Query psy1797
Match_columns 393
No_of_seqs 259 out of 371
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:01:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tqz_A Necap1; endocytosis, st 100.0 1.5E-55 5.2E-60 384.7 6.5 108 184-291 26-133 (133)
2 1tqz_A Necap1; endocytosis, st 100.0 5.2E-46 1.8E-50 324.7 4.6 87 1-87 47-133 (133)
3 1rrp_B Nuclear pore complex pr 70.8 7.5 0.00026 33.0 5.9 83 201-285 45-132 (134)
4 1qc6_A EVH1 domain from ENA/VA 69.4 8.6 0.00029 32.6 5.9 79 204-291 35-115 (130)
5 1xke_A RAN-binding protein 2; 63.7 40 0.0014 28.4 8.9 85 202-288 32-121 (130)
6 3n7c_A ABR034WP; nuclear pore 60.0 41 0.0014 28.6 8.4 85 202-288 35-122 (130)
7 1k5d_B RAN-specific GTPase-act 42.2 62 0.0021 29.7 7.1 91 201-293 71-167 (201)
8 3rt3_B Ubiquitin-like protein 37.3 31 0.0011 28.8 4.0 128 252-392 5-153 (159)
9 1qc6_A EVH1 domain from ENA/VA 36.0 51 0.0017 27.8 5.1 69 9-86 44-114 (130)
10 1wx7_A Ubiquilin 3; ubiquitin- 35.1 1.4E+02 0.0047 23.4 7.3 64 42-115 14-87 (106)
11 4goq_A Hypothetical protein; P 30.4 72 0.0025 26.9 5.1 56 3-58 26-103 (110)
12 3m63_B Ubiquitin domain-contai 30.2 25 0.00086 28.0 2.2 19 303-321 17-35 (101)
13 3c5t_B Exendin-4, exenatide; l 30.1 22 0.00075 24.2 1.5 14 351-364 9-22 (31)
14 1p3r_A Disabled homolog 2; PTB 28.9 1.3E+02 0.0043 25.9 6.6 76 202-286 61-136 (160)
15 1rrp_B Nuclear pore complex pr 28.5 63 0.0022 27.2 4.5 71 8-80 58-131 (134)
16 3m1i_B RAN-specific GTPase-act 28.2 2E+02 0.0067 26.3 8.0 86 202-289 98-189 (191)
17 3u30_A Ubiquitin, linear DI-ub 28.1 53 0.0018 27.9 4.0 77 301-392 73-168 (172)
18 2y8g_A Ranbp3-B, RAN-binding p 25.6 2.4E+02 0.0084 23.9 7.7 88 202-294 39-133 (138)
19 2ec1_A Nucleoporin 50 kDa; ran 24.8 2E+02 0.0068 24.1 6.9 81 202-285 35-123 (125)
20 4hat_B RAN-specific GTPase-act 22.9 2.6E+02 0.0088 24.0 7.4 85 202-288 47-137 (140)
21 1wi5_A RRP5 protein homolog; S 22.8 1.1E+02 0.0037 24.8 4.8 12 104-115 67-78 (119)
22 2a28_A BZZ1 protein; SH3 domai 22.1 53 0.0018 22.5 2.4 17 303-319 13-29 (54)
23 1nxk_A MAP kinase-activated pr 20.9 55 0.0019 31.0 3.0 24 206-229 68-92 (400)
No 1
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=100.00 E-value=1.5e-55 Score=384.71 Aligned_cols=108 Identities=60% Similarity=1.154 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCCCCCceeEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEE
Q psy1797 184 PAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAF 263 (393)
Q Consensus 184 ~SAqGyrAadW~~~~p~wtGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~Af 263 (393)
++++||||+||++++|+|||||||+++|++|.|+|||++||+|||+|||+++++++||+|+||||||||||+|++|||||
T Consensus 26 ~s~~GyrA~dW~~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE~v~DSSRYFVlRv~d~~gr~Af 105 (133)
T 1tqz_A 26 ASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAF 105 (133)
T ss_dssp CSSSSCCHHHHCCSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEE
T ss_pred CCCCCcccccCCCCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEeCcccCCCCcceEEeecCcCeEEEEEECCCCcEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCcccchhHhhHHHHHHhhhh
Q psy1797 264 IGLGFSDRSDSFDLNVALQDHFKWLKKT 291 (393)
Q Consensus 264 IGiGF~eRsdAFDFnVALqD~~K~l~~~ 291 (393)
|||||+||+||||||||||||+||++++
T Consensus 106 iGiGF~eR~dAFDF~vaLqd~~k~~~~~ 133 (133)
T 1tqz_A 106 IGIGFTDRGDAFDFNVSLQDHFKWVKQE 133 (133)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHSCSSCC
T ss_pred EeeeecccccccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999999874
No 2
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=100.00 E-value=5.2e-46 Score=324.71 Aligned_cols=87 Identities=63% Similarity=1.166 Sum_probs=85.2
Q ss_pred CeEEeecCeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH 80 (393)
Q Consensus 1 lrv~~kG~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~ 80 (393)
|||+++|+.|+|+|||++||+|||+|||+++|+++||+|+||||||||||+|++||||||||||+||+||||||||||||
