
Sbjct: 758 PASGT--GTSITTS---GTFTAEVPQSPT-------KTETTLSYSAYSNTSILIETTSV- 804
Query: 112 RQAPTSSTCRQAPTSSTCRQVPTSSTCRQAPTSSTGRQAPTSST 155
T + + T+S+ T+S Q TS+T +P+ +T
Sbjct: 805 --VITKTVTQTQTTTSSPSPTQTTSP-TQTSTSTTTTTSPSQTT 845
>gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family. The model
describes Niemann-Pick C type protein in eukaryotes. The
defective protein has been associated with Niemann-Pick
disease which is described in humans as autosomal
recessive lipidosis. It is characterized by the
lysosomal accumulation of unestrified cholesterol. It is
an integral membrane protein, which indicates that this
protein is most likely involved in cholesterol transport
or acts as some component of cholesterol homeostasis
[Transport and binding proteins, Other].
Length = 1204
Score = 32.1 bits (73), Expect = 0.14
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 114 APTSSTCRQAPTSSTCRQVPTSSTCRQAPTSSTGRQAPTSSTYIHAAVRHLP 165
+P SS C + T+ T P S R A SS + P+++ + +LP
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRPSTTQFK----EYLP 957
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 43
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 15 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 52
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 24 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 61
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 33 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 70
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 42 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 79
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 51 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 88
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 60 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 97
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 69 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 106
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 78 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 115
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 87 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 124
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
Score = 27.5 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 96 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVP 133
+P SS C + T+ T P S R A SS + P
Sbjct: 910 SPQSSCCCRKFTNGTFCNGPDPSCFRCADLSSNAQGRP 947
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 30.5 bits (68), Expect = 0.51
Identities = 20/118 (16%), Positives = 37/118 (31%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 65
A T S+ ++ T A S + +T T ++ ++ T
Sbjct: 303 AVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG 362
Query: 66 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQA 123
P + P + + SST T++ + ++ P S T R A
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDA 420
Score = 29.3 bits (65), Expect = 1.2
Identities = 20/118 (16%), Positives = 38/118 (32%)
Query: 24 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 83
A T S+ ++ T A S + +T T ++ ++ T
Sbjct: 303 AVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG 362
Query: 84 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSSTCRQA 141
P + P + + SST T++ + ++ +P S T R A
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDA 420
Score = 27.4 bits (60), Expect = 4.4
Identities = 18/114 (15%), Positives = 35/114 (30%)
Query: 42 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 101
A T S+ ++ T A S + +T T ++ ++ T
Sbjct: 303 AVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG 362
Query: 102 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSSTCRQAPTSSTGRQAPTSST 155
P + P + + SST T++ + ++ P S T
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPT 416
Score = 27.4 bits (60), Expect = 4.4
Identities = 16/101 (15%), Positives = 30/101 (29%)
Query: 5 QAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 64
A S + +T T ++ ++ T P + P
Sbjct: 320 SAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPM 379
Query: 65 TCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQA 105
+ + SST T++ + ++ P S T R A
Sbjct: 380 STTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTSRDA 420
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 29.2 bits (65), Expect = 0.91
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 54 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 113
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 114 APTSSTCRQAPTSSTCRQVPT 134
P SST + P S T +QVPT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 68
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 69 APTSSTCRQAPTSSTCRQAPT 89
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 18 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 77
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 78 APTSSTCRQAPTSSTCRQAPT 98
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 27 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 86
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 87 APTSSTCRQAPTSSTCRQAPT 107
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 36 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 95
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 96 APTSSTCRQAPTSSTCRQAPT 116
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 45 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 104
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 105 APTSSTCRQAPTSSTCRQAPT 125
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.8 bits (64), Expect = 1.4
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 63 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 122
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 123 APTSSTCRQVPTSSTCRQAPT 143
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
Score = 28.4 bits (63), Expect = 1.7
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 72 SSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQ 131
+T QA ++T + T Q+ ST +AP S P ST +AP +
Sbjct: 21 ITTTTQAANATT--PSSTKVEAPQSTPPSTKVEAPQSKPNATTP-PSTKVEAPQQTPNAT 77
Query: 132 VPTSSTCRQAPTSSTGRQAPT 152
P SST + P S T +Q PT
Sbjct: 78 TP-SSTKVETPQSPTTKQVPT 97
>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 113
Score = 28.2 bits (64), Expect = 1.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 161 VRHLPVVDDLKL 172
RHLPVVD KL
Sbjct: 90 FRHLPVVDGGKL 101
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.1 bits (65), Expect = 1.4
