Query psy1797
Match_columns 393
No_of_seqs 259 out of 371
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 19:00:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2500|consensus 100.0 5.1E-71 1.1E-75 517.5 17.8 193 1-195 46-251 (253)
2 KOG2500|consensus 100.0 5.5E-66 1.2E-70 483.6 14.5 161 184-344 25-188 (253)
3 PF07933 DUF1681: Protein of u 100.0 1.9E-63 4E-68 447.5 5.3 136 184-321 21-160 (160)
4 PF07933 DUF1681: Protein of u 100.0 3.5E-53 7.5E-58 381.1 4.5 114 1-116 42-159 (160)
5 cd00835 RanBD Ran-binding doma 72.3 24 0.00051 30.3 7.9 83 201-285 34-121 (122)
6 KOG1924|consensus 64.2 13 0.00027 42.7 5.7 8 250-257 691-698 (1102)
7 PF00638 Ran_BP1: RanBP1 domai 52.8 84 0.0018 26.6 7.7 83 201-285 33-120 (122)
8 PF00568 WH1: WH1 domain; Int 49.4 46 0.00099 28.2 5.6 80 193-283 28-109 (111)
9 KOG1924|consensus 49.4 55 0.0012 37.8 7.5 11 175-185 589-599 (1102)
10 cd00837 EVH1 EVH1 (Enabled, Va 46.5 85 0.0018 26.4 6.7 82 192-283 19-102 (104)
11 cd00835 RanBD Ran-binding doma 44.7 88 0.0019 26.8 6.6 72 8-81 47-121 (122)
12 COG5216 Uncharacterized conser 38.5 17 0.00036 29.4 1.2 24 6-29 27-50 (67)
13 COG5216 Uncharacterized conser 36.1 20 0.00044 29.0 1.3 24 210-233 27-50 (67)
14 PF09157 TruB-C_2: Pseudouridi 35.5 34 0.00073 25.6 2.4 18 47-66 30-47 (58)
15 cd01205 WASP WASP-type EVH1 do 30.3 1.5E+02 0.0032 25.9 5.7 79 192-283 22-103 (105)
16 PF00568 WH1: WH1 domain; Int 29.6 86 0.0019 26.5 4.2 63 8-79 47-109 (111)
17 PF09269 DUF1967: Domain of un 28.3 82 0.0018 25.0 3.6 32 351-389 31-62 (69)
18 smart00160 RanBD Ran-binding d 28.2 3.6E+02 0.0077 23.7 7.9 81 201-283 43-129 (130)
19 PF08968 DUF1885: Domain of un 26.6 53 0.0012 29.9 2.4 39 228-275 47-85 (130)
20 TIGR03595 Obg_CgtA_exten Obg f 23.1 1.1E+02 0.0023 24.4 3.4 13 378-390 51-63 (69)
21 PF04694 Corona_3: Coronavirus 22.2 47 0.001 26.3 1.1 35 33-67 8-45 (60)
22 PF03664 Glyco_hydro_62: Glyco 21.7 2E+02 0.0043 29.2 5.5 59 190-249 111-183 (271)
23 cd00837 EVH1 EVH1 (Enabled, Va 21.3 2E+02 0.0043 24.2 4.8 63 8-79 40-102 (104)
24 cd00934 PTB Phosphotyrosine-bi 21.2 4.4E+02 0.0095 21.4 6.8 67 11-82 52-120 (123)
25 cd00934 PTB Phosphotyrosine-bi 20.9 4.6E+02 0.01 21.3 7.5 76 202-286 43-120 (123)
26 PF06863 DUF1254: Protein of u 20.4 1.6E+02 0.0034 25.6 4.1 46 221-267 21-68 (128)
27 KOG0010|consensus 20.0 1.5E+02 0.0034 32.3 4.7 45 346-392 26-86 (493)
No 1
>KOG2500|consensus
Probab=100.00 E-value=5.1e-71 Score=517.50 Aligned_cols=193 Identities=53% Similarity=0.897 Sum_probs=170.8
Q ss_pred CeEEeecCeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH 80 (393)
Q Consensus 1 lrv~~kG~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~ 80 (393)
||||++|+.|+|+|||++||+|||+|||+++||++||+|+||||||||||+|+|||||||||||+||+||||||||||||
T Consensus 46 lrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~dgngr~AFiGlGF~eR~dafDfnvaLqDH 125 (253)