T Consensus 47 lrv~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~~VE~v~DSSRYFVlRv~d~~gr~AfiGiGF~eR~dAFDF~vaLqd~ 126 (133)
T 1tqz_A 47 LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDH 126 (133)
T ss_dssp EEEECCSSSEEEEEECSSCCSSCEEEEECSSCCCCEEECTTCCSCEEEEEEETTTEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEEeCCCCcEEEeCcccCCCCcceEEeecCcCeEEEEEECCCCcEEEEeeeecccccccchHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q psy1797 81 FKWLKKT 87 (393)
Q Consensus 81 ~K~~k~~ 87 (393)
+||++++
T Consensus 127 ~k~~~~~ 133 (133)
T 1tqz_A 127 FKWVKQE 133 (133)
T ss_dssp HSCSSCC
T ss_pred HHHHhcC
Confidence 9999874
No 3
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=70.77 E-value=7.5 Score=33.04 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=64.4
Q ss_pred eeEEEEEEEe--CCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEec---CCCCeEEEeeecCCCCccc
Q psy1797 201 WTGRMRLVTK--DKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKD---DSGRQAFIGLGFSDRSDSF 275 (393)
Q Consensus 201 wtGrlrV~~~--g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d---~~GR~AfIGiGF~eRsdAF 275 (393)
=+|.|+|... ..++.|.+-...+|.|-+++++.. +..+.+...|.+.++.-..| +.+....+.|=|..-.+|=
T Consensus 45 G~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~--~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~ 122 (134)
T 1rrp_B 45 GIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP--DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAA 122 (134)
T ss_dssp EEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS--SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHH
T ss_pred cEEEEEEEEECCCCeEEEEEEEcCCCcEEEEeEecC--CceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHH
Confidence 4678998874 456777777777999999999974 56677777788988887775 3456778889999888888
Q ss_pred chhHhhHHHH
Q psy1797 276 DLNVALQDHF 285 (393)
Q Consensus 276 DFnVALqD~~ 285 (393)
.|..++.++.
T Consensus 123 ~f~~~~~e~~ 132 (134)
T 1rrp_B 123 LFKCKFEEAQ 132 (134)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8888887653
No 4
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=69.36 E-value=8.6 Score=32.58 Aligned_cols=79 Identities=10% Similarity=0.240 Sum_probs=58.0
Q ss_pred EEEEEEeCCeeEEEEeeC--CCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecCCCCcccchhHhh
Q psy1797 204 RMRLVTKDKECILKLEDR--NSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVAL 281 (393)
Q Consensus 204 rlrV~~~g~~~~I~LeD~--~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~eRsdAFDFnVAL 281 (393)
++.|......-.+||.|- .++.+=.+|.+.. + .+-.-++.+|..-+.. ...+||.|.+-.||=-|.-++
T Consensus 35 ~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~--~--~~y~~~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~~ 105 (130)
T 1qc6_A 35 RINIYHNTASSTFRVVGVKLQDQQVVINYSIVK--G--LKYNQATPTFHQWRDA-----RQVYGLNFASKEEATTFSNAM 105 (130)
T ss_dssp EEEEEEETTTTEEEEEEECTTTCCEEEEEECCT--T--CEEEEEETTEEEEECS-----SCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEEecCCCcEEEEEEEeCCCCeEEEeeEEeC--C--cEEeccCCeeEEEEcC-----CEEEEEecCCHHHHHHHHHHH
Confidence 677777666778888886 5677777777753 3 3333478888888632 369999999999999999999
Q ss_pred HHHHHHhhhh
Q psy1797 282 QDHFKWLKKT 291 (393)
Q Consensus 282 qD~~K~l~~~ 291 (393)
++..+.+.++
T Consensus 106 ~~al~~~~~~ 115 (130)
T 1qc6_A 106 LFALNIMNSQ 115 (130)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 8887766553
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=63.74 E-value=40 Score=28.44 Aligned_cols=85 Identities=12% Similarity=0.188 Sum_probs=65.2
Q ss_pred eEEEEEEEe--CCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecC---CCCeEEEeeecCCCCcccc
Q psy1797 202 TGRMRLVTK--DKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDD---SGRQAFIGLGFSDRSDSFD 276 (393)
Q Consensus 202 tGrlrV~~~--g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~---~GR~AfIGiGF~eRsdAFD 276 (393)
.|-|||... ..++.|.+-...++.|-+++++.. +..+.+..-|.|.|+....|- .++-....|=|..=.+|=.
