RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17968
         (174 letters)



>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398
           {Nitrosomonas europaea [TaxId: 915]}
          Length = 127

 Score = 28.2 bits (62), Expect = 0.32
 Identities = 9/12 (75%), Positives = 11/12 (91%)

Query: 161 VRHLPVVDDLKL 172
           VRHLPV+DD K+
Sbjct: 101 VRHLPVLDDGKV 112


>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 123

 Score = 24.8 bits (53), Expect = 4.5
 Identities = 5/12 (41%), Positives = 9/12 (75%)

Query: 161 VRHLPVVDDLKL 172
           VR +PV+ + +L
Sbjct: 98  VRRVPVISEHRL 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.111    0.340 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,049
Number of extensions: 25067
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 52
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)