RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1797
(393 letters)
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: b.55.1.11
Length = 133
Score = 179 bits (456), Expect = 5e-56
Identities = 66/109 (60%), Positives = 89/109 (81%)
Query: 182 PAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIE 241
P + + RA+DW L +P WTGR+R+ +K K +KLED+ SGELFAQ P++ YPG+A+E
Sbjct: 24 PRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVE 83
Query: 242 TVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 290
TV+DSSRYFV+RI+D +GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 84 TVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132
Score = 151 bits (382), Expect = 4e-45
Identities = 55/86 (63%), Positives = 74/86 (86%)
Query: 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
+R+ +K K +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47 LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106
Query: 61 GLGFSDRSDSFDLNVALQDHFKWLKK 86
G+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQ 132
Score = 65.3 bits (159), Expect = 3e-13
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 329 GLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 362
G GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 99 GTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 6e-05
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 7 DKECILKLEDRNSGELFAQCPIDTYPGVAIE-TV 39
+K+ + KL+ S +L+A D+ P +AI+ T+
Sbjct: 18 EKQALKKLQ--ASLKLYA--D-DSAPALAIKATM 46
Score = 41.9 bits (97), Expect = 6e-05
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 211 DKECILKLEDRNSGELFAQCPIDTYPGVAIE-TV 243
+K+ + KL+ S +L+A D+ P +AI+ T+
Sbjct: 18 EKQALKKLQ--ASLKLYA--D-DSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 3e-04
Identities = 53/457 (11%), Positives = 112/457 (24%), Gaps = 170/457 (37%)
Query: 1 MRLVTKDKECILKLED---RNSGELFAQCPIDTYPGVAIETVSDSSRYFV--------LR 49
++ + + L+ + ++ + + I ++ R + L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 50 IKDDSGRQAFIGLGFSDRS--DSFDLNVALQDHFKWLKKTEEIE--------KEKEEPKQ 99
+ + + ++F+L+ K L T +
Sbjct: 249 VLLN----------VQNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLD 292
Query: 100 ELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQ 159
+ E + +K D LP + +P
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQD---------------LPRE----VLTTNP------ 327
Query: 160 NSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQW--TGRMRLVTKDKECILK 217
+ + + + + W+ W +L T + +
Sbjct: 328 --RRLSIIAESIRDG-------------LAT---WD----NWKHVNCDKLTTIIESSLNV 365
Query: 218 LEDRNSGELFAQCPIDTYP-GVAI------------------------------------ 240
LE ++F + + +P I
Sbjct: 366 LEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 241 ETVSDSSRYFVLRIKDDSGRQ---AFIG-LGFSDRSDSFDLNVALQD---------HFKW 287
T+S S Y L++K ++ + + DS DL D H
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--- 480
Query: 288 LKKTEEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSF 347
LK E E+ LD +F + KI R ++
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRF-------LEQKI----------RHD--STAWNASGSIL 521
Query: 348 DLNVALQDHFKWLKKTEE-IEKEKEEPKQELD--LKF 381
+ LQ LK + I + ++ ++ L F
Sbjct: 522 NT---LQQ----LKFYKPYICDNDPKYERLVNAILDF 551
Score = 34.4 bits (78), Expect = 0.078
Identities = 53/372 (14%), Positives = 102/372 (27%), Gaps = 122/372 (32%)
Query: 56 RQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKF-------KEG 108
AF+ D+FD +QD K + EEI+ K+
Sbjct: 26 EDAFV--------DNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 109 ETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPP-APSQNSSP-IHQ 166
E ++ + +L MS I PS + I Q
Sbjct: 77 EMVQKFV---------------------EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 167 VNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGEL 226
+ + D A R++ K ++ +L+L R + +
Sbjct: 116 RD---RLYNDNQVFAKYNVS-----------------RLQPYLKLRQALLEL--RPAKNV 153
Query: 227 FAQCPIDTYPG-----VAIETVSDSSRYFVLRIKDDSGRQAF-IGLGFSDRSDS------ 274
ID G VA++ +++ + F + L + ++
Sbjct: 154 L----IDGVLGSGKTWVALDVCLSY------KVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 275 -----FDLN-VALQDHFKWLKKTEEIEKEKEEPKQELDLKFKE---------------GE 313
D N + DH + I+ + EL K +
Sbjct: 204 KLLYQIDPNWTSRSDH------SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 314 TIK---INMKITVST----YTLGLGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEEI 366
++ KI ++T T L + S + + K+L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----- 312
Query: 367 EKEKEEPKQELD 378
+ ++ P++ L
Sbjct: 313 CRPQDLPREVLT 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 56/368 (15%), Positives = 109/368 (29%), Gaps = 139/368 (37%)
