RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17970
(174 letters)
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 27.6 bits (62), Expect = 2.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 91 MTVMDPT-LPEMAVMDPTLSEMTVMDPTLSEMTIMD 125
T+ P LPE+ + D L + +S + ++
Sbjct: 139 TTMRGPEILPEVVIYDAEL--TLGLPVAISMTSGLN 172
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC,
hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Length = 89
Score = 26.0 bits (58), Expect = 2.6
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 35 DPTLSEMAVMDP-TLSEMA 52
D TL EMA P T SEM
Sbjct: 40 DATLIEMAEQMPITASEML 58
Score = 25.7 bits (57), Expect = 3.8
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 5 DPTLSEMAVMDP-TLSEM 21
D TL EMA P T SEM
Sbjct: 40 DATLIEMAEQMPITASEM 57
Score = 24.9 bits (55), Expect = 6.6
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 45 DPTLSEMAVMDP-TLPEM 61
D TL EMA P T EM
Sbjct: 40 DATLIEMAEQMPITASEM 57
Score = 24.9 bits (55), Expect = 7.0
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 95 DPTLPEMAVMDP-TLSEM 111
D TL EMA P T SEM
Sbjct: 40 DATLIEMAEQMPITASEM 57
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer,
structural genomics,struct proteomics in europe, spine;
2.70A {Klebsiella pneumoniae}
Length = 387
Score = 27.6 bits (62), Expect = 2.6
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 91 MTVMDPTL-PEMAVMDPTLSEMTVMDPTLSEMTIMD 125
++ P +++ DP L M L+ T MD
Sbjct: 165 FVIVSWRNLPSVSINDPLL--MIGKPAALTAATGMD 198
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 27.1 bits (61), Expect = 2.8
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 91 MTVMDPTL-PEMAVMDPTLSEMTVMDPTLSEMTIMD 125
M ++D + P ++V DP L M M L+ T MD
Sbjct: 161 MAIVDRHVTPMVSVNDPLL--MVGMPKGLTAATGMD 194
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase
nucleotide-binding; HET: DNA; 1.10A {Deinococcus
radiodurans}
Length = 77
Score = 25.9 bits (58), Expect = 2.9
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 35 DPTLSEMAVMDP-TLSEMA 52
+ TL +A P TL+E+A
Sbjct: 32 NATLEALAARQPRTLAELA 50
Score = 25.2 bits (56), Expect = 4.5
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 5 DPTLSEMAVMDP-TLSEM 21
+ TL +A P TL+E+
Sbjct: 32 NATLEALAARQPRTLAEL 49
Score = 24.4 bits (54), Expect = 7.6
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 45 DPTLSEMAVMDP-TLPEM 61
+ TL +A P TL E+
Sbjct: 32 NATLEALAARQPRTLAEL 49
Score = 24.4 bits (54), Expect = 8.2
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 95 DPTLPEMAVMDP-TLSEM 111
+ TL +A P TL+E+
Sbjct: 32 NATLEALAARQPRTLAEL 49
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol
dehydrogenase, structur genomics, joint center for
structural genomics; HET: MSE; 2.07A {Corynebacterium
glutamicum}
Length = 364
Score = 27.2 bits (61), Expect = 3.0
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 79 SEMT---VMDPTLPEMTVMDPT-LPEMAVMDPTLSEMTVMDPTLSEMTIMD 125
SE T + + T +D LPE + D L + +S + ++
Sbjct: 125 SEATNVWGLTEAARKTTGVDLKVLPETVIYDSEL--TMSLPVEMSVASGLN 173
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 26.8 bits (60), Expect = 3.9
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 91 MTVMDPTL-PEMAVMDPTLSEMTVMDPTLSEMTIMD 125
+DP P++A +D + M M P L T +D
Sbjct: 163 FVCVDPHDIPQVAFIDADM--MDGMPPALKAATGVD 196
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative
alcohol dehedrogenase, structural GENO joint center for
structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A
{Ralstonia eutropha}
Length = 358
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 91 MTVMDPT-LPEMAVMDPTLSEMTVMDPTLSEMTIMD 125
T DP LP + DP L + LS + ++
Sbjct: 141 RTGRDPRVLPRTVIYDPAL--TVGLPRGLSVTSALN 174
>2dgz_A Werner syndrome protein variant; HRDC domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: a.60.8.1
Length = 113
Score = 24.7 bits (54), Expect = 9.9
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 35 DPTLSEMAVMDP-TLSEMA 52
+ L +MA M P T+ +
Sbjct: 49 NKILVDMAKMRPTTVENVK 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.125 0.341
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,695,724
Number of extensions: 155961
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 24
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.6 bits)