RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1797
(393 letters)
>gnl|CDD|219649 pfam07933, DUF1681, Protein of unknown function (DUF1681). This
family is composed of sequences derived from a number of
hypothetical eukaryotic proteins of unknown function.
Length = 158
Score = 206 bits (527), Expect = 5e-66
Identities = 80/134 (59%), Positives = 97/134 (72%), Gaps = 4/134 (2%)
Query: 190 RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRY 249
RAADW L EP WTGR+R+V K + LED ++GELFAQ P D+Y A+E V DSSRY
Sbjct: 27 RAADWKLDEPIWTGRLRVVEKGDRVSIVLEDPSTGELFAQAPYDSYN--AVEPVLDSSRY 84
Query: 250 FVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDL 307
FV+R++D +GR+AFIG+GF DRSD+FD NVALQDHFKW+K E K+KE E LDL
Sbjct: 85 FVIRVQDPTGRKAFIGIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDL 144
Query: 308 KFKEGETIKINMKI 321
KEGETI IN+
Sbjct: 145 SLKEGETITINLGG 158
Score = 179 bits (455), Expect = 3e-55
Identities = 68/119 (57%), Positives = 85/119 (71%), Gaps = 4/119 (3%)
Query: 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
+R+V K + LED ++GELFAQ P D+Y A+E V DSSRYFV+R++D +GR+AFI
Sbjct: 42 LRVVEKGDRVSIVLEDPSTGELFAQAPYDSYN--AVEPVLDSSRYFVIRVQDPTGRKAFI 99
Query: 61 GLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDLKFKEGETIKINMKI 117
G+GF DRSD+FD NVALQDHFKW+K E K+KE E LDL KEGETI IN+
Sbjct: 100 GIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDLSLKEGETITINLGG 158
Score = 99.7 bits (249), Expect = 4e-25
Identities = 41/65 (63%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE--LDLKFKEGETIK 388
GR+AFIG+GF DRSD+FD NVALQDHFKW+K E K+KE E LDL KEGETI
Sbjct: 94 GRKAFIGIGFEDRSDAFDFNVALQDHFKWVKNESEPSKQKESNDSEPKLDLSLKEGETIT 153
Query: 389 INMKI 393
IN+
Sbjct: 154 INLGG 158
>gnl|CDD|241382 cd13228, PHear_NECAP, NECAP (adaptin-ear-binding coat-associated
protein) Plextrin Homology (PH) fold with ear-like
function (PHear) domain. NECAPs are alpha-ear-binding
proteins that enrich on clathrin-coated vesicles (CCVs).
NECAP 1 is expressed in brain and non-neuronal tissues
and cells while NECAP 2 is ubiquitously expressed. The
PH-like domain of NECAPs is a protein-binding interface
that mimics the FxDxF motif binding properties of the
alpha-ear and is called PHear (PH fold with ear-like
function) domain. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 120
Score = 193 bits (494), Expect = 1e-61
Identities = 68/105 (64%), Positives = 85/105 (80%), Gaps = 4/105 (3%)
Query: 186 PQPS----RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIE 241
P+ S RAADW L++P WTGR+R+V K ++C ++LED N+GELFAQCP+D PG A+E
Sbjct: 16 PRASARGYRAADWGLEKPLWTGRLRVVAKGEKCEIRLEDPNTGELFAQCPVDVDPGTAVE 75
Query: 242 TVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFK 286
V DSSRYFVLR++D SGR AFIG+GF +RSD+FD NVALQDHFK
Sbjct: 76 PVVDSSRYFVLRVEDGSGRHAFIGIGFRERSDAFDFNVALQDHFK 120
Score = 164 bits (417), Expect = 4e-50
Identities = 55/82 (67%), Positives = 69/82 (84%)
Query: 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
+R+V K ++C ++LED N+GELFAQCP+D PG A+E V DSSRYFVLR++D SGR AFI
Sbjct: 39 LRVVAKGEKCEIRLEDPNTGELFAQCPVDVDPGTAVEPVVDSSRYFVLRVEDGSGRHAFI 98
Query: 61 GLGFSDRSDSFDLNVALQDHFK 82
G+GF +RSD+FD NVALQDHFK
Sbjct: 99 GIGFRERSDAFDFNVALQDHFK 120
Score = 65.7 bits (161), Expect = 3e-13
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFK 358
GR AFIG+GF +RSD+FD NVALQDHFK
Sbjct: 93 GRHAFIGIGFRERSDAFDFNVALQDHFK 120
>gnl|CDD|241235 cd00900, PH-like, Pleckstrin homology-like domain. The PH-like
family includes the PH domain, both the Shc-like and
IRS-like PTB domains, the ran-binding domain, the EVH1
domain, a domain in neurobeachin and the third domain
of FERM. All of these domains have a PH fold, but lack
significant sequence similarity. They are generally
involved in targeting to protein to the appropriate
cellular location or interacting with a binding
partner. This domain family possesses multiple
functions including the ability to bind inositol
phosphates and to other proteins.
