RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17968
(174 letters)
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 29.9 bits (68), Expect = 0.20
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 161 VRHLPVVDDLKL 172
VRHLPV+DD K+
Sbjct: 105 VRHLPVLDDGKV 116
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 28.7 bits (65), Expect = 0.49
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 161 VRHLPVVDD 169
+RHLPVVDD
Sbjct: 98 IRHLPVVDD 106
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 28.8 bits (65), Expect = 0.52
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 161 VRHLPVVDDLKL 172
+RHLPV+D KL
Sbjct: 109 MRHLPVLDGGKL 120
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 28.7 bits (65), Expect = 0.54
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 161 VRHLPVVDDLKL 172
VR +PV+ + +L
Sbjct: 105 VRRVPVISEHRL 116
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 28.4 bits (64), Expect = 0.83
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 161 VRHLPVVDDLKL 172
RH+PV ++ +L
Sbjct: 124 FRHVPVEENGRL 135
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 28.0 bits (63), Expect = 1.1
Identities = 2/12 (16%), Positives = 9/12 (75%)
Query: 161 VRHLPVVDDLKL 172
++H+ + ++ K+
Sbjct: 103 IKHILIEEEGKI 114
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 27.5 bits (62), Expect = 1.4
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 161 VRHLPVVDDLKL 172
V L V +D ++
Sbjct: 96 VWRLLVEEDDEI 107
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 27.8 bits (62), Expect = 2.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 6 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 64
+ CR A S C + +S T+ST AP+ + T+S
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
Score = 27.8 bits (62), Expect = 2.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 24 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 82
+ CR A S C + +S T+ST AP+ + T+S
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
Score = 27.8 bits (62), Expect = 2.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 42 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 100
+ CR A S C + +S T+ST AP+ + T+S
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
Score = 27.8 bits (62), Expect = 2.2
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 60 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 118
+ CR A S C + +S T+ST AP+ + T+S
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
Score = 26.3 bits (58), Expect = 7.1
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 78 APTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQVPTSS 136
+ CR A S C + +S T+ST AP+ + T+S
Sbjct: 344 SSELYLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
Score = 25.9 bits (57), Expect = 8.6
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 1 STCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSSTCRQAPTSS 55
CR A S C + +S T+ST AP+ + T+S
Sbjct: 348 YLCRSAYGSGYCLKDSSS--HTSYTTTSTVTAAPSGYSATTMAADLATAFGLTAS 400
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 26.8 bits (60), Expect = 2.6
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 161 VRHLPVVDD 169
+RH+ VV+
Sbjct: 101 IRHVVVVNK 109
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 26.6 bits (59), Expect = 3.8
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 161 VRHLPVVDD 169
+ VVDD
Sbjct: 106 LERCAVVDD 114
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 4.1
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 157 IHAAVRHLPVVDDLKLE 173
IHA L +D L
Sbjct: 101 IHALAAKLLQENDTTLV 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.111 0.340
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,174,180
Number of extensions: 107941
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 139
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.5 bits)