T KOG2500|consen 46 LRVVAKGERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVEDGNGRHAFIGLGFGERGDAFDFNVALQDH 125 (253)
T ss_pred eEEEEcCcEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEeCCCccEEEEeecccccccccchhhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHhhhhhc--cCCccccccccCCCcEEEEee-cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC-C
Q psy1797 81 FKWLKKTEEIEKEK--EEPKQELDLKFKEGETIKINM-KITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPP-A 156 (393)
Q Consensus 81 ~K~~k~~~e~~~~~--~~~~p~~D~slKeGqTI~Ini-~~~kk~g~~~~~~~~~~~~~g~~LlPPPpg~~~~~~~pp~-~ 156 (393)
+||+++++++|++. .+..|++||+|||||||+||| |++||+|..+.++..+++ +|++|||||||| +..+.||| +
T Consensus 126 fkyv~~~~e~ek~eq~~d~~pslDlgFKEGeTIkinikn~tkk~g~~s~pr~~~gk-~gl~llPPPpgg-t~~ilPPP~p 203 (253)
T KOG2500|consen 126 FKYVKRQKEAEKQEQHYDAGPSLDLGFKEGETIKINIKNITKKKGAASWPRTGPGK-GGLGLLPPPPGG-TSIILPPPPP 203 (253)
T ss_pred HHHHHHHHHHHhhhcccCCCccccccccCCcEEEEEeeccccccccccccccCCCC-CcccccCCCCCC-cccccCCCCC
Confidence 99999999999874 478999999999999999999 588889888666666555 788999999999 45555555 3
Q ss_pred CCC--------CCCCCCcC-CCCCCCccccccCCCCCCCCCCCCCCCC
Q psy1797 157 PSQ--------NSSPIHQV-NANANNWGDFTSAAPAPAPQPSRAADWN 195 (393)
Q Consensus 157 ~~~--------~~~p~~~~-~~~~~~WgdF~~a~~~~SAqGyrAadW~ 195 (393)
-.+ .++|.+++ ++.+|+|+||+.|+++.++|-...++|.
T Consensus 204 ~a~v~t~~~Spg~sp~~~p~s~~sDlw~d~~~As~s~~~q~~~~~nwv 251 (253)
T KOG2500|consen 204 LAPVTTAQSSPGSSPAPQPSSALSDLWTDFEEASGSKKSQTAPSDNWV 251 (253)
T ss_pred CCccceeccCCCCCCCCCCCcccccccccccccccccccccCCCCCcc
Confidence 222 12344555 5789999999999999888888888997
No 2
>KOG2500|consensus
Probab=100.00 E-value=5.5e-66 Score=483.62 Aligned_cols=161 Identities=55% Similarity=0.905 Sum_probs=151.1
Q ss_pred CCCCCCCCCCCCCCCCceeEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEE
Q psy1797 184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAF 263 (393)
Q Consensus 184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~Af 263 (393)
.+++||||++|+|++|+||||||||++|+.|.|+|||++||+|||+||++.+|+++||+|+||||||||||+|++|||||
T Consensus 25 ~t~~gyra~eW~l~~~~WtGrlrvvakg~~~~ikLeD~tsg~LfA~c~id~~~~~avEav~DSSRYFViRv~dgngr~AF 104 (253)
T KOG2500|consen 25 ATSRGYRAGEWNLDKPAWTGRLRVVAKGERCEIKLEDKTSGELFAQCPIDEGPGNAVEAVSDSSRYFVIRVEDGNGRHAF 104 (253)
T ss_pred ccCCCccccccccCCccccceeEEEEcCcEEEEEeccCCchhhhhhCcccCCCCccceeecccceEEEEEEeCCCccEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCcccchhHhhHHHHHHhhhhhhhhhh--ccCCCccCCcCCCCCceEEEeec-ccccccccCCcccccccccC
Q psy1797 264 IGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKE--KEEPKQELDLKFKEGETIKINMK-ITVSTYTLGLGRQAFIGLGF 340 (393)
Q Consensus 264 IGiGF~eRsdAFDFnVALqD~~K~l~~~~e~~~~--~~~~~p~~D~SLKeGeTI~Ini~-~~kk~~~~~~~~~~~~~~~~ 340 (393)
|||||+||+||||||||||||+||+++++++|++ ..+..|++||+|||||||+|||+ ++||+..++.++-+-++.|.