Length = 88
Score = 42.8 bits (101), Expect = 1e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 12 LKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSD 69
L L D+ L + PI V SDS R VLR+KD ++ +G F + +
Sbjct: 27 LILRDKQDDRLKLKIPISDIVKVNPSRASDSDRALVLRLKD---KRESLGFSFKSKEE 81
Score = 42.8 bits (101), Expect = 1e-05
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 216 LKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSD 273
L L D+ L + PI V SDS R VLR+KD ++ +G F + +
Sbjct: 27 LILRDKQDDRLKLKIPISDIVKVNPSRASDSDRALVLRLKD---KRESLGFSFKSKEE 81
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 37.5 bits (87), Expect = 0.011
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 66 DRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKKDGADG 125
SD + A+ + +WL+K + EKE+ E KQ KE E++ N +TK A G
Sbjct: 565 SDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQ------KEVESV-CNPIMTKMYQAAG 617
Query: 126 QGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVN 168
G P GG+ PG P A + + + +V+
Sbjct: 618 GGMPGGMP---GGMPGGMPGGAG----PAGAGASSGPTVEEVD 653
>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein,
Palmitoylated 1 (or MAGUK p55 subfamily member 1).
MPP1, also called 55 kDa erythrocyte membrane protein
(p55), is a ubiquitously-expressed scaffolding protein
that plays roles in regulating neutrophil polarity, cell
shape, hair cell development, and neural development and
patterning of the retina. It was originally identified
as an erythrocyte protein that stabilizes the actin
cytoskeleton to the plasma membrane by forming a complex
with 4.1R protein and glycophorin C. MPP1 is one of
seven vertebrate homologs of the Drosophila Stardust
protein, which is required in establishing cell
polarity, and it contains the three domains
characteristic of MAGUK (membrane-associated guanylate
kinase) proteins: PDZ, SH3, and guanylate kinase (GuK).
In addition, it also contains the Hook (Protein 4.1
Binding) motif in between the SH3 and GuK domains. The
GuK domain in MAGUK proteins is enzymatically inactive;
instead, the domain mediates protein-protein
interactions and associates intramolecularly with the
SH3 domain. SH3 domains are protein interaction domains
that bind to proline-rich ligands with moderate affinity
and selectivity, preferentially to PxxP motifs. They
play versatile and diverse roles in the cell including
the regulation of enzymes, changing the subcellular
localization of signaling pathway components, and
mediating the formation of multiprotein complex
assemblies.