Query: 21 ELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDH 80
+L+ TY + + + S+ I+ + G +
Sbjct: 175 DLY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--------------NI 215
Query: 81 FKWLKKTEEIEKEKEEPKQE-LDLKFKEGETIKINMK-----------ITKKDGADGQGK 128
+WL+ P ++ L +I I+ +T
Sbjct: 216 LEWLENPSNT------PDKDYLL-------SIPISCPLIGVIQLAHYVVT---------- 252
Query: 129 AKTRPTSTGGLLPPPPG-SGMSK--ISPPPAPSQNSSPIHQVNANANNWGDFTSAA---- 181
AK + G L G +G S+ ++ + I A ++W F +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVT--------AVAI----AETDSWESFFVSVRKAI 300
Query: 182 --------------PAPAPQPSRAADWNLQEPQWTGR-----MRLVTKD--KECILKLED 220
P + PS L++ M L + +E + +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPS-----ILEDSLENNEGVPSPM-LSISNLTQEQVQDYVN 354
Query: 221 RNSGELFAQCPIDTYPGVAIETVSDSSRYFVL---------------RIKDDSGR-QAFI 264
+ + L P V I ++ + ++ V+ + K SG Q+ I
Sbjct: 355 KTNSHL----PAGKQ--VEI-SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 265 GLGFSDR----SDSFDLNVALQDHFKWLKKTEEIEKEKEEPKQELDLKFKEGETIKINMK 320
FS+R S+ F L VA H L ++ + + K + K+ ++
Sbjct: 408 --PFSERKLKFSNRF-LPVASPFHSHLLVPASDLINK-DLVKNNVSFNAKD-------IQ 456
Query: 321 ITV-STYT 327
I V T+
Sbjct: 457 IPVYDTFD 464
Score = 33.9 bits (77), Expect = 0.12
Identities = 83/466 (17%), Positives = 140/466 (30%), Gaps = 159/466 (34%)
Query: 21 ELFAQCPIDTYPGVAIETVSDSSRY--FVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQ 78
E FA D P E V ++ +V + + S F + LN+ L
Sbjct: 46 EGFAA---DDEPTTPAELVG---KFLGYVSSLVEPSKVGQFDQV----------LNLCLT 89
Query: 79 DHF--KWLKKTE--------EIEKEKEEPKQELDLK-FKEGETIKINMKITK-------- 119
F +L+ + E + K + +K + + K
Sbjct: 90 -EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM-AKRPFDKKSNSALFR 147
Query: 120 --KDGAD-------GQGKA-----------KTRPTSTGGLLPPPPGSGMSKISPPPAPSQ 159
+G GQG +T G L+ +S +
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI----KFSAETLSELIRTTL 203
Query: 160 NSSPIHQVNANANNWGDFTSAAP-----APAPQPSRAADWNL----QEPQWTGRMRLVTK 210
++ + N W + S P P L Q + +VT
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-----ISCPLIGVIQLAHY-----VVT- 252
Query: 211 DKECILKLEDRNSGELFAQ------CPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQA-- 262
KL GEL + VAI +DS F S R+A
Sbjct: 253 -----AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESF-----FVSVRKAIT 301
Query: 263 ---FIGL----GFSDRS-------DSFDLN-------VALQDHFKWLKKTEEIEKEKEEP 301
FIG+ + + S DS + N +++ + L + E+++ +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN----LTQ-EQVQDYVNKT 356
Query: 302 KQELDLKFKEGETIKI-------NMKIT---VSTYTLGLG-RQAFIGLG-------FSDR 343
L G+ ++I N+ ++ S Y L L R+A G FS+R
Sbjct: 357 NSHLP----AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 344 ----SDSFDLNVALQDHFKWLKK-TEEIEKEKEEPKQEL---DLKF 381
S+ F L VA H L ++ I K+ + D++
Sbjct: 413 KLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 33.6 bits (76), Expect = 0.12
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 1/83 (1%)
Query: 127 GKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAP 186
G + + GL+P + S A S + +H + APA
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDP-APPPPPAPAAGN 60
Query: 187 QPSRAADWNLQEPQWTGRMRLVT 209
P ++ + G T
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGT 83
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 27.3 bits (60), Expect = 0.83
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 141 PPPPGSGMSKISPPP 155
PPPP G++ I PPP
Sbjct: 3 PPPPLPGVASIPPPP 17
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 30.6 bits (68), Expect = 1.2
Identities = 6/49 (12%), Positives = 10/49 (20%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPS 189
P ++ PP P+ Q+ P
Sbjct: 19 NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67
Score = 30.2 bits (67), Expect = 1.6
Identities = 10/60 (16%), Positives = 13/60 (21%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQ 200
P P+ P V A QPS A N++
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Score = 29.0 bits (64), Expect = 3.2
Identities = 9/76 (11%), Positives = 15/76 (19%)
Query: 125 GQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAP 184
GQ + + P +GMS P + Q
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 185 APQPSRAADWNLQEPQ 200
+ N+
Sbjct: 77 TTSMNDMHLHNVPLVD 92
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 30.0 bits (67), Expect = 1.2
Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 41/177 (23%)
Query: 46 FVLRIKDDSGRQAFIG--LGFSDRSDSFDLNVALQD--HFKWLKKTEEIEKEKEEPKQEL 101
+ +R GR FIG F D+ +N+ L D F+ +K + E+EE K+ L
Sbjct: 15 YRMRCILQDGRI-FIGTFKAF-DK----HMNLILCDCDEFRKIKPKNSKQAEREE-KRVL 67