T Consensus 32 ~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~--~m~~~~~~~s~~~~~~~~~d~~d~~~~~~~~~irfks~e~a~~ 109 (130)
T 1xke_A 32 LGNLKILKNEVNGKLRMLMRREQVLKVCANHWITT--TMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEE 109 (130)
T ss_dssp EEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCT--TSCEEECTTCSSCEEEEEEECSSSCSEEEEEEEECSSHHHHHH
T ss_pred EEEEEEEEcCCCCeEEEEEEEcCCCeEEEecEeCC--CcEEeecCCCCeEEEEEecccCCCCCceEEEEEEECCHHHHHH
Confidence 578888865 356777777667899999999974 667888767778887776553 3467778999988888999
Q ss_pred hhHhhHHHHHHh
Q psy1797 277 LNVALQDHFKWL 288 (393)
Q Consensus 277 FnVALqD~~K~l 288 (393)
|..++.++.+.+
T Consensus 110 f~~~~ee~k~~~ 121 (130)
T 1xke_A 110 FKQKFEECQRLL 121 (130)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999998886543
No 6
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=60.01 E-value=41 Score=28.60 Aligned_cols=85 Identities=11% Similarity=0.165 Sum_probs=62.1
Q ss_pred eEEEEEEEeC---CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecCCCCcccchh
Q psy1797 202 TGRMRLVTKD---KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLN 278 (393)
Q Consensus 202 tGrlrV~~~g---~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~eRsdAFDFn 278 (393)
.|-|||...- .++-|.+-...++.|-+++++.. +-.+.+...|.+-||-=.....|.-....|=|..-.+|=.|.
T Consensus 35 ~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~--~m~~~~~~~~~~~~v~~~~~~dgk~~~~~lrfks~e~A~~f~ 112 (130)
T 3n7c_A 35 VGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVK--SFKYQPIDADNENLIKWPIITDGKLETFIIKVKQKADGRRLV 112 (130)
T ss_dssp EEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCT--TBCCEESCTTCTTEEEEEEEETTEEEEEEEECSSHHHHHHHH
T ss_pred eEEEEEEEecCCCCEEEEEEEecCCceEEeeccccC--CcEEeEcCCCCccEEEEEecCCCceEEEEEEECCHHHHHHHH
Confidence 6889998754 34666666666899999999974 567788876666655322223466678889999999999999
Q ss_pred HhhHHHHHHh
Q psy1797 279 VALQDHFKWL 288 (393)
Q Consensus 279 VALqD~~K~l 288 (393)
-+++++.+-+
T Consensus 113 ~~iee~~~~~ 122 (130)
T 3n7c_A 113 GAVADAQQAM 122 (130)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 7
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=42.22 E-value=62 Score=29.69 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=68.0
Q ss_pred eeEEEEEEEe--CCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEE-ecC---CCCeEEEeeecCCCCcc
Q psy1797 201 WTGRMRLVTK--DKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRI-KDD---SGRQAFIGLGFSDRSDS 274 (393)
Q Consensus 201 wtGrlrV~~~--g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV-~d~---~GR~AfIGiGF~eRsdA 274 (393)
=+|-|||... ..++.|.+-...++.|-+++++.. +.-+.+..-|.|.||.-. .|- .++-..+-|=|..=.+|
T Consensus 71 GvG~lkIlk~k~t~k~RlvMR~d~~~kV~LN~~I~~--~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A 148 (201)
T 1k5d_B 71 GTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITP--MMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENA 148 (201)
T ss_dssp EEEEEEEEECSSSCCEEEEEEETTTCCEEEEEECCS--SCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHH
T ss_pred ceEEEEEEEcCCCCcEEEEEEECCcceEEEeeEecC--CceeeecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHH
Confidence 3678888865 356777777777899999999964 556666667888888865 553 23455677888887889
Q ss_pred cchhHhhHHHHHHhhhhhh
Q psy1797 275 FDLNVALQDHFKWLKKTEE 293 (393)
Q Consensus 275 FDFnVALqD~~K~l~~~~e 293 (393)
=.|..+++++.+.++....
