BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17970
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8MUX0|KR161_HUMAN Keratin-associated protein 16-1 OS=Homo sapiens GN=KRTAP16-1 PE=3
SV=1
Length = 517
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 55/148 (37%)
Query: 23 VMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDPTLSEMT 82
P+ P + P + + +P+ S + P E T +P+ S P E T
Sbjct: 58 CRQPSCPVSSCAQPLCCDPVICEPSCSVSSGCQPVCCEATTCEPSCSVSNCYQPVCFEAT 117
Query: 83 VMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTVMDPTLSEMT 142
+ +P+ P E V +P+ S + P E I +P+ + P SE T
Sbjct: 118 ICEPSCSVSNCCQPVCFEATVCEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSEAT 177
Query: 143 VMDPTLSEMTVMDPTLSEMTVMDPRLSE 170
P L T P L + + P + E
Sbjct: 178 SCQPVLCVPTSCQPVLCKSSCCQPVVCE 205
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 5/173 (2%)
Query: 3 VMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMT 62
P+ + P + + +P+ + P E +P+ S P E T
Sbjct: 58 CRQPSCPVSSCAQPLCCDPVICEPSCSVSSGCQPVCCEATTCEPSCSVSNCYQPVCFEAT 117
Query: 63 LMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMT 122
+ +P+ S P E TV +P+ + P E A+ +P+ S + P SE T
Sbjct: 118 ICEPSCSVSNCCQPVCFEATVCEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSEAT 177
Query: 123 IMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMD-----PTLSEMTVMDPRLSE 170
P L T P L + + P + E + P+ + V +P +
Sbjct: 178 SCQPVLCVPTSCQPVLCKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCCQ 230
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 5/171 (2%)
Query: 1 MTVMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPE 60
T +P+ S P E T+ +P+ P E V +P+ S + P E
Sbjct: 96 ATTCEPSCSVSNCYQPVCFEATICEPSCSVSNCCQPVCFEATVCEPSCSVSSCAQPVCCE 155
Query: 61 MTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMD----- 115
+ +P+ S + P SE T P L T P L + + P + E +
Sbjct: 156 PAICEPSCSVSSCCQPVGSEATSCQPVLCVPTSCQPVLCKSSCCQPVVCEPSCCSAVCTL 215
Query: 116 PTLSEMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDP 166
P+ + + +P+ + PT S + + + +P+ SE ++ P
Sbjct: 216 PSSCQPVVCEPSCCQPVCPTPTCSVTSSCQAVCCDPSPCEPSCSESSICQP 266
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 15/166 (9%)
Query: 1 MTVMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPE 60
T+ +P+ S P E TV +P+ + P E A+ +P+ S + P E
Sbjct: 116 ATICEPSCSVSNCCQPVCFEATVCEPSCSVSSCAQPVCCEPAICEPSCSVSSCCQPVGSE 175
Query: 61 MTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDP--TLPEMA---VMDPTLSEMTVMD 115
T P L T P L + + P + E + TLP V +P+ +
Sbjct: 176 ATSCQPVLCVPTSCQPVLCKSSCCQPVVCEPSCCSAVCTLPSSCQPVVCEPSCCQPVCPT 235
Query: 116 PTLS-----EMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDP 156
PT S + DP+ +P+ SE ++ P V +P
Sbjct: 236 PTCSVTSSCQAVCCDPSP-----CEPSCSESSICQPATCVALVCEP 276
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 10/174 (5%)
Query: 2 TVMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEM 61
+ P E A+ +P+ S + P E T P L P L + + P + E
Sbjct: 147 SCAQPVCCEPAICEPSCSVSSCCQPVGSEATSCQPVLCVPTSCQPVLCKSSCCQPVVCEP 206
Query: 62 TLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEM 121
+ + + P + E + P P T + + DP+ E P+ SE
Sbjct: 207 SCCSAVCTLPSSCQPVVCEPSCCQPVCPTPTCSVTSSCQAVCCDPSPCE-----PSCSES 261