Length = 62
Score = 30.3 bits (68), Expect = 0.21
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 97 PKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPP 143
P +E LKF+ G+ I+I I K D QG+ + + GL+P P
Sbjct: 17 PCKEAGLKFQTGDIIQI---INKDDSNWWQGRVEGSGEESAGLIPSP 60
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 32.5 bits (74), Expect = 0.34
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 117 ITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSK---ISPPPAPSQNSS 162
D D + +S+ PP SG SK +PPP+PS +SS
Sbjct: 216 QASADLDDSAALSLFVLSSS-----PPSSSGASKEASATPPPSPSMSSS 259
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 32.6 bits (74), Expect = 0.42
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 123 ADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAP 182
A S G LPPP + + PPP P S P+ A GD P
Sbjct: 2811 VLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG---GDVRRRPP 2867
Query: 183 APAPQPSRAA 192
+ +P AA
Sbjct: 2868 SRSPAAKPAA 2877
Score = 31.8 bits (72), Expect = 0.80
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
PPPP P P +++P+ A A AAPAP P+ A
Sbjct: 2701 PPPPPP---TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749
Score = 31.1 bits (70), Expect = 1.4
Identities = 11/62 (17%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 131 TRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSR 190
RP + P G PP P + AN P +P
Sbjct: 2596 ARPRAPVDDRGDPRGPAPPS-PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654
Query: 191 AA 192
Sbjct: 2655 DP 2656
Score = 30.3 bits (68), Expect = 2.5
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 132 RPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPA-----PAP 186
P + P PPG ++ + P P+ + P A G A P PAP
Sbjct: 2711 APHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPATPGGPARPARPPTTAGPPAP 2769
Query: 187 QPSRA 191
P A
Sbjct: 2770 APPAA 2774
Score = 28.4 bits (63), Expect = 8.6
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 133 PTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
P G P + + PP P + ++P WG + AP P P
Sbjct: 259 PVVGEGADRAPETA--RGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPP 316
Query: 193 D 193
Sbjct: 317 P 317
>gnl|CDD|224363 COG1446, COG1446, Asparaginase [Amino acid transport and
metabolism].
Length = 307
Score = 31.9 bits (73), Expect = 0.52
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 77 LQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITKKDGA---DGQGKAKTRP 133
D F ++ E ++ E++ KQ LD K E + GA D G
Sbjct: 134 EYDPFTEERRAEWLQAERDAKKQVLD-HSKTYEEPEDPDSKHGTVGAVALDADGNLAA-A 191
Query: 134 TSTGGLLPPPPG 145
TSTGG+ PG
Sbjct: 192 TSTGGVFLKRPG 203
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 31.4 bits (72), Expect = 0.91
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 122 GADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAA 181
GA G A GG+ + S P S + ++ T
Sbjct: 327 GAAGGSGAAGVAAGLGGVARAGASAAAS-----PLRRAASRAAESMKSSFRAGARSTGGG 381
Query: 182 PAPAPQPSRAADWNLQEPQWTGRMR 206
A + A P W RM+
Sbjct: 382 AGGAAAAAAAGAAAAGPPAWAKRMK 406
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 31.2 bits (71), Expect = 1.1
Identities = 17/89 (19%), Positives = 25/89 (28%), Gaps = 9/89 (10%)
Query: 122 GADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAA 181
A A + P + S + PPA + +P+ A A A
Sbjct: 385 EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP-PAPVAAPAAAAP--------A 435
Query: 182 PAPAPQPSRAADWNLQEPQWTGRMRLVTK 210
APA P+ A Q +
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPV 464
>gnl|CDD|222483 pfam13971, MEI4-Rec24, Microtubule-binding domain of katanin. This
is the C-terminal domain of katanin - a heterodimeric
micro-tubule severing ATPase. Katanin is found localised
at mitotic spindle bodies. This domain binds
microtubules by interacting specifically with the
N-terminal domain of p60 katanin.