Query: 102 DLKFKEGETIKINMKITKKDGAD---------------GQGKAKTR--------PTSTGG 138
L GE + ++M + D G G+A R P + G
Sbjct: 68 GLVLLRGENL-VSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
Query: 139 LLPPPPGSG------MSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPS 189
L P G G M+ + ++ + + P P + +
Sbjct: 127 LAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
Score = 28.1 bits (62), Expect = 4.3
Identities = 9/67 (13%), Positives = 14/67 (20%), Gaps = 1/67 (1%)
Query: 125 GQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAP 184
G+G + + P PP P +P + P
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMG-PPPGMRPPMGPPMG 204
Query: 185 APQPSRA 191
P
Sbjct: 205 IPPGRGT 211
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 29.4 bits (65), Expect = 1.9
Identities = 9/104 (8%), Positives = 28/104 (26%), Gaps = 2/104 (1%)
Query: 120 KDGADGQGKAKTRPTSTGGLLPPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTS 179
D Q ++ G P + + S + ++P + + ++
Sbjct: 24 TDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSLSN 83
Query: 180 AAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNS 223
A + + G +L +++ ++
Sbjct: 84 AVKQTTAAAAATFSEQVGGGS--GGAGRGGAAARVLLVIDEPHT 125
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 26.8 bits (60), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 96 EPKQELDLKFKEGETIKINMKITKKDG 122
+ DL F EGE I +T+KDG
Sbjct: 18 SSVEPGDLTFTEGEEI----LVTQKDG 40
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 27.5 bits (60), Expect = 3.5
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 133 PTSTGGLLPPPPGSGMSKISPPPAPSQNSSP 163
P G P PP G PP P+ SP
Sbjct: 69 PPPAAGGSPSPPADG----GSPPPPADGGSP 95
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 26.6 bits (59), Expect = 4.1
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 96 EPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTR----PTS-TGGLLPPPPGSGMSK 150
+ K ++ K+G+ + + + + + + R P + L P S +
Sbjct: 12 QEKSPREVTMKKGDILTL---LNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSASRENL 68
Query: 151 ISPPPAPSQNS 161
PPP P ++
Sbjct: 69 GGPPPVPPYSA 79
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 28.8 bits (63), Expect = 4.1
Identities = 9/49 (18%), Positives = 12/49 (24%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQPS 189
P G + + P PI + D T P P
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 50
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein,
glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus
thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Length = 314
Score = 28.1 bits (63), Expect = 5.2
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 177 FTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYP 236
+T A A +Q+ T + LV D I + + + P TY
Sbjct: 186 YTVGLGASA----------IQQLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYK 235
Query: 237 GV--AIETVS 244
GV TV+
Sbjct: 236 GVDVTTPTVA 245
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 6.2
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 34/100 (34%)
Query: 292 EEIEKEKEEPKQELDLKFKEGETIKINMKITVSTYTLGLGRQAFIGLGFSDRSDSFDLNV 351
E I K +EE ++ L + ++ +
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREK----------------------------- 115
Query: 352 ALQDHFKWLKKTEE-IEKEKEEPKQELDLKFK---EGETI 387
A +D +W ++ E +EK K + D F + + I
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIA-DKAFYQQPDADII 154
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 25.2 bits (56), Expect = 6.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 96 EPKQELDLKFKEGETIKINMKITKKDGADG 125
++ DL F++G+ I I + K D +
Sbjct: 13 AGEESGDLPFRKGDVITI---LKKSDSQND 39
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 25.8 bits (57), Expect = 8.5
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 96 EPKQELDLKFKEGETIKINMKITKKDGADG 125
E +Q DL F+ G+ I + I+K D
Sbjct: 27 EGQQPGDLNFQAGDRITV---ISKTDSHFD 53
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens}
SCOP: b.1.10.2
Length = 146
Score = 26.9 bits (59), Expect = 8.7
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 141 PPPPGSGMSKISPPPAPSQNSSPIHQVNANANN 173
P + +S P + ++ I + A + N
Sbjct: 5 ISQPHFLLDGLSSQPLFNDIAAGIPSITAYSKN 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,919,898
Number of extensions: 357002
Number of successful extensions: 1253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 41
Length of query: 393
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 297
Effective length of database: 4,021,377
Effective search space: 1194348969
Effective search space used: 1194348969
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.6 bits)