T Consensus 105 iGlGF~eR~dafDfnvaLqDHfkyv~~~~e~ek~eq~~d~~pslDlgFKEGeTIkinikn~tkk~g~~s~pr~~~gk~gl 184 (253)
T KOG2500|consen 105 IGLGFGERGDAFDFNVALQDHFKYVKRQKEAEKQEQHYDAGPSLDLGFKEGETIKINIKNITKKKGAASWPRTGPGKGGL 184 (253)
T ss_pred EeecccccccccchhhhHHHHHHHHHHHHHHHhhhcccCCCccccccccCCcEEEEEeeccccccccccccccCCCCCcc
Confidence 9999999999999999999999999999999876 56889999999999999999998 68999999999877555555
Q ss_pred CCCC
Q psy1797 341 SDRS 344 (393)
Q Consensus 341 ~~~~ 344 (393)
.++|
T Consensus 185 ~llP 188 (253)
T KOG2500|consen 185 GLLP 188 (253)
T ss_pred cccC
Confidence 5555
No 3
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=100.00 E-value=1.9e-63 Score=447.48 Aligned_cols=136 Identities=57% Similarity=0.987 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCCCceeEEEEEEEeCCee--EEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCe
Q psy1797 184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKEC--ILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQ 261 (393)
Q Consensus 184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~--~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~ 261 (393)
++++||||++|++++|+|||||||+++|+.| .|+|||++||+|||+|||+.+ .+||+|+||||||||||+|++|||
T Consensus 21 ~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~--~~VE~v~DSSRYFvlRv~d~~Gr~ 98 (160)
T PF07933_consen 21 TSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY--AAVEPVIDSSRYFVLRVQDPSGRH 98 (160)
T ss_dssp -SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS----EEE-TT--S-EEEEEEETTTEE
T ss_pred CCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCC--CceEEeecccceEEEEEEcCCCcE
Confidence 3467999999999999999999999999999 999999999999999999975 899999999999999999999999
Q ss_pred EEEeeecCCCCcccchhHhhHHHHHHhhhhhhhhhhc--cCCCccCCcCCCCCceEEEeecc
Q psy1797 262 AFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEK--EEPKQELDLKFKEGETIKINMKI 321 (393)
Q Consensus 262 AfIGiGF~eRsdAFDFnVALqD~~K~l~~~~e~~~~~--~~~~p~~D~SLKeGeTI~Ini~~ 321 (393)
|||||||+|||||||||||||||+||++++.+.++.. .+..|++||||||||||+|||++
T Consensus 99 AfiGiGF~eRsdAFDF~vaLqd~~k~~~~~~~~~~~~~~~~~~p~~D~sLKeGetI~ini~g 160 (160)
T PF07933_consen 99 AFIGIGFRERSDAFDFNVALQDHRKYLKREKEAEEQSQAAESQPKKDYSLKEGETIKINIGG 160 (160)
T ss_dssp EEEEEE-S-HHHHHHHHHHHHHHHS-SS----------------------------------
T ss_pred EEEEEeeccccccccHHHHHHHHHHHhhchhhhhhhhcccCCCCccCCcCCCCCEEEEecCC
Confidence 9999999999999999999999999999999887554 37789999999999999999974
No 4
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=100.00 E-value=3.5e-53 Score=381.08 Aligned_cols=114 Identities=59% Similarity=1.000 Sum_probs=65.9
Q ss_pred CeEEeecCee--EEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhh
Q psy1797 1 MRLVTKDKEC--ILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQ 78 (393)
Q Consensus 1 lrv~~kG~~~--~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLq 78 (393)
|||+++|+.| .|+|||++||+|||+|||+.+ .+||+|+||||||||||+|++||||||||||+||+||||||||||
T Consensus 42 lrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~--~~VE~v~DSSRYFvlRv~d~~Gr~AfiGiGF~eRsdAFDF~vaLq 119 (160)
T PF07933_consen 42 LRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDY--AAVEPVIDSSRYFVLRVQDPSGRHAFIGIGFRERSDAFDFNVALQ 119 (160)
T ss_dssp EEEE--SSSE--EEEEE-SS--SS-EEEEE-SS----EEE-TT--S-EEEEEEETTTEEEEEEEE-S-HHHHHHHHHHHH
T ss_pred EEEEEcCCeeEEEEEecCCCCcceEEECcccCC--CceEEeecccceEEEEEEcCCCcEEEEEEeeccccccccHHHHHH
Confidence 7999999999 999999999999999999986 799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHhhhhhcc--CCccccccccCCCcEEEEeec
Q psy1797 79 DHFKWLKKTEEIEKEKE--EPKQELDLKFKEGETIKINMK 116 (393)
Q Consensus 79 D~~K~~k~~~e~~~~~~--~~~p~~D~slKeGqTI~Ini~ 116 (393)
||+||++++.+.++++. +..|++||||||||||+|||+
T Consensus 120 d~~k~~~~~~~~~~~~~~~~~~p~~D~sLKeGetI~ini~ 159 (160)
T PF07933_consen 120 DHRKYLKREKEAEEQSQAAESQPKKDYSLKEGETIKINIG 159 (160)
T ss_dssp HHHS-SS---------------------------------
T ss_pred HHHHHhhchhhhhhhhcccCCCCccCCcCCCCCEEEEecC
Confidence 99999999998876554 678999999999999999995
No 5
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=72.31 E-value=24 Score=30.33 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=64.1
Q ss_pred eeEEEEEEEeC--CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCC---CCeEEEeeecCCCCccc
Q psy1797 201 WTGRMRLVTKD--KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDS---GRQAFIGLGFSDRSDSF 275 (393)
Q Consensus 201 wtGrlrV~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~---GR~AfIGiGF~eRsdAF 275 (393)
=.|-|+|.... ..+-|.+....+|.|..++++. ++..+...--|.+++++-..|.+ +......|-|..=.+|=
T Consensus 34 G~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~--~~~~~~~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~ 111 (122)
T cd00835 34 GVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLV--PGMKLQPMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIAD 111 (122)
T ss_pred eEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEec--CCcEEeecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHH
Confidence 46788888765 4677777777799999999997 46677777656777777666653 68888999998888888
Q ss_pred chhHhhHHHH
Q psy1797 276 DLNVALQDHF 285 (393)
Q Consensus 276 DFnVALqD~~ 285 (393)
.|.-+++++.
