Query psy17974
Match_columns 583
No_of_seqs 289 out of 2213
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:08:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12775 AAA_7: P-loop contain 100.0 1.9E-51 4.2E-56 418.5 11.3 199 374-574 1-199 (272)
2 COG5245 DYN1 Dynein, heavy cha 100.0 2E-41 4.4E-46 379.6 22.0 258 304-572 1393-1662(3164)
3 KOG3595|consensus 100.0 8.6E-39 1.9E-43 386.1 22.3 254 303-573 38-291 (1395)
4 PF12774 AAA_6: Hydrolytic ATP 100.0 3E-36 6.5E-41 299.1 11.1 105 137-241 127-231 (231)
5 PF08393 DHC_N2: Dynein heavy 99.9 6.7E-23 1.5E-27 221.5 5.2 101 1-101 264-396 (408)
6 COG5271 MDN1 AAA ATPase contai 99.7 3.4E-16 7.3E-21 179.1 23.8 348 137-569 1333-1704(4600)
7 COG5271 MDN1 AAA ATPase contai 99.7 7.4E-15 1.6E-19 168.4 22.3 346 137-566 675-1045(4600)
8 PF07728 AAA_5: AAA domain (dy 99.6 3.8E-15 8.2E-20 136.7 7.1 130 408-547 1-139 (139)
9 TIGR02640 gas_vesic_GvpN gas v 99.5 4.4E-14 9.6E-19 143.9 13.9 173 386-568 1-198 (262)
10 TIGR01650 PD_CobS cobaltochela 99.5 5.9E-14 1.3E-18 145.1 12.6 171 385-568 46-233 (327)
11 COG1222 RPT1 ATP-dependent 26S 99.4 5.7E-13 1.2E-17 136.4 10.9 148 400-572 179-339 (406)
12 PHA02244 ATPase-like protein 99.4 4.9E-12 1.1E-16 132.3 12.8 147 395-560 108-266 (383)
13 COG0714 MoxR-like ATPases [Gen 99.3 2.5E-11 5.4E-16 127.7 15.3 168 386-566 26-200 (329)
14 KOG0733|consensus 99.3 1.8E-11 3.9E-16 132.1 13.1 146 403-570 542-694 (802)
15 PRK11331 5-methylcytosine-spec 99.2 3E-11 6.4E-16 129.6 11.5 148 402-554 190-357 (459)
16 KOG0734|consensus 99.2 1.4E-11 2.9E-16 131.2 7.6 146 407-574 338-490 (752)
17 KOG1808|consensus 99.2 1E-10 2.2E-15 141.0 14.8 170 384-566 417-597 (1856)
18 PF05496 RuvB_N: Holliday junc 99.2 2.7E-10 5.9E-15 111.4 13.9 131 408-567 52-191 (233)
19 COG2256 MGS1 ATPase related to 99.2 1.8E-10 3.9E-15 119.9 13.0 135 398-568 38-176 (436)
20 KOG0733|consensus 99.1 9.8E-11 2.1E-15 126.5 9.3 152 403-571 220-377 (802)
21 KOG0730|consensus 99.1 1.3E-10 2.9E-15 127.1 10.4 152 399-572 461-619 (693)
22 KOG0731|consensus 99.1 1.9E-10 4.2E-15 129.2 11.2 148 403-572 341-499 (774)
23 TIGR03689 pup_AAA proteasome A 99.1 2.4E-10 5.3E-15 125.5 10.5 150 404-572 214-382 (512)
24 TIGR03345 VI_ClpV1 type VI sec 99.1 2.6E-10 5.5E-15 133.4 11.3 152 398-569 199-364 (852)
25 PF07726 AAA_3: ATPase family 99.1 2E-10 4.2E-15 102.9 7.7 125 408-548 1-130 (131)
26 CHL00195 ycf46 Ycf46; Provisio 99.1 4.8E-10 1E-14 123.1 12.4 139 405-571 258-408 (489)
27 KOG0738|consensus 99.1 2.2E-10 4.8E-15 118.3 9.0 145 403-571 242-398 (491)
28 COG1223 Predicted ATPase (AAA+ 99.1 1.3E-09 2.7E-14 107.5 13.7 161 386-571 123-300 (368)
29 PLN00020 ribulose bisphosphate 99.1 2.6E-10 5.7E-15 118.7 9.3 148 404-570 146-313 (413)
30 PTZ00454 26S protease regulato 99.1 3.7E-10 7.9E-15 121.4 10.6 143 404-571 177-332 (398)
31 TIGR00763 lon ATP-dependent pr 99.1 3.9E-10 8.4E-15 131.4 10.9 150 406-569 347-506 (775)
32 TIGR02639 ClpA ATP-dependent C 99.1 3.2E-10 6.9E-15 131.3 10.1 156 398-571 194-361 (731)
33 PF12774 AAA_6: Hydrolytic ATP 99.1 1.6E-09 3.6E-14 108.0 13.7 163 385-564 11-176 (231)
34 KOG0736|consensus 99.1 4.7E-10 1E-14 124.1 10.6 159 396-574 695-863 (953)
35 KOG0737|consensus 99.1 1.6E-10 3.5E-15 119.1 6.4 150 400-570 121-276 (386)
36 KOG0727|consensus 99.1 2.7E-10 5.9E-15 111.5 7.3 145 403-572 186-343 (408)
37 PF01078 Mg_chelatase: Magnesi 99.0 1.6E-09 3.5E-14 105.2 11.7 127 395-533 11-160 (206)
38 PRK03992 proteasome-activating 99.0 1.3E-09 2.7E-14 117.4 12.0 144 405-571 164-318 (389)
39 PF00004 AAA: ATPase family as 99.0 7.2E-10 1.6E-14 99.7 8.2 125 409-553 1-131 (132)
40 PRK10865 protein disaggregatio 99.0 1E-09 2.2E-14 128.7 10.6 154 397-570 189-356 (857)
41 PLN03025 replication factor C 99.0 4.2E-09 9.1E-14 110.4 14.2 169 365-570 1-173 (319)
42 PRK00080 ruvB Holliday junctio 99.0 5.5E-09 1.2E-13 110.0 14.7 137 407-570 52-195 (328)
43 KOG0726|consensus 99.0 8.7E-10 1.9E-14 110.0 7.8 150 397-571 210-372 (440)
44 PRK11034 clpA ATP-dependent Cl 99.0 7.7E-10 1.7E-14 127.3 8.5 152 405-574 206-368 (758)
45 KOG2028|consensus 99.0 5.7E-09 1.2E-13 107.1 13.0 149 392-571 146-297 (554)
46 COG0464 SpoVK ATPases of the A 99.0 2.6E-09 5.7E-14 118.6 11.6 147 403-570 273-425 (494)
47 PRK00411 cdc6 cell division co 99.0 1.5E-08 3.3E-13 109.0 16.8 166 393-572 40-224 (394)
48 PTZ00361 26 proteosome regulat 99.0 2.7E-09 5.8E-14 115.7 10.5 141 405-571 216-370 (438)
49 PRK13342 recombination factor 99.0 7.7E-09 1.7E-13 112.3 14.1 146 391-570 19-166 (413)
50 TIGR01241 FtsH_fam ATP-depende 98.9 3.2E-09 7E-14 117.8 10.6 144 406-571 88-241 (495)
51 KOG0652|consensus 98.9 2.5E-09 5.5E-14 105.2 8.4 159 385-571 187-358 (424)
52 CHL00176 ftsH cell division pr 98.9 7E-09 1.5E-13 117.5 12.8 143 406-570 216-368 (638)
53 PRK10733 hflB ATP-dependent me 98.9 7.7E-09 1.7E-13 118.0 13.3 140 405-571 184-338 (644)
54 CHL00181 cbbX CbbX; Provisiona 98.9 2.8E-09 6E-14 110.0 8.7 144 406-571 59-212 (287)
55 PRK04195 replication factor C 98.9 1.9E-08 4.2E-13 111.3 16.0 170 366-570 3-175 (482)
56 TIGR01242 26Sp45 26S proteasom 98.9 5E-09 1.1E-13 111.9 10.9 144 406-571 156-309 (364)
57 TIGR03346 chaperone_ClpB ATP-d 98.9 3E-09 6.5E-14 125.1 9.7 147 405-571 193-352 (852)
58 CHL00206 ycf2 Ycf2; Provisiona 98.9 3.3E-09 7.2E-14 127.5 10.0 153 399-567 1623-1816(2281)
59 TIGR02881 spore_V_K stage V sp 98.9 4E-09 8.6E-14 107.5 9.3 145 406-571 42-194 (261)
60 TIGR00635 ruvB Holliday juncti 98.9 1.2E-08 2.5E-13 106.2 13.0 137 407-570 31-174 (305)
61 PRK08084 DNA replication initi 98.9 9.4E-09 2E-13 103.1 11.8 154 384-569 22-181 (235)
62 cd00009 AAA The AAA+ (ATPases 98.9 2E-08 4.3E-13 90.7 12.7 129 405-553 18-150 (151)
63 PHA02544 44 clamp loader, smal 98.9 1.6E-08 3.5E-13 105.7 13.5 140 399-570 33-175 (316)
64 TIGR02880 cbbX_cfxQ probable R 98.9 3.5E-09 7.6E-14 109.2 8.0 145 406-571 58-211 (284)
65 PRK09862 putative ATP-dependen 98.8 1.6E-08 3.4E-13 111.3 11.8 153 399-560 203-393 (506)
66 PRK13341 recombination factor 98.8 1.8E-08 3.8E-13 115.7 12.5 179 352-570 3-183 (725)
67 CHL00095 clpC Clp protease ATP 98.8 5.5E-09 1.2E-13 122.5 8.2 145 405-570 199-356 (821)
68 TIGR01243 CDC48 AAA family ATP 98.8 9.3E-09 2E-13 119.4 9.9 146 404-571 485-638 (733)
69 KOG0739|consensus 98.8 6.6E-09 1.4E-13 104.2 7.3 139 407-569 167-313 (439)
70 PRK10787 DNA-binding ATP-depen 98.8 2.2E-08 4.8E-13 116.1 12.6 154 405-569 348-507 (784)
71 PRK14962 DNA polymerase III su 98.8 6.5E-08 1.4E-12 106.2 14.4 142 399-569 26-190 (472)
72 KOG0735|consensus 98.8 3.2E-08 6.9E-13 109.0 11.7 150 403-574 698-854 (952)
73 TIGR02928 orc1/cdc6 family rep 98.8 1.2E-07 2.6E-12 101.0 16.0 165 393-570 25-214 (365)
74 PRK14956 DNA polymerase III su 98.8 7E-08 1.5E-12 105.0 14.2 143 399-570 30-195 (484)
75 PF07724 AAA_2: AAA domain (Cd 98.8 1.1E-08 2.5E-13 97.4 6.8 123 407-533 4-131 (171)
76 PRK13531 regulatory ATPase Rav 98.8 1.1E-07 2.4E-12 103.3 14.8 156 398-566 31-192 (498)
77 COG2255 RuvB Holliday junction 98.7 6.3E-08 1.4E-12 97.0 11.4 133 408-568 54-194 (332)
78 KOG0740|consensus 98.7 1.4E-08 2.9E-13 108.3 7.0 142 407-571 187-336 (428)
79 PRK11034 clpA ATP-dependent Cl 98.7 2.4E-08 5.1E-13 115.1 9.3 152 408-570 490-668 (758)
80 PRK12402 replication factor C 98.7 1.7E-07 3.6E-12 98.6 14.9 148 399-570 27-199 (337)
81 PRK13407 bchI magnesium chelat 98.7 9.3E-08 2E-12 100.4 12.5 84 475-567 129-215 (334)
82 COG0465 HflB ATP-dependent Zn 98.7 2.5E-08 5.5E-13 110.4 8.5 146 405-572 182-337 (596)
83 KOG0729|consensus 98.7 4.2E-08 9.1E-13 97.0 8.9 148 397-569 202-362 (435)
84 PRK00440 rfc replication facto 98.7 2.3E-07 4.9E-12 96.7 15.0 143 399-570 29-176 (319)
85 PF00158 Sigma54_activat: Sigm 98.7 1.7E-07 3.7E-12 89.1 12.5 148 392-552 8-167 (168)
86 PRK06893 DNA replication initi 98.7 1.2E-07 2.7E-12 94.6 11.9 140 400-569 32-175 (229)
87 PRK12422 chromosomal replicati 98.7 7.4E-08 1.6E-12 105.2 11.0 171 376-570 104-286 (445)
88 PRK08727 hypothetical protein; 98.7 2.6E-07 5.6E-12 92.6 13.9 132 407-569 42-176 (233)
89 TIGR00368 Mg chelatase-related 98.7 1.1E-07 2.4E-12 105.0 12.2 156 397-560 202-396 (499)
90 PF00308 Bac_DnaA: Bacterial d 98.7 5.1E-08 1.1E-12 96.7 8.6 162 385-572 9-183 (219)
91 PRK14960 DNA polymerase III su 98.7 1.5E-07 3.3E-12 105.3 12.6 144 398-570 26-192 (702)
92 PRK14961 DNA polymerase III su 98.7 3.9E-07 8.5E-12 97.3 15.2 143 399-570 28-193 (363)
93 KOG0728|consensus 98.7 1.3E-07 2.7E-12 93.0 10.2 141 403-568 178-331 (404)
94 PRK07003 DNA polymerase III su 98.7 3.1E-07 6.7E-12 103.9 14.8 143 399-570 28-193 (830)
95 TIGR02902 spore_lonB ATP-depen 98.6 2E-07 4.2E-12 104.3 12.9 156 405-570 85-278 (531)
96 PRK14949 DNA polymerase III su 98.6 4E-07 8.7E-12 104.7 15.4 143 399-570 28-193 (944)
97 TIGR01243 CDC48 AAA family ATP 98.6 2.3E-07 5E-12 107.8 13.7 141 404-571 210-362 (733)
98 KOG0743|consensus 98.6 2.6E-07 5.7E-12 98.1 12.6 136 406-570 235-385 (457)
99 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.2E-07 4.7E-12 92.1 11.0 135 404-569 36-173 (226)
100 PRK06645 DNA polymerase III su 98.6 6.2E-07 1.3E-11 99.1 14.9 135 407-570 44-202 (507)
101 PTZ00112 origin recognition co 98.6 3.9E-07 8.4E-12 103.7 13.1 163 392-570 764-951 (1164)
102 PRK12323 DNA polymerase III su 98.6 3.4E-07 7.3E-12 102.3 12.5 142 399-569 28-197 (700)
103 COG0466 Lon ATP-dependent Lon 98.6 1.8E-07 3.8E-12 103.9 10.1 145 408-569 352-509 (782)
104 PRK00149 dnaA chromosomal repl 98.6 1.4E-07 3.1E-12 103.6 9.4 170 377-570 116-295 (450)
105 TIGR02639 ClpA ATP-dependent C 98.6 1.3E-07 2.8E-12 109.8 9.5 152 408-570 486-664 (731)
106 PRK14958 DNA polymerase III su 98.6 2.7E-07 5.8E-12 102.5 11.4 143 399-570 28-193 (509)
107 COG0606 Predicted ATPase with 98.6 1.1E-07 2.4E-12 101.7 7.8 152 395-559 187-383 (490)
108 smart00350 MCM minichromosome 98.6 1.5E-07 3.2E-12 104.9 9.1 154 407-572 237-404 (509)
109 TIGR00362 DnaA chromosomal rep 98.6 2.4E-07 5.1E-12 100.4 10.1 170 377-570 104-283 (405)
110 PRK14957 DNA polymerase III su 98.6 9.5E-07 2.1E-11 98.3 14.9 143 399-570 28-193 (546)
111 PRK14964 DNA polymerase III su 98.6 8.7E-07 1.9E-11 97.4 14.4 143 399-570 25-190 (491)
112 KOG0742|consensus 98.5 6.8E-07 1.5E-11 93.3 12.4 172 379-574 351-534 (630)
113 TIGR03345 VI_ClpV1 type VI sec 98.5 2.1E-07 4.5E-12 109.2 9.3 155 409-571 599-783 (852)
114 PF05673 DUF815: Protein of un 98.5 1.4E-06 3.1E-11 86.6 13.5 142 400-570 44-209 (249)
115 PRK10865 protein disaggregatio 98.5 8.7E-07 1.9E-11 104.3 13.9 157 408-572 600-783 (857)
116 PRK05342 clpX ATP-dependent pr 98.5 5.9E-07 1.3E-11 97.1 11.5 152 406-565 108-322 (412)
117 COG0542 clpA ATP-binding subun 98.5 2.8E-07 6E-12 104.8 9.2 158 397-572 181-350 (786)
118 TIGR00678 holB DNA polymerase 98.5 2.2E-06 4.8E-11 82.7 14.3 132 407-567 15-167 (188)
119 PRK14086 dnaA chromosomal repl 98.5 5.3E-07 1.1E-11 100.7 11.2 141 407-570 315-461 (617)
120 TIGR02397 dnaX_nterm DNA polym 98.5 1.4E-06 3.1E-11 92.3 13.8 143 399-570 26-191 (355)
121 COG0542 clpA ATP-binding subun 98.5 4.2E-07 9.2E-12 103.4 10.0 156 408-571 523-708 (786)
122 PRK14088 dnaA chromosomal repl 98.5 2.1E-07 4.6E-12 101.7 7.3 168 376-570 98-278 (440)
123 PRK07994 DNA polymerase III su 98.5 2E-06 4.4E-11 97.2 15.3 142 399-569 28-192 (647)
124 TIGR03346 chaperone_ClpB ATP-d 98.5 1E-06 2.3E-11 103.9 13.3 154 408-569 597-777 (852)
125 PRK06620 hypothetical protein; 98.5 9.3E-07 2E-11 87.4 10.8 114 407-569 45-161 (214)
126 PRK08691 DNA polymerase III su 98.5 1.9E-06 4.2E-11 97.2 14.3 143 399-570 28-193 (709)
127 CHL00095 clpC Clp protease ATP 98.5 9.4E-07 2E-11 103.9 12.4 155 409-571 542-735 (821)
128 PRK14087 dnaA chromosomal repl 98.5 6.8E-07 1.5E-11 98.0 10.4 138 407-570 142-290 (450)
129 TIGR03015 pepcterm_ATPase puta 98.5 2.9E-06 6.2E-11 86.4 14.4 170 384-570 20-207 (269)
130 TIGR02974 phageshock_pspF psp 98.5 2.2E-06 4.7E-11 90.4 13.7 167 392-571 8-190 (329)
131 KOG0991|consensus 98.4 5.6E-07 1.2E-11 87.8 8.2 166 366-568 16-185 (333)
132 PRK05642 DNA replication initi 98.4 1.8E-06 4E-11 86.5 12.3 131 407-568 46-179 (234)
133 PRK14951 DNA polymerase III su 98.4 2.3E-06 4.9E-11 96.6 13.5 143 398-569 27-197 (618)
134 PF13173 AAA_14: AAA domain 98.4 1.4E-06 3.1E-11 78.8 9.8 126 405-559 1-126 (128)
135 PRK08903 DnaA regulatory inact 98.4 2E-06 4.3E-11 85.6 11.7 127 405-568 41-170 (227)
136 TIGR01817 nifA Nif-specific re 98.4 5.5E-06 1.2E-10 93.1 16.4 174 385-571 198-387 (534)
137 PRK14959 DNA polymerase III su 98.4 3.1E-06 6.7E-11 95.1 14.1 145 397-570 26-193 (624)
138 PRK14952 DNA polymerase III su 98.4 5.1E-06 1.1E-10 93.4 15.7 142 399-569 25-191 (584)
139 PRK11608 pspF phage shock prot 98.4 4.8E-06 1E-10 87.7 14.6 176 385-571 8-197 (326)
140 PRK08181 transposase; Validate 98.4 4.6E-07 1E-11 92.5 6.6 135 398-556 98-243 (269)
141 KOG0735|consensus 98.4 1.4E-06 3.1E-11 96.3 10.4 167 385-572 411-590 (952)
142 PRK07133 DNA polymerase III su 98.4 5E-06 1.1E-10 94.7 15.2 142 399-569 30-191 (725)
143 PRK14963 DNA polymerase III su 98.4 8.3E-06 1.8E-10 90.5 16.2 143 399-570 26-190 (504)
144 PRK14969 DNA polymerase III su 98.4 4.6E-06 1E-10 93.2 14.0 142 399-569 28-192 (527)
145 PF05729 NACHT: NACHT domain 98.4 2.4E-06 5.2E-11 79.6 10.0 149 407-569 1-164 (166)
146 TIGR02329 propionate_PrpR prop 98.4 5.2E-06 1.1E-10 92.5 14.3 177 383-572 212-405 (526)
147 COG3829 RocR Transcriptional r 98.3 4E-06 8.6E-11 91.1 12.7 176 380-571 242-437 (560)
148 PRK09087 hypothetical protein; 98.3 4.5E-06 9.7E-11 83.3 12.3 122 406-570 44-168 (226)
149 PRK08451 DNA polymerase III su 98.3 9.1E-06 2E-10 90.2 15.8 142 399-569 26-190 (535)
150 smart00382 AAA ATPases associa 98.3 3.5E-06 7.5E-11 75.0 10.3 40 406-446 2-41 (148)
151 PRK05563 DNA polymerase III su 98.3 5.1E-06 1.1E-10 93.5 13.9 134 407-569 39-192 (559)
152 TIGR00382 clpX endopeptidase C 98.3 2.6E-06 5.6E-11 91.8 10.9 153 406-567 116-330 (413)
153 TIGR02030 BchI-ChlI magnesium 98.3 5.3E-06 1.1E-10 87.4 12.8 85 474-567 131-218 (337)
154 KOG0989|consensus 98.3 2.9E-06 6.4E-11 86.0 10.3 144 399-568 49-201 (346)
155 PRK14970 DNA polymerase III su 98.3 1.2E-05 2.6E-10 85.9 15.8 143 399-570 29-182 (367)
156 KOG0744|consensus 98.3 2E-06 4.3E-11 87.6 8.6 150 403-573 174-345 (423)
157 PRK07764 DNA polymerase III su 98.3 9E-06 2E-10 94.8 15.3 142 399-569 27-193 (824)
158 PRK10923 glnG nitrogen regulat 98.3 9.1E-06 2E-10 89.7 14.7 175 384-571 139-329 (469)
159 KOG0651|consensus 98.3 2.7E-06 6E-11 86.2 9.4 142 402-563 162-311 (388)
160 KOG2004|consensus 98.3 2.8E-06 6.1E-11 94.2 10.2 145 406-569 438-597 (906)
161 PRK05896 DNA polymerase III su 98.3 7.5E-06 1.6E-10 91.6 13.7 134 407-569 39-192 (605)
162 COG1474 CDC6 Cdc6-related prot 98.3 1.1E-05 2.3E-10 86.1 14.3 166 393-574 27-209 (366)
163 PRK15424 propionate catabolism 98.3 8.1E-06 1.7E-10 91.0 13.6 178 382-571 218-419 (538)
164 PRK15429 formate hydrogenlyase 98.3 1.5E-05 3.2E-10 92.3 16.2 175 384-571 377-567 (686)
165 PRK06526 transposase; Provisio 98.2 4.4E-07 9.6E-12 92.0 2.5 131 401-557 93-236 (254)
166 PRK14965 DNA polymerase III su 98.2 1.1E-05 2.3E-10 91.3 13.4 143 399-570 28-193 (576)
167 TIGR02031 BchD-ChlD magnesium 98.2 6.4E-06 1.4E-10 93.2 11.5 150 407-568 17-174 (589)
168 PRK14953 DNA polymerase III su 98.2 2.1E-05 4.5E-10 87.0 15.2 144 398-570 27-193 (486)
