RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1797
(393 letters)
>d1tqza1 b.55.1.11 (A:1-133) Necap1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 133
Score = 186 bits (475), Expect = 3e-59
Identities = 65/101 (64%), Positives = 86/101 (85%)
Query: 190 RAADWNLQEPQWTGRMRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRY 249
RA+DW L +P WTGR+R+ +K K +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRY
Sbjct: 32 RASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRY 91
Query: 250 FVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 290
FV+RI+D +GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 92 FVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132
Score = 158 bits (402), Expect = 2e-48
Identities = 55/86 (63%), Positives = 74/86 (86%)
Query: 1 MRLVTKDKECILKLEDRNSGELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQAFI 60
+R+ +K K +KLED+ SGELFAQ P++ YPG+A+ETV+DSSRYFV+RI+D +GR AFI
Sbjct: 47 LRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFI 106
Query: 61 GLGFSDRSDSFDLNVALQDHFKWLKK 86
G+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 107 GIGFTDRGDAFDFNVSLQDHFKWVKQ 132
Score = 67.4 bits (165), Expect = 2e-14
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 331 GRQAFIGLGFSDRSDSFDLNVALQDHFKWLKK 362
GR AFIG+GF+DR D+FD NV+LQDHFKW+K+
Sbjct: 101 GRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQ 132
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId:
5386]}
Length = 145
Score = 27.6 bits (61), Expect = 1.7
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 33 GVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEE--- 89
G T+ S +LR G + + +G + D+ L+ L +
Sbjct: 42 GAHTLTMGGSGTSGMLRFMSTKGERITVAVGVHNYKRWCDVVTGLKPDETALVINPQYYN 101
Query: 90 ---IEKEKEEPKQELDLKFKEGETIKINMKITKKDG 122
+ +E+ E + G +++ T +G
Sbjct: 102 NGGRDYVREKQLAEYSVTSAIGTKVEVV--YTVAEG 135
Score = 25.6 bits (56), Expect = 6.6
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 237 GVAIETVSDSSRYFVLRIKDDSGRQAFIGLGFSDRSDSFDLNVALQDHFKWLKKTEE--- 293
G T+ S +LR G + + +G + D+ L+ L +
Sbjct: 42 GAHTLTMGGSGTSGMLRFMSTKGERITVAVGVHNYKRWCDVVTGLKPDETALVINPQYYN 101
Query: 294 ---IEKEKEEPKQELDLKFKEGETIKINMKIT 322
+ +E+ E + G +++ +
Sbjct: 102 NGGRDYVREKQLAEYSVTSAIGTKVEVVYTVA 133
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 27.4 bits (60), Expect = 2.1
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 8/102 (7%)
Query: 91 EKEKEEPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPP----PGS 146
+++ P + F + + I K + G+ + G +P P
Sbjct: 35 ALDEDVPVPSSAVSFDAKDFLHI---KEKYNNDWWIGR-LVKEGCEIGFIPSPLRLENIR 90
Query: 147 GMSKISPPPAPSQNSSPIHQVNANANNWGDFTSAAPAPAPQP 188
+ SS + G F + A Q
Sbjct: 91 IQQEQKRKRFHGGKSSGNSSSSLGEMVSGTFRATPTTTAKQK 132
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi
[TaxId: 90370]}
Length = 243
Score = 27.9 bits (61), Expect = 2.2
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 164 IHQVNANANNWGDFTSAAPAPAPQPSRAADWNLQEPQWTGRMRLVTKDKECILKLEDRNS 223
+ N + A PA + + E L + +
Sbjct: 139 VTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLA 198
Query: 224 GELFAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQA-FIGL 266
+ A ++ G T S+S +F R +GR A FI L
Sbjct: 199 RQRLANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWL 242
Score = 27.5 bits (60), Expect = 2.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 23 FAQCPIDTYPGVAIETVSDSSRYFVLRIKDDSGRQA-FIGL 62
A ++ G T S+S +F R +GR A FI L
Sbjct: 202 LANTGVEHVYGGDRCTFSESETFFSYRRDKTTGRMASFIWL 242
>d1rv9a_ d.194.1.2 (A:) Hypothetical protein NMB0706 {Neisseria
meningitidis, serogroup B [TaxId: 487]}
Length = 242
Score = 27.2 bits (59), Expect = 3.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 38 TVSDSSRYFVLRIKDDSGRQA-FIGL 62
TV + +F R +GR A I L
Sbjct: 215 TVLERDTFFSYRRDGATGRMASLIWL 240
Score = 27.2 bits (59), Expect = 3.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 242 TVSDSSRYFVLRIKDDSGRQA-FIGL 266
TV + +F R +GR A I L
Sbjct: 215 TVLERDTFFSYRRDGATGRMASLIWL 240
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 25.7 bits (56), Expect = 4.1
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 91 EKEKEEPKQELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTGGLLPPP 143
+E + P + + F+ + + + K + G+ + G +P P
Sbjct: 33 AQEDDVPVPGMAISFEAKDFLHV---KEKFNNDWWIGR-LVKEGCEIGFIPSP 81
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.0 bits (52), Expect = 9.3
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 99 QELDLKFKEGETIKINMKITKKDGADGQGKAKTRPTSTG 137
E+++ K+G+ + I K K +T+ + G
Sbjct: 19 PEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.387
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,463,663
Number of extensions: 71519
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 16
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)