T Consensus 112 ~f~~~~~~~~ 121 (122)
T cd00835 112 EFKEAIEEAK 121 (122)
T ss_pred HHHHHHHHhh
Confidence 8888888764
No 6
>KOG1924|consensus
Probab=64.22 E-value=13 Score=42.67 Aligned_cols=8 Identities=50% Similarity=0.443 Sum_probs=4.7
Q ss_pred eEEEEecC
Q psy1797 250 FVLRIKDD 257 (393)
Q Consensus 250 FVLRV~d~ 257 (393)
-.|||-|.
T Consensus 691 kel~ilDs 698 (1102)
T KOG1924|consen 691 KELRILDS 698 (1102)
T ss_pred hhheecch
Confidence 34666665
No 7
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=52.77 E-value=84 Score=26.55 Aligned_cols=83 Identities=14% Similarity=0.327 Sum_probs=58.5
Q ss_pred eeEEEEEEEeC--CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEE---ecCCCCeEEEeeecCCCCccc
Q psy1797 201 WTGRMRLVTKD--KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRI---KDDSGRQAFIGLGFSDRSDSF 275 (393)
Q Consensus 201 wtGrlrV~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV---~d~~GR~AfIGiGF~eRsdAF 275 (393)
=+|.|||.... .++-|.+....+|.|-.++++.. +..+.+.-.|.+.++.-. .|+.|....+=|=|.+=.+|=
T Consensus 33 G~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~irf~~~e~a~ 110 (122)
T PF00638_consen 33 GVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFK--GMKLKPMKGSEKSLVWTAIDYADEEGKPETYLIRFKSAEDAD 110 (122)
T ss_dssp EEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--T--TC-EEESTTTTTEEEEEEEECTTSSSEEEEEEEE-SSHHHHH
T ss_pred ceeEEEEEEccCCcceEEEEEEcccCceeEEEEecC--CceecccccCCcEEEEEeccccCCCCceEEEEEEECCHHHHH
Confidence 36789998875 46778888778999999999974 566777776666555422 345577888888898877788
Q ss_pred chhHhhHHHH
Q psy1797 276 DLNVALQDHF 285 (393)
Q Consensus 276 DFnVALqD~~ 285 (393)
.|.-+++++.
T Consensus 111 ~f~~~i~e~~ 120 (122)
T PF00638_consen 111 EFKKKIEEAK 120 (122)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 8
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=49.45 E-value=46 Score=28.21 Aligned_cols=80 Identities=18% Similarity=0.358 Sum_probs=56.5
Q ss_pred CCCCCCCceeEEEEEEEeC--CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecCC
Q psy1797 193 DWNLQEPQWTGRMRLVTKD--KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSD 270 (393)
Q Consensus 193 dW~~~~p~wtGrlrV~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~e 270 (393)
.|... .-+|.|.++... ....|++.|-.++.+--+|-+.. + .+-.-++.-|..-+ +++ ..+||+|.+
T Consensus 28 ~W~~~--~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~--~--~~Y~~~~~~Fh~f~--~~~---~~~GLnF~s 96 (111)
T PF00568_consen 28 QWSPV--KGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYP--G--FVYTKARPFFHQFE--DDD---CVYGLNFAS 96 (111)
T ss_dssp SEEES--SSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEEST--T---EEEEESSSEEEEE--ETT---CEEEEEESS
T ss_pred cEeeC--CeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecC--C--CEEEeCCCcEEEEE--eCC---eEEEEecCC
Confidence 48632 678889988754 56889999988888877777753 3 33333455455555 442 299999999
Q ss_pred CCcccchhHhhHH
Q psy1797 271 RSDSFDLNVALQD 283 (393)
Q Consensus 271 RsdAFDFnVALqD 283 (393)
-.||-.|.-.+++
T Consensus 97 e~eA~~F~~~v~~ 109 (111)
T PF00568_consen 97 EEEADQFYKKVQE 109 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877765
No 9
>KOG1924|consensus
Probab=49.43 E-value=55 Score=37.82 Aligned_cols=11 Identities=36% Similarity=0.890 Sum_probs=4.3
Q ss_pred cccccCCCCCC
Q psy1797 175 GDFTSAAPAPA 185 (393)
Q Consensus 175 gdF~~a~~~~S 185 (393)
+-|-...++++
T Consensus 589 ~g~~Gg~ppPP 599 (1102)
T KOG1924|consen 589 GGFLGGPPPPP 599 (1102)
T ss_pred CCCCCCCCCCC
Confidence 34444333333
No 10
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=46.48 E-value=85 Score=26.45 Aligned_cols=82 Identities=12% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCCCCCCCceeEEEEEEEe--CCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecC
Q psy1797 192 ADWNLQEPQWTGRMRLVTK--DKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFS 269 (393)
Q Consensus 192 adW~~~~p~wtGrlrV~~~--g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~ 269 (393)
..|.... --.|.|.++.. .....|++.|..++.+==+|.+-. -.+---++.-|+.-+.. ...+|+.|.