Length = 375
Score = 31.0 bits (70), Expect = 1.2
Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 14/111 (12%)
Query: 282 QDHFKWLKKTEEIEKEKEEPKQELDL--------KFKEGETIK--INMKITVSTYTLGLG 331
QD W KK E +E E + +QEL K ++ T S L
Sbjct: 53 QDE-GWKKKAELLEAEPLQLRQELLKNRNSAGCAKSGAKVFPAKLLDQDPTSSENDETLL 111
Query: 332 RQAFIGLGFSDRSDSF---DLNVALQDHFKWLKKTEEIEKEKEEPKQELDL 379
+ S R D+ H ++L+ E++ E Q+ DL
Sbjct: 112 EELGPTPPNSQRVPKRPQADIENPFSSHMQFLQCLLELKTLTESVYQKADL 162
>gnl|CDD|219055 pfam06484, Ten_N, Teneurin Intracellular Region. This family is
found in the intracellular N-terminal region of the
Teneurin family of proteins. These proteins are
'pair-rule' genes and are involved in tissue patterning,
specifically probably neural patterning. The
intracellular domain is cleaved in response to
homophilic interaction of the extracellular domain, and
translocates to the nucleus. Here it probably carries
out to some transcriptional regulatory activity. The
length of this region and the conservation suggests that
there may be two structural domains here (personal obs:C
Yeats).
Length = 370
Score = 30.4 bits (68), Expect = 1.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 152 SPPPAPSQNSSPIHQ-VNANANNWGDFTS-AAPAPAPQPSRA 191
+PP S + SP H + N+ N ++T + P+PAP S
Sbjct: 244 TPPLPLSHSHSPSHHAASINSLNRSNYTQRSNPSPAPTDSST 285
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 30.6 bits (69), Expect = 1.5
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 11/68 (16%)
Query: 127 GKAKTRP-TSTGGLLP----PPPGSGMSKISPPPAPSQNSSPIHQVNA------NANNWG 175
G A + P G P PPP + +PP P + + ++ +A G
Sbjct: 908 GDAASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRETLADLRSAQRSG 967
Query: 176 DFTSAAPA 183
DFT+ A
Sbjct: 968 DFTAYGAA 975
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 30.8 bits (69), Expect = 1.6
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 123 ADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAP 182
+D + + + PPG+ ++ +PPP PS + P G +A P
Sbjct: 164 SDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQ---------GSPIAAQP 214
Query: 183 APAPQP 188
AP PQ
Sbjct: 215 APQPQQ 220
Score = 29.7 bits (66), Expect = 3.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 142 PPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
PP S P Q+ H + G + P P+ S A
Sbjct: 432 PPKASTHPHSGLHSGPPQSPFAQHPFTS-----GGLPAIGPPPSLPTSTPA 477
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 30.7 bits (69), Expect = 1.8
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 133 PTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
P+S G+ PP GMS + +PS S + + + P+ +P P A
Sbjct: 335 PSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTG-SGKGEPASESTPSTSPPPPGLA 393
Query: 193 DWNLQEPQWTGR 204
D ++ T
Sbjct: 394 DDIVRAIFATSS 405
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 30.1 bits (68), Expect = 2.1
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 126 QGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPA 185
+ A P++ G P + + PP P + A PAPA
Sbjct: 378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAA-------------ARPAPA 424
Query: 186 PQPSRAA 192
P P AA
Sbjct: 425 PAPPAAA 431
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 30.5 bits (69), Expect = 2.1
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTS--------AAPAPAPQPSRAA 192
P P G P S +SS + ++++ + +S +P+ +P PSR
Sbjct: 298 PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP 357
Query: 193 DWN 195
Sbjct: 358 PPA 360
Score = 29.4 bits (66), Expect = 4.1
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 125 GQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAP 184
+ PT G P PP SPPP+P+ + S + + + S A
Sbjct: 98 ASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLR-PVGSPGPPPAASPPAAG 156
Query: 185 APQPSRAAD 193
A + A+D
Sbjct: 157 ASPAAVASD 165
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 30.2 bits (68), Expect = 2.3
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 89 EIEKEKEEPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPP----PP 144
E+EKE + + E+D + +E E +IT+++ + ++ L PP
Sbjct: 502 ELEKELQRQETEVDAQAQEEEAAAAK-EITEEENVLAKAVESKTSITSSDLSESQQFYPP 560
Query: 145 GSGMSKISPPPAPSQNSSP 163
G M +S PP+ S+N
Sbjct: 561 GRIMHIVSMPPSDSENDDD 579
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional.