169 PRK05022 anaerobic nitric oxid 98.2 2.2E-05 4.7E-10 87.7 15.0 170 389-571 193-378 (509)
170 CHL00081 chlI Mg-protoporyphyr 98.2 1.5E-05 3.3E-10 84.1 13.0 84 475-567 145-231 (350)
171 PRK14948 DNA polymerase III su 98.2 2.9E-05 6.2E-10 88.3 15.8 142 399-569 28-194 (620)
172 PRK11388 DNA-binding transcrip 98.2 2.7E-05 5.9E-10 89.4 15.5 182 381-571 323-513 (638)
173 PTZ00111 DNA replication licen 98.2 7.3E-06 1.6E-10 94.8 10.7 152 406-571 492-660 (915)
174 PRK06647 DNA polymerase III su 98.2 2.4E-05 5.2E-10 87.9 14.5 142 399-569 28-192 (563)
175 COG1221 PspF Transcriptional r 98.2 6.7E-06 1.5E-10 87.7 9.5 160 384-557 79-251 (403)
176 PRK07940 DNA polymerase III su 98.2 2.9E-05 6.4E-10 83.6 14.5 130 407-565 37-186 (394)
177 KOG1969|consensus 98.2 2E-05 4.4E-10 87.8 13.4 144 407-568 327-481 (877)
178 PRK06305 DNA polymerase III su 98.2 3.3E-05 7.2E-10 84.8 14.9 143 398-569 28-194 (451)
179 TIGR00602 rad24 checkpoint pro 98.2 1.1E-05 2.3E-10 91.4 11.4 181 365-570 72-289 (637)
180 TIGR02903 spore_lon_C ATP-depe 98.2 2.6E-05 5.5E-10 88.8 14.4 157 405-570 174-368 (615)
181 PRK10820 DNA-binding transcrip 98.1 3.6E-05 7.8E-10 86.1 15.2 180 379-571 200-395 (520)
182 PF13401 AAA_22: AAA domain; P 98.1 2.4E-06 5.3E-11 76.8 4.7 109 404-531 2-125 (131)
183 PRK09183 transposase/IS protei 98.1 1.4E-06 3E-11 88.7 3.3 131 403-556 99-241 (259)
184 TIGR02442 Cob-chelat-sub cobal 98.1 2.8E-05 6.1E-10 88.9 14.1 148 407-566 26-212 (633)
185 KOG0730|consensus 98.1 1.5E-05 3.2E-10 88.2 10.7 143 405-571 217-367 (693)
186 PRK09111 DNA polymerase III su 98.1 5.2E-05 1.1E-09 85.7 15.3 143 399-570 36-206 (598)
187 PRK14950 DNA polymerase III su 98.1 5.4E-05 1.2E-09 85.9 15.4 142 399-569 28-193 (585)
188 PRK14955 DNA polymerase III su 98.1 3.4E-05 7.4E-10 83.4 12.7 143 398-569 27-200 (397)
189 COG0593 DnaA ATPase involved i 98.1 2.6E-05 5.7E-10 83.4 11.5 159 383-567 86-256 (408)
190 COG1239 ChlI Mg-chelatase subu 98.1 1.9E-05 4.2E-10 83.7 10.2 145 407-561 39-224 (423)
191 COG2204 AtoC Response regulato 98.0 7.5E-05 1.6E-09 81.1 14.8 176 383-573 141-334 (464)
192 KOG0736|consensus 98.0 2.4E-05 5.1E-10 87.7 11.0 144 406-571 431-579 (953)
193 PF03215 Rad17: Rad17 cell cyc 98.0 6.6E-05 1.4E-09 83.5 14.2 181 365-571 7-229 (519)
194 COG1219 ClpX ATP-dependent pro 98.0 2.2E-05 4.8E-10 80.1 9.3 76 405-487 96-175 (408)
195 PRK14971 DNA polymerase III su 98.0 0.0001 2.2E-09 83.8 15.4 142 399-569 29-194 (614)
196 PF00493 MCM: MCM2/3/5 family 98.0 4.2E-06 9.1E-11 88.3 4.0 154 405-574 56-227 (331)
197 PF01695 IstB_IS21: IstB-like 98.0 9.8E-07 2.1E-11 84.8 -1.3 96 400-503 41-137 (178)
198 KOG1051|consensus 97.9 1.6E-05 3.4E-10 92.0 7.7 158 397-570 198-365 (898)
199 PF04665 Pox_A32: Poxvirus A32 97.9 0.00018 3.9E-09 72.1 14.0 144 400-568 7-170 (241)
200 PRK08116 hypothetical protein; 97.9 1.3E-05 2.8E-10 82.0 6.0 38 405-443 113-150 (268)
201 PRK14954 DNA polymerase III su 97.9 0.00015 3.3E-09 82.2 14.9 142 399-569 28-200 (620)
202 PF14516 AAA_35: AAA-like doma 97.9 0.00016 3.5E-09 76.3 14.2 163 397-567 22-213 (331)
203 PRK04132 replication factor C 97.9 8.6E-05 1.9E-09 86.4 12.8 128 414-569 574-703 (846)
204 TIGR02915 PEP_resp_reg putativ 97.9 0.00019 4.2E-09 78.6 15.1 167 392-571 148-330 (445)
205 COG1484 DnaC DNA replication p 97.9 1.5E-05 3.3E-10 80.8 5.6 95 402-502 101-195 (254)
206 COG2607 Predicted ATPase (AAA+ 97.9 8.1E-05 1.8E-09 73.4 9.6 134 407-569 86-240 (287)
207 PRK06835 DNA replication prote 97.8 3.4E-05 7.4E-10 81.1 7.5 100 398-505 175-277 (329)
208 PF14532 Sigma54_activ_2: Sigm 97.8 1.9E-05 4.1E-10 72.4 4.9 125 392-553 7-136 (138)
209 PRK09112 DNA polymerase III su 97.8 0.00042 9E-09 73.7 15.5 76 470-567 137-212 (351)
210 PRK08058 DNA polymerase III su 97.8 0.00034 7.4E-09 73.8 14.5 140 398-566 17-180 (329)
211 PF01637 Arch_ATPase: Archaeal 97.8 3.8E-05 8.3E-10 75.5 6.8 155 406-571 20-207 (234)
212 COG0470 HolB ATPase involved i 97.8 0.00017 3.6E-09 75.3 11.9 127 408-559 26-172 (325)
213 KOG2035|consensus 97.8 0.00022 4.7E-09 71.7 11.7 152 393-569 19-200 (351)
214 COG3604 FhlA Transcriptional r 97.8 0.00019 4.2E-09 77.4 11.5 135 385-532 225-368 (550)
215 PRK12377 putative replication 97.7 4.7E-05 1E-09 76.9 6.2 97 399-507 94-192 (248)
216 PRK13406 bchD magnesium chelat 97.7 0.00019 4.1E-09 80.9 11.0 141 408-560 27-174 (584)
217 PRK05707 DNA polymerase III su 97.7 0.00035 7.7E-09 73.5 12.3 131 407-566 23-176 (328)
218 COG2812 DnaX DNA polymerase II 97.7 0.00013 2.7E-09 80.5 9.0 147 399-569 28-192 (515)
219 PRK05201 hslU ATP-dependent pr 97.7 0.00025 5.5E-09 76.1 11.0 94 474-572 249-356 (443)
220 COG1241 MCM2 Predicted ATPase 97.7 3E-05 6.4E-10 87.8 3.9 165 390-574 291-489 (682)
221 PRK11361 acetoacetate metaboli 97.7 0.00051 1.1E-08 75.5 13.3 170 389-571 149-334 (457)
222 TIGR01818 ntrC nitrogen regula 97.6 0.00073 1.6E-08 74.4 14.4 166 393-571 144-325 (463)
223 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00029 6.3E-09 71.9 10.1 94 138-236 145-239 (262)
224 TIGR00390 hslU ATP-dependent p 97.6 0.00031 6.8E-09 75.3 10.6 93 474-571 247-353 (441)
225 PRK15115 response regulator Gl 97.6 0.00049 1.1E-08 75.4 12.5 166 393-571 144-325 (444)
226 smart00763 AAA_PrkA PrkA AAA d 97.6 0.00043 9.4E-09 73.1 11.3 50 521-570 276-329 (361)
227 PRK07471 DNA polymerase III su 97.6 0.0014 3.1E-08 70.0 15.1 77 469-567 136-212 (365)
228 PRK06921 hypothetical protein; 97.6 0.00023 5E-09 72.8 8.5 39 405-443 116-154 (266)
229 PF00931 NB-ARC: NB-ARC domain 97.5 0.00065 1.4E-08 69.6 11.5 150 397-571 7-173 (287)
230 PF12780 AAA_8: P-loop contain 97.5 0.00017 3.7E-09 73.7 6.7 173 389-571 13-213 (268)
231 PRK08939 primosomal protein Dn 97.5 0.00013 2.7E-09 76.2 5.9 91 405-506 155-246 (306)
232 PRK05564 DNA polymerase III su 97.5 0.0019 4.1E-08 67.6 14.2 140 399-567 16-164 (313)
233 KOG0741|consensus 97.5 0.0001 2.3E-09 79.5 4.7 148 403-569 253-415 (744)
234 KOG0745|consensus 97.5 7.9E-05 1.7E-09 78.8 3.3 79 405-487 225-304 (564)
235 PRK07952 DNA replication prote 97.4 0.00042 9.1E-09 69.9 8.2 89 407-507 100-191 (244)
236 KOG0990|consensus 97.4 0.00021 4.5E-09 73.2 5.1 140 407-569 63-204 (360)
237 KOG0732|consensus 97.4 0.00046 9.9E-09 80.8 8.5 151 403-572 296-455 (1080)
238 PF13177 DNA_pol3_delta2: DNA 97.4 0.0034 7.3E-08 59.3 13.0 131 397-556 7-162 (162)
239 KOG1051|consensus 97.3 0.00021 4.6E-09 82.8 5.4 113 408-531 593-710 (898)
240 PF07693 KAP_NTPase: KAP famil 97.3 0.0029 6.3E-08 66.1 13.2 86 472-573 170-268 (325)
241 COG4088 Predicted nucleotide k 97.3 0.00026 5.7E-09 68.3 4.1 29 409-438 4-32 (261)
242 PRK06964 DNA polymerase III su 97.3 0.003 6.4E-08 66.9 12.5 76 469-566 127-202 (342)
243 PRK08699 DNA polymerase III su 97.3 0.0041 8.9E-08 65.5 13.5 129 406-565 21-182 (325)
244 KOG2227|consensus 97.3 0.0026 5.6E-08 68.4 11.9 155 396-570 163-340 (529)
245 PRK10365 transcriptional regul 97.3 0.0044 9.5E-08 67.7 14.3 160 399-571 155-330 (441)
246 PRK06871 DNA polymerase III su 97.2 0.0031 6.7E-08 66.2 12.3 131 407-566 25-177 (325)
247 PF03969 AFG1_ATPase: AFG1-lik 97.2 0.00064 1.4E-08 72.5 7.3 125 405-555 61-201 (362)
248 PRK08769 DNA polymerase III su 97.2 0.0044 9.5E-08 65.0 12.9 130 408-566 28-183 (319)
249 cd01128 rho_factor Transcripti 97.2 0.00031 6.7E-09 71.1 4.0 105 403-509 13-151 (249)
250 KOG0478|consensus 97.1 0.0014 3.1E-08 73.0 8.5 150 407-573 463-631 (804)
251 PRK07399 DNA polymerase III su 97.1 0.0087 1.9E-07 62.7 13.4 76 470-568 120-195 (314)
252 TIGR02688 conserved hypothetic 97.0 0.0053 1.2E-07 66.1 11.8 98 392-510 193-294 (449)
253 PF00910 RNA_helicase: RNA hel 97.0 0.00076 1.6E-08 59.1 4.3 22 409-430 1-22 (107)
254 KOG1514|consensus 97.0 0.0083 1.8E-07 67.4 13.1 156 394-571 407-592 (767)
255 KOG0480|consensus 97.0 0.00053 1.2E-08 75.7 3.5 151 403-571 375-545 (764)
256 PRK06090 DNA polymerase III su 97.0 0.013 2.9E-07 61.4 13.7 131 407-566 26-178 (319)
257 COG0194 Gmk Guanylate kinase [ 96.9 0.0021 4.6E-08 61.4 6.5 25 405-429 3-27 (191)
258 COG3283 TyrR Transcriptional r 96.9 0.0084 1.8E-07 62.5 11.2 161 378-555 199-370 (511)
259 PRK13851 type IV secretion sys 96.9 0.0015 3.2E-08 69.2 5.7 38 394-431 150-187 (344)
260 PRK07993 DNA polymerase III su 96.9 0.014 3E-07 61.8 12.9 130 407-565 25-177 (334)
261 TIGR00767 rho transcription te 96.8 0.0026 5.7E-08 68.1 7.1 82 403-485 165-266 (415)
262 PRK13900 type IV secretion sys 96.8 0.002 4.4E-08 68.0 6.2 38 394-431 148-185 (332)
263 PF13604 AAA_30: AAA domain; P 96.8 0.0031 6.7E-08 61.5 7.1 45 397-442 8-53 (196)
264 PF13207 AAA_17: AAA domain; P 96.8 0.0016 3.6E-08 57.6 4.5 22 409-430 2-23 (121)
265 PF06068 TIP49: TIP49 C-termin 96.8 0.0027 5.9E-08 66.9 6.7 63 384-448 24-90 (398)
266 cd01130 VirB11-like_ATPase Typ 96.7 0.0026 5.7E-08 61.3 6.0 36 395-430 14-49 (186)
267 KOG1970|consensus 96.7 0.0095 2.1E-07 65.3 10.5 24 407-430 111-134 (634)
268 PRK09376 rho transcription ter 96.7 0.0017 3.7E-08 69.2 4.6 28 403-430 166-193 (416)
269 COG1224 TIP49 DNA helicase TIP 96.7 0.0036 7.8E-08 65.2 6.7 62 383-446 38-103 (450)
270 PF05621 TniB: Bacterial TniB 96.7 0.01 2.2E-07 61.2 10.0 157 385-557 35-215 (302)
271 PF13671 AAA_33: AAA domain; P 96.6 0.0015 3.2E-08 59.6 3.2 22 409-430 2-23 (143)
272 TIGR02782 TrbB_P P-type conjug 96.5 0.0045 9.8E-08 64.4 6.6 36 395-430 121-156 (299)
273 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0035 7.7E-08 57.2 5.0 41 391-431 7-47 (133)
274 PF13191 AAA_16: AAA ATPase do 96.5 0.0023 5.1E-08 60.7 4.1 41 405-446 23-63 (185)
275 PF00437 T2SE: Type II/IV secr 96.5 0.0038 8.3E-08 63.7 5.4 39 393-431 114-152 (270)
276 PRK13833 conjugal transfer pro 96.5 0.0046 9.9E-08 64.9 6.0 36 395-430 133-168 (323)
277 PRK04296 thymidine kinase; Pro 96.4 0.011 2.5E-07 57.2 8.3 24 407-430 3-26 (190)
278 KOG0477|consensus 96.4 0.0011 2.5E-08 72.9 1.3 149 406-573 482-655 (854)
279 TIGR00764 lon_rel lon-related 96.4 0.0089 1.9E-07 68.2 8.5 55 397-453 28-83 (608)
280 COG1373 Predicted ATPase (AAA+ 96.4 0.034 7.4E-07 60.2 12.3 122 408-562 39-161 (398)
281 PF13245 AAA_19: Part of AAA d 96.4 0.0045 9.7E-08 50.9 4.2 28 402-430 6-34 (76)
282 COG3284 AcoR Transcriptional a 96.3 0.026 5.7E-07 63.0 11.3 163 390-569 320-504 (606)
283 COG3267 ExeA Type II secretory 96.3 0.05 1.1E-06 54.6 11.9 147 398-568 42-213 (269)
284 PHA02774 E1; Provisional 96.3 0.032 7E-07 62.3 11.7 147 394-569 419-582 (613)
285 PRK12608 transcription termina 96.3 0.0057 1.2E-07 65.0 5.6 111 398-508 123-267 (380)
286 TIGR02788 VirB11 P-type DNA tr 96.3 0.0061 1.3E-07 63.7 5.6 37 395-431 133-169 (308)
287 PRK04841 transcriptional regul 96.2 0.073 1.6E-06 63.6 14.8 149 396-569 20-200 (903)
288 COG1419 FlhF Flagellar GTP-bin 96.1 0.021 4.5E-07 61.0 8.6 97 406-507 203-310 (407)
289 PRK14722 flhF flagellar biosyn 96.1 0.02 4.3E-07 61.3 8.5 30 401-430 132-161 (374)
290 COG5245 DYN1 Dynein, heavy cha 96.1 0.036 7.9E-07 66.7 10.8 80 141-229 1686-1767(3164)
291 PF13238 AAA_18: AAA domain; P 96.1 0.0051 1.1E-07 54.6 3.2 22 409-430 1-22 (129)
292 KOG2228|consensus 96.0 0.013 2.8E-07 60.8 6.3 149 405-568 48-219 (408)
293 PRK13894 conjugal transfer ATP 96.0 0.0081 1.8E-07 63.1 4.9 34 396-429 138-171 (319)
294 PF13086 AAA_11: AAA domain; P 96.0 0.0074 1.6E-07 59.1 4.2 32 399-430 10-41 (236)
295 TIGR01420 pilT_fam pilus retra 95.9 0.012 2.5E-07 62.6 5.9 34 398-431 114-147 (343)
296 KOG3347|consensus 95.9 0.012 2.7E-07 54.2 5.1 133 405-582 6-147 (176)
297 PRK08118 topology modulation p 95.9 0.0062 1.3E-07 57.8 3.2 24 407-430 2-25 (167)
298 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.024 5.2E-07 52.3 7.0 71 403-483 23-97 (144)
299 PF08433 KTI12: Chromatin asso 95.9 0.0018 3.9E-08 66.4 -0.7 33 409-442 4-36 (270)
300 PRK13764 ATPase; Provisional 95.8 0.012 2.6E-07 66.5 5.8 35 397-431 248-282 (602)
301 PHA02624 large T antigen; Prov 95.8 0.017 3.6E-07 64.8 6.7 36 395-430 417-455 (647)
302 cd01131 PilT Pilus retraction 95.8 0.01 2.3E-07 57.8 4.6 24 408-431 3-26 (198)
303 PRK00131 aroK shikimate kinase 95.8 0.0079 1.7E-07 56.5 3.4 26 405-430 3-28 (175)
304 PF12775 AAA_7: P-loop contain 95.7 0.075 1.6E-06 54.6 10.6 89 143-232 147-250 (272)
305 PF09848 DUF2075: Uncharacteri 95.7 0.034 7.3E-07 59.2 8.4 99 407-507 2-118 (352)
306 PF00625 Guanylate_kin: Guanyl 95.7 0.015 3.2E-07 55.8 5.1 25 406-430 2-26 (183)
307 KOG0482|consensus 95.7 0.0049 1.1E-07 66.7 1.8 157 405-576 374-547 (721)
308 cd01124 KaiC KaiC is a circadi 95.6 0.022 4.8E-07 54.3 6.0 44 409-455 2-45 (187)
309 cd00464 SK Shikimate kinase (S 95.6 0.0098 2.1E-07 54.8 3.3 23 408-430 1-23 (154)
310 PF03266 NTPase_1: NTPase; In 95.6 0.0091 2E-07 56.8 3.1 65 476-560 97-163 (168)
311 PRK10536 hypothetical protein; 95.6 0.033 7.2E-07 56.4 7.2 52 392-445 61-113 (262)
312 cd02019 NK Nucleoside/nucleoti 95.6 0.012 2.6E-07 47.2 3.2 22 409-430 2-23 (69)
313 PRK14530 adenylate kinase; Pro 95.5 0.014 3E-07 57.6 4.2 25 406-430 3-27 (215)
314 PRK07132 DNA polymerase III su 95.5 0.34 7.4E-06 50.5 14.6 140 398-566 7-160 (299)
315 cd01129 PulE-GspE PulE/GspE Th 95.5 0.026 5.5E-07 57.8 6.2 33 399-431 72-105 (264)
316 PHA00729 NTP-binding motif con 95.5 0.01 2.2E-07 59.0 3.1 24 407-430 18-41 (226)
317 cd00227 CPT Chloramphenicol (C 95.5 0.012 2.5E-07 56.2 3.4 25 406-430 2-26 (175)
318 TIGR02237 recomb_radB DNA repa 95.5 0.025 5.5E-07 55.2 5.9 51 406-458 12-62 (209)
319 KOG1808|consensus 95.5 0.0074 1.6E-07 74.7 2.5 158 390-567 1030-1193(1856)
320 PF02367 UPF0079: Uncharacteri 95.5 0.02 4.3E-07 51.6 4.7 40 392-431 1-40 (123)
321 PRK14532 adenylate kinase; Pro 95.5 0.013 2.8E-07 56.3 3.8 23 408-430 2-24 (188)
322 COG0467 RAD55 RecA-superfamily 95.5 0.026 5.6E-07 57.4 6.1 52 403-457 20-71 (260)
323 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.014 3E-07 55.7 3.9 22 409-430 2-23 (183)
324 PRK07261 topology modulation p 95.5 0.011 2.5E-07 56.2 3.2 23 408-430 2-24 (171)
325 PF13555 AAA_29: P-loop contai 95.4 0.014 3E-07 46.0 2.9 24 407-430 24-47 (62)
326 TIGR02524 dot_icm_DotB Dot/Icm 95.4 0.017 3.7E-07 61.6 4.6 33 398-430 126-158 (358)
327 cd01120 RecA-like_NTPases RecA 95.4 0.02 4.3E-07 52.6 4.5 35 409-444 2-36 (165)
328 PRK03839 putative kinase; Prov 95.3 0.016 3.4E-07 55.4 3.8 23 408-430 2-24 (180)
329 KOG0741|consensus 95.3 0.013 2.8E-07 63.9 3.4 67 407-485 539-609 (744)
330 PRK14531 adenylate kinase; Pro 95.3 0.013 2.9E-07 56.3 3.3 24 407-430 3-26 (183)
331 TIGR03263 guanyl_kin guanylate 95.3 0.012 2.6E-07 56.0 2.9 25 406-430 1-25 (180)
332 PRK10078 ribose 1,5-bisphospho 95.3 0.013 2.7E-07 56.5 3.0 25 406-430 2-26 (186)
333 PF03193 DUF258: Protein of un 95.3 0.023 5E-07 53.6 4.6 30 399-429 29-58 (161)
334 PRK05541 adenylylsulfate kinas 95.3 0.018 3.9E-07 54.8 3.9 29 403-431 4-32 (176)
335 PRK13947 shikimate kinase; Pro 95.3 0.017 3.8E-07 54.4 3.8 23 408-430 3-25 (171)
336 COG1485 Predicted ATPase [Gene 95.3 0.077 1.7E-06 55.6 8.8 124 406-555 65-204 (367)
337 TIGR02322 phosphon_PhnN phosph 95.3 0.014 3.1E-07 55.6 3.2 24 407-430 2-25 (179)
338 PF08477 Miro: Miro-like prote 95.2 0.016 3.4E-07 50.9 3.2 23 408-430 1-23 (119)
339 COG2805 PilT Tfp pilus assembl 95.2 0.025 5.4E-07 58.0 4.9 45 386-430 104-149 (353)
340 COG0630 VirB11 Type IV secreto 95.2 0.034 7.3E-07 58.3 6.1 32 399-430 136-167 (312)
341 PRK00625 shikimate kinase; Pro 95.2 0.019 4.1E-07 54.9 3.9 23 408-430 2-24 (173)