Query: 122 TIMDPT-----LPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSE 170
+I P + E + P + +P T +P+ ++ P SE
Sbjct: 262 SICQPATCVALVCEPVCLRPVCCVQSSCEPPSVPSTCQEPSCCVSSICQPICSE 315
>sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex protein pan1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pan1 PE=1 SV=1
Length = 1794
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 14/169 (8%)
Query: 12 AVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEM 71
+ P + T M P +P+ T M P + M P + M P +P+ T M P + M
Sbjct: 602 GMQQPMAPQRTGMQPMMPQRTGMQPQMPGM--QQPMAPQRTGMQPMMPQRTGMQPQMPGM 659
Query: 72 --------TVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTI 123
T M P + T M P +P+ T M P +P M P + T M P + + T
Sbjct: 660 QQPMAPQRTGMQPMAPQRTGMQPMMPQRTGMQPQMPGM--QQPMAPQRTGMQPMMPQRTG 717
Query: 124 MDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMT 172
M P +P M P + T M P + T M P ++ ++ R M
Sbjct: 718 MQPQMPGM--QQPMAPQRTGMQPMAPQRTGMQPQMTGGPMLPQRTGGMA 764
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 15/159 (9%)
Query: 22 TVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDPTLSEM 81
P +P+ T M P + + P + M P +P+ T M P ++ P +
Sbjct: 507 GFQQPMVPQRTGMQPMMP--GLQQPMAPQRTGMQPMMPQRTGMQPQMT--GFQQPMAPQR 562
Query: 82 TVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIM-DPTLPEMTVMDPTLSE 140
T M P +P+ T M P +P M P + T M P + + T M P P+ T M P + +
Sbjct: 563 TGMQPMMPQRTGMQPQMPGM--QQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQ 620
Query: 141 MTVMDPTLSEM--------TVMDPTLSEMTVMDPRLSEM 171
T M P + M T M P + + T M P++ M
Sbjct: 621 RTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGM 659
>sp|Q9BXM0|PRAX_HUMAN Periaxin OS=Homo sapiens GN=PRX PE=1 SV=2
Length = 1461
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 83/163 (50%), Gaps = 30/163 (18%)
Query: 6 PTLSEMAVMDPTLSEMTVMDPTLPEMTIMD--------PTLSEMAVMDPTLSEMAVMDPT 57
P + EMAV D L E+ + P +PEM + + P + EMAV D L E V P
Sbjct: 606 PKVPEMAVPDVHLPEVQL--PKVPEMKLPEMKLPEVKLPKVPEMAVPDVHLPE--VQLPK 661
Query: 58 LPEMTLMDPTLSEMTVMD--------PTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLS 109
+PEM L P + EM V + P +SEM + P +PEM V D LPE V P +
Sbjct: 662 VPEMKL--PKMPEMAVPEVRLPEVQLPKVSEMKL--PKVPEMAVPDVHLPE--VQLPKVC 715
Query: 110 EMTVMDPTLSEMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMT 152
EM V D L E+ + P +PEM V D L E+ + P +SE+
Sbjct: 716 EMKVPDMKLPEIKL--PKVPEMAVPDVHLPEVQL--PKVSEIR 754
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 93/177 (52%), Gaps = 27/177 (15%)
Query: 7 TLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDP 66
+SEM + P + EM V + LPE+ + P +SEM + P +SE+AV + LPE+ L P
Sbjct: 524 KVSEMKL--PKVPEMAVPEVRLPEVQL--PKVSEMKL--PEVSEVAVPEVRLPEVQL--P 575
Query: 67 TLSEMTVMD---PTLSEMT--------VMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMD 115
+ EM V + P + EM V P +PEM V D LPE V P + EM + +
Sbjct: 576 KVPEMKVPEMKLPKVPEMKLPEMKLPEVQLPKVPEMAVPDVHLPE--VQLPKVPEMKLPE 633
Query: 116 PTLSEMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMT 172
L E+ + P +PEM V D L E+ + P + EM + P + EM V + RL E+
Sbjct: 634 MKLPEVKL--PKVPEMAVPDVHLPEVQL--PKVPEMKL--PKMPEMAVPEVRLPEVQ 684
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 86/158 (54%), Gaps = 28/158 (17%)