T Consensus 149 ~~f~~~~ee~k~~~~~~~~ 167 (201)
T 1k5d_B 149 QKFKTKFEECRKEIEEREK 167 (201)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999888766543
No 8
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=37.32 E-value=31 Score=28.77 Aligned_cols=128 Identities=12% Similarity=0.098 Sum_probs=64.0
Q ss_pred EEEecCCCCeEEEeeecCCCCcccchhHhhHHHHHHhhh-hhhh-h---hhccCCCccCCcCCCCCceEEEeeccccccc
Q psy1797 252 LRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK-TEEI-E---KEKEEPKQELDLKFKEGETIKINMKITVSTY 326 (393)
Q Consensus 252 LRV~d~~GR~AfIGiGF~eRsdAFDFnVALqD~~K~l~~-~~e~-~---~~~~~~~p~~D~SLKeGeTI~Ini~~~kk~~ 326 (393)
|.|..-+|+.-.| -+..-..-.|+...+++....--. +.=. - +.=.+...=.||.+++|.||++-+...
T Consensus 5 i~vk~~~g~~~~l--~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~---- 78 (159)
T 3rt3_B 5 LTVKMLAGNEFQV--SLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKS---- 78 (159)
T ss_dssp EEEEETTSCEEEE--ECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCC----
T ss_pred EEEEECCCCEEEE--EeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCC----
Confidence 4555555665444 444444555666666554432100 0000 0 000123345689999999999987420
Q ss_pred ccCCcccccccccCCCCCCCcchhhhhHHHHHHHhhhHHHHHhhcCC----------------ccccccccccCceEEEE
Q psy1797 327 TLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEP----------------KQELDLKFKEGETIKIN 390 (393)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~p----------------~~~~d~~~~~~~~~~~~ 390 (393)
..+++-..=. .....+.+.|...+-|..|++ .++++.--| ..=-||++++|.||.+.
T Consensus 79 --~~~m~i~vk~---~~g~~~~~~v~~~~tV~~lK~--~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~ 151 (159)
T 3rt3_B 79 --DEPLSILVRN---NKGRSSTYEVRLTQTVAHLKQ--QVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN 151 (159)
T ss_dssp --CCCEEEEEEC---TTSCEEEEEECTTSBHHHHHH--HHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred --CCcEEEEEEC---CCCCEEEEEeCCCCCHHHHHH--HHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence 0112211100 001223444555555666665 443332222 23358999999999988
Q ss_pred Ee
Q psy1797 391 MK 392 (393)
Q Consensus 391 ~~ 392 (393)
++
T Consensus 152 ~r 153 (159)
T 3rt3_B 152 LR 153 (159)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 9
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=36.01 E-value=51 Score=27.76 Aligned_cols=69 Identities=10% Similarity=0.233 Sum_probs=46.7
Q ss_pred eeEEEEEeC--CCCceeeeCcccCCCCceeEEcccccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHHHHHhhh
Q psy1797 9 ECILKLEDR--NSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 86 (393)
Q Consensus 9 ~~~I~LeD~--~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~~K~~k~ 86 (393)
.-+++|.|. .++.+=..|.+. ++...-. ++.+|..-+.. ...+||.|.+-.||=-|.-++++..+-+.+
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~~i~--~~~~y~~--~~~~Fh~w~~~-----~~~~GL~F~se~eA~~F~~~~~~al~~~~~ 114 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINYSIV--KGLKYNQ--ATPTFHQWRDA-----RQVYGLNFASKEEATTFSNAMLFALNIMNS 114 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEEECC--TTCEEEE--EETTEEEEECS-----SCEEEEEESCHHHHHHHHHHHHHHHHHTC-