342 PRK05917 DNA polymerase III su 95.2 0.22 4.8E-06 51.5 11.9 133 394-556 5-155 (290)
343 TIGR02525 plasmid_TraJ plasmid 95.2 0.02 4.3E-07 61.4 4.5 34 397-430 140-173 (372)
344 TIGR03819 heli_sec_ATPase heli 95.2 0.029 6.4E-07 59.4 5.7 37 395-431 167-203 (340)
345 TIGR01313 therm_gnt_kin carboh 95.2 0.014 2.9E-07 54.8 2.8 22 409-430 1-22 (163)
346 PF00448 SRP54: SRP54-type pro 95.2 0.034 7.3E-07 54.3 5.7 36 408-444 3-38 (196)
347 PRK14737 gmk guanylate kinase; 95.2 0.014 3.1E-07 56.4 2.9 26 405-430 3-28 (186)
348 COG0563 Adk Adenylate kinase a 95.1 0.017 3.6E-07 55.5 3.3 23 408-430 2-24 (178)
349 PRK06762 hypothetical protein; 95.1 0.017 3.6E-07 54.3 3.2 23 408-430 4-26 (166)
350 cd03222 ABC_RNaseL_inhibitor T 95.1 0.076 1.6E-06 51.0 7.8 94 403-507 22-121 (177)
351 PF03029 ATP_bind_1: Conserved 95.1 0.023 4.9E-07 57.2 4.3 37 411-448 1-37 (238)
352 COG4525 TauB ABC-type taurine 95.1 0.036 7.7E-07 53.6 5.4 66 400-489 25-90 (259)
353 cd02021 GntK Gluconate kinase 95.1 0.016 3.6E-07 53.3 3.1 22 409-430 2-23 (150)
354 PRK09361 radB DNA repair and r 95.1 0.04 8.6E-07 54.6 5.9 51 405-457 22-72 (225)
355 TIGR01360 aden_kin_iso1 adenyl 95.1 0.017 3.8E-07 55.0 3.2 24 407-430 4-27 (188)
356 cd01428 ADK Adenylate kinase ( 95.1 0.023 4.9E-07 54.6 4.0 23 408-430 1-23 (194)
357 TIGR02768 TraA_Ti Ti-type conj 95.1 0.081 1.7E-06 62.0 9.2 43 397-440 359-401 (744)
358 cd01394 radB RadB. The archaea 95.0 0.059 1.3E-06 53.0 6.9 43 399-442 8-54 (218)
359 PRK00300 gmk guanylate kinase; 95.0 0.015 3.3E-07 56.6 2.5 27 404-430 3-29 (205)
360 PF10662 PduV-EutP: Ethanolami 95.0 0.018 3.9E-07 53.2 2.8 23 407-429 2-24 (143)
361 PRK13765 ATP-dependent proteas 94.9 0.038 8.3E-07 63.2 6.0 34 398-431 42-75 (637)
362 PRK10646 ADP-binding protein; 94.9 0.04 8.6E-07 51.5 5.0 41 391-431 13-53 (153)
363 PF03205 MobB: Molybdopterin g 94.9 0.028 6.1E-07 51.8 4.0 32 409-441 3-34 (140)
364 smart00072 GuKc Guanylate kina 94.9 0.02 4.4E-07 55.0 3.1 25 406-430 2-26 (184)
365 PRK13949 shikimate kinase; Pro 94.9 0.021 4.6E-07 54.3 3.2 24 407-430 2-25 (169)
366 TIGR02533 type_II_gspE general 94.9 0.044 9.6E-07 60.9 6.2 34 398-431 233-267 (486)
367 cd00071 GMPK Guanosine monopho 94.9 0.021 4.6E-07 52.3 3.1 23 408-430 1-23 (137)
368 PRK05703 flhF flagellar biosyn 94.9 0.077 1.7E-06 58.0 7.9 41 405-445 220-261 (424)
369 PLN02772 guanylate kinase 94.9 0.046 9.9E-07 58.6 6.0 25 406-430 135-159 (398)
370 KOG2543|consensus 94.9 0.19 4E-06 53.3 10.2 136 408-567 32-192 (438)
371 cd01123 Rad51_DMC1_radA Rad51_ 94.9 0.056 1.2E-06 53.7 6.3 52 405-456 18-74 (235)
372 TIGR03574 selen_PSTK L-seryl-t 94.8 0.027 5.9E-07 56.8 3.9 22 409-430 2-23 (249)
373 cd02027 APSK Adenosine 5'-phos 94.8 0.031 6.7E-07 51.9 4.0 22 409-430 2-23 (149)
374 PF06745 KaiC: KaiC; InterPro 94.8 0.041 8.9E-07 54.5 5.2 51 405-457 18-68 (226)
375 PRK08233 hypothetical protein; 94.8 0.022 4.8E-07 54.0 3.1 24 407-430 4-27 (182)
376 PF02562 PhoH: PhoH-like prote 94.8 0.047 1E-06 53.6 5.3 52 392-444 6-57 (205)
377 COG0378 HypB Ni2+-binding GTPa 94.7 0.051 1.1E-06 52.4 5.4 38 408-447 15-52 (202)
378 cd00820 PEPCK_HprK Phosphoenol 94.7 0.019 4.1E-07 50.3 2.2 24 404-427 13-36 (107)
379 TIGR01448 recD_rel helicase, p 94.7 0.088 1.9E-06 61.4 8.3 31 399-430 332-362 (720)
380 cd01122 GP4d_helicase GP4d_hel 94.7 0.14 3E-06 52.2 8.8 51 403-455 27-77 (271)
381 PRK10436 hypothetical protein; 94.7 0.06 1.3E-06 59.4 6.4 31 401-431 213-243 (462)
382 PRK14738 gmk guanylate kinase; 94.6 0.024 5.2E-07 55.7 3.0 24 405-428 12-35 (206)
383 cd00046 DEXDc DEAD-like helica 94.6 0.052 1.1E-06 47.7 5.0 24 407-430 1-24 (144)
384 COG1126 GlnQ ABC-type polar am 94.6 0.016 3.5E-07 56.8 1.7 26 401-426 23-48 (240)
385 COG2804 PulE Type II secretory 94.6 0.055 1.2E-06 59.3 5.9 33 399-431 250-283 (500)
386 PRK05057 aroK shikimate kinase 94.6 0.028 6.1E-07 53.5 3.3 25 406-430 4-28 (172)
387 PF00005 ABC_tran: ABC transpo 94.6 0.019 4.2E-07 51.8 2.0 28 403-430 8-35 (137)
388 cd03115 SRP The signal recogni 94.5 0.058 1.3E-06 51.0 5.2 37 409-446 3-39 (173)
389 PRK06217 hypothetical protein; 94.5 0.028 6E-07 54.0 3.0 23 408-430 3-25 (183)
390 KOG0060|consensus 94.5 0.024 5.2E-07 62.6 2.7 30 399-428 454-483 (659)
391 TIGR03499 FlhF flagellar biosy 94.5 0.046 9.9E-07 56.4 4.7 41 405-445 193-234 (282)
392 PF05970 PIF1: PIF1-like helic 94.5 0.1 2.2E-06 56.0 7.4 28 404-431 20-47 (364)
393 PRK14527 adenylate kinase; Pro 94.5 0.023 5E-07 54.9 2.4 26 405-430 5-30 (191)
394 TIGR02538 type_IV_pilB type IV 94.4 0.067 1.5E-06 60.6 6.4 34 398-431 308-341 (564)
395 cd02020 CMPK Cytidine monophos 94.4 0.033 7.1E-07 50.7 3.2 22 409-430 2-23 (147)
396 cd01918 HprK_C HprK/P, the bif 94.4 0.03 6.4E-07 52.1 2.9 25 405-429 13-37 (149)
397 PF01926 MMR_HSR1: 50S ribosom 94.4 0.032 6.9E-07 49.0 3.0 20 409-428 2-21 (116)
398 TIGR01351 adk adenylate kinase 94.4 0.037 8.1E-07 54.3 3.7 23 408-430 1-23 (210)
399 cd01672 TMPK Thymidine monopho 94.4 0.076 1.7E-06 50.8 5.9 34 409-443 3-36 (200)
400 KOG1942|consensus 94.4 0.042 9.2E-07 56.0 4.1 33 536-568 348-380 (456)
401 PTZ00088 adenylate kinase 1; P 94.4 0.037 8.1E-07 55.3 3.7 24 407-430 7-30 (229)
402 PF05272 VirE: Virulence-assoc 94.4 0.16 3.4E-06 49.7 8.0 114 407-554 53-169 (198)
403 PRK13889 conjugal transfer rel 94.4 0.13 2.9E-06 61.4 8.9 43 398-441 354-396 (988)
404 COG3854 SpoIIIAA ncharacterize 94.4 0.046 1E-06 54.1 4.2 33 398-430 128-161 (308)
405 PRK08533 flagellar accessory p 94.4 0.083 1.8E-06 52.8 6.2 49 403-454 21-69 (230)
406 PRK02496 adk adenylate kinase; 94.4 0.031 6.8E-07 53.5 3.0 23 408-430 3-25 (184)
407 cd02028 UMPK_like Uridine mono 94.4 0.046 1E-06 52.4 4.2 22 409-430 2-23 (179)
408 KOG0922|consensus 94.3 0.41 8.9E-06 53.9 11.9 162 394-580 54-262 (674)
409 COG4650 RtcR Sigma54-dependent 94.3 0.13 2.9E-06 52.4 7.4 28 400-427 202-229 (531)
410 PRK14528 adenylate kinase; Pro 94.3 0.034 7.3E-07 53.7 3.2 24 407-430 2-25 (186)
411 PRK10875 recD exonuclease V su 94.3 0.095 2.1E-06 59.8 7.1 26 405-430 166-191 (615)
412 TIGR03877 thermo_KaiC_1 KaiC d 94.2 0.085 1.8E-06 52.9 6.0 48 405-455 20-67 (237)
413 PLN02674 adenylate kinase 94.2 0.052 1.1E-06 54.8 4.3 25 406-430 31-55 (244)
414 COG0703 AroK Shikimate kinase 94.2 0.041 9E-07 52.3 3.4 25 406-430 2-26 (172)
415 PRK04040 adenylate kinase; Pro 94.2 0.037 8.1E-07 53.6 3.2 24 407-430 3-26 (188)
416 PRK10751 molybdopterin-guanine 94.2 0.069 1.5E-06 51.0 4.9 36 409-445 9-44 (173)
417 PF00406 ADK: Adenylate kinase 94.2 0.05 1.1E-06 50.3 3.8 20 411-430 1-20 (151)
418 PHA02530 pseT polynucleotide k 94.2 0.036 7.8E-07 57.4 3.2 23 408-430 4-26 (300)
419 TIGR00041 DTMP_kinase thymidyl 94.1 0.09 2E-06 50.6 5.8 37 406-443 3-39 (195)
420 PLN02200 adenylate kinase fami 94.1 0.05 1.1E-06 54.6 4.0 24 407-430 44-67 (234)
421 PRK06547 hypothetical protein; 94.1 0.041 8.8E-07 52.6 3.2 23 408-430 17-39 (172)
422 COG3839 MalK ABC-type sugar tr 94.1 0.033 7.1E-07 58.7 2.7 27 402-428 25-51 (338)
423 PRK04328 hypothetical protein; 94.1 0.11 2.3E-06 52.7 6.4 48 405-455 22-69 (249)
424 COG1618 Predicted nucleotide k 94.1 0.066 1.4E-06 50.2 4.4 33 406-439 5-37 (179)
425 PRK05480 uridine/cytidine kina 94.1 0.041 8.8E-07 53.9 3.2 26 405-430 5-30 (209)
426 PRK06696 uridine kinase; Valid 94.1 0.054 1.2E-06 53.7 4.1 24 408-431 24-47 (223)
427 COG4619 ABC-type uncharacteriz 94.0 0.039 8.5E-07 52.1 2.8 31 400-430 23-53 (223)
428 TIGR02858 spore_III_AA stage I 94.0 0.057 1.2E-06 55.4 4.3 37 395-431 98-136 (270)
429 TIGR03878 thermo_KaiC_2 KaiC d 94.0 0.066 1.4E-06 54.5 4.7 39 405-444 35-73 (259)
430 cd02023 UMPK Uridine monophosp 94.0 0.043 9.3E-07 53.2 3.2 22 409-430 2-23 (198)
431 PF00485 PRK: Phosphoribulokin 94.0 0.044 9.5E-07 53.1 3.2 23 409-431 2-24 (194)
432 PRK00889 adenylylsulfate kinas 94.0 0.058 1.3E-06 51.2 4.0 26 405-430 3-28 (175)
433 PF13521 AAA_28: AAA domain; P 94.0 0.039 8.5E-07 51.7 2.8 21 409-429 2-22 (163)
434 PRK06851 hypothetical protein; 94.0 0.068 1.5E-06 57.0 4.9 42 405-447 29-70 (367)
435 cd00876 Ras Ras family. The R 94.0 0.043 9.2E-07 50.2 3.0 22 408-429 1-22 (160)
436 PRK07667 uridine kinase; Provi 94.0 0.084 1.8E-06 51.2 5.2 36 407-443 18-53 (193)
437 cd01393 recA_like RecA is a b 94.0 0.12 2.6E-06 51.0 6.3 52 405-456 18-74 (226)
438 PRK00279 adk adenylate kinase; 93.9 0.053 1.2E-06 53.4 3.8 23 408-430 2-24 (215)
439 cd04137 RheB Rheb (Ras Homolog 93.9 0.042 9E-07 51.9 2.9 23 407-429 2-24 (180)
440 TIGR00176 mobB molybdopterin-g 93.9 0.07 1.5E-06 50.0 4.3 33 409-442 2-34 (155)
441 COG4962 CpaF Flp pilus assembl 93.9 0.088 1.9E-06 55.1 5.4 39 393-431 160-198 (355)
442 TIGR03881 KaiC_arch_4 KaiC dom 93.9 0.12 2.5E-06 51.4 6.1 47 403-452 17-63 (229)
443 PRK05973 replicative DNA helic 93.9 0.07 1.5E-06 53.6 4.5 48 403-453 61-108 (237)
444 PTZ00301 uridine kinase; Provi 93.8 0.047 1E-06 53.9 3.2 23 408-430 5-27 (210)
445 TIGR01447 recD exodeoxyribonuc 93.8 0.11 2.4E-06 59.0 6.5 31 399-430 154-184 (586)
446 PRK01184 hypothetical protein; 93.8 0.062 1.3E-06 51.4 3.9 22 408-430 3-24 (184)
447 TIGR02236 recomb_radA DNA repa 93.8 0.13 2.7E-06 53.8 6.5 54 404-457 93-151 (310)
448 KOG1968|consensus 93.8 0.22 4.7E-06 58.8 8.9 137 408-568 359-502 (871)
449 cd04160 Arfrp1 Arfrp1 subfamil 93.8 0.049 1.1E-06 50.6 3.1 22 408-429 1-22 (167)
450 PRK03731 aroL shikimate kinase 93.8 0.054 1.2E-06 51.1 3.3 24 407-430 3-26 (171)
451 COG1643 HrpA HrpA-like helicas 93.7 0.46 1E-05 55.9 11.4 34 396-429 55-88 (845)
452 PF00270 DEAD: DEAD/DEAH box h 93.7 0.19 4E-06 46.7 6.9 33 397-430 6-39 (169)
453 PRK06851 hypothetical protein; 93.7 0.1 2.2E-06 55.8 5.5 41 406-447 214-254 (367)
454 cd00154 Rab Rab family. Rab G 93.7 0.078 1.7E-06 48.0 4.1 22 408-429 2-23 (159)
455 TIGR02012 tigrfam_recA protein 93.7 0.21 4.5E-06 52.5 7.8 26 405-430 54-79 (321)
456 cd03238 ABC_UvrA The excision 93.7 0.047 1E-06 52.3 2.8 26 403-428 18-43 (176)
457 smart00175 RAB Rab subfamily o 93.7 0.073 1.6E-06 49.0 4.0 22 408-429 2-23 (164)
458 PRK04301 radA DNA repair and r 93.7 0.13 2.9E-06 53.8 6.4 54 403-456 99-157 (317)
459 TIGR00235 udk uridine kinase. 93.6 0.055 1.2E-06 53.0 3.2 25 406-430 6-30 (207)
460 PF09439 SRPRB: Signal recogni 93.6 0.054 1.2E-06 52.1 3.0 24 406-429 3-26 (181)
461 PRK13946 shikimate kinase; Pro 93.6 0.062 1.3E-06 51.7 3.5 26 405-430 9-34 (184)
462 PLN03210 Resistant to P. syrin 93.6 0.89 1.9E-05 56.2 14.3 26 405-430 206-231 (1153)
463 cd04138 H_N_K_Ras_like H-Ras/N 93.6 0.054 1.2E-06 49.6 3.0 22 408-429 3-24 (162)
464 PRK09825 idnK D-gluconate kina 93.6 0.062 1.3E-06 51.4 3.4 26 405-430 2-27 (176)
465 smart00173 RAS Ras subfamily o 93.6 0.057 1.2E-06 50.0 3.0 22 408-429 2-23 (164)
466 TIGR00376 DNA helicase, putati 93.5 0.1 2.2E-06 60.1 5.6 33 398-430 165-197 (637)
467 cd00984 DnaB_C DnaB helicase C 93.5 0.07 1.5E-06 53.3 3.8 49 403-453 10-58 (242)
468 PF12846 AAA_10: AAA-like doma 93.5 0.076 1.6E-06 54.2 4.1 25 406-430 1-25 (304)
469 KOG0925|consensus 93.5 0.44 9.5E-06 51.8 9.8 160 401-579 57-256 (699)
470 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.5 0.051 1.1E-06 53.5 2.7 28 403-430 27-54 (218)
471 COG1116 TauB ABC-type nitrate/ 93.4 0.053 1.1E-06 54.3 2.7 28 401-428 24-51 (248)
472 COG2909 MalT ATP-dependent tra 93.4 0.63 1.4E-05 54.0 11.5 121 391-530 20-168 (894)
473 COG0802 Predicted ATPase or ki 93.4 0.13 2.7E-06 47.8 5.0 41 391-431 10-50 (149)
474 TIGR00231 small_GTP small GTP- 93.4 0.058 1.3E-06 48.5 2.8 23 407-429 2-24 (161)
475 PF04851 ResIII: Type III rest 93.4 0.12 2.6E-06 48.5 5.0 35 397-431 14-50 (184)
476 cd04113 Rab4 Rab4 subfamily. 93.4 0.059 1.3E-06 49.7 2.9 22 408-429 2-23 (161)
477 cd03269 ABC_putative_ATPase Th 93.4 0.054 1.2E-06 53.0 2.7 28 403-430 23-50 (210)
478 cd03258 ABC_MetN_methionine_tr 93.4 0.054 1.2E-06 53.9 2.7 28 403-430 28-55 (233)
479 PRK05800 cobU adenosylcobinami 93.4 0.16 3.4E-06 48.4 5.8 23 408-430 3-25 (170)
480 cd04119 RJL RJL (RabJ-Like) su 93.4 0.061 1.3E-06 49.6 2.9 22 408-429 2-23 (168)
481 TIGR01618 phage_P_loop phage n 93.4 0.05 1.1E-06 54.0 2.4 22 406-427 12-33 (220)
482 COG4178 ABC-type uncharacteriz 93.3 0.028 6E-07 63.2 0.6 47 382-428 395-441 (604)
483 PRK12726 flagellar biosynthesi 93.3 0.11 2.4E-06 55.6 5.0 41 405-446 205-245 (407)
484 PRK14526 adenylate kinase; Pro 93.3 0.065 1.4E-06 52.9 3.1 23 408-430 2-24 (211)
485 cd03292 ABC_FtsE_transporter F 93.3 0.057 1.2E-06 52.9 2.7 28 403-430 24-51 (214)
486 TIGR01613 primase_Cterm phage/ 93.3 0.51 1.1E-05 49.1 10.0 124 407-553 77-202 (304)
487 PRK15455 PrkA family serine pr 93.3 0.056 1.2E-06 60.4 2.9 49 522-570 296-348 (644)
488 TIGR01166 cbiO cobalt transpor 93.3 0.058 1.3E-06 51.9 2.7 28 403-430 15-42 (190)
489 TIGR00101 ureG urease accessor 93.3 0.11 2.3E-06 50.8 4.6 24 408-431 3-26 (199)
490 PF01583 APS_kinase: Adenylyls 93.3 0.11 2.3E-06 48.8 4.4 34 407-441 3-36 (156)
491 PRK08356 hypothetical protein; 93.3 0.06 1.3E-06 52.2 2.8 21 407-427 6-26 (195)
492 cd04159 Arl10_like Arl10-like 93.2 0.062 1.3E-06 48.7 2.7 21 409-429 2-22 (159)
493 PF00006 ATP-synt_ab: ATP synt 93.2 0.13 2.7E-06 51.0 5.0 133 404-547 13-189 (215)
494 TIGR02315 ABC_phnC phosphonate 93.2 0.058 1.3E-06 54.0 2.7 29 402-430 24-52 (243)
495 cd01870 RhoA_like RhoA-like su 93.2 0.065 1.4E-06 50.2 2.9 23 407-429 2-24 (175)
496 PF00735 Septin: Septin; Inte 93.2 0.056 1.2E-06 55.8 2.6 23 407-429 5-27 (281)
497 KOG0479|consensus 93.2 0.65 1.4E-05 51.7 10.6 148 406-571 334-501 (818)
498 PRK10416 signal recognition pa 93.2 0.13 2.7E-06 54.2 5.2 37 406-443 114-150 (318)
499 cd01861 Rab6 Rab6 subfamily. 93.2 0.066 1.4E-06 49.3 2.8 22 408-429 2-23 (161)
500 cd04163 Era Era subfamily. Er 93.2 0.067 1.5E-06 48.8 2.9 22 407-428 4-25 (168)
No 1
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=1.9e-51 Score=418.48 Aligned_cols=199 Identities=46% Similarity=0.917 Sum_probs=164.4
Q ss_pred cccCCCCCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH
Q psy17974 374 FTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 374 ~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq 453 (583)
++++|+.++++++|||+||+|+.++++.++++++||||+||+|||||++++++++++ +.+.+.+..++||+.|++..+|
T Consensus 1 ~~~~~~~~~~~~~VpT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l-~~~~~~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 1 FEYDPEMPFNEILVPTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSL-DSDKYLVITINFSAQTTSNQLQ 79 (272)
T ss_dssp ------------T---HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCS-TTCCEEEEEEES-TTHHHHHHH
T ss_pred CCcccccccceEEeCcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccC-CccccceeEeeccCCCCHHHHH
Confidence 457888999999999999999999999999999999999999999999999999987 4567788899999999999999
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
+++|+++++++|++|||++||++|+||||+|||.+|+||+|+|+|+|||++|+|||||+++.+|+.++|+++||||+|+
T Consensus 80 ~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~- 158 (272)
T PF12775_consen 80 KIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPT- 158 (272)
T ss_dssp HCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESST-
T ss_pred HHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcccccC
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~l~~ 574 (583)
+||+++++||+|||+++++++|+.++|.+||++++.+||..
