BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1797
         (393 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
          Length = 133

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 78/93 (83%)

Query: 193 DWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVL 252
           DW L +P WTGR+R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+
Sbjct: 35  DWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVI 94

Query: 253 RIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHF 285
           RI+D +GR AFIG+GF+DR D+FD NV+LQDHF
Sbjct: 95  RIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHF 127



 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 69/81 (85%)

Query: 1   MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
           +R+ +K K   +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47  LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106

Query: 61  GLGFSDRSDSFDLNVALQDHF 81
           G+GF+DR D+FD NV+LQDHF
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHF 127



 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 31/45 (68%)

Query: 313 ETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNVALQDHF 357
           ET+  + +  V     G GR AFIG+GF+DR D+FD NV+LQDHF
Sbjct: 83  ETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHF 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,374,344
Number of Sequences: 62578
Number of extensions: 221484
Number of successful extensions: 445
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 6
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)