T ss_pred CcEEEEEEEeCCCCeEEEeeEEe--CCcEEec--cCCeeEEEEcC-----CEEEEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 445677765 456665666553 3443433 77777777622 379999999999999999888887655444
No 10
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.09 E-value=1.4e+02 Score=23.44 Aligned_cols=64 Identities=8% Similarity=0.177 Sum_probs=35.0
Q ss_pred ccceEEEEEecCCCCeEEEeeeecCCCcccchhhhhhHHHHHhhhhHhhh--hhc--------cCCccccccccCCCcEE
Q psy1797 42 SSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIE--KEK--------EEPKQELDLKFKEGETI 111 (393)
Q Consensus 42 SSRYFVlRv~d~~Gr~AfIGiGF~dR~dAFDFnvaLqD~~K~~k~~~e~~--~~~--------~~~~p~~D~slKeGqTI 111 (393)
.++.+-|+|...+|++ -+-+ +-+..+.+..+.|....... .+. .+...-.||.+++|.+|
T Consensus 14 ~~~~m~I~Vk~~~g~~---~l~v-------~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i 83 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDKE---DFSV-------TDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTV 83 (106)
T ss_dssp CSSEEEEEEECSSCEE---EEEE-------ETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEE
T ss_pred CCceEEEEEEeCCCcE---EEEE-------CCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEE
Confidence 3466788888776652 2222 22334444444443333221 110 12334458899999999
Q ss_pred EEee
Q psy1797 112 KINM 115 (393)
Q Consensus 112 ~Ini 115 (393)
++-+
T Consensus 84 ~l~~ 87 (106)
T 1wx7_A 84 HLVI 87 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 11
>4goq_A Hypothetical protein; PF07372 family protein, DUF1491, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.87A {Caulobacter crescentus}
Probab=30.42 E-value=72 Score=26.88 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=33.0
Q ss_pred EEeecC----eeEEEEEeCCC--CceeeeCcccCCCCcee-------EEcccc---------cceEEEEEecCCCCeE
Q psy1797 3 LVTKDK----ECILKLEDRNS--GELFAQCPIDTYPGVAI-------ETVSDS---------SRYFVLRIKDDSGRQA 58 (393)
Q Consensus 3 v~~kG~----~~~I~LeD~~t--GeLFA~~Pv~~~pg~aV-------E~V~DS---------SRYFVlRv~d~~Gr~A 58 (393)
|+.||+ .+.|++.+.-. ..||+++|-....-..+ |+-+|. .=.|||-|+|.+|||-
T Consensus 26 V~rkGd~~AGaIlVk~~~~~dG~a~l~~~a~~~~g~r~w~~~~~~~~e~~~da~l~R~~rfDPDlWVVEiEdr~gr~f 103 (110)
T 4goq_A 26 VARKGDARAGAVLVKAVDRREGTARLFSEATRGDGERFWMQPVRSTFEPDLDAYAERAARIDPDIWVVEIEDRDGRHF 103 (110)
T ss_dssp EEECCCTTTCCEEEEEEETTTTEEEEEEEEECTTSCEEEECSCCCSSTHHHHHHHHHHHHHCTTCEEEEEEETTCCCC
T ss_pred EEeccCccCCeEEEEEeecCCccEEEEEecCCCCCCeeEEeeccCCChhhHHHHHHHHhccCCCeEEEEEEcCCCccc
Confidence 677775 67788655533 45898887432110111 111221 2369999999999973
No 12
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=30.23 E-value=25 Score=28.00 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=5.5
Q ss_pred ccCCcCCCCCceEEEeecc
Q psy1797 303 QELDLKFKEGETIKINMKI 321 (393)
Q Consensus 303 p~~D~SLKeGeTI~Ini~~ 321 (393)
-..++.|..+.+|+|.++.