T Consensus 159 ~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~ 199 (272)
T PF12775_consen 159 GGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKN 199 (272)
T ss_dssp TT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCH
T ss_pred CCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhccc
Confidence 58899999999999999999999999999999999999863
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=100.00 E-value=2e-41 Score=379.64 Aligned_cols=258 Identities=20% Similarity=0.253 Sum_probs=214.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCCCCCCC-----CCCcceEEEECCCCceeeccccCCccccCC
Q psy17974 304 PLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGK-----DPDLRSYFVSKDTKQLTPWTTITPIFTYDP 378 (583)
Q Consensus 304 ~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~~~~P~-----~~~vfdy~~d~~~~~w~~W~~~~~~~~~~~ 378 (583)
..++......+.|.+.|.-+.++++.|-.++..-+.. .+|+ .-.+.++-++..+..|.+-. .+++..
T Consensus 1393 ~~mk~~I~~vL~~~~~gD~~~es~~rf~~~~~~~~~~----dl~e~sdye~~~i~~f~is~~~~~~~~Ia----g~~l~~ 1464 (3164)
T COG5245 1393 VEMKRGINDVLKLRIFGDKCRESTPRFYLISDGDLIK----DLNERSDYEEMLIMMFNISAVITNNGSIA----GFELRG 1464 (3164)
T ss_pred HHHHHHHHHHHHHHHhcCcccccchhHHHhhhhhhhh----ccchhhhhHHHHHhhcccceEeecccccC----Cceech
Confidence 3466677788889999999999999999988876543 2333 23455566665555555432 233322
Q ss_pred -CCCCc-cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH
Q psy17974 379 -TMPFF-DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 379 -~~~~~-~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
...+. ++++||.||+++..+.+-++...+.+++|||||||||+++...+++ ...+.++.+|||..|+.......+
T Consensus 1465 ~~vm~~~~vVipt~dt~~~~~f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs---~~~~ev~~~Nfs~~t~T~s~ls~L 1541 (3164)
T COG5245 1465 ERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEMLMCPSLRS---ELITEVKYFNFSTCTMTPSKLSVL 1541 (3164)
T ss_pred hhhcccCCeecccccchhHHHHHHHHHhccceEEEECCCCCccchhcchhhhh---hhheeeeEEeeccccCCHHHHHHH
Confidence 23333 7999999999999999999999999999999999999999877764 346889999999999999988899
Q ss_pred Hhhhhhhc--Cc-cccC-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC
Q psy17974 457 EGKLDKRT--KT-LLGA-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP 532 (583)
Q Consensus 457 e~~l~~~~--~~-~~~p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~ 532 (583)
++..++-+ |+ .+.| +.-|.+|+|+|+||||..+.|++|.++-+|||++++.|||.+...+|+.++++.++||||||
T Consensus 1542 er~t~yy~~tg~~~l~PK~~vK~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~ 1621 (3164)
T COG5245 1542 ERETEYYPNTGVVRLYPKPVVKDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPG 1621 (3164)
T ss_pred HhhceeeccCCeEEEccCcchhheEEEeeccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCC
Confidence 98887643 32 2345 35678999999999999999999999999999999999999988999999999999999999
Q ss_pred C-CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 533 G-GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 533 ~-~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
+ .||.+.+.||+||-..+++++|+..+|.+||..++.+-+
T Consensus 1622 td~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~ 1662 (3164)
T COG5245 1622 TDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSY 1662 (3164)
T ss_pred CCcccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHHHH
Confidence 8 599999999999999999999999999999999988654
No 3
>KOG3595|consensus
Probab=100.00 E-value=8.6e-39 Score=386.09 Aligned_cols=254 Identities=43% Similarity=0.783 Sum_probs=238.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCCCCCCCCCCcceEEEECCCCceeeccccCCccccCCCCCC
Q psy17974 303 GPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVSKDTKQLTPWTTITPIFTYDPTMPF 382 (583)
Q Consensus 303 ~~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~~~~P~~~~vfdy~~d~~~~~w~~W~~~~~~~~~~~~~~~ 382 (583)
..+++..|+||++|++||.++.+.|.+|..|++..+. ++++||++...+.|.+|.++++ +...+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 104 (1395)
T KOG3595|consen 38 KSHLERLFLFALIWALGGDLDADSREKFREFLRRLIN-----------IIDLYYIDEEIGDWEPWIDKVP-FELLEDHE- 104 (1395)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHh-----------hhhheeeeeccccccchhhhCc-cccccccc-
Confidence 5678899999999999999999999999999999875 5778999999999999999999 76666555
Q ss_pred ccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 383 FDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 383 ~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
+++|||.||+|+.+++..++..+++++++||+|+|||.++...+....+.+.+. +|||..|+++.+|.++++++++
T Consensus 105 -~~~v~t~dt~r~~~~~~~~~~~~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~---~~fs~~ts~~~~q~~~~~~~~k 180 (1395)
T KOG3595|consen 105 -DILVPTIDTVRYDRLLKLLLAHGKPVLLVGPTGTGKTVLVLSELRSLQDREVYL---LNFSSVTSSELLQEIIESKLDK 180 (1395)
T ss_pred -ceecCccceeeHHHHHHHHHHhCCeEEEEcCCCCCeeeehHHHHHhcccchheE---EeeeeeccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888763332222 9999999999999999999999
Q ss_pred hcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChh
Q psy17974 463 RTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPR 542 (583)
Q Consensus 463 ~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~R 542 (583)
++++.|||+.++.+++||||+|||..|.||+|++++++||++|++||||+.+..|+.+.|+++++||+||++||+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~f~ddinmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r 260 (1395)
T KOG3595|consen 181 RRSGNYGPPLGKKLVLFVDDINMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITER 260 (1395)
T ss_pred hcccCCCCCCCceeEEEEeccCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceEEEeCCCCHHHHHHHHHHHhccccc
Q psy17974 543 FVRHFGLLSLPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 543 llr~f~vi~i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
|+|||.+++++.|+.+++.+||+.++.+|+.
T Consensus 261 ~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~ 291 (1395)
T KOG3595|consen 261 FLRHFLIVSLNYPSQESLTQIFNTILTGHLR 291 (1395)
T ss_pred HHHHeeeEeeCCCChhhHHHHHHHHHhcccC
Confidence 9999999999999999999999999999977
No 4
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=3e-36 Score=299.15 Aligned_cols=105 Identities=70% Similarity=1.184 Sum_probs=85.4
Q ss_pred eeeeecccccEEEEecCCCCCCCCCchHHHhcccceeeecCCcchhHHHHhhcccccchHHHHHHHHHHHHHHHhhCCCC
Q psy17974 137 QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQ 216 (583)
Q Consensus 137 ~~I~L~~~~~ifiTmnp~y~gr~eLP~nlk~lfr~~~m~~pd~~~I~e~~l~~~gf~~a~~l~~k~~~~~~~~~~~ls~q 216 (583)
++|++++++++||||||||+||++||+|||++||||+|++||+++|+|++|++.||++|+.||+|++.+|++|+++||+|
T Consensus 127 ~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~~l~~l~~~~lS~q 206 (231)
T PF12774_consen 127 QEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLVSLFQLCKEQLSKQ 206 (231)
T ss_dssp CEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHHHHHHHCCCTSSHHHHHHHHHHHHHHHHHCS-SS
T ss_pred CEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhhhhhhCC
Q psy17974 217 DHYDFGMRAVKSVLVMAGSLKRANP 241 (583)
Q Consensus 217 ~hydfglR~lk~vl~~a~~~~~~~~ 241 (583)
+|||||||++|+||.+||.+||.+|
T Consensus 207 ~hydfgLRalk~vl~~a~~~kr~~p 231 (231)
T PF12774_consen 207 DHYDFGLRALKSVLRMAGSLKRGDP 231 (231)
T ss_dssp TT---SHHHHHHHHHHHHHHHT---
T ss_pred ccccccHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999875
No 5
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.87 E-value=6.7e-23 Score=221.50 Aligned_cols=101 Identities=47% Similarity=0.859 Sum_probs=92.6
Q ss_pred CcccccCcceeeeccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEecCchHHHHHHhcCCCCcchhcchhhhc
Q psy17974 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPHLGKCF 80 (583)
Q Consensus 1 m~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~l~~yLe~kR~~FpRf~Fls~~ell~il~~~~~~~~i~~~l~k~f 80 (583)
|+++.++|+|+++|..+++.+.|+.+++.|+.|+|+|++|||+||..|||||||||+|||+|||+++||..+|+|++|||
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~L~~~Le~kR~~FPRfyFlsd~eLl~ils~~~~~~~i~~~l~k~F 343 (408)
T PF08393_consen 264 MKRAQKDPNVLSVCSNPDLLEKLESINESLEKIQKSLNDYLESKREAFPRFYFLSDDELLEILSQSKDPEQIQPHLKKCF 343 (408)
T ss_dssp HHHHHCT-CCHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHC-HHHHHHHHHTTTTCHHHHHHHHHCC
T ss_pred HHHHHhCcchhHHhhHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccceeecCcHHHHHHHHcCCChHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCc----------------------------CccHHHHHH----HHHHhH
Q psy17974 81 DGIAGW----------------------------TPYVKSWLN----LLFDKV 101 (583)
Q Consensus 81 ~~i~~~----------------------------~~~ve~WL~----~m~~tl 101 (583)
+||+++ +|.||.||+ +|+.||
T Consensus 344 ~~i~~l~~~~~~~~i~~~~s~~gE~~~l~~~v~~~~~ve~WL~~le~~m~~tl 396 (408)
T PF08393_consen 344 PGIKSLEFDENNNSITGMISAEGETLPLDKPVSIEGPVEEWLNELEEEMKSTL 396 (408)
T ss_dssp SSEEEEEE-TTSSEEEEEEETTS-EEEEEEEEESSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhhhcCCCCCeEEeCCcccCCCcHHHHHHHHHHHHHHHH
Confidence 999932 889999999 777665
No 6
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.73 E-value=3.4e-16 Score=179.14 Aligned_cols=348 Identities=21% Similarity=0.294 Sum_probs=209.0
Q ss_pred eeeeecccccEEEEecCC-CCCCCCCchHHHhcccceee----ecCCcchhHHHHhhcccccchHHHHHHHHHHHHHHHh
Q psy17974 137 QMINLVPSCAAFITMNPG-YAGRTELPDNLKALFRPMAM----MVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSE 211 (583)
Q Consensus 137 ~~I~L~~~~~ifiTmnp~-y~gr~eLP~nlk~lfr~~~m----~~pd~~~I~e~~l~~~gf~~a~~l~~k~~~~~~~~~~ 211 (583)
.++.-+.++.+|.||||| ..|+.||.+.|+..|.++++ --.|...|+++.|. . +-..||+.++..++....
T Consensus 1333 ~~vtA~dgF~ffATMNPGGDyGKkELSPALRNRFTEiwvp~m~D~~d~~~iv~~~l~-~---~~vdla~p~ve~~kw~a~ 1408 (4600)
T COG5271 1333 EEVTAHDGFRFFATMNPGGDYGKKELSPALRNRFTEIWVPVMSDEADLIFIVLVDLR-F---GEVDLAKPSVETFKWLAR 1408 (4600)
T ss_pred ceeeeccCceEEEeeCCCCccchhhCCHHHhcccceEeecccccccchhhhhhhhhh-c---CcccccchHHHHHHHHHH
Confidence 567788999999999996 77999999999999998886 23456666666665 2 356799999999987655
Q ss_pred hCCCCcccc--ccchhHHHHHHHhhhhhhhCCCCchHHHHHHHHHhcCCCcccccccccccchhhhHHHHHHHHHHccCC
Q psy17974 212 QLSQQDHYD--FGMRAVKSVLVMAGSLKRANPDKNEDVVLIRALRDSNLPKFLADDAGLFLVDVSKARMICSLMESTLIE 289 (583)
Q Consensus 212 ~ls~q~hyd--fglR~lk~vl~~a~~~~~~~~~~~E~~i~l~al~d~~lPKl~~~D~~lF~~~~~~v~s~~~ll~~ll~~ 289 (583)
.+ -|. .++|.+.++..-....+.. |. ...|| |-+ ++ -.+|+|-..
T Consensus 1409 ~l----~~~~vISiRd~l~~VEFIn~~~i~---------------d~--------~~~l~----~~~-sm-vfidalG~f 1455 (4600)
T COG5271 1409 SL----LYNDVISIRDLLLIVEFINRREIL---------------DL--------NLVLF----NAV-SM-VFIDALGEF 1455 (4600)
T ss_pred Hh----hccCceeHHHHHHHHHHHHHHHhh---------------hh--------hhHhh----hhh-hH-HHHHHhccc
Confidence 54 343 4677776665322221111 11 11111 000 10 112333210
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCCCCCCCCCCcceEEEECC---CCcee-
Q psy17974 290 PGMLDRSHNSENTGPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVSKD---TKQLT- 365 (583)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~~~~P~~~~vfdy~~d~~---~~~w~- 365 (583)
. +..-.-+... ++..=.-|++|-. .+-+. ++..-. ..+-..|+..+ .|.|.
T Consensus 1456 s-t~~laen~~d----l~s~r~~c~v~l~-----------------~L~g~--~i~~~~-~~~n~i~f~d~~~f~g~f~i 1510 (4600)
T COG5271 1456 S-TVALAENGLD----LESERQRCFVWLE-----------------ALEGA--GIKGIE-ADVNAIYFEDERMFGGDFVI 1510 (4600)
T ss_pred c-hhHHhhcccc----hhHHHHHHHHHHH-----------------HhccC--Cceeee-cccceeEecccceecccccc
Confidence 0 0000000011 1122223334421 11111 000000 00111122111 11111
Q ss_pred eccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 366 PWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 366 ~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
|.-..+. ...+ .+.--|| |.-+..-+-..++.++|+||-|.||+|||+++.++++.. +...++||.|.
T Consensus 1511 P~~~~~~-----S~Ss-f~l~spT--T~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~t----G~kliRINLSe 1578 (4600)
T COG5271 1511 PYLVEHH-----SSSS-FDLESPT--TTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKT----GKKLIRINLSE 1578 (4600)
T ss_pred ccccccc-----cCcc-ccccCCc--hHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHh----cCceEEeeccc
Confidence 1111110 0111 1222233 333333344567789999999999999999999999976 44688999999
Q ss_pred CCChHHHHHHHHhhhhhhcCcccc---C------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe-eecC-C
Q psy17974 446 QTSSARTQEILEGKLDKRTKTLLG---A------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL-YDRD-K 514 (583)
Q Consensus 446 ~Tt~~~lq~~ie~~l~~~~~~~~~---p------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~-~ 514 (583)
||.--+ ++.+.+---++|-|. + ..|.| +.+||+|++ +|+++|-|...+||.+= |-++ +
T Consensus 1579 QTdL~D---LfGsd~Pve~~Gef~w~dapfL~amr~G~W--VlLDEiNLa------SQSVlEGLNacLDhR~eayIPEld 1647 (4600)
T COG5271 1579 QTDLCD---LFGSDLPVEEGGEFRWMDAPFLHAMRDGGW--VLLDEINLA------SQSVLEGLNACLDHRREAYIPELD 1647 (4600)
T ss_pred cchHHH---HhCCCCCcccCceeEecccHHHHHhhcCCE--EEeehhhhh------HHHHHHHHHHHHhhcccccccccc
Confidence 997444 444444322444432 1 24444 568999996 58999999999999763 5444 4
Q ss_pred CeeEeecCeEEEEecCCC--CCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 515 MFWKTLQDVVLCTACAPP--GGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 515 ~~~~~i~~i~~iaa~~p~--~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
..+..-.|+.+.||.||. ||||+-+|..|+.||+|+.++..+.+++..|-...+.
T Consensus 1648 ~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1648 KTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhCC
Confidence 477777899999999996 5899999999999999999999999999999887765
No 7
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.66 E-value=7.4e-15 Score=168.44 Aligned_cols=346 Identities=21% Similarity=0.256 Sum_probs=221.9
Q ss_pred eeeeecccccEEEEecCC-CCCCCCCchHHHhcccceeeecCCcch-----hHHHHhhcccccchHHHHHHHHHHHHHHH
Q psy17974 137 QMINLVPSCAAFITMNPG-YAGRTELPDNLKALFRPMAMMVPDYGL-----IAEVVLYSEGFESSKNLAQKMVNMYKLCS 210 (583)
Q Consensus 137 ~~I~L~~~~~ifiTmnp~-y~gr~eLP~nlk~lfr~~~m~~pd~~~-----I~e~~l~~~gf~~a~~l~~k~~~~~~~~~ 210 (583)
+.|+.+|++.+|-.|||| ..|+.+||..+++-|..+-+-.|+.++ |+.-.+-+..- ...-.+++|..+|..++
T Consensus 675 ~Pi~~Hp~FrlFgCMNP~tDvGKr~le~~~rsrFteIyVhsp~~~l~DllsII~kyig~y~I-s~E~v~~~IaElyleaK 753 (4600)
T COG5271 675 RPIRIHPGFRLFGCMNPGTDVGKRKLEGSFRSRFTEIYVHSPSTSLKDLLSIIHKYIGRYEI-SEERVSRKIAELYLEAK 753 (4600)
T ss_pred cccccCCCceEEeecCCCcccccccCCcccccceeEEEEeCccccHHHHHHHHHHHHhheec-chHHHhHHHHHHHHHHH
Confidence 678999999999999996 779999999999999999998887654 44444422222 24456789999997665
Q ss_pred hhC-----CC--CccccccchhHHHHHHHhhhhhhhCCCCchHHHHHHHHHhcCCCcccccccccccchhhhHHHHHHHH
Q psy17974 211 EQL-----SQ--QDHYDFGMRAVKSVLVMAGSLKRANPDKNEDVVLIRALRDSNLPKFLADDAGLFLVDVSKARMICSLM 283 (583)
Q Consensus 211 ~~l-----s~--q~hydfglR~lk~vl~~a~~~~~~~~~~~E~~i~l~al~d~~lPKl~~~D~~lF~~~~~~v~s~~~ll 283 (583)
..- .. .....|.-|++..+|.+-.+. .|..=+-||+. -.+|.-|
T Consensus 754 slsl~~~lvdga~q~Ph~s~RTL~RtL~yVt~i-------~~iyglrrSlY----------------------egFcmsf 804 (4600)
T COG5271 754 SLSLGKELVDGAVQEPHVSGRTLVRTLNYVTNI-------GEIYGLRRSLY----------------------EGFCMSF 804 (4600)
T ss_pred HhccCCeeccCcCCCcccchHhHHHHHHHHhhh-------hHHHHHHHHHH----------------------HHHHHHH
Confidence 432 11 223345678888777544321 12111222221 2233322
Q ss_pred HHccCCCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCCCCCCCCCCcceEEEECCCCc
Q psy17974 284 ESTLIEPGMLDRSHNSENTGPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVSKDTKQ 363 (583)
Q Consensus 284 ~~ll~~~~~~~~~~~~~~~~~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~~~~P~~~~vfdy~~d~~~~~ 363 (583)
-+++...+ +.-...++.+.++ |-+.. . ....+. ..+.|.. +| + .
T Consensus 805 lTlLD~~S-------esil~~~~~kftl--------g~l~~-~--------~ai~kq--~p~~p~~----~y-i-----~ 848 (4600)
T COG5271 805 LTLLDFVS-------ESILVSLLSKFTL--------GLLES-Q--------NAIEKQ--KPKVPDH----SY-I-----A 848 (4600)
T ss_pred HHHHHhhH-------HHHHHHHHHHHHh--------ccccc-c--------hhhhhc--CCCCCCc----cH-H-----H
Confidence 23332111 0111122222221 22221 1 011111 1223321 11 1 1
Q ss_pred eee-ccccCCccccCCCCCCccceeeCchhhh-HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 364 LTP-WTTITPIFTYDPTMPFFDMMVPTIDTIR-FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 364 w~~-W~~~~~~~~~~~~~~~~~i~VpT~dt~r-~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
|.+ |...-+ +.+. -...+|-||-..+ +..+++.....+.|+|+-||+.||||+.+..+++.. +..+++|
T Consensus 849 f~hyw~~~g~-~~ve----eq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~t----ghkfVRI 919 (4600)
T COG5271 849 FCHYWKHGGS-FPVE----EQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARET----GHKFVRI 919 (4600)
T ss_pred HHHHHHhcCC-Cchh----hcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHh----CccEEEe
Confidence 111 222111 1111 1345777777666 678888888899999999999999999999999875 5578999
Q ss_pred EeccCCChHHHHHHHHhhhhhhcC------ccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHh-CCeeecCC
Q psy17974 442 NFSAQTSSARTQEILEGKLDKRTK------TLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDF-GGLYDRDK 514 (583)
Q Consensus 442 ~fS~~Tt~~~lq~~ie~~l~~~~~------~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~-~g~yd~~~ 514 (583)
|-..+|. +|+.|...+....| |++.....+...+.+||+|++..| ++|.|..++|. ...|-+++
T Consensus 920 NNHEHTd---lqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTD------VLEaLNRLLDDNRelfIPET 990 (4600)
T COG5271 920 NNHEHTD---LQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTD------VLEALNRLLDDNRELFIPET 990 (4600)
T ss_pred cCcccch---HHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHH------HHHHHHHhhccccceecCCc
Confidence 9999885 67777766544332 333222222233568999999887 89999888865 46788888
Q ss_pred CeeEee-cCeEEEEecCCCC--CCCCCCChhhhccceEEEeCCCCHHHHHHHHHH
Q psy17974 515 MFWKTL-QDVVLCTACAPPG--GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 515 ~~~~~i-~~i~~iaa~~p~~--~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
.+.+.. .++.+.||.|||| |||+.++.+|..||--++++...+++|..|...