Query: 16 PTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMD 75
P + E + + LPE+ + P +SEM + P + EMAV + LPE+ L
Sbjct: 453 PKVPEAALPEVRLPEVEL--PKVSEMKL--PKVPEMAVPEVRLPEVEL------------ 496
Query: 76 PTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTVMD 135
P +SEM + P +PEM V + LPE+ ++ +SEM + P + EM + + LPE+ +
Sbjct: 497 PKVSEMKL--PKVPEMAVPEVRLPEVQLLK--VSEMKL--PKVPEMAVPEVRLPEVQL-- 548
Query: 136 PTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMTV 173
P +SEM + P +SE+ V + L E+ + P++ EM V
Sbjct: 549 PKVSEMKL--PEVSEVAVPEVRLPEVQL--PKVPEMKV 582
>sp|Q9FZ35|PRP1_ARATH Proline-rich protein 1 OS=Arabidopsis thaliana GN=PRP1 PE=2 SV=1
Length = 335
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 55/145 (37%), Gaps = 28/145 (19%)
Query: 23 VMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMT---------V 73
V PTLP P V PTLS PTLP P ++ T V
Sbjct: 51 VHKPTLPPPVYTPP------VHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTPPV 104
Query: 74 MDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTV 133
PTLS PTL LP V PTLS PTLS T+ PTL
Sbjct: 105 YKPTLSPPVYTKPTL---------LPP--VFKPTLSPPVYTKPTLSP-TVYKPTLSPPVN 152
Query: 134 MDPTLSEMTVMDPTLSEMTVMDPTL 158
P+LS V PTLS PTL
Sbjct: 153 NKPSLSP-PVYKPTLSPPVYTKPTL 176
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 13 VMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMT 72
V PTLS PTLP P ++ + P + V PTL PTL
Sbjct: 65 VHKPTLSPPVYTKPTLPPPAYTPPVYNKPTLPAPVYTP-PVYKPTLSPPVYTKPTLLP-P 122
Query: 73 VMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
V PTLS PTL TV PTL P+LS V PTLS PTLP
Sbjct: 123 VFKPTLSPPVYTKPTL-SPTVYKPTLSPPVNNKPSLSP-PVYKPTLSPPVYTKPTLP 177
>sp|O55103|PRAX_MOUSE Periaxin OS=Mus musculus GN=Prx PE=1 SV=1
Length = 1391
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 82/155 (52%), Gaps = 27/155 (17%)
Query: 6 PTLSEMAVMD--------PTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPT 57
P + EMAV D P +SE+ + P +PEM + D L E+ + P +SE+ + P
Sbjct: 568 PKVPEMAVPDVRLPEVQLPKVSEVKL--PKMPEMAVPDVHLPELQL--PKMSEVKL--PK 621
Query: 58 LPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEM---AVMDPTLSEMTVM 114
+PEM + D L E+ + P +SEM + P +PEMT+ D LPE+ V D L EM +
Sbjct: 622 MPEMAVPDVRLPEVQL--PKVSEMKL--PKMPEMTMPDIRLPEVQLPKVPDIKLPEMKLP 677
Query: 115 D---PTLSEMTIMDPTLPEM---TVMDPTLSEMTV 143
+ P + +M + D LPE+ V D L EM V
Sbjct: 678 EIKLPKVPDMAVPDVPLPELQLPKVSDIRLPEMQV 712
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 44/172 (25%)
Query: 23 VMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDPTLSEMT 82
V PT PE+ + P + E+ + P + E A+ D LPE+ L P +S+M
Sbjct: 435 VKAPTGPEVKL--PKVPEVKL--PKVPEAAIPDVQLPEVQL------------PKMSDMK 478
Query: 83 VMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMD---PTLSEMTIMD--------PTLPEM 131
+ P +PEM V D LPE+ + P + EM V + P EM + D P +PEM
Sbjct: 479 L--PKIPEMVVPDVRLPEVQL--PKVPEMKVPEMKLPKWPEMAVPDVHLPDVQLPKVPEM 534
Query: 132 TVMDPTLSEMTVMD--------PTLSEMTVMD---PTLSEMTVMDPRLSEMT 172
+ P + EM V D P + EM + + P + EM V D RL E+
Sbjct: 535 KL--PKVPEMAVPDVHLPDVQLPKVPEMKLPEMKLPKVPEMAVPDVRLPEVQ 584
>sp|Q63425|PRAX_RAT Periaxin OS=Rattus norvegicus GN=Prx PE=1 SV=2
Length = 1383
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 23/138 (16%)
Query: 6 PTLSEMAVMD--------PTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPT 57