Length = 141
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 126 QGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPA 185
A P + P + P P+ +P V A A + P+
Sbjct: 83 TPPAPPEPVTPPT--AQSPAPAVPTPPPTSTPAVPPAPAAAVPAPA------AAPPPSDP 134
Query: 186 PQPSRA 191
PQP RA
Sbjct: 135 PQPPRA 140
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.8 bits (67), Expect = 2.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 124 DGQGKAKTRPTSTGGLLP-PPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAP 182
D RP P PPPG+G P P ++ +P+ + + +A P
Sbjct: 212 DHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPI---RPSAPGPLAAQP 268
Query: 183 APAPQP 188
APAP P
Sbjct: 269 APAPGP 274
>gnl|CDD|166070 PLN02429, PLN02429, triosephosphate isomerase.
Length = 315
Score = 29.4 bits (65), Expect = 3.0
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 13/134 (9%)
Query: 139 LLPPPPGSGMSKISP---PPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWN 195
L PP SG+ +ISP A S + S H+VN++ +S+ +P + A
Sbjct: 6 LTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAMAGSGK 65
Query: 196 LQEPQWTGRMRLVTKDKECILKL-EDRNSGELFAQCPIDTYPG-VAIETVSDSSRYFVLR 253
K+ I KL D NS L A + P V I+ V S R
Sbjct: 66 FFVGGNWKC----NGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSS---LTDR 118
Query: 254 IKDDSGRQAFIGLG 267
I D SG+ +++G G
Sbjct: 119 I-DISGQNSWVGKG 131
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 29.9 bits (68), Expect = 3.1
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 15/73 (20%)
Query: 120 KDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTS 179
G+ A + P + +K PAP+ ++ +
Sbjct: 37 GPGSTAAPTAAAAAAAAAA--SAPAAAPAAKAPAAPAPAPPAAAA-------------PA 81
Query: 180 AAPAPAPQPSRAA 192
A P PA + AA
Sbjct: 82 APPKPAAAAAAAA 94
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 29.5 bits (66), Expect = 3.6
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 132 RPTSTGGLLPPPPGS--GMSKISPPPAPSQNSSPIHQVNANANNWGDFT------SAAPA 183
G + PPPP S G+ S APS +S+P +++ + N SA PA
Sbjct: 179 GGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA 238
Query: 184 PAPQPS 189
P P
Sbjct: 239 SIPAPP 244
>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional.
Length = 521
Score = 29.5 bits (67), Expect = 4.1
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 41 DSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE 100
DSS VL + + F G + NV D + + + + +
Sbjct: 72 DSSPPVVL-LSPSTEHPYFAQSGLTGAD--GPDNVPNPDRTLYTADGDSLVLADGQNELP 128
Query: 101 LDLKFKEGETIKINMKITKKDG 122
+ L + G + T G
Sbjct: 129 VTLTWTNGNGLTFTKTYTLDRG 150
Score = 29.1 bits (66), Expect = 5.4
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 245 DSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQE 304
DSS VL + + F G + NV D + + + + +
Sbjct: 72 DSSPPVVL-LSPSTEHPYFAQSGLTGAD--GPDNVPNPDRTLYTADGDSLVLADGQNELP 128
Query: 305 LDLKFKEGETIKINMKITV 323
+ L + G + T+
Sbjct: 129 VTLTWTNGNGLTFTKTYTL 147
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 29.0 bits (65), Expect = 4.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 73 LNVALQDHFK-WLKKTEEIEKE--KEEPKQELDLKFKEGETIKINMKITKKDG 122
L LQ+ + W K +++K+ KE K ++K K +TI++ K K G
Sbjct: 98 LVNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGKG 150
>gnl|CDD|219262 pfam07001, BAT2_N, BAT2 N-terminus. This family represents the
N-terminus (approximately 200 residues) of the
proline-rich protein BAT2. BAT2 is similar to other
proteins with large proline-rich domains, such as some
nuclear proteins, collagens, elastin, and synapsin.