T Consensus 991 qevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 991 QEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred ceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhc
Confidence 877655 5899999999998 799999999999999999999999999988764
No 8
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.57 E-value=3.8e-15 Score=136.67 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=89.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh--hhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK--LDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~--l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
||||+||||||||++++.+++.+ ......+++++.|+..++.....-. -.+...+.+.....+..++++||+|.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCccc
Confidence 79999999999999999999987 4567889999999998876432211 01111122222234678999999999
Q ss_pred CCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeec-------CeEEEEecCCCCCCCCCCChhhhccc
Q psy17974 486 PKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQ-------DVVLCTACAPPGGGRMPLTPRFVRHF 547 (583)
Q Consensus 486 p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~-------~i~~iaa~~p~~~gr~~l~~Rllr~f 547 (583)
+.++ +++.|.++++.+.+.......-.... ++.+||||||.+.++..++++|++||
T Consensus 77 a~~~------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 APPE------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --HH------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCHH------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 8755 78889999998877644333323233 49999999999888999999999998
No 9
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.55 E-value=4.4e-14 Score=143.87 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=124.4
Q ss_pred eeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH--------
Q psy17974 386 MVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE-------- 457 (583)
Q Consensus 386 ~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie-------- 457 (583)
||+|+...+...-+..++..+.|+||.||||||||++++.+++.+ +..+..++++..+++.++.....
T Consensus 1 ~~~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 1 FIETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 477777777777778888899999999999999999999998865 45678899998887766533211
Q ss_pred -hh---hhhhc---Cccc--cCC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCC---CeeEee-c
Q psy17974 458 -GK---LDKRT---KTLL--GAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDK---MFWKTL-Q 521 (583)
Q Consensus 458 -~~---l~~~~---~~~~--~p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~---~~~~~i-~ 521 (583)
.. +.+.. +..| ||- ..+..++++||+|...++ ....|-.+++.+.+.-... .+.+.+ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~ 150 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPE------TNNVLLSVFEEGVLELPGKRGTSRYVDVHP 150 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHH------HHHHHHHHhcCCeEEccCCCCCCceEecCC
Confidence 00 00000 0011 221 122358899999997766 4566777888765443221 233322 5
Q ss_pred CeEEEEecCCCC-CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHh
Q psy17974 522 DVVLCTACAPPG-GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 522 ~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l 568 (583)
++.+|+|+||+. .|...+++.|.++|..+.+++|+.++...|.....
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh
Confidence 899999999975 68888999999999999999999999999988753
No 10
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.53 E-value=5.9e-14 Score=145.09 Aligned_cols=171 Identities=16% Similarity=0.224 Sum_probs=126.0
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh-h
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK-R 463 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~-~ 463 (583)
-++..+++.+. +...+..++++||.||||||||++++.++..+ ++..+.++++..+++.++.+.-.-.++. .
T Consensus 46 ~y~f~~~~~~~---vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l----~~~~~rV~~~~~l~~~DliG~~~~~l~~g~ 118 (327)
T TIGR01650 46 AYLFDKATTKA---ICAGFAYDRRVMVQGYHGTGKSTHIEQIAARL----NWPCVRVNLDSHVSRIDLVGKDAIVLKDGK 118 (327)
T ss_pred CccCCHHHHHH---HHHHHhcCCcEEEEeCCCChHHHHHHHHHHHH----CCCeEEEEecCCCChhhcCCCceeeccCCc
Confidence 47777777653 44555678999999999999999999999988 4678899999999887755421001111 0
Q ss_pred cCccc--cCC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeee-cCCCeeEeec-CeEEEEecCCCC---
Q psy17974 464 TKTLL--GAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYD-RDKMFWKTLQ-DVVLCTACAPPG--- 533 (583)
Q Consensus 464 ~~~~~--~p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd-~~~~~~~~i~-~i~~iaa~~p~~--- 533 (583)
....| ||- ..+.+++++||+|...++ +...|..++|++|... .+..+....+ ++.++||+||.+
T Consensus 119 ~~~~f~~GpL~~A~~~g~illlDEin~a~p~------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd 192 (327)
T TIGR01650 119 QITEFRDGILPWALQHNVALCFDEYDAGRPD------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGD 192 (327)
T ss_pred ceeEEecCcchhHHhCCeEEEechhhccCHH------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCC
Confidence 00122 331 245678999999998766 5778888999776553 3444555454 899999999965
Q ss_pred -----CCCCCCChhhhccceE-EEeCCCCHHHHHHHHHHHh
Q psy17974 534 -----GGRMPLTPRFVRHFGL-LSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 534 -----~gr~~l~~Rllr~f~v-i~i~~p~~~sl~~I~~~~l 568 (583)
.|.+.+++.++.||.+ +.++||+.++-..|.....
T Consensus 193 ~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 193 TTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 3788999999999985 6899999999999987654
No 11
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.7e-13 Score=136.35 Aligned_cols=148 Identities=22% Similarity=0.348 Sum_probs=105.7
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEE
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAV 478 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vl 478 (583)
+.-+..-+.|||+||||||||++++++++.- +..++.+ ..++-+|+.|... .+-.+..|. +....++|+
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----~AtFIrv-----vgSElVqKYiGEG-aRlVRelF~lArekaPsII 248 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----DATFIRV-----VGSELVQKYIGEG-ARLVRELFELAREKAPSII 248 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----CceEEEe-----ccHHHHHHHhccc-hHHHHHHHHHHhhcCCeEE
Confidence 3346667899999999999999999999864 2334444 3456777776321 111123343 345678999
Q ss_pred EecCCCCCCcccCCCCC---------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc
Q psy17974 479 FVDDVNMPKLETYGAQP---------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF 547 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~---------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f 547 (583)
|||||+.-....+.++. .+|||.|+ .||-. ..|+.+|+|+|.+. .|+|+++| ||
T Consensus 249 FiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql---DGFD~--------~~nvKVI~ATNR~D----~LDPALLRPGR~ 313 (406)
T COG1222 249 FIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL---DGFDP--------RGNVKVIMATNRPD----ILDPALLRPGRF 313 (406)
T ss_pred EEechhhhhcccccCCCCchHHHHHHHHHHHHhc---cCCCC--------CCCeEEEEecCCcc----ccChhhcCCCcc
Confidence 99999987655543322 46676665 35432 35899999999986 79999999 55
Q ss_pred -eEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 548 -GLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 548 -~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
+.|-+|.|+.+.-..||..+-+.+-
T Consensus 314 DRkIEfplPd~~gR~~Il~IHtrkM~ 339 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKIHTRKMN 339 (406)
T ss_pred cceeecCCCCHHHHHHHHHHHhhhcc
Confidence 4799999999999999999876553
No 12
>PHA02244 ATPase-like protein
Probab=99.36 E-value=4.9e-12 Score=132.31 Aligned_cols=147 Identities=16% Similarity=0.214 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc--C--
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG--A-- 470 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~--p-- 470 (583)
....+..++..+.||||.||||||||+++++++..+ +..++.++ ..++...+...+ ...+.+. |
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----g~pfv~In--~l~d~~~L~G~i------~~~g~~~dgpLl 175 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----DLDFYFMN--AIMDEFELKGFI------DANGKFHETPFY 175 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEEe--cChHHHhhcccc------cccccccchHHH
Confidence 334557789999999999999999999999998876 23444554 222211111111 1112222 1
Q ss_pred -CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-C------CCCCCChh
Q psy17974 471 -PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-G------GRMPLTPR 542 (583)
Q Consensus 471 -~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~------gr~~l~~R 542 (583)
...+..++++||+|...++ +...|..+++++ .++........-.++++|||+||++ | |++.+++.
T Consensus 176 ~A~~~GgvLiLDEId~a~p~------vq~~L~~lLd~r-~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~A 248 (383)
T PHA02244 176 EAFKKGGLFFIDEIDASIPE------ALIIINSAIANK-FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGA 248 (383)
T ss_pred HHhhcCCEEEEeCcCcCCHH------HHHHHHHHhccC-eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHH
Confidence 1223458999999988766 567788888865 5665544444447899999999975 2 68999999
Q ss_pred hhccceEEEeCCCCHHHH
Q psy17974 543 FVRHFGLLSLPSPTEDTL 560 (583)
Q Consensus 543 llr~f~vi~i~~p~~~sl 560 (583)
++.||.++.+++|++.+.
T Consensus 249 llDRFv~I~~dyp~~~E~ 266 (383)
T PHA02244 249 TLDRFAPIEFDYDEKIEH 266 (383)
T ss_pred HHhhcEEeeCCCCcHHHH
Confidence 999999999999985444
No 13
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.32 E-value=2.5e-11 Score=127.74 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=114.5
Q ss_pred eeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh--h
Q psy17974 386 MVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK--R 463 (583)
Q Consensus 386 ~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~--~ 463 (583)
++...++ ...+...+..+.|+||.||||||||++++.++..+ +.....++|++.+++.++.....-.... .
T Consensus 26 ~~g~~~~---~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l----~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~ 98 (329)
T COG0714 26 VVGDEEV---IELALLALLAGGHVLLEGPPGVGKTLLARALARAL----GLPFVRIQCTPDLLPSDLLGTYAYAALLLEP 98 (329)
T ss_pred eeccHHH---HHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHh----CCCeEEEecCCCCCHHHhcCchhHhhhhccC
Confidence 5553333 34556677789999999999999999999999987 3678899999999999877543322221 1
Q ss_pred cCccc--cCC-CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCC
Q psy17974 464 TKTLL--GAP-LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPL 539 (583)
Q Consensus 464 ~~~~~--~p~-~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l 539 (583)
....| ||- .+-+.++|+||||.+.++ ....|-+.++.+..+........--..+.++||.||.. .|..++
T Consensus 99 ~~~~~~~gpl~~~~~~ill~DEInra~p~------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l 172 (329)
T COG0714 99 GEFRFVPGPLFAAVRVILLLDEINRAPPE------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPL 172 (329)
T ss_pred CeEEEecCCcccccceEEEEeccccCCHH------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCC
Confidence 11122 221 111259999999998776 34445566665555443322233345688888889754 688999
Q ss_pred Chhhhccc-eEEEeCCCCHHHHHHHHHH
Q psy17974 540 TPRFVRHF-GLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 540 ~~Rllr~f-~vi~i~~p~~~sl~~I~~~ 566 (583)
+..+++|| -.+++++|..+....+...
T Consensus 173 ~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 173 PEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred CHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 99999999 7899999955544444333
No 14
>KOG0733|consensus
Probab=99.30 E-value=1.8e-11 Score=132.13 Aligned_cols=146 Identities=22% Similarity=0.402 Sum_probs=106.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+..-..|||+||||||||.++++++++- + +||=+.-.++.+-+. -+.-++..+.+|. +....+||||+|
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEa----g-----~NFisVKGPELlNkY-VGESErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEA----G-----ANFISVKGPELLNKY-VGESERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhc----c-----CceEeecCHHHHHHH-hhhHHHHHHHHHHHhhcCCCeEEEec
Confidence 4456789999999999999999999863 2 333333445444333 2333333444553 456789999999
Q ss_pred CCCC--CCcccCCCCChHHHHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCC
Q psy17974 482 DVNM--PKLETYGAQPPIELLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSP 555 (583)
Q Consensus 482 Dln~--p~~d~yg~q~~lElLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p 555 (583)
|++. |..+..|+...--++.|++ |..|.-++ .++.+|||+|.|. -|+|.++| || .+++++.|
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R--------~gV~viaATNRPD----iIDpAiLRPGRlDk~LyV~lP 679 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER--------RGVYVIAATNRPD----IIDPAILRPGRLDKLLYVGLP 679 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccccc--------cceEEEeecCCCc----ccchhhcCCCccCceeeecCC
Confidence 9996 5555566666667788877 44555443 4688999999997 79999998 55 48999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy17974 556 TEDTLKVIFKVRTSP 570 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~ 570 (583)
+.++-..|..++.+.
T Consensus 680 n~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 680 NAEERVAILKTITKN 694 (802)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999999885
No 15
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.25 E-value=3e-11 Score=129.59 Aligned_cols=148 Identities=16% Similarity=0.254 Sum_probs=98.6
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhhcccCC-ceEEEEEeccCCChHHHHHHHH-hhhhh-hcCccc-----cC--C
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKLLASNT-WAALTINFSAQTSSARTQEILE-GKLDK-RTKTLL-----GA--P 471 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~-~~~~~i~fS~~Tt~~~lq~~ie-~~l~~-~~~~~~-----~p--~ 471 (583)
.+..+++++|+||||||||++++.++..+..... ..+..+.|+...+..++..-+. ..... ...|.| .+ .
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc
Confidence 3447899999999999999999998887632211 2344577777666555432110 00110 111221 01 1
Q ss_pred CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhC--C-------eeecCC-CeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 472 LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG--G-------LYDRDK-MFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~--g-------~yd~~~-~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
++++.+++|||+|++..++ +..-+++++|++ | .|+..+ ..+....|+.+|||||....+-..++.
T Consensus 270 p~~~~vliIDEINRani~k-----iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~ 344 (459)
T PRK11331 270 PEKKYVFIIDEINRANLSK-----VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY 344 (459)
T ss_pred ccCCcEEEEehhhccCHHH-----hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccH
Confidence 3467899999999999876 233346777764 2 233222 346667899999999998766668999
Q ss_pred hhhccceEEEeCC
Q psy17974 542 RFVRHFGLLSLPS 554 (583)
Q Consensus 542 Rllr~f~vi~i~~ 554 (583)
+|.|||..+.+.+
T Consensus 345 AlrRRF~fi~i~p 357 (459)
T PRK11331 345 ALRRRFSFIDIEP 357 (459)
T ss_pred HHHhhhheEEecC
Confidence 9999999998876
No 16
>KOG0734|consensus
Probab=99.23 E-value=1.4e-11 Score=131.16 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=104.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC-CCCCeEEEEecCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA-PLGKRLAVFVDDVNM 485 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p-~~gk~~vlfiDDln~ 485 (583)
+.|||+||||||||+++++++.+- +..+ +.. +.+.+.+++-+-=.+|.+..|.. ....+||||||||+.
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA----~VPF--F~~----sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEA----GVPF--FYA----SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhccc----CCCe--Eec----cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 689999999999999999998753 2222 222 23455666555445566666754 356699999999997
Q ss_pred CCccc--CCCCChHHHHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCCCCHHH
Q psy17974 486 PKLET--YGAQPPIELLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPSPTEDT 559 (583)
Q Consensus 486 p~~d~--yg~q~~lElLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~p~~~s 559 (583)
-.... ...+-.-..|.|++ |..||-. -+.|.+|||+|-|. .+++.|+| ||- .|.+|.|+-.-
T Consensus 408 vG~kR~~~~~~y~kqTlNQLLvEmDGF~q--------NeGiIvigATNfpe----~LD~AL~RPGRFD~~v~Vp~PDv~G 475 (752)
T KOG0734|consen 408 VGGKRNPSDQHYAKQTLNQLLVEMDGFKQ--------NEGIIVIGATNFPE----ALDKALTRPGRFDRHVTVPLPDVRG 475 (752)
T ss_pred hcccCCccHHHHHHHHHHHHHHHhcCcCc--------CCceEEEeccCChh----hhhHHhcCCCccceeEecCCCCccc
Confidence 54322 11112345566665 5566632 35899999999987 78888888 674 69999999999
Q ss_pred HHHHHHHHhcccccC
Q psy17974 560 LKVIFKVRTSPGKQE 574 (583)
Q Consensus 560 l~~I~~~~l~~~l~~ 574 (583)
...|+..++......
T Consensus 476 R~eIL~~yl~ki~~~ 490 (752)
T KOG0734|consen 476 RTEILKLYLSKIPLD 490 (752)
T ss_pred HHHHHHHHHhcCCcc
Confidence 999999999877644
No 17
>KOG1808|consensus
Probab=99.21 E-value=1e-10 Score=141.01 Aligned_cols=170 Identities=20% Similarity=0.269 Sum_probs=132.4
Q ss_pred cceeeCchhhhHHHHHHHHHhcC-CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVN-HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~-~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
..+|+|+...++..-+......| .|+||.||+|||||++++.+++.. ++..+.||-...|+ +|+.|.++...
T Consensus 417 ~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~----g~~~vrinnhehtd---~qeyig~y~~~ 489 (1856)
T KOG1808|consen 417 THYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARAT----GKNIVRINNHEHTD---LQEYIGTYVAD 489 (1856)
T ss_pred ceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHh----ccCceehhccccch---HHHHHHhhhcC
Confidence 35899999998887777777766 799999999999999999999976 45678888888775 56666655543
Q ss_pred hcCcc-c-----cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHh-CCeeecCCCeeEee-cCeEEEEecCCCC-
Q psy17974 463 RTKTL-L-----GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDF-GGLYDRDKMFWKTL-QDVVLCTACAPPG- 533 (583)
Q Consensus 463 ~~~~~-~-----~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~-~g~yd~~~~~~~~i-~~i~~iaa~~p~~- 533 (583)
..++. + .....+-..+++|+||++..| ++|.|.+++|. .+.|-+++.+.+.. .+..+.|+-||++
T Consensus 490 ~~g~l~freg~LV~Alr~G~~~vlD~lnla~~d------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~ 563 (1856)
T KOG1808|consen 490 DNGDLVFREGVLVQALRNGDWIVLDELNLAPHD------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGT 563 (1856)
T ss_pred CCCCeeeehhHHHHHHHhCCEEEeccccccchH------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccc
Confidence 33321 1 112222345689999999877 79999998887 78988887765544 4688889999996
Q ss_pred -CCCCCCChhhhccceEEEeCCCCHHHHHHHHHH
Q psy17974 534 -GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 534 -~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
+||..++..|..+|..+++....++.+..|+..
T Consensus 564 y~grk~lsRa~~~rf~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 564 YGGRKILSRALRNRFIELHFDDIGEEELEEILEH 597 (1856)
T ss_pred cchhhhhhhcccccchhhhhhhcCchhhhhhhcc
Confidence 799999999999999999998888887777653
No 18
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.19 E-value=2.7e-10 Score=111.43 Aligned_cols=131 Identities=24% Similarity=0.282 Sum_probs=83.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc--CCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA--QTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~--~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
++||+||||+|||++++-+++++. .... .+|+ -..+.++...+.+ + +++-|+||||||.
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~----~~~~--~~sg~~i~k~~dl~~il~~-l------------~~~~ILFIDEIHR 112 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG----VNFK--ITSGPAIEKAGDLAAILTN-L------------KEGDILFIDEIHR 112 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT------EE--EEECCC--SCHHHHHHHHT---------------TT-EEEECTCCC
T ss_pred eEEEECCCccchhHHHHHHHhccC----CCeE--eccchhhhhHHHHHHHHHh-c------------CCCcEEEEechhh
Confidence 799999999999999999999872 2222 2343 2334555554322 2 1345999999998
Q ss_pred CCcccCCCCChHHHHHHHHHhCCeee--cCC--C--eeEeecCeEEEEecCCCCCCCCCCChhhhccceEE-EeCCCCHH
Q psy17974 486 PKLETYGAQPPIELLRQFLDFGGLYD--RDK--M--FWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLL-SLPSPTED 558 (583)
Q Consensus 486 p~~d~yg~q~~lElLRq~ld~~g~yd--~~~--~--~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi-~i~~p~~~ 558 (583)
-.+. .-|.|=..+|.+...- ... . --..+..+++|||++..| .+++.|..+|-++ .+++.+.+
T Consensus 113 lnk~------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g----~ls~pLrdRFgi~~~l~~Y~~~ 182 (233)
T PF05496_consen 113 LNKA------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG----LLSSPLRDRFGIVLRLEFYSEE 182 (233)
T ss_dssp --HH------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC----CTSHCCCTTSSEEEE----THH
T ss_pred ccHH------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc----ccchhHHhhcceecchhcCCHH
Confidence 7654 4688888999654311 111 1 223567899999999886 7999999999875 79999999
Q ss_pred HHHHHHHHH
Q psy17974 559 TLKVIFKVR 567 (583)
Q Consensus 559 sl~~I~~~~ 567 (583)
+|..|...-
T Consensus 183 el~~Iv~r~ 191 (233)
T PF05496_consen 183 ELAKIVKRS 191 (233)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998654
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.8e-10 Score=119.94 Aligned_cols=135 Identities=25% Similarity=0.384 Sum_probs=99.1
Q ss_pred HHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh-HHHHHHHHhhhhhhcCccccCCCCC
Q psy17974 398 IMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS-ARTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 398 ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~-~~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
.+..++++++ +++|.||||||||++++.++.... .-+..+|+.++. ++++++++..-..+ ..|+
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~~gvkdlr~i~e~a~~~~-------~~gr 104 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVTSGVKDLREIIEEARKNR-------LLGR 104 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC------CceEEeccccccHHHHHHHHHHHHHHH-------hcCC
Confidence 3567788774 899999999999999999888652 234667886653 56777766542211 1267
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCC-CCCCCCCCChhhhccceEEEeC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAP-PGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p-~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
+.|+||||+|.-.+.+ | ++|=-.+|.| .+.+|||++. |+ +.+++.+++|+.|+.+.