Identities = 19/127 (14%), Positives = 40/127 (31%)
Query: 25 PTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTC 84
P S P ++ + AP ++ A + AP ++ +A ++
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 85 RQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSSTCRQAPTS 144
R++P A +S + + P ++ R V ++ A +
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Query: 145 STGRQAP 151
AP
Sbjct: 485 PAAAPAP 491
Score = 27.9 bits (62), Expect = 3.4
Identities = 16/120 (13%), Positives = 37/120 (30%)
Query: 5 QAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 64
P ++ + AP ++ A + AP ++ +A ++ R++P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 65 TCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAP 124
A +S + + P ++ R ++ A + AP
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAP 491
Score = 27.5 bits (61), Expect = 3.8
Identities = 17/127 (13%), Positives = 38/127 (29%)
Query: 16 PTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTC 75
P S P ++ + AP ++ A + AP ++ +A ++
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 76 RQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTS 135
R++P A +S + + P ++ R ++ +
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Query: 136 STCRQAP 142
AP
Sbjct: 485 PAAAPAP 491
Score = 26.8 bits (59), Expect = 7.2
Identities = 17/127 (13%), Positives = 38/127 (29%)
Query: 7 PTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTC 66
P S P ++ + AP ++ A + AP ++ +A ++
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424
Query: 67 RQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTS 126
R++P A +S + + P ++ R ++ A +
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
Query: 127 STCRQVP 133
P
Sbjct: 485 PAAAPAP 491
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.1 bits (65), Expect = 1.5
Identities = 22/150 (14%), Positives = 33/150 (22%), Gaps = 7/150 (4%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 65
P P + + A S + P+ P +
Sbjct: 2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVL 2812
Query: 66 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPT 125
A A PTS+ P AP R+ P+
Sbjct: 2813 APAAALPPAASPAGPLPP----PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPS 2868
Query: 126 SSTCRQVPTSSTCRQAPTSSTGRQAPTSST 155
S + + P R A + ST
Sbjct: 2869 RSP---AAKPAAPARPPVRRLARPAVSRST 2895
Score = 28.8 bits (64), Expect = 1.7
Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 10/145 (6%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 65
P + AP + R+ + A S + P+ P + A
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAV---ASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821
Query: 66 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPT 125
A PTS+ P AP R+ P+ S A
Sbjct: 2822 ASPAGPLPP----PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP---AAK 2874
Query: 126 SSTCRQVPTSSTCRQAPTSSTGRQA 150
+ + P R A + ST A
Sbjct: 2875 PAAPARPPVRRLARPAVSRSTESFA 2899
Score = 28.4 bits (63), Expect = 2.2
Identities = 22/160 (13%), Positives = 32/160 (20%), Gaps = 7/160 (4%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 65
P + P P P + + A S +
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794
Query: 66 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPT 125
P+ P + A A PTS+ P
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP----PTSAQPTAPPPPPGPPPPSL 2850
Query: 126 SSTCRQVPTSSTCRQAPTSSTGRQAPTSSTYIHAAVRHLP 165
P R+ P+ S A + VR L
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSP---AAKPAAPARPPVRRLA 2887
Score = 27.6 bits (61), Expect = 4.2
Identities = 23/156 (14%), Positives = 32/156 (20%), Gaps = 4/156 (2%)
Query: 15 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSST 74
P + P P P + + A S +
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES 2794
Query: 75 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPT 134
P+ P + A A PTS+ P
Sbjct: 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP----PTSAQPTAPPPPPGPPPPSL 2850
Query: 135 SSTCRQAPTSSTGRQAPTSSTYIHAAVRHLPVVDDL 170
AP R+ P+ S A P V L
Sbjct: 2851 PLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886
Score = 27.6 bits (61), Expect = 5.2
Identities = 31/163 (19%), Positives = 45/163 (27%), Gaps = 4/163 (2%)
Query: 4 RQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTS 63
R+ P+ S A + + P R A + ST A + P
Sbjct: 2864 RRPPSRSP---AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920
Query: 64 STCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQA 123
P P APT+ A S P + +
Sbjct: 2921 PQPPPPPQPQPPPPPPPRPQPPLAPTTDP-AGAGEPSGAVPQPWLGALVPGRVAVPRFRV 2979
Query: 124 PTSSTCRQVPTSSTCRQAPTSSTGRQAPTSSTYIHAAVRHLPV 166
P + R+ P SST S + + SS +H PV
Sbjct: 2980 PQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPV 3022
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 28.6 bits (63), Expect = 1.6
Identities = 32/153 (20%), Positives = 54/153 (35%), Gaps = 6/153 (3%)
Query: 8 TSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCR--QAPTSST 65
T S + S+ + PT R A + T ++ T + +AP ++
Sbjct: 25 TQSVKAEKIQSTKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNE 84
Query: 66 CRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTS--STCRQA 123
+ + + P + S+T AP + S+T + T+ ST
Sbjct: 85 EKTSASKIEKISQPKQEEQKSLNISAT--PAPKQEQSQTTTESTTPKTKVTTPPSTNTPQ 142
Query: 124 PTSSTCRQVPTSSTCRQAPTSSTGRQAPTSSTY 156
P ST P S T +QA T T + + Y
Sbjct: 143 PMQSTKSDTPQSPTIKQAQTDMTPKYEDLRAYY 175
Score = 28.6 bits (63), Expect = 2.0
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 5 QAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTS- 63
+AP ++ + + + P + S+T AP + S+T + T+
Sbjct: 78 KAPNTNEEKTSASKIEKISQPKQEEQKSLNISAT--PAPKQEQSQTTTESTTPKTKVTTP 135
Query: 64 -STCRQAPTSSTCRQAPTSSTCRQAPTSST 92
ST P ST P S T +QA T T
Sbjct: 136 PSTNTPQPMQSTKSDTPQSPTIKQAQTDMT 165
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 26.5 bits (58), Expect = 9.2
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 87 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSSTCRQAPTSST 146
A +SS+ P+SS+ +P+SST TS + SS+ +++T TS
Sbjct: 7 AASSSSSLLLPSSSS--SSPSSSTFSFKSTSGKLKSLTLSSSFLSPFSTTT---TSTSQR 61
Query: 147 GRQAPT 152
R++ T
Sbjct: 62 RRRSFT 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.111 0.340
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,163,405
Number of extensions: 522476
Number of successful extensions: 1623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1119
Number of HSP's successfully gapped: 268
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)