P + EMAV D P +SE+ + P +P+M + D L E+ + P +SE+ + P
Sbjct: 573 PKVPEMAVPDVRIPEVQLPKVSEVKL--PKIPDMAVPDVRLPELQL--PKMSEVKL--PK 626
Query: 58 LPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEM---AVMDPTLSEMTVM 114
+P+M + D L E+ + P +SE+ + P +PEMT+ D LPE+ V D L E+ +
Sbjct: 627 IPDMAVPDVRLPEVQL--PKVSELKL--PKVPEMTMPDIRLPEVQLPKVPDIKLPEIKL- 681
Query: 115 DPTLSEMTIMDPTLPEMT 132
P + EM + D LPE+
Sbjct: 682 -PKVPEMAVPDVPLPELQ 698
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 45/175 (25%)
Query: 23 VMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDPTLSEMT 82
V P PE+ + P + E+ + P E A+ D LPE+ L P +S+M
Sbjct: 435 VKAPKGPEVKL--PKVPEIKL--PKAPEAAIPDVQLPEVQL------------PKMSDMK 478
Query: 83 VMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMD---PTLSEMTIMD--------PTLPEM 131
+ P +PEM V D LPE+ + P + EM V + P + EM + D P +PEM
Sbjct: 479 L--PKIPEMAVPDVHLPEVKL--PKVPEMKVPEMKLPKIPEMAVPDVHLPDIQLPKVPEM 534
Query: 132 TVMD---PTLSEMTVMD--------PTLSEMTVMD---PTLSEMTVMDPRLSEMT 172
+ D P + EM V D P + EM + D P + EM V D R+ E+
Sbjct: 535 KLPDMKLPKVPEMAVPDVHLPDIQLPKVPEMKLPDMKLPKVPEMAVPDVRIPEVQ 589
>sp|P07898|PGCA_CHICK Aggrecan core protein OS=Gallus gallus GN=ACAN PE=1 SV=2
Length = 2109
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 63/152 (41%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+++ T+ E + PE++I T+ E++ E+ + T E
Sbjct: 1519 EISIETSTVHETSGETSAFPEISIETSTVHEISGESSAFPEIRIETSTSQEARGETSAFP 1578
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+T+ T+ E++ PE+++ T+ E++ E+ + T E LP
Sbjct: 1579 EITIEASTIQEISGETSAFPEISIETSTVREISGETSAFPEIRIETSTSQEARGETSALP 1638
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEM 161
E+T+ T+ E + E+++ T E
Sbjct: 1639 EITIETSTVHETSGEASAFPEISIETSTRQEA 1670
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/146 (19%), Positives = 59/146 (40%)
Query: 17 TLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDP 76
T+ E++ PE+ I T E++ E+ + T E E+T+
Sbjct: 1446 TIQEISGETSAFPEIRIETSTFQEISGETSAFPEIRIETSTSQEARGETSAFPEITIEAS 1505
Query: 77 TLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTVMDP 136
T+ E + PE+++ T+ E + E+++ T+ E++ PE+ +
Sbjct: 1506 TVHETSGETSAFPEISIETSTVHETSGETSAFPEISIETSTVHEISGESSAFPEIRIETS 1565
Query: 137 TLSEMTVMDPTLSEMTVMDPTLSEMT 162
T E E+T+ T+ E++
Sbjct: 1566 TSQEARGETSAFPEITIEASTIQEIS 1591
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 63/151 (41%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+ + T+ E + PE++I T+ E + E+++ T+ E++
Sbjct: 1499 EITIEASTVHETSGETSAFPEISIETSTVHETSGETSAFPEISIETSTVHEISGESSAFP 1558
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+ + T E PE+T+ T+ E++ E+++ T+ E++ P
Sbjct: 1559 EIRIETSTSQEARGETSAFPEITIEASTIQEISGETSAFPEISIETSTVREISGETSAFP 1618
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSE 160
E+ + T E L E+T+ T+ E
Sbjct: 1619 EIRIETSTSQEARGETSALPEITIETSTVHE 1649
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 66/164 (40%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+ + T E PE+TI T+ E + E+++ T+ E +
Sbjct: 1479 EIRIETSTSQEARGETSAFPEITIEASTVHETSGETSAFPEISIETSTVHETSGETSAFP 1538
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+++ T+ E++ PE+ + T E E+T+ T+ E++ P
Sbjct: 1539 EISIETSTVHEISGESSAFPEIRIETSTSQEARGETSAFPEITIEASTIQEISGETSAFP 1598