T Consensus 105 ~tiLflDEIHRfnK~Q---Q---D~lLp~vE~G--------------~iilIGATTENPs---F~ln~ALlSR~~vf~lk 161 (436)
T COG2256 105 RTILFLDEIHRFNKAQ---Q---DALLPHVENG--------------TIILIGATTENPS---FELNPALLSRARVFELK 161 (436)
T ss_pred ceEEEEehhhhcChhh---h---hhhhhhhcCC--------------eEEEEeccCCCCC---eeecHHHhhhhheeeee
Confidence 8999999999876543 1 2333444433 4788888653 33 68999999999999999
Q ss_pred CCCHHHHHHHHHHHh
Q psy17974 554 SPTEDTLKVIFKVRT 568 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l 568 (583)
+.+.+++..+.+.-+
T Consensus 162 ~L~~~di~~~l~ra~ 176 (436)
T COG2256 162 PLSSEDIKKLLKRAL 176 (436)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999998843
No 20
>KOG0733|consensus
Probab=99.15 E-value=9.8e-11 Score=126.52 Aligned_cols=152 Identities=24% Similarity=0.300 Sum_probs=101.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+..-+.|||.||||||||+++++++.++ +..++.| |+- .+..-+-+.-+++-+.+|. +....+||+|||
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel----~vPf~~i--sAp----eivSGvSGESEkkiRelF~~A~~~aPcivFiD 289 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGEL----GVPFLSI--SAP----EIVSGVSGESEKKIRELFDQAKSNAPCIVFID 289 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhc----CCceEee--cch----hhhcccCcccHHHHHHHHHHHhccCCeEEEee
Confidence 3445789999999999999999999987 2333333 331 1111112223444444554 345679999999
Q ss_pred CCCCCCcccCCCCChHH--HHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCCC
Q psy17974 482 DVNMPKLETYGAQPPIE--LLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSPT 556 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lE--lLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p~ 556 (583)
||+.-.+..-++|.-+| .+-|++..- |.-..+-..-.++.+|||+|.|. .++|.|.| || +-|.+.-|+
T Consensus 290 eIDAI~pkRe~aqreMErRiVaQLlt~m---D~l~~~~~~g~~VlVIgATnRPD----slDpaLRRaGRFdrEI~l~vP~ 362 (802)
T KOG0733|consen 290 EIDAITPKREEAQREMERRIVAQLLTSM---DELSNEKTKGDPVLVIGATNRPD----SLDPALRRAGRFDREICLGVPS 362 (802)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhh---hcccccccCCCCeEEEecCCCCc----ccCHHHhccccccceeeecCCc
Confidence 99987776656665444 344544311 11111111124699999999987 78998887 66 479999999
Q ss_pred HHHHHHHHHHHhccc
Q psy17974 557 EDTLKVIFKVRTSPG 571 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~ 571 (583)
+.+-..|...+.++.
T Consensus 363 e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 363 ETAREEILRIICRGL 377 (802)
T ss_pred hHHHHHHHHHHHhhC
Confidence 999999999998854
No 21
>KOG0730|consensus
Probab=99.15 E-value=1.3e-10 Score=127.06 Aligned_cols=152 Identities=19% Similarity=0.308 Sum_probs=102.3
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEE
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLA 477 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~v 477 (583)
.+.-++.-+.|||+||||||||++++++++.- ...++.+ --++-+-+.+ +.=|+.-+.+|. +....++|
T Consensus 461 ~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----~~nFlsv-----kgpEL~sk~v-GeSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 461 ARFGISPPKGVLLYGPPGCGKTLLAKALANEA----GMNFLSV-----KGPELFSKYV-GESERAIREVFRKARQVAPCI 530 (693)
T ss_pred HHhcCCCCceEEEECCCCcchHHHHHHHhhhh----cCCeeec-----cCHHHHHHhc-CchHHHHHHHHHHHhhcCCeE
Confidence 44446778999999999999999999999864 2233333 2222222111 111121122222 22344689
Q ss_pred EEecCCCCCCcccCCCCC--hHHHHHHHHH-hCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEE
Q psy17974 478 VFVDDVNMPKLETYGAQP--PIELLRQFLD-FGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLS 551 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~--~lElLRq~ld-~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~ 551 (583)
+|+|||+.-.....|... .--.|-|++. ..|.-. -.++.+|||+|.|. .|++.++| || .+|+
T Consensus 531 iFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--------~k~V~ViAATNRpd----~ID~ALlRPGRlD~iiy 598 (693)
T KOG0730|consen 531 IFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--------LKNVLVIAATNRPD----MIDPALLRPGRLDRIIY 598 (693)
T ss_pred EehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--------cCcEEEEeccCChh----hcCHHHcCCcccceeEe
Confidence 999999987666544322 3445666653 334422 25899999999997 89999999 78 4999
Q ss_pred eCCCCHHHHHHHHHHHhcccc
Q psy17974 552 LPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~~l 572 (583)
+|.|+.++-..|++...+..-
T Consensus 599 VplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 599 VPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred ecCccHHHHHHHHHHHHhcCC
Confidence 999999999999999987654
No 22
>KOG0731|consensus
Probab=99.13 E-value=1.9e-10 Score=129.19 Aligned_cols=148 Identities=23% Similarity=0.350 Sum_probs=102.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
.+.-+.|||+||||||||.++++++.+- +..+ ++.|+ +.+.+++-+--.-+.+..|. +..+.++++|||
T Consensus 341 AKiPkGvLL~GPPGTGKTLLAKAiAGEA----gVPF--~svSG----SEFvE~~~g~~asrvr~lf~~ar~~aP~iifid 410 (774)
T KOG0731|consen 341 AKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPF--FSVSG----SEFVEMFVGVGASRVRDLFPLARKNAPSIIFID 410 (774)
T ss_pred CcCcCceEEECCCCCcHHHHHHHHhccc----CCce--eeech----HHHHHHhcccchHHHHHHHHHhhccCCeEEEec
Confidence 3445899999999999999999999853 3333 33333 23333322211223334443 346779999999
Q ss_pred CCCCCCcccC-----CCCC-hHHHHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEE
Q psy17974 482 DVNMPKLETY-----GAQP-PIELLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLS 551 (583)
Q Consensus 482 Dln~p~~d~y-----g~q~-~lElLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~ 551 (583)
||+.+..... |.|+ --..|.|++ +..||-. -.++.++||||.|. .+++.|+| || +.|+
T Consensus 411 eida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--------~~~vi~~a~tnr~d----~ld~allrpGRfdr~i~ 478 (774)
T KOG0731|consen 411 EIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--------SKGVIVLAATNRPD----ILDPALLRPGRFDRQIQ 478 (774)
T ss_pred ccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--------CCcEEEEeccCCcc----ccCHHhcCCCcccccee
Confidence 9999876652 3333 334677776 5556632 14688999999987 68888887 56 4799
Q ss_pred eCCCCHHHHHHHHHHHhcccc
Q psy17974 552 LPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~~l 572 (583)
++.|+...-..||..++...-
T Consensus 479 i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 479 IDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred ccCCchhhhHHHHHHHhhccC
Confidence 999999999999999887543
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.11 E-value=2.4e-10 Score=125.47 Aligned_cols=150 Identities=19% Similarity=0.309 Sum_probs=91.7
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhccc----CCceEEEEEeccCC--------ChHHHHHHHHhhhhhhcCccccCC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLAS----NTWAALTINFSAQT--------SSARTQEILEGKLDKRTKTLLGAP 471 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~----~~~~~~~i~fS~~T--------t~~~lq~~ie~~l~~~~~~~~~p~ 471 (583)
...+++||+||||||||++++++++.+... ......+++.+... +...+..+++ .... ...
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~-~Ar~------~a~ 286 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQ-RARE------KAS 286 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHH-HHHH------Hhh
Confidence 345789999999999999999999987321 01123333433211 0011111111 1110 012
Q ss_pred CCCeEEEEecCCCCCCccc-CC-CCCh-HHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--
Q psy17974 472 LGKRLAVFVDDVNMPKLET-YG-AQPP-IELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR-- 545 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~-yg-~q~~-lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr-- 545 (583)
.++++|+||||++...... .| +... -.++-|++.. .|+. ...++.+|||+|.+. .|+++++|
T Consensus 287 ~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~--------~~~~ViVI~ATN~~d----~LDpALlRpG 354 (512)
T TIGR03689 287 DGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE--------SLDNVIVIGASNRED----MIDPAILRPG 354 (512)
T ss_pred cCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc--------cCCceEEEeccCChh----hCCHhhcCcc
Confidence 4578999999999754322 11 1111 1123333321 2221 124688999999986 79999999
Q ss_pred cce-EEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 546 HFG-LLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 546 ~f~-vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
||. .|.++.|+.+....||..++...+
T Consensus 355 RfD~~I~~~~Pd~e~r~~Il~~~l~~~l 382 (512)
T TIGR03689 355 RLDVKIRIERPDAEAAADIFSKYLTDSL 382 (512)
T ss_pred ccceEEEeCCCCHHHHHHHHHHHhhccC
Confidence 885 699999999999999999987543
No 24
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.11 E-value=2.6e-10 Score=133.38 Aligned_cols=152 Identities=18% Similarity=0.283 Sum_probs=100.0
Q ss_pred HHHHHHhc-CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCC----ChHHHHHHHHhhhhhhcCc
Q psy17974 398 IMEKLLLV-NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQT----SSARTQEILEGKLDKRTKT 466 (583)
Q Consensus 398 ll~~~l~~-~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~T----t~~~lq~~ie~~l~~~~~~ 466 (583)
+++.+... ..+++|+||||||||++++.+++.+... .+.....+.++.-. ....+.+-+..-++.-.+
T Consensus 199 ~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~- 277 (852)
T TIGR03345 199 MIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKA- 277 (852)
T ss_pred HHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHh-
Confidence 33433333 4699999999999999999998876211 12334455554321 122233333333332111
Q ss_pred cccCCCCCeEEEEecCCCCCCcc--cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhh
Q psy17974 467 LLGAPLGKRLAVFVDDVNMPKLE--TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRF 543 (583)
Q Consensus 467 ~~~p~~gk~~vlfiDDln~p~~d--~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rl 543 (583)
.+++.|+||||+|.-... .-|.+.+-.+|...++.| .+++|||++++. .-...+++.|
T Consensus 278 -----~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--------------~l~~IgaTT~~e~~~~~~~d~AL 338 (852)
T TIGR03345 278 -----SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--------------ELRTIAATTWAEYKKYFEKDPAL 338 (852)
T ss_pred -----cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--------------CeEEEEecCHHHHhhhhhccHHH
Confidence 135789999999986432 124455556777777644 578999998854 2235689999
Q ss_pred hccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 544 VRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 544 lr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.|||.+|.+++|+.++...|+..+..
T Consensus 339 ~rRf~~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 339 TRRFQVVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred HHhCeEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999765554
No 25
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.10 E-value=2e-10 Score=102.93 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=66.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCc----cccCCCCCeEEEEecCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT----LLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~----~~~p~~gk~~vlfiDDl 483 (583)
||||.|+||+|||++++++++.+ +..+.+|.|++...++++... .+-....+ ..||--. -|+++|||
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----~~~f~RIq~tpdllPsDi~G~---~v~~~~~~~f~~~~GPif~--~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----GLSFKRIQFTPDLLPSDILGF---PVYDQETGEFEFRPGPIFT--NILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----T--EEEEE--TT--HHHHHEE---EEEETTTTEEEEEE-TT-S--SEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHc----CCceeEEEecCCCCcccceee---eeeccCCCeeEeecChhhh--ceeeeccc
Confidence 68999999999999999999987 346778999988888886643 21111112 1234332 38899999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccce
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFG 548 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~ 548 (583)
|.+.+.. |+ .+| +.++.+.. ......+.--..+.+|||+||.. .|..+++..++.||.
T Consensus 72 Nrappkt---Qs--AlL-eam~Er~V-t~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 72 NRAPPKT---QS--ALL-EAMEERQV-TIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp GGS-HHH---HH--HHH-HHHHHSEE-EETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ccCCHHH---HH--HHH-HHHHcCeE-EeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 9987652 22 244 34443322 11222344445699999999975 689999999999985
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.10 E-value=4.8e-10 Score=123.12 Aligned_cols=139 Identities=19% Similarity=0.325 Sum_probs=90.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC------ChHHHHHHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT------SSARTQEILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T------t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
..+++||+||||||||+++++++... +...+.++.+... +...+.+++ .. ....+++|+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~----~~~~~~l~~~~l~~~~vGese~~l~~~f----~~-------A~~~~P~IL 322 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW----QLPLLRLDVGKLFGGIVGESESRMRQMI----RI-------AEALSPCIL 322 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEEEhHHhcccccChHHHHHHHHH----HH-------HHhcCCcEE
Confidence 35789999999999999999999976 3445555543311 111222221 11 112357899
Q ss_pred EecCCCCCCc--ccCCC-CChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEe
Q psy17974 479 FVDDVNMPKL--ETYGA-QPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSL 552 (583)
Q Consensus 479 fiDDln~p~~--d~yg~-q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i 552 (583)
||||++..-. +..|. ......+.+++. |.+..+ .++.+|||+|.+. .+++.++| +|. ++++
T Consensus 323 ~IDEID~~~~~~~~~~d~~~~~rvl~~lL~---~l~~~~------~~V~vIaTTN~~~----~Ld~allR~GRFD~~i~v 389 (489)
T CHL00195 323 WIDEIDKAFSNSESKGDSGTTNRVLATFIT---WLSEKK------SPVFVVATANNID----LLPLEILRKGRFDEIFFL 389 (489)
T ss_pred EehhhhhhhccccCCCCchHHHHHHHHHHH---HHhcCC------CceEEEEecCChh----hCCHHHhCCCcCCeEEEe
Confidence 9999985322 22221 122333333332 222111 3688999999886 79999998 885 8999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~ 571 (583)
+.|+.++...|+..++...
T Consensus 390 ~lP~~~eR~~Il~~~l~~~ 408 (489)
T CHL00195 390 DLPSLEEREKIFKIHLQKF 408 (489)
T ss_pred CCcCHHHHHHHHHHHHhhc
Confidence 9999999999999998764
No 27
>KOG0738|consensus
Probab=99.10 E-value=2.2e-10 Score=118.29 Aligned_cols=145 Identities=17% Similarity=0.266 Sum_probs=96.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH----HHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ----EILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq----~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
...=+.||++||||||||+|+++++.+. .+.++|.|+.|-.+.-. +++.--++ -...|.| .+|
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKlvRlLFe--mARfyAP-----StI 308 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKLVRLLFE--MARFYAP-----STI 308 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHHHHHHHH--HHHHhCC-----cee
Confidence 3334789999999999999999999875 25677777765332221 11110111 1123444 489
Q ss_pred EecCCCCCCcccCCCCC-------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EE
Q psy17974 479 FVDDVNMPKLETYGAQP-------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LL 550 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~-------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi 550 (583)
|||||+..-....|+.. --|||-|+-.-++-.+. -.-|.++||+|-|= +|+..|+|+|- -|
T Consensus 309 FiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~-------~k~VmVLAATN~PW----diDEAlrRRlEKRI 377 (491)
T KOG0738|consen 309 FIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLEN-------SKVVMVLAATNFPW----DIDEALRRRLEKRI 377 (491)
T ss_pred ehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccc-------ceeEEEEeccCCCc----chHHHHHHHHhhhe
Confidence 99999975443333211 24677666433332221 12378889999987 89999999996 79
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+||.|+.+.-...+...|...
T Consensus 378 yIPLP~~~~R~~Li~~~l~~~ 398 (491)
T KOG0738|consen 378 YIPLPDAEARSALIKILLRSV 398 (491)
T ss_pred eeeCCCHHHHHHHHHHhhccc
Confidence 999999999998888877654
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.10 E-value=1.3e-09 Score=107.45 Aligned_cols=161 Identities=22% Similarity=0.331 Sum_probs=110.3
Q ss_pred eeeCchhhhHHHHHHHHHhc--------CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH
Q psy17974 386 MVPTIDTIRFGSIMEKLLLV--------NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 386 ~VpT~dt~r~~~ll~~~l~~--------~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
+|--.+..|-..++-..+++ .++||+.||||||||+++++++++. +...+.++ + . ++|.
T Consensus 123 ViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----kvp~l~vk--a----t---~liG 189 (368)
T COG1223 123 VIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----KVPLLLVK--A----T---ELIG 189 (368)
T ss_pred hhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----CCceEEec--h----H---HHHH
Confidence 44455666666677667665 4799999999999999999999865 22222221 1 1 1222
Q ss_pred hhh---hhhcCcccc-CCCCCeEEEEecCCCCCCccc-CCC--CChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEec
Q psy17974 458 GKL---DKRTKTLLG-APLGKRLAVFVDDVNMPKLET-YGA--QPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 458 ~~l---~~~~~~~~~-p~~gk~~vlfiDDln~p~~d~-yg~--q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
.++ .++-+..|. +....+||+||||++.-..|. |.. ..+-|.+..++.. .|. +.-+++..|||+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi--------~eneGVvtIaaT 261 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI--------KENEGVVTIAAT 261 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc--------ccCCceEEEeec
Confidence 222 122223332 345668999999999887775 321 2366777777642 222 234578999999
Q ss_pred CCCCCCCCCCChhhhccce-EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 530 APPGGGRMPLTPRFVRHFG-LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
|.|. -+++...++|- -|-+-.|+.++...|...+.+.+
T Consensus 262 N~p~----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 262 NRPE----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred CChh----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 9986 79999999996 68888999999999998887654
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.09 E-value=2.6e-10 Score=118.69 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=91.4
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC------CCCCeEE
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA------PLGKRLA 477 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p------~~gk~~v 477 (583)
+....++|.||||||||.+++++++++ +..++.++-+.-.+ -.-+.-++.-+..|.. ..++++|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----g~~~i~vsa~eL~s------k~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----GIEPIVMSAGELES------ENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----CCCeEEEEHHHhhc------CcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 445678999999999999999999987 33444443332221 0000111111122210 2467899
Q ss_pred EEecCCCCCCcccCCCCCh------HHHHHHHHHh------CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc
Q psy17974 478 VFVDDVNMPKLETYGAQPP------IELLRQFLDF------GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR 545 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~------lElLRq~ld~------~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr 545 (583)
||||||+.-....-++|.. ...|=.++|. +|.|+.. ....++.+|||+|.|. .|++.|+|
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~----~~~~~V~VIaTTNrpd----~LDpALlR 287 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREK----EEIPRVPIIVTGNDFS----TLYAPLIR 287 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccccc----ccCCCceEEEeCCCcc----cCCHhHcC
Confidence 9999999643322223322 1222233443 4444211 1245789999999887 89999999
Q ss_pred --cceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 546 --HFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 546 --~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
||-.. +..|+.++...|+..+++.
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRD 313 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhcc
Confidence 88754 3579999999999988764
No 30
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.09 E-value=3.7e-10 Score=121.38 Aligned_cols=143 Identities=22% Similarity=0.310 Sum_probs=88.2
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDD 482 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDD 482 (583)
...+++||+||||||||++++++++.+. ...+.+..+. ..++.+.. -++.-+..|. .....++|+||||
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~----~~fi~i~~s~-----l~~k~~ge-~~~~lr~lf~~A~~~~P~ILfIDE 246 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT----ATFIRVVGSE-----FVQKYLGE-GPRMVRDVFRLARENAPSIIFIDE 246 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC----CCEEEEehHH-----HHHHhcch-hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 3468999999999999999999998752 2233332221 11111110 0010111111 1234578999999
Q ss_pred CCCCCcccCCCC---------ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEE
Q psy17974 483 VNMPKLETYGAQ---------PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLL 550 (583)
Q Consensus 483 ln~p~~d~yg~q---------~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi 550 (583)
++......++.+ ...++|+++- |+ ....++.+|+|+|.|. .++++++| +| ..|
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld---~~--------~~~~~v~VI~aTN~~d----~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMD---GF--------DQTTNVKVIMATNRAD----TLDPALLRPGRLDRKI 311 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhh---cc--------CCCCCEEEEEecCCch----hCCHHHcCCCcccEEE
Confidence 997543332221 1233333321 21 1124688999999886 89999998 66 369
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.++.|+.++...|+..++..+
T Consensus 312 ~~~~P~~~~R~~Il~~~~~~~ 332 (398)
T PTZ00454 312 EFPLPDRRQKRLIFQTITSKM 332 (398)
T ss_pred EeCCcCHHHHHHHHHHHHhcC
Confidence 999999999999999887643
No 31
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.08 E-value=3.9e-10 Score=131.36 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=99.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCc-------cccCCCCCeEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT-------LLGAPLGKRLAV 478 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~-------~~~p~~gk~~vl 478 (583)
+.+++|+||||||||++++.+++.+. .....++++...+...+.. .-....+. .+.-...+..|+
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~----~~~~~i~~~~~~~~~~i~g----~~~~~~g~~~g~i~~~l~~~~~~~~vi 418 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALN----RKFVRFSLGGVRDEAEIRG----HRRTYVGAMPGRIIQGLKKAKTKNPLF 418 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc----CCeEEEeCCCcccHHHHcC----CCCceeCCCCchHHHHHHHhCcCCCEE
Confidence 45799999999999999999999872 3455666655444332211 00000000 000011223388
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHh---CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCC
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDF---GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSP 555 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~---~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p 555 (583)
|+||++....+..| .+...|.+++|. +.|.|..-..-....++.||+|+|++. .+++.|++||.+|.++.|
T Consensus 419 llDEidk~~~~~~~--~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~----~i~~~L~~R~~vi~~~~~ 492 (775)
T TIGR00763 419 LLDEIDKIGSSFRG--DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID----TIPRPLLDRMEVIELSGY 492 (775)
T ss_pred EEechhhcCCccCC--CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch----hCCHHHhCCeeEEecCCC
Confidence 99999988765433 255666677763 444443222223456889999999865 799999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy17974 556 TEDTLKVIFKVRTS 569 (583)
Q Consensus 556 ~~~sl~~I~~~~l~ 569 (583)
+.++...|...++.
