Query psy17970
Match_columns 174
No_of_seqs 4 out of 6
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 19:02:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17970.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17970hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ba0g2 d.101.1.1 (G:179-257) 7.8 55 0.004 19.8 0.7 15 3-17 19-33 (79)
2 d1jjcb5 d.104.1.1 (B:475-681) 5.9 1.3E+02 0.0094 20.7 2.0 17 30-46 56-72 (207)
3 d2je6a2 d.101.1.1 (A:192-275) 5.1 49 0.0035 19.8 -0.7 14 3-16 19-32 (84)
4 d2nn6c2 d.101.1.1 (C:188-276) 4.3 95 0.0069 18.8 0.2 23 3-27 20-42 (89)
5 d1ryqa_ g.41.9.3 (A:) putative 3.9 99 0.0072 19.5 0.1 10 42-51 41-50 (67)
6 d2nn6e2 d.101.1.1 (E:192-285) 3.6 93 0.0067 19.2 -0.3 14 3-16 20-33 (94)
7 d2nn6a2 d.101.1.1 (A:185-302) 2.2 1.4E+02 0.01 19.2 -0.7 14 3-16 22-35 (118)
8 d2cpia1 d.58.7.1 (A:101-189) E 2.0 5.1E+02 0.037 14.9 1.9 21 40-60 2-22 (89)
9 d2nqca1 b.1.18.10 (A:2482-2578 1.9 3.7E+02 0.027 16.0 1.1 10 160-169 88-97 (97)
10 d1g60a_ c.66.1.11 (A:) Methylt 1.9 3.7E+02 0.027 17.2 1.2 12 87-98 210-221 (256)
No 1
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.79 E-value=55 Score=19.75 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=11.0
Q ss_pred ccCcccccceecccc
Q psy17970 3 VMDPTLSEMAVMDPT 17 (174)
Q Consensus 3 V~~P~~S~~~V~~P~ 17 (174)
++||+.-||++.|-.
T Consensus 19 lvDpt~eEE~~~~~~ 33 (79)
T d2ba0g2 19 LVDPSREEMSVGDTT 33 (79)
T ss_dssp EESCCTTGGGGCSCE
T ss_pred EECCCHHHHhcCCce
Confidence 568888888877753
No 2
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}
Probab=5.94 E-value=1.3e+02 Score=20.66 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=8.1
Q ss_pred ceeeeCccccceeeecc
Q psy17970 30 EMTIMDPTLSEMAVMDP 46 (174)
Q Consensus 30 ~~~i~~P~~S~~~V~~P 46 (174)
.++|+||..++..+|=+
T Consensus 56 ~i~l~NPis~e~~~lR~ 72 (207)
T d1jjcb5 56 RLLLLNPLAPEKAALRT 72 (207)
T ss_dssp SCEESSCSSGGGSEECS
T ss_pred cEEEeCCcchhhhhhhh
Confidence 34555555555444433
No 3
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=5.09 E-value=49 Score=19.83 Aligned_cols=14 Identities=50% Similarity=0.878 Sum_probs=8.4
Q ss_pred ccCcccccceeccc
Q psy17970 3 VMDPTLSEMAVMDP 16 (174)
Q Consensus 3 V~~P~~S~~~V~~P 16 (174)
++||+..||++.|.
T Consensus 19 lvDpt~~EE~~~~~ 32 (84)
T d2je6a2 19 VVDPDLDEESIMDA 32 (84)
T ss_dssp EESCCHHHHHHCSE
T ss_pred EecCCHHHHHhcCC
Confidence 45666666666654
No 4
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=95 Score=18.80 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=15.2
Q ss_pred ccCcccccceecccccceeEeecCC
Q psy17970 3 VMDPTLSEMAVMDPTLSEMTVMDPT 27 (174)
Q Consensus 3 V~~P~~S~~~V~~P~~S~~~V~~P~ 27 (174)
++||+.-||++.+..+.- ++|..