T Consensus 19 ~~W~~~~-~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~----~~~y~~~~~~Fh~w~~~-----~~~~GL~F~ 88 (104)
T cd00837 19 GKWVPAS-GGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYK----GLKYTQATPFFHQWEDD-----NCVYGLNFA 88 (104)
T ss_pred CceEECC-CCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecC----CcEEeecCCeEEEEEcC-----CcEEEEeeC
Confidence 4687443 47789999874 456889999998877766666643 24555577777777744 348999999
Q ss_pred CCCcccchhHhhHH
Q psy1797 270 DRSDSFDLNVALQD 283 (393)
Q Consensus 270 eRsdAFDFnVALqD 283 (393)
+-.||-.|.-++++
T Consensus 89 se~eA~~F~~~v~~ 102 (104)
T cd00837 89 SEEEAAQFRKKVLE 102 (104)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999877654
No 11
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=44.72 E-value=88 Score=26.81 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=54.5
Q ss_pred CeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCC---CCeEEEeeeecCCCcccchhhhhhHHH
Q psy1797 8 KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDS---GRQAFIGLGFSDRSDSFDLNVALQDHF 81 (393)
Q Consensus 8 ~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~---Gr~AfIGiGF~dR~dAFDFnvaLqD~~ 81 (393)
..+-|.+....+|.|...+++. |+..+...--|.+++++-..|.+ +......|-|..=.+|=.|.-+++++.
T Consensus 47 ~~~RivmR~d~~~kv~lN~~i~--~~~~~~~~~~~~k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 47 GKYRLLMRRDQVLKLCLNHKLV--PGMKLQPMGNSDKSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred CcEEEEEEeCCccEEEEeeEec--CCcEEeecCCCCcEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 3556666666789999999987 56778877755677777666643 688889999988888888888887764
No 12
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=38.54 E-value=17 Score=29.41 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.8
Q ss_pred ecCeeEEEEEeCCCCceeeeCccc
Q psy1797 6 KDKECILKLEDRNSGELFAQCPID 29 (393)
Q Consensus 6 kG~~~~I~LeD~~tGeLFA~~Pv~ 29 (393)
.|+...|.|||-..||.-|.||--
T Consensus 27 CGDRFeIsLeDl~~GE~VArCPSC 50 (67)
T COG5216 27 CGDRFEISLEDLRNGEVVARCPSC 50 (67)
T ss_pred CCCEeEEEHHHhhCCceEEEcCCc
Confidence 588999999999999999999954
No 13
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=36.15 E-value=20 Score=28.97 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.1
Q ss_pred eCCeeEEEEeeCCCCceeeeCccc
Q psy1797 210 KDKECILKLEDRNSGELFAQCPID 233 (393)
Q Consensus 210 ~g~~~~I~LeD~~tGeLFA~cPv~ 233 (393)
.|++..|.|||-..||.-|.||--
T Consensus 27 CGDRFeIsLeDl~~GE~VArCPSC 50 (67)
T COG5216 27 CGDRFEISLEDLRNGEVVARCPSC 50 (67)
T ss_pred CCCEeEEEHHHhhCCceEEEcCCc
Confidence 589999999999999999999964
No 14
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=35.50 E-value=34 Score=25.59 Aligned_cols=18 Identities=44% Similarity=0.986 Sum_probs=13.5
Q ss_pred EEEEecCCCCeEEEeeeecC
Q psy1797 47 VLRIKDDSGRQAFIGLGFSD 66 (393)
Q Consensus 47 VlRv~d~~Gr~AfIGiGF~d 66 (393)
.+||-|++|+ |||||-.+
T Consensus 30 ~vrvy~~~~~--FlGig~~~ 47 (58)
T PF09157_consen 30 LVRVYDEDGR--FLGIGEID 47 (58)
T ss_dssp EEEEETTTTE--EEEEEEE-
T ss_pred eEEEECCCCE--EEEEEEEc
Confidence 7888876554 99999765
No 15
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=30.31 E-value=1.5e+02 Score=25.93 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=52.8
Q ss_pred CCCCCCCCceeEEEEEEEe--CCeeEEEEeeCCCC-ceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeec
Q psy1797 192 ADWNLQEPQWTGRMRLVTK--DKECILKLEDRNSG-ELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGF 268 (393)
Q Consensus 192 adW~~~~p~wtGrlrV~~~--g~~~~I~LeD~~tG-eLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF 268 (393)
..|.. - .+|-|-++.- +....|+|.|-.++ -||-|==|.. .+---|- .|| +-.+ |...++|+-|
T Consensus 22 ~~W~~--~-~~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqElY~~-----f~y~~~r-~fF-htFe---~d~c~~GL~F 88 (105)
T cd01205 22 GRWTK--T-LTGAVCLVKDNVQKSYFIRLFDIKANRIIWEQELYDN-----FEYQQPR-PFF-HTFE---GDDCVVGLNF 88 (105)
T ss_pred CeeEE--E-eEEEEEEEEECCCCEEEEEEEEccCCcEEEEEEcccC-----cEEccCC-CcE-EEEe---ccCcEEEEEE
Confidence 56873 2 8898888875 67899999998875 4455533332 2222222 233 3333 4468999999
Q ss_pred CCCCcccchhHhhHH