T Consensus 493 ~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 493 TEEEKLEIAKKYLI 506 (775)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988773
No 32
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.07 E-value=3.2e-10 Score=131.31 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=99.0
Q ss_pred HHHHHHhc-CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC
Q psy17974 398 IMEKLLLV-NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA 470 (583)
Q Consensus 398 ll~~~l~~-~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p 470 (583)
+++.+... +.+++|+||||||||++++.++..+... .+..+..++.++........+-.+.++ +.++.-
T Consensus 194 ~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l----~~i~~~ 269 (731)
T TIGR02639 194 TIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERL----KAVVSE 269 (731)
T ss_pred HHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHH----HHHHHH
Confidence 44444433 4699999999999999999998865211 134455555444321111111112222 111110
Q ss_pred -CCCCeEEEEecCCCCCCccc---CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhc
Q psy17974 471 -PLGKRLAVFVDDVNMPKLET---YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVR 545 (583)
Q Consensus 471 -~~gk~~vlfiDDln~p~~d~---yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr 545 (583)
...++.|+||||+|.-.... .|+...-.+|+..++.| .+++|||+|++. .-....++.|.|
T Consensus 270 ~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--------------~i~~IgaTt~~e~~~~~~~d~al~r 335 (731)
T TIGR02639 270 IEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--------------KLRCIGSTTYEEYKNHFEKDRALSR 335 (731)
T ss_pred HhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--------------CeEEEEecCHHHHHHHhhhhHHHHH
Confidence 11236799999999653221 22333556787777633 578999999754 222467999999
Q ss_pred cceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 546 HFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 546 ~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
||.+|.+++|+.++...|+..+...+
T Consensus 336 Rf~~i~v~~p~~~~~~~il~~~~~~~ 361 (731)
T TIGR02639 336 RFQKIDVGEPSIEETVKILKGLKEKY 361 (731)
T ss_pred hCceEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999877654
No 33
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.07 E-value=1.6e-09 Score=107.98 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=104.9
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~ 464 (583)
-+|-|+.|.|.-.-+...+..+....+.||+|||||.+++++.+.+ +..++.+||+..++...+.+++.+-..-
T Consensus 11 rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~l----G~~~~vfnc~~~~~~~~l~ril~G~~~~-- 84 (231)
T PF12774_consen 11 RLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARAL----GRFVVVFNCSEQMDYQSLSRILKGLAQS-- 84 (231)
T ss_dssp -----HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCT----T--EEEEETTSSS-HHHHHHHHHHHHHH--
T ss_pred CceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHh----CCeEEEecccccccHHHHHHHHHHHhhc--
Confidence 5899999999888888888889999999999999999999999987 4467889999999999988887655442
Q ss_pred CccccCCCCCeEEEEecCCCCCCcccCC--CCChHHHHHHHHH-hCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 465 KTLLGAPLGKRLAVFVDDVNMPKLETYG--AQPPIELLRQFLD-FGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 465 ~~~~~p~~gk~~vlfiDDln~p~~d~yg--~q~~lElLRq~ld-~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
|-| +.+||+|.-..+.-. +|. +..+++.+. ...-+.....+..-..++.+..+|||...||.++|+
T Consensus 85 --------GaW--~cfdefnrl~~~vLS~i~~~-i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~ 153 (231)
T PF12774_consen 85 --------GAW--LCFDEFNRLSEEVLSVISQQ-IQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPE 153 (231)
T ss_dssp --------T-E--EEEETCCCSSHHHHHHHHHH-HHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-H
T ss_pred --------Cch--hhhhhhhhhhHHHHHHHHHH-HHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCH
Confidence 334 457999987655210 111 122222222 222233333344444578888999998899999999
Q ss_pred hhhccceEEEeCCCCHHHHHHHH
Q psy17974 542 RFVRHFGLLSLPSPTEDTLKVIF 564 (583)
Q Consensus 542 Rllr~f~vi~i~~p~~~sl~~I~ 564 (583)
.+...|+.+.+..||...+..|.
T Consensus 154 nLk~lFRpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 154 NLKALFRPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHCTTEEEEE--S--HHHHHHHH
T ss_pred hHHHHhheeEEeCCCHHHHHHHH
Confidence 99999999999999987766654
No 34
>KOG0736|consensus
Probab=99.07 E-value=4.7e-10 Score=124.13 Aligned_cols=159 Identities=19% Similarity=0.351 Sum_probs=105.6
Q ss_pred HHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCC
Q psy17974 396 GSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGK 474 (583)
Q Consensus 396 ~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk 474 (583)
-.++..-+..+..|||+||||||||.++|+++.++ .++|=+.-.++-+ .+.-+.=|+..+.+|. ++..+
T Consensus 695 peLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---------sL~FlSVKGPELL-NMYVGqSE~NVR~VFerAR~A~ 764 (953)
T KOG0736|consen 695 PELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---------SLNFLSVKGPELL-NMYVGQSEENVREVFERARSAA 764 (953)
T ss_pred hhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------eeeEEeecCHHHH-HHHhcchHHHHHHHHHHhhccC
Confidence 34444445556789999999999999999999876 2444343445444 3333444555556664 45778
Q ss_pred eEEEEecCCCCCCcccC--C-CCChHH-HHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc
Q psy17974 475 RLAVFVDDVNMPKLETY--G-AQPPIE-LLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF 547 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~y--g-~q~~lE-lLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f 547 (583)
+||||+||++.-.+.+. | +.-++. ..-|++ |-.|.-|. ...++.+|||+|.|. -|+|.|+| ||
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~------~s~~VFViGATNRPD----LLDpALLRPGRF 834 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS------SSQDVFVIGATNRPD----LLDPALLRPGRF 834 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC------CCCceEEEecCCCcc----ccChhhcCCCcc
Confidence 99999999998666542 2 112222 333443 33455432 235799999999997 78999999 78
Q ss_pred e-EEEeCCCCH-HHHHHHHHHHhcccccC
Q psy17974 548 G-LLSLPSPTE-DTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 548 ~-vi~i~~p~~-~sl~~I~~~~l~~~l~~ 574 (583)
- .+++..++. ++-.+|..++-+.+--+
T Consensus 835 DKLvyvG~~~d~esk~~vL~AlTrkFkLd 863 (953)
T KOG0736|consen 835 DKLVYVGPNEDAESKLRVLEALTRKFKLD 863 (953)
T ss_pred ceeEEecCCccHHHHHHHHHHHHHHccCC
Confidence 5 788887754 56667888876655333
No 35
>KOG0737|consensus
Probab=99.07 E-value=1.6e-10 Score=119.13 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=102.1
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEE
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAV 478 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vl 478 (583)
..++...++|||.||||||||+++++++++. +...+.+..|.-|+ ..+ +.-+|-.+.+|. |..=+++++
T Consensus 121 g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~-KWf-----gE~eKlv~AvFslAsKl~P~iI 190 (386)
T KOG0737|consen 121 GKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTS-KWF-----GEAQKLVKAVFSLASKLQPSII 190 (386)
T ss_pred cccccCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccch-hhH-----HHHHHHHHHHHhhhhhcCccee
Confidence 3455578899999999999999999999864 34555566666554 333 122233333443 334568899
Q ss_pred EecCCCCCCcccCCCCChHHHHH----HHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeC
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLR----QFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLP 553 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLR----q~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~ 553 (583)
|||+++.--..+ ++ .-.|..+ |++- -||.- .-+.-+.+.++||+|.|. +++.+.+||+. +++|+
T Consensus 191 FIDEvds~L~~R-~s-~dHEa~a~mK~eFM~---~WDGl--~s~~~~rVlVlgATNRP~----DlDeAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 191 FIDEVDSFLGQR-RS-TDHEATAMMKNEFMA---LWDGL--SSKDSERVLVLGATNRPF----DLDEAIIRRLPRRFHVG 259 (386)
T ss_pred ehhhHHHHHhhc-cc-chHHHHHHHHHHHHH---Hhccc--cCCCCceEEEEeCCCCCc----cHHHHHHHhCcceeeeC
Confidence 999998644333 21 1234433 3333 23321 112223588999999986 89999999995 89999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy17974 554 SPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~ 570 (583)
-|+..+-..|+..+|+.
T Consensus 260 lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 260 LPDAEQRRKILKVILKK 276 (386)
T ss_pred CCchhhHHHHHHHHhcc
Confidence 99999999999999974
No 36
>KOG0727|consensus
Probab=99.06 E-value=2.7e-10 Score=111.52 Aligned_cols=145 Identities=24% Similarity=0.360 Sum_probs=101.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+...+.|||+||||||||+++++.++.- ...++.++ .++-+|+.+... -+-.+.+|. +..+.+.|+|||
T Consensus 186 idpprgvllygppg~gktml~kava~~t----~a~firvv-----gsefvqkylgeg-prmvrdvfrlakenapsiifid 255 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----TAAFIRVV-----GSEFVQKYLGEG-PRMVRDVFRLAKENAPSIIFID 255 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----chheeeec-----cHHHHHHHhccC-cHHHHHHHHHHhccCCcEEEee
Confidence 5556899999999999999999998743 22344443 344566554221 011123443 346678899999
Q ss_pred CCCCCCcccCCCCC---------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eE
Q psy17974 482 DVNMPKLETYGAQP---------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GL 549 (583)
Q Consensus 482 Dln~p~~d~yg~q~---------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~v 549 (583)
|++.-....|.+|. .+|+|.|+ .|| |. -.|+.+|.|+|... .++|.++|-- +-
T Consensus 256 eidaiatkrfdaqtgadrevqril~ellnqm---dgf-dq-------~~nvkvimatnrad----tldpallrpgrldrk 320 (408)
T KOG0727|consen 256 EIDAIATKRFDAQTGADREVQRILIELLNQM---DGF-DQ-------TTNVKVIMATNRAD----TLDPALLRPGRLDRK 320 (408)
T ss_pred hhhhHhhhhccccccccHHHHHHHHHHHHhc---cCc-Cc-------ccceEEEEecCccc----ccCHhhcCCcccccc
Confidence 99988777777665 46777665 344 22 24788898888765 7889888854 35
Q ss_pred EEeCCCCHHHHHHHHHHHhcccc
Q psy17974 550 LSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l~~~l 572 (583)
|.+|.|+.-.-+-+|+++...+.
T Consensus 321 iefplpdrrqkrlvf~titskm~ 343 (408)
T KOG0727|consen 321 IEFPLPDRRQKRLVFSTITSKMN 343 (408)
T ss_pred ccCCCCchhhhhhhHHhhhhccc
Confidence 89999999999999999976553
No 37
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.04 E-value=1.6e-09 Score=105.21 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcc---cCCceEE----------------EEEeccCCChHHHHHH
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLA---SNTWAAL----------------TINFSAQTSSARTQEI 455 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~---~~~~~~~----------------~i~fS~~Tt~~~lq~~ 455 (583)
....+......++++|+.||||||||++++.+..-++. .+..... ...|-+--.+.....+
T Consensus 11 aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~l 90 (206)
T PF01078_consen 11 AKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAAL 90 (206)
T ss_dssp HHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHH
T ss_pred HHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHH
Confidence 34456677778999999999999999999988654421 1111111 1111000000011111
Q ss_pred HHhhhhhhcCccccCC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCC
Q psy17974 456 LEGKLDKRTKTLLGAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAP 531 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p 531 (583)
+.+. ..+.|- ...+.|+|+||+|.-... ++|.|||.++.|-.. .+.........++++||||||
T Consensus 91 iGgg------~~~~PGeislAh~GVLflDE~~ef~~~------vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 91 IGGG------RPPRPGEISLAHRGVLFLDELNEFDRS------VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HEEG------GGEEE-CGGGGTTSEEEECETTTS-HH------HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred hCCC------cCCCcCHHHHhcCCEEEechhhhcCHH------HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecc
Confidence 1111 111111 234669999999987654 899999999988665 455556777889999999999
Q ss_pred CC
Q psy17974 532 PG 533 (583)
Q Consensus 532 ~~ 533 (583)
--
T Consensus 159 cp 160 (206)
T PF01078_consen 159 CP 160 (206)
T ss_dssp --
T ss_pred cc
Confidence 53
No 38
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.04 E-value=1.3e-09 Score=117.38 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=89.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..++|||+||||||||++++++++.+. ..++.++.+.... .....+.+..-++. .....++|+||||
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~-------a~~~~p~IlfiDE 232 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVVGSELVQKFIGEGARLVRELFEL-------AREKAPSIIFIDE 232 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhC----CCEEEeehHHHhHhhccchHHHHHHHHHH-------HHhcCCeEEEEec
Confidence 346899999999999999999998762 2334443332110 00000111111111 1123467999999
Q ss_pred CCCCCcccC-----CCCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeC
Q psy17974 483 VNMPKLETY-----GAQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLP 553 (583)
Q Consensus 483 ln~p~~d~y-----g~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~ 553 (583)
++.-..... |.......+.+++.. .|+-+ -.++.+|||+|.+. .+++.++| +| ..|.++
T Consensus 233 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--------~~~v~VI~aTn~~~----~ld~allRpgRfd~~I~v~ 300 (389)
T PRK03992 233 IDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--------RGNVKIIAATNRID----ILDPAILRPGRFDRIIEVP 300 (389)
T ss_pred hhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--------CCCEEEEEecCChh----hCCHHHcCCccCceEEEEC
Confidence 997533221 112233345555532 22211 23688999999875 78999987 77 479999
Q ss_pred CCCHHHHHHHHHHHhccc
Q psy17974 554 SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~ 571 (583)
.|+.+....|+..++...
T Consensus 301 ~P~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 301 LPDEEGRLEILKIHTRKM 318 (389)
T ss_pred CCCHHHHHHHHHHHhccC
Confidence 999999999999887654
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.03 E-value=7.2e-10 Score=99.69 Aligned_cols=125 Identities=19% Similarity=0.351 Sum_probs=76.9
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC--ChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT--SSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T--t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
|||+||||||||++++.+++.+ ++.++.++.+... ......+.+...+.+-.+. ++++|+||||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS------AKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT------STSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----cccccccccccccccccccccccccccccccccc------ccceeeeeccchhc
Confidence 6999999999999999999987 3556667666543 2233333444433331111 15789999999987
Q ss_pred CcccCCCCC--hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh-ccce-EEEeC
Q psy17974 487 KLETYGAQP--PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV-RHFG-LLSLP 553 (583)
Q Consensus 487 ~~d~yg~q~--~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll-r~f~-vi~i~ 553 (583)
..+...... .-+++++++..-...... -.++.+|+++|.+. .+++++. ++|. .+.+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~------~~~~~vI~ttn~~~----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 71 FPKSQPSSSSFEQRLLNQLLSLLDNPSSK------NSRVIVIATTNSPD----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp SHHCSTSSSHHHHHHHHHHHHHHHTTTTT------SSSEEEEEEESSGG----GSCHHHHSTTSEEEEEE-
T ss_pred ccccccccccccccccceeeecccccccc------cccceeEEeeCChh----hCCHhHHhCCCcEEEEcC
Confidence 666411111 223444444311111111 23588999999865 7999999 8886 46654
No 40
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.01 E-value=1e-09 Score=128.74 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=99.6
Q ss_pred HHHHHHHhc-CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChH----HHHHHHHhhhhhhcC
Q psy17974 397 SIMEKLLLV-NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSA----RTQEILEGKLDKRTK 465 (583)
Q Consensus 397 ~ll~~~l~~-~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~----~lq~~ie~~l~~~~~ 465 (583)
.+++.|... +.+++|+||||||||++++.++..+... .++.++.+++++..... .+.+.+..-++...+
T Consensus 189 ~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 189 RTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK 268 (857)
T ss_pred HHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 334444444 3499999999999999999998876321 14566666666532211 122222222221111
Q ss_pred ccccCCCCCeEEEEecCCCCCCcc--cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChh
Q psy17974 466 TLLGAPLGKRLAVFVDDVNMPKLE--TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPR 542 (583)
Q Consensus 466 ~~~~p~~gk~~vlfiDDln~p~~d--~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~R 542 (583)
.+++.|+||||+|+-... ..|+...-.+|...+..| .+++|||++++.- -...+++.
T Consensus 269 ------~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--------------~l~~IgaTt~~e~r~~~~~d~a 328 (857)
T PRK10865 269 ------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAA 328 (857)
T ss_pred ------cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--------------CCeEEEcCCCHHHHHHhhhcHH
Confidence 135689999999975432 123333456666655433 5789999988652 22468999
Q ss_pred hhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 543 FVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 543 llr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+.|||..|.++.|+.++...|+..+...
T Consensus 329 l~rRf~~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 329 LERRFQKVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred HHhhCCEEEeCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999877543
No 41
>PLN03025 replication factor C subunit; Provisional
Probab=99.01 E-value=4.2e-09 Score=110.43 Aligned_cols=169 Identities=16% Similarity=0.272 Sum_probs=105.6
Q ss_pred eeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhcccCCc--eEEE
Q psy17974 365 TPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLASNTW--AALT 440 (583)
Q Consensus 365 ~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~--~~~~ 440 (583)
.||.+++.+..++. +|.-.+.+. .+..++..+ .++||+||||||||++++.+++.+.. +.+ .+..
T Consensus 1 ~~w~~kyrP~~l~~-------~~g~~~~~~---~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~e 69 (319)
T PLN03025 1 LPWVEKYRPTKLDD-------IVGNEDAVS---RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLE 69 (319)
T ss_pred CChhhhcCCCCHHH-------hcCcHHHHH---HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceee
Confidence 37888765432222 233333322 244455554 47999999999999999999988632 222 2334
Q ss_pred EEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEee
Q psy17974 441 INFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTL 520 (583)
Q Consensus 441 i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i 520 (583)
+|-|.....+.+++.+...... + .....+++-|++|||++.-..+ .-+.|+..++. |.
T Consensus 70 ln~sd~~~~~~vr~~i~~~~~~--~--~~~~~~~~kviiiDE~d~lt~~------aq~aL~~~lE~---~~--------- 127 (319)
T PLN03025 70 LNASDDRGIDVVRNKIKMFAQK--K--VTLPPGRHKIVILDEADSMTSG------AQQALRRTMEI---YS--------- 127 (319)
T ss_pred ecccccccHHHHHHHHHHHHhc--c--ccCCCCCeEEEEEechhhcCHH------HHHHHHHHHhc---cc---------
Confidence 4444444445555554332211 1 1122355668999999986544 23556666662 11
Q ss_pred cCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 521 QDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 521 ~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
..+.|+.+||.+. .+.+.+.+++.++.++.|+.+++......+.+.
T Consensus 128 ~~t~~il~~n~~~----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 128 NTTRFALACNTSS----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred CCceEEEEeCCcc----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH
Confidence 2345777787654 577889999999999999999999888877653
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=5.5e-09 Score=109.96 Aligned_cols=137 Identities=22% Similarity=0.175 Sum_probs=92.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||||||||++++.+++.+. .....++.+....+..+...+.. + ++..|+||||++.-
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~----~~~~~~~~~~~~~~~~l~~~l~~-l------------~~~~vl~IDEi~~l 114 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG----VNIRITSGPALEKPGDLAAILTN-L------------EEGDVLFIDEIHRL 114 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC----CCeEEEecccccChHHHHHHHHh-c------------ccCCEEEEecHhhc
Confidence 5799999999999999999999872 22333333333333344333211 1 23458999999975
Q ss_pred CcccCCCCChHHHHHHHHHhCCee---ecCC--Cee-EeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCCHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLY---DRDK--MFW-KTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPTEDT 559 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~y---d~~~--~~~-~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~~~s 559 (583)
..+ ..|.++.+++..... +... ... ..+.++.+|+|+++++ .+++++.+|| .++.+++++.++
T Consensus 115 ~~~------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~----~l~~~L~sRf~~~~~l~~~~~~e 184 (328)
T PRK00080 115 SPV------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG----LLTSPLRDRFGIVQRLEFYTVEE 184 (328)
T ss_pred chH------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc----cCCHHHHHhcCeeeecCCCCHHH
Confidence 432 467888888765432 1110 111 1345688999998875 6888999998 478999999999
Q ss_pred HHHHHHHHhcc
Q psy17974 560 LKVIFKVRTSP 570 (583)
Q Consensus 560 l~~I~~~~l~~ 570 (583)
+..|+......
T Consensus 185 ~~~il~~~~~~ 195 (328)
T PRK00080 185 LEKIVKRSARI 195 (328)
T ss_pred HHHHHHHHHHH
Confidence 99999987664
No 43
>KOG0726|consensus
Probab=98.99 E-value=8.7e-10 Score=110.04 Aligned_cols=150 Identities=28% Similarity=0.360 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCe
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKR 475 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~ 475 (583)
|.-+.-++..+.|+|+|+||||||.+++++++.- . -+|=..+.++.+|+.+... -+-.+..|. +....+
T Consensus 210 ~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT--S-------ATFlRvvGseLiQkylGdG-pklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 210 YYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT--S-------ATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAP 279 (440)
T ss_pred HHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc--c-------hhhhhhhhHHHHHHHhccc-hHHHHHHHHHHHhcCC
Confidence 3344557778999999999999999999998742 1 1122224445555543211 001112232 224557
Q ss_pred EEEEecCCCCCCcccCCCCC---------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 476 LAVFVDDVNMPKLETYGAQP---------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~---------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
.|+|||||+.-....|.+++ .+|+|.|+ .||-++ .|+.+|.|+|.-. .++|.|.|-
T Consensus 280 SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl---dGFdsr--------gDvKvimATnrie----~LDPaLiRP 344 (440)
T KOG0726|consen 280 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL---DGFDSR--------GDVKVIMATNRIE----TLDPALIRP 344 (440)
T ss_pred ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc---cCcccc--------CCeEEEEeccccc----ccCHhhcCC
Confidence 79999999998888887654 57888887 455443 4788999988765 789998886
Q ss_pred ce---EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 547 FG---LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 547 f~---vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
-+ -|-++.|+..+-+.||+-+-..+
T Consensus 345 GrIDrKIef~~pDe~TkkkIf~IHTs~M 372 (440)
T KOG0726|consen 345 GRIDRKIEFPLPDEKTKKKIFQIHTSRM 372 (440)
T ss_pred CccccccccCCCchhhhceeEEEeeccc
Confidence 54 48999999999999998665443
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.99 E-value=7.7e-10 Score=127.30 Aligned_cols=152 Identities=15% Similarity=0.254 Sum_probs=92.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccC------CceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC-CCCCeEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASN------TWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA-PLGKRLA 477 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~------~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p-~~gk~~v 477 (583)
.+.|+||+||||||||++++.+.......+ +.....++.++..... ...+..+++-+.++.- ...++.|
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~----~~~Ge~e~rl~~l~~~l~~~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT----KYRGDFEKRFKALLKQLEQDTNSI 281 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhccc----chhhhHHHHHHHHHHHHHhcCCCE
Confidence 467999999999999999999887542111 1112111111100000 0011112111111110 1123569
Q ss_pred EEecCCCCCCccc---CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChhhhccceEEEeC
Q psy17974 478 VFVDDVNMPKLET---YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 478 lfiDDln~p~~d~---yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~Rllr~f~vi~i~ 553 (583)
+||||+|.-.... .|.+.+..+|+.++..| ++++|||++++.- .....++.|.|||..|.++
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--------------~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ 347 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--------------KIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--------------CeEEEecCChHHHHHHhhccHHHHhhCcEEEeC
Confidence 9999999643221 12334556788777643 5789999998742 2346899999999999999
Q ss_pred CCCHHHHHHHHHHHhcccccC
Q psy17974 554 SPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~l~~ 574 (583)
+|+.++...|...+...+-..
T Consensus 348 ePs~~~~~~IL~~~~~~ye~~ 368 (758)
T PRK11034 348 EPSIEETVQIINGLKPKYEAH 368 (758)
T ss_pred CCCHHHHHHHHHHHHHHhhhc
Confidence 999999999999876554443
No 45
>KOG2028|consensus
Probab=98.97 E-value=5.7e-09 Score=107.07 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC-ChHHHHHHHHhhhhhhcCccc
Q psy17974 392 TIRFGSIMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT-SSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T-t~~~lq~~ie~~l~~~~~~~~ 468 (583)
.+...-++..+++.+. .++|.||||||||++++-++.+-. ...| .+|..|+.+ +..++.+++|+.-..+
T Consensus 146 lv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk-~~Sy--rfvelSAt~a~t~dvR~ife~aq~~~----- 217 (554)
T KOG2028|consen 146 LVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK-KHSY--RFVELSATNAKTNDVRDIFEQAQNEK----- 217 (554)
T ss_pred hcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC-CCce--EEEEEeccccchHHHHHHHHHHHHHH-----
Confidence 3344566788888875 889999999999999999988652 3334 455667643 3466777776542211
Q ss_pred cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce
Q psy17974 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG 548 (583)
Q Consensus 469 ~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~ 548 (583)
.-.+++.|+||||+|.-.+- |+- -|. -.+.-.+|.+|||++. +-.+++...|++++.