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMTV 173
E+++ T+ E++ E+ + T E L E+T+
Sbjct: 1599 EISIETSTVREISGETSAFPEIRIETSTSQEARGETSALPEITI 1642
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/164 (19%), Positives = 66/164 (40%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+++ T+ E++ PE+ I T E E+ + T+ E++
Sbjct: 1539 EISIETSTVHEISGESSAFPEIRIETSTSQEARGETSAFPEITIEASTIQEISGETSAFP 1598
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+++ T+ E++ PE+ + T E L E+T+ T+ E + P
Sbjct: 1599 EISIETSTVREISGETSAFPEIRIETSTSQEARGETSALPEITIETSTVHETSGEASAFP 1658
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMTV 173
E+++ T E E+++ T E++ E++V
Sbjct: 1659 EISIETSTRQEARSEASAYPEVSIEASTTQEVSGESSAFPEISV 1702
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 62/159 (38%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+ + T+ E++ PE++I T+ E++ E+ + T E L
Sbjct: 1579 EITIEASTIQEISGETSAFPEISIETSTVREISGETSAFPEIRIETSTSQEARGETSALP 1638
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+T+ T+ E + PE+++ T E E+++ T E++ P
Sbjct: 1639 EITIETSTVHETSGEASAFPEISIETSTRQEARSEASAYPEVSIEASTTQEVSGESSAFP 1698
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRL 168
E++V T E E+ + T E + P L
Sbjct: 1699 EISVETSTSQEARGETSAFPEIGIETSTAHEGSGETPGL 1737
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 60/152 (39%)
Query: 10 EMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLS 69
E+ + T E PE+TI T+ E++ E+++ T+ E++
Sbjct: 1559 EIRIETSTSQEARGETSAFPEITIEASTIQEISGETSAFPEISIETSTVREISGETSAFP 1618
Query: 70 EMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLP 129
E+ + T E LPE+T+ T+ E + E+++ T E P
Sbjct: 1619 EIRIETSTSQEARGETSALPEITIETSTVHETSGEASAFPEISIETSTRQEARSEASAYP 1678
Query: 130 EMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEM 161
E+++ T E++ E++V T E
Sbjct: 1679 EVSIEASTTQEVSGESSAFPEISVETSTSQEA 1710
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 67/163 (41%)
Query: 1 MTVMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPE 60
+T+ T+ E + E+++ T+ E + E+++ T+ E++ PE
Sbjct: 1500 ITIEASTVHETSGETSAFPEISIETSTVHETSGETSAFPEISIETSTVHEISGESSAFPE 1559
Query: 61 MTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSE 120
+ + T E E+T+ T+ E++ PE+++ T+ E++ E
Sbjct: 1560 IRIETSTSQEARGETSAFPEITIEASTIQEISGETSAFPEISIETSTVREISGETSAFPE 1619
Query: 121 MTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTV 163
+ I T E L E+T+ T+ E + E+++
Sbjct: 1620 IRIETSTSQEARGETSALPEITIETSTVHETSGEASAFPEISI 1662
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 (Fragment)
OS=Cricetulus griseus GN=POLR2A PE=3 SV=1
Length = 467
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 24 MDPTLPEMTIMDPTLS----EMAVMDPTLSEMA-VMDPTLPEMTLMDPTLS----EMTVM 74
PT P+ + PT S + + PT S + V PT P+ + PT S + +
Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 423
Query: 75 DPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLS 109
PT S PT P+ + PT P + PT S
Sbjct: 424 SPTYS------PTSPKGSTYSPTSPGYSPTSPTYS 452
>sp|Q25434|FP1_MYTCO Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1
Length = 872
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 43/148 (29%), Gaps = 16/148 (10%)
Query: 31 MTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMTVMDPTLSEMTVMDPTL-- 88