T Consensus 20 lvDpt~~EE~~~~~~lti--~~~~~ 42 (89)
T d2nn6c2 20 IVDPTGEEEHLATGTLTI--VMDEE 42 (89)
T ss_dssp EESCCTTTTTSCSEEEEE--EECTT
T ss_pred EEcCCHHHHhcCCceEEE--EEcCC
Confidence 458888888888775543 34543
No 5
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.88 E-value=99 Score=19.51 Aligned_cols=10 Identities=30% Similarity=0.401 Sum_probs=4.5
Q ss_pred eeecccccee
Q psy17970 42 AVMDPTLSEM 51 (174)
Q Consensus 42 ~V~~P~~S~~ 51 (174)
.+|||.-|++
T Consensus 41 ~i~dP~~S~i 50 (67)
T d1ryqa_ 41 IIVDVENSEI 50 (67)
T ss_dssp EESCGGGCHH
T ss_pred EEECchHHHH
Confidence 3444444444
No 6
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.63 E-value=93 Score=19.17 Aligned_cols=14 Identities=43% Similarity=0.373 Sum_probs=10.5
Q ss_pred ccCcccccceeccc
Q psy17970 3 VMDPTLSEMAVMDP 16 (174)
Q Consensus 3 V~~P~~S~~~V~~P 16 (174)
++||+.-||++.|-
T Consensus 20 lvDpt~~EE~~~~~ 33 (94)
T d2nn6e2 20 VVDATLQEEACSLA 33 (94)
T ss_dssp ESSCCHHHHTSCSE
T ss_pred EECCCHHHHhccCc
Confidence 57888888887774
No 7
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.16 E-value=1.4e+02 Score=19.18 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=9.3
Q ss_pred ccCcccccceeccc
Q psy17970 3 VMDPTLSEMAVMDP 16 (174)
Q Consensus 3 V~~P~~S~~~V~~P 16 (174)
++||+.-||++.|-
T Consensus 22 lvDPt~~EE~~~~~ 35 (118)
T d2nn6a2 22 LVDPNEREERVMDG 35 (118)
T ss_dssp EESCCHHHHHHCSC
T ss_pred EECCCHHHHhCCCC
Confidence 56777777776663
No 8
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.00 E-value=5.1e+02 Score=14.88 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=10.9
Q ss_pred ceeeeccccceeeeecCCCCc
Q psy17970 40 EMAVMDPTLSEMAVMDPTLPE 60 (174)
Q Consensus 40 ~~~V~~P~~S~~~V~~P~~~~ 60 (174)
+|||+...+=|+.=|++.+.+
T Consensus 2 ~~Rviq~n~vyV~nLp~~~t~ 22 (89)
T d2cpia1 2 SVRVVQKNLVFVVGLSQRLAD 22 (89)
T ss_dssp CCCCCCSSCEEEEEECTTTCC
T ss_pred ceeEEecCEEEEECCCCccCH
Confidence 455555555555555555443
No 9
>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.93 E-value=3.7e+02 Score=16.00 Aligned_cols=10 Identities=50% Similarity=0.733 Sum_probs=0.0
Q ss_pred ceeeeccccc
Q psy17970 160 EMTVMDPRLS 169 (174)
Q Consensus 160 ~~~VlnP~~S 169 (174)
.++|.||++|
T Consensus 88 ~v~V~~p~~~ 97 (97)
T d2nqca1 88 KAKVTGPRLS 97 (97)
T ss_dssp EEEEESCCCC
T ss_pred EEEEeCCccC
No 10
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}
Probab=1.92 E-value=3.7e+02 Score=17.22 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCCceeeeCCCC
Q psy17970 87 TLPEMTVMDPTL 98 (174)
Q Consensus 87 tt~~~~VlnP~~ 98 (174)
+-+...|||||.
T Consensus 210 s~~gd~VlDpF~ 221 (256)
T d1g60a_ 210 SNPNDLVLDCFM 221 (256)
T ss_dssp CCTTCEEEESSC
T ss_pred CCCCCEEEECCC
Done!