T Consensus 17 ~t~~l~l~~~m~i~I~Vk~ 35 (101)
T 3m63_B 17 TTENLYFQGAMSLNIHIKS 35 (101)
T ss_dssp ------------CCEEEEC
T ss_pred cceeecccCCcEEEEEEEE
Confidence 3556788999999998863
No 13
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=30.14 E-value=22 Score=24.17 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.7
Q ss_pred hhhHHHHHHHhhhH
Q psy1797 351 VALQDHFKWLKKTE 364 (393)
Q Consensus 351 v~~q~~~~~l~~~~ 364 (393)
-|+|+||.||...+
T Consensus 9 ~aakdFv~WL~ngk 22 (31)
T 3c5t_B 9 EAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCC
Confidence 58999999999754
No 14
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=28.91 E-value=1.3e+02 Score=25.91 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=47.7
Q ss_pred eEEEEEEEeCCeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCCCCeEEEeeecCCCCcccchhHhh
Q psy1797 202 TGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVAL 281 (393)
Q Consensus 202 tGrlrV~~~g~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~GR~AfIGiGF~eRsdAFDFnVAL 281 (393)
.-.|.|...| |+|.|+.|++++...|+.. - ..+=.-....|||..=..|+ +.|+|.. |.....|=.-..+|
T Consensus 61 ~V~L~IS~~G----I~v~d~~tk~~~~~~~l~~-I-Sfca~d~~d~r~FafI~k~~-~~h~c~v--f~s~~~A~~I~~ti 131 (160)
T 1p3r_A 61 RIWVNISLSG----IKIIDEKTGVIEHEHPVNK-I-SFIARDVTDNRAFGYVCGGE-GQHQFFA--IKTGQQAEPLVVDL 131 (160)
T ss_dssp EEEEEEETTE----EEEEETTTCCEEEEECGGG-E-EEEEECTTCTTEEEEEESST-TCEEEEE--EEESSCSHHHHHHH
T ss_pred EEEEEEECCe----EEEEECCCCeEEEecccCe-E-EEEecCCCCCcEEEEEEecC-CEEEEEE--EccHHHHHHHHHHH
Confidence 3556665544 7888999999999999864 0 01111112357998877786 6999985 54444565555555
Q ss_pred HHHHH
Q psy1797 282 QDHFK 286 (393)
Q Consensus 282 qD~~K 286 (393)
-..+.
T Consensus 132 gqAF~ 136 (160)
T 1p3r_A 132 KDLFQ 136 (160)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 15
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=28.50 E-value=63 Score=27.25 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=54.6
Q ss_pred CeeEEEEEeCCCCceeeeCcccCCCCceeEEcccccceEEEEEec---CCCCeEEEeeeecCCCcccchhhhhhHH
Q psy1797 8 KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKD---DSGRQAFIGLGFSDRSDSFDLNVALQDH 80 (393)
Q Consensus 8 ~~~~I~LeD~~tGeLFA~~Pv~~~pg~aVE~V~DSSRYFVlRv~d---~~Gr~AfIGiGF~dR~dAFDFnvaLqD~ 80 (393)
..+.|.+-...+|.|-+.+++. |+..+.+...|.+.++.-..| +.+....+.|=|..-.+|=.|..++.++
T Consensus 58 ~k~RlvmR~d~~~kv~lN~~i~--~~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~~~e~ 131 (134)
T 1rrp_B 58 GKIRLLMRREQVLKICANHYIS--PDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEA 131 (134)
T ss_dssp CCCEEEEECTTTCCEEECCBCC--SSCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEEEcCCCcEEEEeEec--CCceEeecCCCCeEEEEEcccccCCCCceEEEEEEECCHHHHHHHHHHHHHH
Confidence 3556666655689999999987 567788877788988887775 3456778889998888888888887765
No 16
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=28.17 E-value=2e+02 Score=26.29 Aligned_cols=86 Identities=13% Similarity=0.200 Sum_probs=62.7
Q ss_pred eEEEEEEEeC--CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEE-ecC-CC--CeEEEeeecCCCCccc
Q psy1797 202 TGRMRLVTKD--KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRI-KDD-SG--RQAFIGLGFSDRSDSF 275 (393)
Q Consensus 202 tGrlrV~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV-~d~-~G--R~AfIGiGF~eRsdAF 275 (393)
+|-|||...- .++.|.+-...+|.|-++.++.. +.-+.+..-|-|.||.-+ .|- .| .-..+-|=|..=.+|=
T Consensus 98 vG~lkilk~ket~k~RllMR~d~~~kV~LN~~I~~--~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~ 175 (191)
T 3m1i_B 98 TGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAP--EYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENAD 175 (191)
T ss_dssp EEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCT--TCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHH
T ss_pred EEEEEEEEcCCCCeEEEEEEecCcceEEEeeecCC--CcEEeECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHH
Confidence 5779998753 45777777667899999999864 556667656668887775 452 34 3456778888888899
Q ss_pred chhHhhHHHHHHhh
Q psy1797 276 DLNVALQDHFKWLK 289 (393)
Q Consensus 276 DFnVALqD~~K~l~ 289 (393)
.|.-+++++.+.++
T Consensus 176 eF~~~~eeaq~~nk 189 (191)
T 3m1i_B 176 KFKEEFEKAQEINK 189 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988876543