T P+ PT PT + P+ T PT PT
Sbjct: 127 KTSYPPSYKHKITYPPTYKPKITYPPTYKQKPSYPPSYKPKTTYPPTYKPKITYPPTYKR 186
Query: 89 -PEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTV---MDPTLSEMTVM 144
P T P A PT PT P P+ T P +S ++
Sbjct: 187 KPSYTPYKP----KATYPPTYKPKITYPPTYKRKPSYTPYKPKTTYPPTYKPKISYPSIY 242
Query: 145 DPTLSEMTVMDPTLSEMTV---MDPRLS 169
P S ++ S+ T P++S
Sbjct: 243 KPKASYVSSYK---SKKTYPPTYKPKIS 267
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 42/163 (25%), Gaps = 12/163 (7%)
Query: 4 MDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTL 63
PT PT + P+ T PT PT P P+ T
Sbjct: 140 YPPTYKPKITYPPTYKQKPSYPPSYKPKTTYPPTYKPKITYPPTYKRKPSYTPYKPKATY 199
Query: 64 MDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTI 123
PT PT P P+ T PT P +S ++ P S ++
Sbjct: 200 -PPTYKPKITYPPTYKRKPSYTPYKPK-TTYPPTY------KPKISYPSIYKPKASYVSS 251
Query: 124 MDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDP 166
PT PT PT P
Sbjct: 252 YK----SKKTYPPTYKPKISYPPTYKPKPSYPPTYKPKVTYPP 290
>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2
Length = 521
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 54 MDPTLPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTV 113
M + E+ L D ++E+ + L +TV+D L + T+ E++ + P L + +
Sbjct: 221 MWQQVEELYLADNNITELLRPEHVLQALTVLD--LSNNQIAQETVLEISHL-PRLERLNL 277
Query: 114 MDPTLSEMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMD 155
+LSE+ D + T + P L E+ + D +SE V++
Sbjct: 278 SSTSLSEIKFSDVPAGKKTTLFPALKELLLDDNNISEWRVVN 319
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 64 MDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTI 123
M + E+ + D ++E+ + L +TV+D L + T+ E++ + P L + +
Sbjct: 221 MWQQVEELYLADNNITELLRPEHVLQALTVLD--LSNNQIAQETVLEISHL-PRLERLNL 277
Query: 124 MDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMD 165
+L E+ D + T + P L E+ + D +SE V++
Sbjct: 278 SSTSLSEIKFSDVPAGKKTTLFPALKELLLDDNNISEWRVVN 319
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 74 MDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTV 133
M + E+ + D + E+ + L + V+D LS + T+ E++ + P L + +
Sbjct: 221 MWQQVEELYLADNNITELLRPEHVLQALTVLD--LSNNQIAQETVLEISHL-PRLERLNL 277
Query: 134 MDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEMTVL 174
+LSE+ D + T + P L E+ + D +SE V+
Sbjct: 278 SSTSLSEIKFSDVPAGKKTTLFPALKELLLDDNNISEWRVV 318
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 1 MTVMDPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPE 60
+TV+D LS + T+ E++ + P L + + +LSE+ D + + P L E
Sbjct: 248 LTVLD--LSNNQIAQETVLEISHL-PRLERLNLSSTSLSEIKFSDVPAGKKTTLFPALKE 304
Query: 61 MTLMDPTLSEMTVMD 75
+ L D +SE V++
Sbjct: 305 LLLDDNNISEWRVVN 319
>sp|P13830|RESA_PLAFF Ring-infected erythrocyte surface antigen OS=Plasmodium falciparum
(isolate FC27 / Papua New Guinea) GN=RESA PE=2 SV=1
Length = 1073
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 72 TVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEM 131
TV D + E T D + E TV D + V +PT+++ V +PT++E + +PT+ E
Sbjct: 443 TVDDEHVEEHTADDEHVEEPTVAD----DEHVEEPTVADEHVEEPTVAEEHVEEPTVAEE 498
Query: 132 TVMDP 136
V +P
Sbjct: 499 HVEEP 503
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 112 TVMDPTLSEMTIMDPTLPEMTVMD------PTLSEMTVMDPTLSEMTVMDPTLSEMTVMD 165