Length = 189
Score = 28.7 bits (64), Expect = 4.2
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 114 NMKITKKDGADGQGKAKTRPTSTGGLLP-------PPPGSGMSKISPPPAPSQNSSPIHQ 166
N+ + KDG K + LP PP S S SPPP P +
Sbjct: 76 NVSLVPKDGTGWASKQDQSDPKSSDALPPQTPESQPPAVSQTSASSPPPPPQPATPL--- 132
Query: 167 VNANANNWGDFTSAAPAP 184
V A +W ++ A
Sbjct: 133 VPGGAKSWAVASAKPGAQ 150
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.3 bits (65), Expect = 4.2
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 290 KTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDL 349
K EE++K +EE K+ LK KE E K ++ + + D+ + +
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 350 NVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIK 388
A +D K E ++KE EE K+ +LK KE E K
Sbjct: 1681 KKAEEDE---KKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 28.2 bits (63), Expect = 4.2
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 122 GADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSP 163
G G S+ P PG G + P AP +SS
Sbjct: 1 STGGDGTGGVSSGSSAPAPPAGPGPGPNAPPAPAAPGVDSSA 42
>gnl|CDD|236504 PRK09418, PRK09418, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 780
Score = 29.3 bits (65), Expect = 4.3
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 107 EGETIKINMKITKKDGAD---GQGKAKTRPTSTGGL----LPPPPGSGMSKISPPPAPSQ 159
E E K + ITKK+ D G T PT G PP G G + +P P+
Sbjct: 642 ENEFAKYAIDITKKNDDDKETGGENPTTPPTGEGDNGENPTTPPTGEGNNGENPTTPPTG 701
Query: 160 NSSPIHQVNANANNWGDFTSAA 181
+ + + G+ +
Sbjct: 702 EGNNGGNPTTPSTDEGNNAGSG 723
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.9 bits (65), Expect = 4.3
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 67 RSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIK--INMKITKKDGAD 124
R D+N L+ F+ KK EE E+E++E + E E + + + ++ D D
Sbjct: 163 RRADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEED 222
Query: 125 GQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPI 164
+ S+ P P S + K + + + +SS
Sbjct: 223 NDNTPSPKSGSSS---PAKPTSILKKSAAKRSEAPSSSKA 259
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 28.9 bits (64), Expect = 5.1
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 137 GGLLPPPPGSGMSKISPPPAP--SQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADW 194
G P SG + P P Q ++P + ++ A PAP+ PS W
Sbjct: 382 SGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSA-----APATPAPSAAPSPRVPW 436
Query: 195 NLQEP 199
+ P
Sbjct: 437 DDAPP 441
>gnl|CDD|218632 pfam05549, Allexi_40kDa, Allexivirus 40kDa protein.
Length = 271
Score = 28.6 bits (64), Expect = 5.6
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQ 166
P + S P S S PI+Q
Sbjct: 145 LAGPSVSPTPASSHPTASDRSLPIYQ 170
>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of
Calcium/calmodulin-dependent Serine protein Kinase.
