BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17970
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
           From Yersinia Pestis
 pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
           Effector Protein From Yersinia Pestis
          Length = 454

 Score = 26.9 bits (58), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/86 (22%), Positives = 41/86 (47%)

Query: 86  PTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTVMDPTLSEMTVMD 145
           P+L  + V D  L ++  +  +L+ + V +   S ++ + P L  +      +  +  + 
Sbjct: 257 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLP 316

Query: 146 PTLSEMTVMDPTLSEMTVMDPRLSEM 171
           P+L E+ V +  L E+  + PRL  +
Sbjct: 317 PSLEELNVSNNKLIELPALPPRLERL 342


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.125    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,538,105
Number of Sequences: 62578
Number of extensions: 143210
Number of successful extensions: 455
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 113
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)