Q psy1797 269 SDRSDSFDLNVALQD 283 (393)
Q Consensus 269 ~eRsdAFDFnVALqD 283 (393)
.|.+||-.|.-.+++
T Consensus 89 ade~EA~~F~k~v~~ 103 (105)
T cd01205 89 ADETEAAEFRKKVLD 103 (105)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999876654
No 16
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=29.63 E-value=86 Score=26.55 Aligned_cols=63 Identities=17% Similarity=0.377 Sum_probs=42.2
Q ss_pred CeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhH
Q psy1797 8 KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQD 79 (393)
Q Consensus 8 ~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD 79 (393)
....|++.|-.++.+--.|-+. ++... .-++.-|..-+ +++ ..+||+|.+-.||-.|.-.++.
T Consensus 47 ~~y~I~~~~~~~~~~v~e~~l~--~~~~Y--~~~~~~Fh~f~--~~~---~~~GLnF~se~eA~~F~~~v~~ 109 (111)
T PF00568_consen 47 RSYFIRLYDLQDGKVVWEQELY--PGFVY--TKARPFFHQFE--DDD---CVYGLNFASEEEADQFYKKVQE 109 (111)
T ss_dssp TEEEEEEEETTTTEEEEEEEES--TT-EE--EEESSSEEEEE--ETT---CEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEEEEEccccEEEEEeEec--CCCEE--EeCCCcEEEEE--eCC---eEEEEecCCHHHHHHHHHHHhc
Confidence 4677888887788877777664 44332 23344444444 432 2999999999999988876654
No 17
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=28.30 E-value=82 Score=25.04 Aligned_cols=32 Identities=28% Similarity=0.266 Sum_probs=17.2
Q ss_pred hhhHHHHHHHhhhHHHHHhhcCCccccccccccCceEEE
Q psy1797 351 VALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKI 389 (393)
Q Consensus 351 v~~q~~~~~l~~~~~~~~~~~~p~~~~d~~~~~~~~~~~ 389 (393)
=+++-|-+.|++.-=.+++ +.+|.|+|+||.|
T Consensus 31 e~~~rf~~~L~~~Gv~~~L-------~~~G~~~GD~V~I 62 (69)
T PF09269_consen 31 ESLRRFQRKLKKMGVEKAL-------RKAGAKEGDTVRI 62 (69)
T ss_dssp GGHHHHHHHHHHTTHHHHH-------HTTT--TT-EEEE
T ss_pred HHHHHHHHHHHHCCHHHHH-------HHcCCCCCCEEEE
Confidence 3455555555553333333 3579999999998
No 18
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=28.17 E-value=3.6e+02 Score=23.72 Aligned_cols=81 Identities=11% Similarity=0.248 Sum_probs=57.0
Q ss_pred eeEEEEEEEeC---CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEec---CCCCeEEEeeecCCCCcc
Q psy1797 201 WTGRMRLVTKD---KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKD---DSGRQAFIGLGFSDRSDS 274 (393)
Q Consensus 201 wtGrlrV~~~g---~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d---~~GR~AfIGiGF~eRsdA 274 (393)
=.|-|||...- .+.-|.+....++.+.++|++.. +.-++++--|-+.++.-..| +++.-....|-|..=.+|
T Consensus 43 G~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~--~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a 120 (130)
T smart00160 43 GVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFK--SMTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEA 120 (130)
T ss_pred cEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecC--CcEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHH
Confidence 46889997653 56778888888999999999974 56677775555555432322 345667778888877777
Q ss_pred cchhHhhHH
Q psy1797 275 FDLNVALQD 283 (393)
Q Consensus 275 FDFnVALqD 283 (393)
=-|.-++++
T Consensus 121 ~~f~~~~~e 129 (130)
T smart00160 121 DSFKNIFEE 129 (130)
T ss_pred HHHHHHHHh
Confidence 777776654
No 19
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=26.64 E-value=53 Score=29.91 Aligned_cols=39 Identities=31% Similarity=0.599 Sum_probs=24.7
Q ss_pred eeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecCCCCccc
Q psy1797 228 AQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSF 275 (393)
Q Consensus 228 A~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~eRsdAF 275 (393)
|+.||+ ||...+ ++|.|+=.++-=+...||+| .|+..+|
T Consensus 47 aAFPY~------I~~~~~--~w~yLkg~~~~Y~~I~iGVg-~e~e~~~ 85 (130)
T PF08968_consen 47 AAFPYT------IEEKEE--KWFYLKGKNDRYKYIVIGVG-TENEQSY 85 (130)
T ss_dssp HH--EE------EEEET---TEEEEEESSTT--EEEEEEE-EETTEEE
T ss_pred ccCceE------EeecCc--eEEEEecCCCceeeEEEeec-cCCcceE
Confidence 566765 555555 89999977764578999999 5666554
No 20
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=23.06 E-value=1.1e+02 Score=24.43 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=11.3
Q ss_pred ccccccCceEEEE
Q psy1797 378 DLKFKEGETIKIN 390 (393)