CASK is a scaffolding protein that is highly expressed
in the mammalian nervous system and plays roles in
synaptic protein targeting, neural development, and gene
expression regulation. CASK interacts with many
different binding partners including parkin, neurexin,
syndecans, calcium channel proteins, caskin, among
others, to perform specific functions in different
subcellular locations. Disruption of the CASK gene in
mice results in neonatal lethality while mutations in
the human gene have been associated with X-linked mental
retardation. Drosophila CASK is associated with both
pre- and postsynaptic membranes and is crucial in
synaptic transmission and vesicle cycling. CASK contains
an N-terminal calmodulin-dependent kinase (CaMK)-like
domain, two L27 domains, followed by the core of three
domains characteristic of MAGUK (membrane-associated
guanylate kinase) proteins: PDZ, SH3, and guanylate
kinase (GuK). In addition, it also contains the Hook
(Protein 4.1 Binding) motif in between the SH3 and GuK
domains. The GuK domain in MAGUK proteins is
enzymatically inactive; instead, the domain mediates
protein-protein interactions and associates
intramolecularly with the SH3 domain. SH3 domains are
protein interaction domains that bind to proline-rich
ligands with moderate affinity and selectivity,
preferentially to PxxP motifs. They play versatile and
diverse roles in the cell including the regulation of
enzymes, changing the subcellular localization of
signaling pathway components, and mediating the
formation of multiprotein complex assemblies.
Length = 62
Score = 26.4 bits (58), Expect = 5.7
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 97 PKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPP 143
P ++ ++F+ G+ ++I I+K D Q K + T GL+P P
Sbjct: 17 PCKQAGIRFRVGDILQI---ISKDDHNWWQAKLENSKNGTAGLIPSP 60
>gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl
carrier protein subunit; Validated.
Length = 153
Score = 27.9 bits (62), Expect = 5.9
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 138 GLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAAD 193
G+ + +P PAP+ S+P A APAP P+ A +
Sbjct: 42 GIDLSAVQEQVPTPAPAPAPAVPSAPT-------------PVAPAAPAPAPASAGE 84
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 28.7 bits (65), Expect = 6.6
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 137 GGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
G P G G P ++ A G + A P + AA
Sbjct: 390 GPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAA 445
>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1. This region is found
in some of the Diaphanous related formins (Drfs). It
consists of low complexity repeats of around 12
residues.
Length = 160
Score = 27.6 bits (61), Expect = 6.9
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 10/52 (19%)
Query: 137 GGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQP 188
G+ PPPP + PPP P S P F PA P
Sbjct: 119 PGVPPPPPPFPGAPGIPPPPPGMGSPPPPP----------FGFGVPAAPVLP 160
Score = 27.6 bits (61), Expect = 8.6
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 127 GKAKTRPTSTGGLLPPPPGSGMSKISPPPAP 157
G P G PPPP G + P P
Sbjct: 130 GAPGIPPPPPGMGSPPPPPFGFGVPAAPVLP 160
Score = 27.2 bits (60), Expect = 9.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 138 GLLPPPPGSGMSKISPPPAP 157
G+ PPPP G + I PPP P
Sbjct: 83 GIPPPPPLPGGAGIPPPPPP 102
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.8 bits (65), Expect = 6.9
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 133 PTSTGGLLPPPPGSGMSKISPPPAPSQNSS--PIHQVNANANNWGDFTSAAPAPAPQPSR 190
+ G P + +P AP+ ++ A A + APAPAP P
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ--PAPAPAPAPAPPS 443
Query: 191 AADWNLQEPQWTGR 204
A +
Sbjct: 444 PAGNAPAGGAPSPP 457
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 27.7 bits (62), Expect = 6.9
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 152 SPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEP 199
PPPA + + + A +P P + A EP
Sbjct: 59 PPPPASAITNGGPPPPPPAR-------AEAASPPPPEAPAEPPAEPEP 99
>gnl|CDD|224705 COG1792, MreC, Cell shape-determining protein [Cell envelope
biogenesis, outer membrane].