No 17
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=28.13 E-value=53 Score=27.91 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=43.3
Q ss_pred CCccCCcCCCCCceEEEeecccccccccCCcccccccccCCC---CCCCcchhhhhHHHHHHHhhhHHHHHhhcCC----
Q psy1797 301 PKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSD---RSDSFDLNVALQDHFKWLKKTEEIEKEKEEP---- 373 (393)
Q Consensus 301 ~~p~~D~SLKeGeTI~Ini~~~kk~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~q~~~~~l~~~~~~~~~~~~p---- 373 (393)
...=.||.+++|.||++-+.-. +||-+.- ....+.+.|...+-|..||+ .++++..-|
T Consensus 73 ~~tL~~~~i~~~~~l~l~~~~~-------------gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~--~I~~~~gip~~~q 137 (172)
T 3u30_A 73 GRTLSDYNIQKESTLHLVLRLR-------------GGMQIFVKTLTGKTITLEVEPSDTIENVKA--KIQDKEGIPPDQQ 137 (172)
T ss_dssp TCBTGGGTCCTTCEEEEEECCC-------------CCEEEEEEESSCCEEEEEECTTCBHHHHHH--HHHHHHCCCGGGC
T ss_pred cCCHhHcCCcccceeeeeeccc-------------ccccceeecccCcceeEEecCCCCHHHHHH--HHHHHhCCCceeE
Confidence 3445689999999999987421 1111110 01223444444555666665 333332222
Q ss_pred ------------ccccccccccCceEEEEEe
Q psy1797 374 ------------KQELDLKFKEGETIKINMK 392 (393)
Q Consensus 374 ------------~~~~d~~~~~~~~~~~~~~ 392 (393)
..=-||++++|.||.+.++
T Consensus 138 ~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 138 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp CEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred EEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 2335899999999988765
No 18
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=25.58 E-value=2.4e+02 Score=23.88 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred eEEEEEEEeC------CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEEecCC-CCeEEEeeecCCCCcc
Q psy1797 202 TGRMRLVTKD------KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDS-GRQAFIGLGFSDRSDS 274 (393)
Q Consensus 202 tGrlrV~~~g------~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~~-GR~AfIGiGF~eRsdA 274 (393)
.|-|||...- .++-|.+-...++.|-+++++.. +..+.+. |.|++++...|.+ |.-....|=|..=.+|
T Consensus 39 ~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~--~m~~~~~--~~k~~~~~~~d~~d~~~~~~lirfk~~e~a 114 (138)
T 2y8g_A 39 RGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWA--QMQIDKA--SEKSIRITAMDTEDQGVKVFLISASSKDTG 114 (138)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCT--TCCEEEE--ETTEEEEECCC--CCCCCEEEEECCHHHHH
T ss_pred EEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecC--CceeecC--CCCEEEEEEecCCCCceEEEEEEECCHHHH
Confidence 6788888753 35667777777899999999964 5566654 5688888888874 3444777888776677
Q ss_pred cchhHhhHHHHHHhhhhhhh
Q psy1797 275 FDLNVALQDHFKWLKKTEEI 294 (393)
Q Consensus 275 FDFnVALqD~~K~l~~~~e~ 294 (393)
=-|. ++.++...++...+.
T Consensus 115 ~lf~-~~~~~i~~lk~~~~~ 133 (138)
T 2y8g_A 115 QLYA-ALHHRILALRSRVEQ 133 (138)
T ss_dssp HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhhccccc
Confidence 4444 676776666655544
No 19
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.77 E-value=2e+02 Score=24.05 Aligned_cols=81 Identities=10% Similarity=0.213 Sum_probs=51.8
Q ss_pred eEEEEEEEe-CCeeEEEEeeCCC-CceeeeCcccCCCCcceEEccccccceEEEEecC--CCC----eEEEeeecCCCCc
Q psy1797 202 TGRMRLVTK-DKECILKLEDRNS-GELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDD--SGR----QAFIGLGFSDRSD 273 (393)
Q Consensus 202 tGrlrV~~~-g~~~~I~LeD~~t-GeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV~d~--~GR----~AfIGiGF~eRsd 273 (393)
.|-|||... ..++.|.+--..| |.|-++..+.. +.-+++. .+-+.+++-+.++ .|. -.-+=|=|..=.+
T Consensus 35 vG~lki~~~k~~k~RllmR~d~~~~kv~lN~~i~~--~m~~~~~-g~~~~~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~ 111 (125)
T 2ec1_A 35 IGTLHLKPTANQKTQLLVRADTNLGNILLNVLIPP--NMPCTRT-GKNNVLIVCVPNPPIDEKNATMPVTMLIRVKTSED 111 (125)
T ss_dssp EEEEEEEECSSSSEEEEEEESSSSCCBSCCEECCS--SCCEECC-TTTEEEEEECCSSCSCSSSSSSCEEEEEECSSHHH
T ss_pred EEEEEeeecCCCcEEEEEEecCCCCEEEEeeEEcC--CCeEEec-CCCcEEEEEccCCcccCCCCCceEEEEEEECCHHH
Confidence 355666554 3455555554444 88888888863 5567776 5566666666443 343 4455577777778
Q ss_pred ccchhHhhHHHH
Q psy1797 274 SFDLNVALQDHF 285 (393)
Q Consensus 274 AFDFnVALqD~~ 285 (393)
|=.|..+|++|.