Q Consensus 378 d~~~~~~~~~~~~ 390 (393)
.+|.|+|+||+|-
T Consensus 51 ~~G~~~GD~V~Ig 63 (69)
T TIGR03595 51 KAGAKDGDTVRIG 63 (69)
T ss_pred HcCCCCCCEEEEc
Confidence 5799999999984
No 21
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=22.19 E-value=47 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=24.3
Q ss_pred CceeEEcccc--cceEEEEEecC-CCCeEEEeeeecCC
Q psy1797 33 GVAIETVSDS--SRYFVLRIKDD-SGRQAFIGLGFSDR 67 (393)
Q Consensus 33 g~aVE~V~DS--SRYFVlRv~d~-~Gr~AfIGiGF~dR 67 (393)
+++|..|+|- +-||++.+.=. .-.+-++-|||.|-
T Consensus 8 ~~svdavldeld~~yfavtlkvef~tgkllVcigFGDT 45 (60)
T PF04694_consen 8 DTSVDAVLDELDCAYFAVTLKVEFKTGKLLVCIGFGDT 45 (60)
T ss_pred cccHHHHHhhhcceeEEEEEEEEEecCcEEEEEecchH
Confidence 4677788773 56998765543 23567889999873
No 22
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=21.65 E-value=2e+02 Score=29.23 Aligned_cols=59 Identities=22% Similarity=0.597 Sum_probs=39.3
Q ss_pred CCCCCCCCCCceeEEEE----------EEEeCCeeEEEEeeCCCCcee-eeCcccCCCC---cceEEccccccc
Q psy1797 190 RAADWNLQEPQWTGRMR----------LVTKDKECILKLEDRNSGELF-AQCPIDTYPG---VAIETVSDSSRY 249 (393)
Q Consensus 190 rAadW~~~~p~wtGrlr----------V~~~g~~~~I~LeD~~tGeLF-A~cPv~~~~~---~aVE~V~DSSRY 249 (393)
....|...+++++|.+. |+--+..|.+-+-+.+ |.|| ++-|+..+|+ ...+-|+..+|+
T Consensus 111 npngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~Dn-GkiYRs~~~i~nFP~~fgs~~~vvmsd~~~ 183 (271)
T PF03664_consen 111 NPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDN-GKIYRSSMPIGNFPGGFGSSYTVVMSDTRN 183 (271)
T ss_pred CCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCC-CcEEEeccchhhCCCCCCCceEEEEecCcc
Confidence 46689988999998753 2222345776666665 9998 7888888774 345555555564
No 23
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=21.34 E-value=2e+02 Score=24.21 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=43.1
Q ss_pred CeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhH
Q psy1797 8 KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQD 79 (393)
Q Consensus 8 ~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD 79 (393)
....|++.|..++.+==.|.+-. + ++---++..++.-+.. ...+|+.|.+-.||-.|.-++++
T Consensus 40 ~~y~i~~~~~~~~~vv~~~~l~~--~--~~y~~~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~v~~ 102 (104)
T cd00837 40 NTYRIRGVDIQDQKVIWNQEIYK--G--LKYTQATPFFHQWEDD-----NCVYGLNFASEEEAAQFRKKVLE 102 (104)
T ss_pred CEEEEEEEecCCCeEEEEEEecC--C--cEEeecCCeEEEEEcC-----CcEEEEeeCCHHHHHHHHHHHHh
Confidence 45678888877766655555543 3 4444556666666644 34899999999999988776654
No 24
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=21.17 E-value=4.4e+02 Score=21.41 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=44.5
Q ss_pred EEEEEeCCCCceeeeCcccCCCCceeEEccc--ccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHHHH
Q psy1797 11 ILKLEDRNSGELFAQCPIDTYPGVAIETVSD--SSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFK 82 (393)
Q Consensus 11 ~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~D--SSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~~K 82 (393)
.|+|.|..++++....|+.. ++. -..| ..|+|.+-..++.. .-+.---|.-.+.|=+.+-+|...++
T Consensus 52 gv~l~d~~~~~~l~~~~l~~---Is~-~~~~~~~~~~F~~i~~~~~~-~~~~CHvF~c~~~a~~i~~~l~~af~ 120 (123)
T cd00934 52 GVKLIDPKTKEVLASHPIRR---ISF-CAADPDDLRIFAFIAREPGS-SRFECHVFKCEKVAEPIALTLGQAFQ 120 (123)
T ss_pred cEEEEeCCCCcEEEeeccce---EEE-EECCCCCCcEEEEEEEcCCC-CcEEEEEEEeCchHHHHHHHHHHHHH
Confidence 46789999999999999875 222 2223 68999999998753 23333334333337777777777664
No 25
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=20.87 E-value=4.6e+02 Score=21.27 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=48.9
Q ss_pred eEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccc--cccceEEEEecCCCCeEEEeeecCCCCcccchhH
Q psy1797 202 TGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSD--SSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNV 279 (393)
Q Consensus 202 tGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~D--SSRYFVLRV~d~~GR~AfIGiGF~eRsdAFDFnV 279 (393)
.-.|.|...| |+|.|..++++....|+.. .+ --..| ..|+|.+-+.++.. .-+.---|.-.+.|=+...