Length = 284
Score = 28.1 bits (63), Expect = 7.0
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 10/110 (9%)
Query: 240 IETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFD-------LNVALQDHFKWLKKTE 292
I V + V + F+ D L L + + L++ E
Sbjct: 36 IRQVVGTVLSPVQSVVAAPFE--FVDGVLEFLKSLKDLALENEELKKELAELEQLLEEVE 93
Query: 293 EIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSD 342
+E+E + K+ LD K + I ++ +S + I G +D
Sbjct: 94 SLEEENKRLKELLDFKESSSDYDPIAARV-ISRSPDPWSQTIVIDKGSND 142
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 28.5 bits (63), Expect = 7.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 143 PPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNL------ 196
PP M+ +S +QN SP Q + + +F + PQ ++ L
Sbjct: 212 PPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL 271
Query: 197 QEPQWTGRMRLVTKDKECILKLED 220
+E T M L+ + K+ + +L++
Sbjct: 272 RERPPTVIMDLIQRTKDAVRELDN 295
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824). This is
a repeating domain found in fungal proteins. It is
proline-rich, and the function is not known.
Length = 135
Score = 27.2 bits (60), Expect = 8.6
Identities = 14/56 (25%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAP---APQPSRAAD 193
PPPPGS P + A P AP+P RA +
Sbjct: 78 PPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNYPYPPGPGQDPYAPRPRRADE 133
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.3 bits (64), Expect = 8.7
Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 284 HFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINM------KITVSTYTLGLGRQAFIG 337
+ +K E++++E+++ +E + + ++ I +I L G A +
Sbjct: 550 KEELEEKKEKLQEEEDKLLEEAEKEAQQ----AIKEAKKEADEIIKELRQLQKGGYASVK 605
Query: 338 LGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKI 389
L + K L K E +++K++ ++E + K G+ +K
Sbjct: 606 AH------------ELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKY 645
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like
subfamily. Argonaute is the central component of the
RNA-induced silencing complex (RISC) and related
complexes. The PIWI domain is the C-terminal portion of
Argonaute and consists of two subdomains, one of which
provides the 5' anchoring of the guide RNA and the
other, the catalytic site for slicing.
Length = 426
Score = 28.0 bits (63), Expect = 9.1
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 176 DFTSAAPAPAPQ-PSRAA-----DWNLQEPQWTGRMRLVTKDKECILKLED 220
D T +P PS AA DW+L Q+ +RL + +E I LE
Sbjct: 205 DVTHPSPGDPAGAPSIAAVVASVDWHLA--QYPASVRLQSHRQEIIDDLES 253
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 27.6 bits (61), Expect = 9.2
Identities = 9/53 (16%), Positives = 12/53 (22%)
Query: 135 STGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQ 187
G PP SG + P N S ++ P
Sbjct: 91 QDMGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPPSSNKVPVVQPPHHVHPLTP 143
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 28.1 bits (63), Expect = 9.4
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 133 PTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAA 192
P+S PPP + SPPP P+ P Q ++A P P + A
Sbjct: 216 PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQV------PPLSTAKPTPPSASATPA 269
Query: 193 DWNLQEPQWTGRMRLVTK 210
T + K
Sbjct: 270 ----PIGGITLDDDAIAK 283
>gnl|CDD|177328 PHA01929, PHA01929, putative scaffolding protein.
Length = 306
Score = 27.7 bits (61), Expect = 9.6
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 140 LPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNW---GDFTSAAPAPAPQP 188
LPP ++ + P AP+ +P+ Q A A P PQP
Sbjct: 8 LPPGLAGLVANVPPAAAPTPQPNPVIQPQAPVQPGQPGAPQQLAIPTQQPQP 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0828 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,999,343
Number of extensions: 1960070
Number of successful extensions: 3061
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2980
Number of HSP's successfully gapped: 101
Length of query: 393
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 294
Effective length of database: 6,546,556
Effective search space: 1924687464
Effective search space used: 1924687464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.7 bits)