TV D + E T D + E TV D PT+++ V +PT++E V +PT++E V +
Sbjct: 443 TVDDEHVEEHTADDEHVEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEHVEE 502
Query: 166 P 166
P
Sbjct: 503 P 503
Score = 34.3 bits (77), Expect = 0.48, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 62 TLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEM 121
T+ D + E T D + E TV D + V +PT+ + V +PT++E V +PT++E
Sbjct: 443 TVDDEHVEEHTADDEHVEEPTVAD----DEHVEEPTVADEHVEEPTVAEEHVEEPTVAEE 498
Query: 122 TIMDP 126
+ +P
Sbjct: 499 HVEEP 503
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 13 VMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLMDPTLSEMT 72
V D + E T D + E T+ D + V +PT+++ V +PT+ E + +PT++E
Sbjct: 444 VDDEHVEEHTADDEHVEEPTVAD----DEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEH 499
Query: 73 VMDPTLSEMTVMDPTLPEMTVMD 95
V +P S++ P + + D
Sbjct: 500 VEEPA-SDVQQTSEAAPTIEIPD 521
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 3 VMDPTLSE-MAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDP 46
V +PT+++ V +PT+++ V +PT+ E + +PT++E V +P
Sbjct: 459 VEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEHVEEP 503
>sp|P13831|RESA_PLAFN Ring-infected erythrocyte surface antigen (Fragment) OS=Plasmodium
falciparum (isolate NF7 / Ghana) GN=RESA PE=2 SV=1
Length = 760
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 112 TVMDPTLSEMTIMDPTLPEMTVMD------PTLSEMTVMDPTLSEMTVMDPTLSEMTVMD 165
TV D + E T D + E TV D PT+++ V +PT++E V +PT++E V +
Sbjct: 229 TVDDEHVEEHTADDEHVEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEHVEE 288
Query: 166 P 166
P
Sbjct: 289 P 289
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 3 VMDPTLSE-MAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDP 46
V +PT+++ V +PT+++ V +PT+ E + +PT++E V +P
Sbjct: 245 VEEPTVADDEHVEEPTVADEHVEEPTVAEEHVEEPTVAEEHVEEP 289
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 5/172 (2%)
Query: 5 DPTLSEMAVMDPTLSEMTVMDPTLPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMTLM 64
D LS+ + D LS+ + L + LSE + + LS + + L + L
Sbjct: 86 DANLSDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANLSGADLTNANLNQTDLP 145
Query: 65 DPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSE---- 120
+ LS + L+ + + L + + L + + LS + + L++
Sbjct: 146 NVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDLP 205
Query: 121 -MTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSEM 171
+ + L + LSE + + LS + LS+ + D L+ +
Sbjct: 206 NVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSDANLSDANLTNV 257
>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
Length = 5376
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 13/173 (7%)
Query: 1 MTVMDPTLSEMAVMDPTLS-EMTVMDP----TLPEMTIMDPTLSEMAVMDPTLS----EM 51
+T + P + + PT+S E+T + P PE TI+ +E+ + ++ E+
Sbjct: 812 VTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTTLYTEVPTVPTEVTGVHTEV 871
Query: 52 AVMDPTLPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLP-EMTVMDPTLPEMAVMDPTLSE 110
+ P + + +E+T + P + + PT+ E+T + P + + L+E
Sbjct: 872 TNVSPEETSVPTEETISTEVTTVSPEETTLPTEVPTVSTEVTNVSPEETSVPPEETILTE 931
Query: 111 MTVMDPTLSEMTIMDPTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLS-EMT 162
+T + P + I TLP + P E+T + + PT+S EMT