T Consensus 112 a~~f~~~~~e~k 123 (125)
T 2ec1_A 112 ADELHKILLEKK 123 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 888888888875
No 20
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=22.90 E-value=2.6e+02 Score=23.97 Aligned_cols=85 Identities=12% Similarity=0.189 Sum_probs=61.1
Q ss_pred eEEEEEEEeC--CeeEEEEeeCCCCceeeeCcccCCCCcceEEccccccceEEEE-ecC-CC--CeEEEeeecCCCCccc
Q psy1797 202 TGRMRLVTKD--KECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRI-KDD-SG--RQAFIGLGFSDRSDSF 275 (393)
Q Consensus 202 tGrlrV~~~g--~~~~I~LeD~~tGeLFA~cPv~~~~~~aVE~V~DSSRYFVLRV-~d~-~G--R~AfIGiGF~eRsdAF 275 (393)
+|-|||.... .++.|.+-...+|.+-++.++.. +-.+.+..-|-|-||.-+ .|- .| .-...-|=|..=.+|=
T Consensus 47 ~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~~--~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~ 124 (140)
T 4hat_B 47 TGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAP--EYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENAD 124 (140)
T ss_dssp EEEEEEEEETTTCCEEEEEECTTTCCEEEEEECCT--TCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHH
T ss_pred EEEEEEEEcCCCCeEEEEEEecCcceEEEEeEecC--CeEEeEcCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHH
Confidence 5788998643 45667777667899999999864 556666655667777654 442 33 4556778888888899
Q ss_pred chhHhhHHHHHHh
Q psy1797 276 DLNVALQDHFKWL 288 (393)
Q Consensus 276 DFnVALqD~~K~l 288 (393)
.|.-+++++.+..
T Consensus 125 ~f~~~~ee~~~~n 137 (140)
T 4hat_B 125 KFKEEFEKAQEIN 137 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887654
No 21
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.85 E-value=1.1e+02 Score=24.75 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.1
Q ss_pred ccCCCcEEEEee
Q psy1797 104 KFKEGETIKINM 115 (393)
Q Consensus 104 slKeGqTI~Ini 115 (393)
.|+.||+|++.|
T Consensus 67 ~~~~Gd~V~vkV 78 (119)
T 1wi5_A 67 KLKVGQYLNCIV 78 (119)
T ss_dssp CCCTTCEEEEEE
T ss_pred EeCCCCEEEEEE
Confidence 588999998877
No 22
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=22.09 E-value=53 Score=22.50 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=13.7
Q ss_pred ccCCcCCCCCceEEEee
Q psy1797 303 QELDLKFKEGETIKINM 319 (393)
Q Consensus 303 p~~D~SLKeGeTI~Ini 319 (393)
...++||++|+.|.|--
T Consensus 13 ~~~eLs~~~Gd~i~v~~ 29 (54)
T 2a28_A 13 GDDEISIDPGDIITVIR 29 (54)
T ss_dssp STTBCCBCTTCEEEEEE
T ss_pred CCCCccCCCCCEEEEEE
Confidence 34579999999999854
No 23
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=20.94 E-value=55 Score=31.04 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=12.7
Q ss_pred EEEEeCCeeEEE-EeeCCCCceeee
Q psy1797 206 RLVTKDKECILK-LEDRNSGELFAQ 229 (393)
Q Consensus 206 rV~~~g~~~~I~-LeD~~tGeLFA~ 229 (393)
+++-.|.--.|. ..+..||+.+|-
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAi 92 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFAL 92 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEE
T ss_pred ceeeeccCeEEEEEEECCCCCEEEE
Confidence 455555443333 356666766653
Done!