T Consensus 43 ~v~l~vs~~g----v~l~d~~~~~~l~~~~l~~---Is-~~~~~~~~~~~F~~i~~~~~~-~~~~CHvF~c~~~a~~i~~ 113 (123)
T cd00934 43 KVILSVSSDG----VKLIDPKTKEVLASHPIRR---IS-FCAADPDDLRIFAFIAREPGS-SRFECHVFKCEKVAEPIAL 113 (123)
T ss_pred EEEEEEEcCc----EEEEeCCCCcEEEeeccce---EE-EEECCCCCCcEEEEEEEcCCC-CcEEEEEEEeCchHHHHHH
Confidence 3456666544 7889999999999999864 21 12223 68999999999853 2222233333333777887
Q ss_pred hhHHHHH
Q psy1797 280 ALQDHFK 286 (393)
Q Consensus 280 ALqD~~K 286 (393)
+|...++
T Consensus 114 ~l~~af~ 120 (123)
T cd00934 114 TLGQAFQ 120 (123)
T ss_pred HHHHHHH
Confidence 7777665
No 26
>PF06863 DUF1254: Protein of unknown function (DUF1254); InterPro: IPR010679 This entry represents an immunoglobulin-like beta-sandwich domain found in a group of hypothetical proteins of unknown function.; PDB: 3VB9_D 2P3Y_A 3U07_A.
Probab=20.43 E-value=1.6e+02 Score=25.63 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=28.5
Q ss_pred CCCCceeeeCcccCCCCcceEEccc--cccceEEEEecCCCCeEEEeee
Q psy1797 221 RNSGELFAQCPIDTYPGVAIETVSD--SSRYFVLRIKDDSGRQAFIGLG 267 (393)
Q Consensus 221 ~~tGeLFA~cPv~~~~~~aVE~V~D--SSRYFVLRV~d~~GR~AfIGiG 267 (393)
+|.-.|++.|-++-..+..|=.+=| ..|||.+-+.|.. ..-|.++|
T Consensus 21 pN~DtlYs~a~~DL~~gPvvi~vP~~~~~ry~sv~~~D~~-~~~~~~ig 68 (128)
T PF06863_consen 21 PNNDTLYSSAWLDLSNGPVVIEVPDTTGDRYYSVQVYDAW-TNNFANIG 68 (128)
T ss_dssp --SSCEEEEEEEEHCCSSEEEEE-SS-TT--EEEEEEETT-S-EEEECC
T ss_pred CCCCceeEEEEEEcCCCCEEEEeCCCCCCceEEEEEEeCC-ccEEEEcC
Confidence 5667899999988755555555556 5699999999985 33444444
No 27
>KOG0010|consensus
Probab=20.02 E-value=1.5e+02 Score=32.26 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=34.4
Q ss_pred CcchhhhhHHHHHHHhhhHHHHHhhc----------------CCccccccccccCceEEEEEe
Q psy1797 346 SFDLNVALQDHFKWLKKTEEIEKEKE----------------EPKQELDLKFKEGETIKINMK 392 (393)
Q Consensus 346 ~~~~~v~~q~~~~~l~~~~~~~~~~~----------------~p~~~~d~~~~~~~~~~~~~~ 392 (393)
-++++|+.=..|++||. ++.++-+ |+...+.|+++||-||.+-||
T Consensus 26 k~~~~V~~~ssV~qlKE--~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 26 KYEVNVASDSSVLQLKE--LIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEecccchHHHHHHH--HHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence 46888998899999987 4443322 556667889999999998887
Done!