RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17970
         (174 letters)



>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 426

 Score = 25.1 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 67  TLSEMTVMDPTLSEMTVMDPTLP 89
           TL E+ ++D    E+ V D T P
Sbjct: 400 TLKELGLVDG--QELAVADVTTP 420



 Score = 24.7 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)

Query: 7   TLSEMAVMDPTLSEMTVMDPTLP 29
           TL E+ ++D    E+ V D T P
Sbjct: 400 TLKELGLVDG--QELAVADVTTP 420


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.125    0.341 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,299
Number of extensions: 26492
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 5
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.5 bits)