Sbjct: 932 ITTVSPEETVFPIEGTTLPTEVLTVPI--EVTTFPTGETTVPTEVPTVSTEMT 982
>sp|Q23915|KINX_DICDI Probable serine/threonine-protein kinase kinX OS=Dictyostelium
discoideum GN=kinX PE=3 SV=2
Length = 1094
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 46/88 (52%)
Query: 73 VMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMT 132
V +PT E + + + E T ++ ++ E+ V +PT E V + E T ++ ++ ++
Sbjct: 827 VEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEEIKPEEPTKVEESVEDVK 886
Query: 133 VMDPTLSEMTVMDPTLSEMTVMDPTLSE 160
V D + E+ +PT +E +V D + E
Sbjct: 887 VEDVKVEEVKAEEPTKAEESVEDVKVEE 914
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
Query: 72 TVMDPTLSEMTVMDPT-LPEMTVMDPTLPEMAVMDPT-----LSEMTVMDPTLSEMTIMD 125
+V +P + E+ V +PT + E T ++ + E+ V +PT + E+ V +PT E + +
Sbjct: 811 SVQEP-VEEVKVDEPTKVEEPTKVEEPIEEVKVEEPTKVEESIEEVKVEEPTKVEEPVEE 869
Query: 126 PTLPEMTVMDPTLSEMTVMDPTLSEMTVMDPTLSEMTVMDPRLSE 170
E T ++ ++ ++ V D + E+ +PT +E +V D ++ E
Sbjct: 870 IKPEEPTKVEESVEDVKVEDVKVEEVKAEEPTKAEESVEDVKVEE 914
>sp|Q32PW3|TAF2_DANRE Transcription initiation factor TFIID subunit 2 OS=Danio rerio
GN=taf2 PE=2 SV=2
Length = 1191
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 28 LPEMTIMDPTLSEMAVMDPTLSEMAVMDPTLPEMT----LMDPTLSEMTVMDPTLS 79
LPE+ ++ + AV++PT+ + P LPEMT ++ E VMDP LS
Sbjct: 978 LPELGLVLNLKEKKAVLNPTIKSEQI--PGLPEMTPSMTFINTLKEEHVVMDPALS 1031
>sp|E9Q414|APOB_MOUSE Apolipoprotein B-100 OS=Mus musculus GN=Apob PE=1 SV=1
Length = 4505
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 76 PTLSEMTVMDPTLPE--MTVMDPTLPEMAVMDPTLSEMTVMDPTLSEMTIMDPTLPEMTV 133
P S + + + T+PE +TV TLP+ + T+ ++ + ++++ + TLPE T+
Sbjct: 3768 PEGSSVPIFEATIPEIHLTVSQFTLPKSLPVGNTVFDLNKLANMIADVDLPSVTLPEQTI 3827
Query: 134 MDPTL 138
+ P L
Sbjct: 3828 VIPPL 3832
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 58 LPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMDPT 117
LPEM L D + + + TL + V + T+PE T+ + L ++ V D + E + P
Sbjct: 2682 LPEMYLRDLDVVNIPLARLTLPDFHVPEITIPEFTIPNVNLKDLHVPDLHIPEFQL--PH 2739
Query: 118 LSEMTIMDPTLPEMTVMDPTLSEMTVMD 145
LS TI P ++ + S + ++D
Sbjct: 2740 LSH-TIEIPAFGKLHSILKIQSPLFILD 2766
>sp|P28679|OPS2_DROPS Opsin Rh2 OS=Drosophila pseudoobscura pseudoobscura GN=Rh2 PE=1
SV=3
Length = 381
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 11 MAVMDPTL-----SEMTVMDPTLPEMT-IMDPTLSEMAVMDPTLSEM 51
MA++ P +V+D LP+M +++P S A MDPT+S++
Sbjct: 13 MALLGPRFEAQTGGNRSVLDNVLPDMAPLVNPYWSRFAPMDPTMSKI 59
>sp|Q6BRR2|SEC31_DEBHA Protein transport protein SEC31 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SEC31 PE=3 SV=2
Length = 1265
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 16/87 (18%)
Query: 56 PTLPEMTLMDPTLSEMTVMDPTLSEMTVMDPTLPEMTVMDPTLPEMAVMDPTLSEMTVMD 115
P+ P + PT++ + P +P P M P+LP+ P
Sbjct: 1005 PSTPGVNEAPPTVTSAPIPPPK-------NPYAPAMQAASPSLPKNPYAPP--------- 1048
Query: 116 PTLSEMTIMDPTLPEMTVMDPTLSEMT 142
P+ + I+ PT+P + P+L T
Sbjct: 1049 PSYGQPGILQPTIPTPNIASPSLGRAT 1075
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,227,083
Number of Sequences: 539616
Number of extensions: 1951957
Number of successful extensions: 6400
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 5370
Number of HSP's gapped (non-prelim): 561
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)