T Consensus 218 -~l~krkTilFiDEiHRFNks----QQD-----------~fL-----P~VE~G~I~lIGATTE--NPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 218 -SLTKRKTILFIDEIHRFNKS----QQD-----------TFL-----PHVENGDITLIGATTE--NPSFQLNAALLSRCR 274 (554)
T ss_pred -hhhcceeEEEeHHhhhhhhh----hhh-----------ccc-----ceeccCceEEEecccC--CCccchhHHHHhccc
Confidence 12356789999999975432 110 010 1122236899998753 123689999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
|+.+.....+.+.+|...-+...
T Consensus 275 VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhh
Confidence 99999999999999998866533
No 46
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.6e-09 Score=118.61 Aligned_cols=147 Identities=22% Similarity=0.307 Sum_probs=94.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+...+.+||+||||||||+++++++... +..++.+..+..++ ..+ +..++.-+..|. +...+++|+|+|
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~----~~~fi~v~~~~l~s-k~v-----Gesek~ir~~F~~A~~~~p~iiFiD 342 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALES----RSRFISVKGSELLS-KWV-----GESEKNIRELFEKARKLAPSIIFID 342 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhC----CCeEEEeeCHHHhc-ccc-----chHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4455689999999999999999999854 33455554442221 111 111222222222 124568899999
Q ss_pred CCCCCCcccCCC-CCh-HHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCCCC
Q psy17974 482 DVNMPKLETYGA-QPP-IELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPSPT 556 (583)
Q Consensus 482 Dln~p~~d~yg~-q~~-lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~p~ 556 (583)
|++.-....-++ ... ...+.|++. +.|.- ....++.+|||+|.|. .+++.++| +|. +++++.|+
T Consensus 343 EiDs~~~~r~~~~~~~~~r~~~~lL~---~~d~~----e~~~~v~vi~aTN~p~----~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 343 EIDSLASGRGPSEDGSGRRVVGQLLT---ELDGI----EKAEGVLVIAATNRPD----DLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred chhhhhccCCCCCchHHHHHHHHHHH---HhcCC----CccCceEEEecCCCcc----ccCHhhcccCccceEeecCCCC
Confidence 999754443211 111 233334432 11111 1235688999999987 79999999 996 89999999
Q ss_pred HHHHHHHHHHHhcc
Q psy17974 557 EDTLKVIFKVRTSP 570 (583)
Q Consensus 557 ~~sl~~I~~~~l~~ 570 (583)
.++...||..++..
T Consensus 412 ~~~r~~i~~~~~~~ 425 (494)
T COG0464 412 LEERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999874
No 47
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.96 E-value=1.5e-08 Score=109.04 Aligned_cols=166 Identities=20% Similarity=0.201 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhcccC-CceEEEEEeccCCChHHHHHHHHhhhhhh---cCc
Q psy17974 393 IRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLASN-TWAALTINFSAQTSSARTQEILEGKLDKR---TKT 466 (583)
Q Consensus 393 ~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~---~~~ 466 (583)
......+...+..+ .+++++||||||||++++.+++.+.... .+.++.+|+...+++..+...+-..+... ..+
T Consensus 40 ~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~ 119 (394)
T PRK00411 40 EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSG 119 (394)
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 34445555556543 5699999999999999999998763322 57788899887777655544443333210 000
Q ss_pred -----cc------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 467 -----LL------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 467 -----~~------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
.+ ....++++|++|||++... +..+.+....++|.+-+..+ .++.+|+++++..-
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~-~~~~~~~l~~l~~~~~~~~~------------~~v~vI~i~~~~~~- 185 (394)
T PRK00411 120 LSFDELFDKIAEYLDERDRVLIVALDDINYLF-EKEGNDVLYSLLRAHEEYPG------------ARIGVIGISSDLTF- 185 (394)
T ss_pred CCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh-ccCCchHHHHHHHhhhccCC------------CeEEEEEEECCcch-
Confidence 00 0123567899999999865 22233333444443332111 15778888776541
Q ss_pred CCCCChhhhccc--eEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 536 RMPLTPRFVRHF--GLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 536 r~~l~~Rllr~f--~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
...+++|..++| ..+.+++++.+++..|+...++..+
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~ 224 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF 224 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc
Confidence 112677777766 4789999999999999998876443
No 48
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.95 E-value=2.7e-09 Score=115.65 Aligned_cols=141 Identities=25% Similarity=0.360 Sum_probs=87.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
....|||+||||||||++++++++.+. ...+.+..|..... ......+...+.. ...+.++|+||||
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~----~~fi~V~~seL~~k~~Ge~~~~vr~lF~~-------A~~~~P~ILfIDE 284 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETS----ATFLRVVGSELIQKYLGDGPKLVRELFRV-------AEENAPSIVFIDE 284 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC----CCEEEEecchhhhhhcchHHHHHHHHHHH-------HHhCCCcEEeHHH
Confidence 456899999999999999999998762 22333332221110 0000111111111 1234578999999
Q ss_pred CCCCCcccC-----CCCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEE
Q psy17974 483 VNMPKLETY-----GAQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLL 550 (583)
Q Consensus 483 ln~p~~d~y-----g~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi 550 (583)
++......+ |... .+++|.++- |+- .-.++.+|+|+|.+. .++++++| +| ..|
T Consensus 285 ID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld---g~~--------~~~~V~VI~ATNr~d----~LDpaLlRpGRfd~~I 349 (438)
T PTZ00361 285 IDAIGTKRYDATSGGEKEIQRTMLELLNQLD---GFD--------SRGDVKVIMATNRIE----SLDPALIRPGRIDRKI 349 (438)
T ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHHHHh---hhc--------ccCCeEEEEecCChH----HhhHHhccCCeeEEEE
Confidence 986543322 1111 234443331 221 124688999998775 78999987 66 479
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.++.|+.+....|+..++...
T Consensus 350 ~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 350 EFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EeCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999887544
No 49
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.95 E-value=7.7e-09 Score=112.28 Aligned_cols=146 Identities=16% Similarity=0.273 Sum_probs=94.9
Q ss_pred hhhhHHHHHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 391 DTIRFGSIMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 391 dt~r~~~ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
+.+.....+..++..+. +++|+||||||||++++.+++... .....++.+. ...+.+...++..-..
T Consensus 19 ~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~----~~~~~l~a~~-~~~~~ir~ii~~~~~~------ 87 (413)
T PRK13342 19 HLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD----APFEALSAVT-SGVKDLREVIEEARQR------ 87 (413)
T ss_pred HHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEeccc-ccHHHHHHHHHHHHHh------
Confidence 33333444556666654 799999999999999999988752 2233343322 2234444444332111
Q ss_pred cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce
Q psy17974 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG 548 (583)
Q Consensus 469 ~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~ 548 (583)
...|++.|+||||++....+ ..+.|...++.+ .+.+++|++.. ....+++.+.+++.
T Consensus 88 -~~~g~~~vL~IDEi~~l~~~------~q~~LL~~le~~--------------~iilI~att~n--~~~~l~~aL~SR~~ 144 (413)
T PRK13342 88 -RSAGRRTILFIDEIHRFNKA------QQDALLPHVEDG--------------TITLIGATTEN--PSFEVNPALLSRAQ 144 (413)
T ss_pred -hhcCCceEEEEechhhhCHH------HHHHHHHHhhcC--------------cEEEEEeCCCC--hhhhccHHHhccce
Confidence 11346779999999975443 234555666532 24566664331 12368899999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
++.++.++.+++..++...+..
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 50
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.93 E-value=3.2e-09 Score=117.83 Aligned_cols=144 Identities=22% Similarity=0.317 Sum_probs=86.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVN 484 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln 484 (583)
.+++||+||||||||+++++++... +...+.++.+ .+.......-.++-+..|. .....++|+||||++
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~----~~~~~~i~~~------~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid 157 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA----GVPFFSISGS------DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEID 157 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc----CCCeeeccHH------HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechh
Confidence 4589999999999999999999865 2333333322 2221110000000111111 112346799999998
Q ss_pred CCCccc-CC----CCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCC
Q psy17974 485 MPKLET-YG----AQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSP 555 (583)
Q Consensus 485 ~p~~d~-yg----~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p 555 (583)
.-.... .| .+..-..+.+++.. .|+.. -.++.+|||+|.|. .++++++| +| ..+.++.|
T Consensus 158 ~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--------~~~v~vI~aTn~~~----~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 158 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--------NTGVIVIAATNRPD----VLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred hhhhccccCcCCccHHHHHHHHHHHhhhccccC--------CCCeEEEEecCChh----hcCHHHhcCCcceEEEEcCCC
Confidence 754322 11 11112233333321 22221 13578999999986 79999998 67 47999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.++...|+..++...
T Consensus 226 d~~~R~~il~~~l~~~ 241 (495)
T TIGR01241 226 DIKGREEILKVHAKNK 241 (495)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988654
No 51
>KOG0652|consensus
Probab=98.93 E-value=2.5e-09 Score=105.22 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=103.7
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~ 464 (583)
++.|...-.|. -++-+...+.||++||||||||.++++.+..- .. +|=....+..+|..|... .+-.
T Consensus 187 iVLpmth~ekF---~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT--~a-------TFLKLAgPQLVQMfIGdG-AkLV 253 (424)
T KOG0652|consen 187 IVLPMTHKEKF---ENLGIRPPKGVLMYGPPGTGKTLMARACAAQT--NA-------TFLKLAGPQLVQMFIGDG-AKLV 253 (424)
T ss_pred hccccccHHHH---HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc--cc-------hHHHhcchHHHhhhhcch-HHHH
Confidence 44554433333 34456677899999999999999999987642 11 122223445566555321 1112
Q ss_pred Ccccc-CCCCCeEEEEecCCCCCCcccC-----CCC----ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 465 KTLLG-APLGKRLAVFVDDVNMPKLETY-----GAQ----PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 465 ~~~~~-p~~gk~~vlfiDDln~p~~d~y-----g~q----~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
+..|. +....+.|+||||++.-....+ |.. ..+|+|.|+- ||-. -.++.+|||+|.-.
T Consensus 254 RDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD---GFss--------~~~vKviAATNRvD- 321 (424)
T KOG0652|consen 254 RDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD---GFSS--------DDRVKVIAATNRVD- 321 (424)
T ss_pred HHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc---CCCC--------ccceEEEeeccccc-
Confidence 22332 3456689999999998665444 322 2588998873 4422 35788999988754
Q ss_pred CCCCCChhhhccc---eEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 535 GRMPLTPRFVRHF---GLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 535 gr~~l~~Rllr~f---~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
-++|.++|-- +-|.+|.|+++...+|.+-+-+.+
T Consensus 322 ---iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM 358 (424)
T KOG0652|consen 322 ---ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM 358 (424)
T ss_pred ---ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc
Confidence 6788888754 359999999999999888775533
No 52
>CHL00176 ftsH cell division protein; Validated
Probab=98.92 E-value=7e-09 Score=117.46 Aligned_cols=143 Identities=22% Similarity=0.310 Sum_probs=89.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVN 484 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln 484 (583)
.++|||+||||||||+++++++... ...++.++.+. +.....+.-..+-+..|. ...+.++|+||||++
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~----~~p~i~is~s~------f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID 285 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA----EVPFFSISGSE------FVEMFVGVGAARVRDLFKKAKENSPCIVFIDEID 285 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----CCCeeeccHHH------HHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecch
Confidence 4589999999999999999998865 33344444332 111110000000011111 123557899999998
Q ss_pred CCCccc----CCC-CChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCC
Q psy17974 485 MPKLET----YGA-QPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSP 555 (583)
Q Consensus 485 ~p~~d~----yg~-q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p 555 (583)
.-.... -|. +..-..|.+++.. .|+-. -.++.+|||+|.|. .++++++| +| ..+.++.|
T Consensus 286 ~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--------~~~ViVIaaTN~~~----~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 286 AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--------NKGVIVIAATNRVD----ILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred hhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--------CCCeeEEEecCchH----hhhhhhhccccCceEEEECCC
Confidence 754321 111 2223445555532 22211 13688999999886 68888987 56 58999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy17974 556 TEDTLKVIFKVRTSP 570 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~ 570 (583)
+.++...|+..+++.
T Consensus 354 d~~~R~~IL~~~l~~ 368 (638)
T CHL00176 354 DREGRLDILKVHARN 368 (638)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998865
No 53
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.92 E-value=7.7e-09 Score=117.99 Aligned_cols=140 Identities=21% Similarity=0.352 Sum_probs=92.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC------CChHHHHHHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ------TSSARTQEILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~------Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
..++++|+||||||||++++.++... ....+.++.+.. .+...+..+++.. ....++|+
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a-----------~~~~P~Ii 248 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----KVPFFTISGSDFVEMFVGVGASRVRDMFEQA-----------KKAAPCII 248 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----CCCEEEEehHHhHHhhhcccHHHHHHHHHHH-----------HhcCCcEE
Confidence 35679999999999999999998875 223444433221 1222222222111 12346899
Q ss_pred EecCCCCCCccc-----CCCCChHHHHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eE
Q psy17974 479 FVDDVNMPKLET-----YGAQPPIELLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GL 549 (583)
Q Consensus 479 fiDDln~p~~d~-----yg~q~~lElLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~v 549 (583)
||||++.-.... .|....-..+.+++ +..|+.+ -+++.+|||+|+|. .++++++| || ..
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--------~~~vivIaaTN~p~----~lD~Al~RpgRfdr~ 316 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------NEGIIVIAATNRPD----VLDPALLRPGRFDRQ 316 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--------CCCeeEEEecCChh----hcCHHHhCCcccceE
Confidence 999998754322 11222233455543 4445543 24689999999987 78999987 77 58
Q ss_pred EEeCCCCHHHHHHHHHHHhccc
Q psy17974 550 LSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+.++.|+.++...|+..++...
T Consensus 317 i~v~~Pd~~~R~~Il~~~~~~~ 338 (644)
T PRK10733 317 VVVGLPDVRGREQILKVHMRRV 338 (644)
T ss_pred EEcCCCCHHHHHHHHHHHhhcC
Confidence 9999999999999999888654
No 54
>CHL00181 cbbX CbbX; Provisional
Probab=98.92 E-value=2.8e-09 Score=110.02 Aligned_cols=144 Identities=23% Similarity=0.286 Sum_probs=86.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCc----eEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTW----AALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~----~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
+.|++|.||||||||++++.++..+.. .++ .++.++ ...+...+.+....+.++.+.... ..|+|||
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~------~~~l~~~~~g~~~~~~~~~l~~a~--ggVLfID 129 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVT------RDDLVGQYIGHTAPKTKEVLKKAM--GGVLFID 129 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEec------HHHHHHHHhccchHHHHHHHHHcc--CCEEEEE
Confidence 567999999999999999999775421 111 123332 222222111111111112221111 2499999
Q ss_pred CCCCCC-cc---cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccce-EEEeCCC
Q psy17974 482 DVNMPK-LE---TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFG-LLSLPSP 555 (583)
Q Consensus 482 Dln~p~-~d---~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~-vi~i~~p 555 (583)
|++... ++ .+| ..+.+.|.++++.+. .++.+|+|.++.. .--..++|.|.|||. +|.++++
T Consensus 130 E~~~l~~~~~~~~~~-~e~~~~L~~~me~~~------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~ 196 (287)
T CHL00181 130 EAYYLYKPDNERDYG-SEAIEILLQVMENQR------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDY 196 (287)
T ss_pred ccchhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCc
Confidence 998742 11 133 345677777777431 3577888755421 111234689999997 7999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.+++..|+..+++..
T Consensus 197 t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 197 TPEELLQIAKIMLEEQ 212 (287)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.92 E-value=1.9e-08 Score=111.30 Aligned_cols=170 Identities=14% Similarity=0.227 Sum_probs=109.0
Q ss_pred eccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 366 PWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 366 ~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
+|.++..+- .+.+++.+.....+...++..+... .+++||+||||||||++++.+++.+ ++.++.+|.
T Consensus 3 ~W~eKyrP~------~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~~ielna 72 (482)
T PRK04195 3 PWVEKYRPK------TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWEVIELNA 72 (482)
T ss_pred CchhhcCCC------CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEEcc
Confidence 677765432 2344555554455556666666533 5789999999999999999999987 466777887
Q ss_pred ccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCe
Q psy17974 444 SAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDV 523 (583)
Q Consensus 444 S~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i 523 (583)
|...+...+...+..... ....++ .++-||+|||++.-... +.....+.|+.+++.. +.
T Consensus 73 sd~r~~~~i~~~i~~~~~--~~sl~~---~~~kvIiIDEaD~L~~~--~d~~~~~aL~~~l~~~--------------~~ 131 (482)
T PRK04195 73 SDQRTADVIERVAGEAAT--SGSLFG---ARRKLILLDEVDGIHGN--EDRGGARAILELIKKA--------------KQ 131 (482)
T ss_pred cccccHHHHHHHHHHhhc--cCcccC---CCCeEEEEecCcccccc--cchhHHHHHHHHHHcC--------------CC
Confidence 766655555554433221 111222 24568899999864331 1112234445555422 23
Q ss_pred EEEEecCCCCCCCCCCCh-hhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 524 VLCTACAPPGGGRMPLTP-RFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 524 ~~iaa~~p~~~gr~~l~~-Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+|++||.+. .+.+ .+.+++..|.++.|+.+++..+...++..
T Consensus 132 ~iIli~n~~~----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 132 PIILTANDPY----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CEEEeccCcc----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 4667777764 3444 56778889999999999999998888753
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.92 E-value=5e-09 Score=111.89 Aligned_cols=144 Identities=20% Similarity=0.301 Sum_probs=86.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVN 484 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln 484 (583)
.+.+||+||||||||++++++++.+. ...+.+.. +......+.. ..+..+..+. .....++|+||||++
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~----~~~~~v~~-----~~l~~~~~g~-~~~~i~~~f~~a~~~~p~il~iDEiD 225 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN----ATFIRVVG-----SELVRKYIGE-GARLVREIFELAKEKAPSIIFIDEID 225 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC----CCEEecch-----HHHHHHhhhH-HHHHHHHHHHHHHhcCCcEEEhhhhh
Confidence 45799999999999999999998762 12222221 1111111111 0011111111 112346799999998
Q ss_pred CCCcccC-----CCCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCC
Q psy17974 485 MPKLETY-----GAQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSP 555 (583)
Q Consensus 485 ~p~~d~y-----g~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p 555 (583)
.-..... |.......+.+++.. .|+ +. ..++.+|||+|.+. .++++++| +| ..+.++.|
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~-~~-------~~~v~vI~ttn~~~----~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGF-DP-------RGNVKVIAATNRPD----ILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred hhccccccCCCCccHHHHHHHHHHHHHhhCC-CC-------CCCEEEEEecCChh----hCChhhcCcccCceEEEeCCc
Confidence 7543221 111122334444432 222 11 23688999999875 68899987 56 47999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.++...|+..+....
T Consensus 294 ~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 294 DFEGRLEILKIHTRKM 309 (364)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999887554
No 57
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.91 E-value=3e-09 Score=125.10 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=94.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChH----HHHHHHHhhhhhhcCccccCCCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSA----RTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~----~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
.+.+++|+||||||||++++.++..+... .++.+..++.++..... .+.+.+..-+..-. ..++
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~------~~~~ 266 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT------KSEG 266 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH------hcCC
Confidence 44699999999999999999998875321 13455555554432111 11111211122111 1135
Q ss_pred eEEEEecCCCCCCcc--cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC-CCCCChhhhccceEEE
Q psy17974 475 RLAVFVDDVNMPKLE--TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG-RMPLTPRFVRHFGLLS 551 (583)
Q Consensus 475 ~~vlfiDDln~p~~d--~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g-r~~l~~Rllr~f~vi~ 551 (583)
+.|+||||+|.-... .-|+.....+|+..+.. .++++|||++++.-- -..+++.+.|+|.+|.
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--------------g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~ 332 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--------------GELHCIGATTLDEYRKYIEKDAALERRFQPVF 332 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--------------CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEE
Confidence 789999999975321 12333345666655442 258899999886422 2468999999999999
Q ss_pred eCCCCHHHHHHHHHHHhccc
Q psy17974 552 LPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~~ 571 (583)
++.|+.++...|+..+...+
T Consensus 333 v~~p~~~~~~~iL~~~~~~~ 352 (852)
T TIGR03346 333 VDEPTVEDTISILRGLKERY 352 (852)
T ss_pred eCCCCHHHHHHHHHHHHHHh
Confidence 99999999999998775443
No 58
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.91 E-value=3.3e-09 Score=127.53 Aligned_cols=153 Identities=9% Similarity=0.143 Sum_probs=92.6
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh---------------HH------H-----
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS---------------AR------T----- 452 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~---------------~~------l----- 452 (583)
+..-+...+.|||+||||||||.+|++++.+. ....+.+..|.-... +. +
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 34445667899999999999999999999864 345555544432210 00 0
Q ss_pred ---HHH-------HHhhhhh-hcCcccc-CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEee
Q psy17974 453 ---QEI-------LEGKLDK-RTKTLLG-APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTL 520 (583)
Q Consensus 453 ---q~~-------ie~~l~~-~~~~~~~-p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i 520 (583)
.++ +...... +-+..|. +....+|||||||||.-..+.-..+.+..+|.. +| |.-+. ..-
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLne-LD--g~~~~-----~s~ 1770 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNS-LS--RDCER-----CST 1770 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHH-hc--ccccc-----CCC
Confidence 000 0000000 0111232 234568999999999876552111222333332 22 21111 112
Q ss_pred cCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCCCCHHHHHHHHHHH
Q psy17974 521 QDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 521 ~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~p~~~sl~~I~~~~ 567 (583)
+++.+|||+|.|. .|+|+++| ||. .|.++.|+...-..|+..+
T Consensus 1771 ~~VIVIAATNRPD----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~IL 1816 (2281)
T CHL00206 1771 RNILVIASTHIPQ----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTL 1816 (2281)
T ss_pred CCEEEEEeCCCcc----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHH
Confidence 4789999999997 89999999 885 7999999988777777654
No 59
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.91 E-value=4e-09 Score=107.47 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=83.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhccc---CCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLAS---NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~---~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..|++|+||||||||++++.+++.+... ....++.++.+. +.....+....+.+..+.... ..|+||||
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~------l~~~~~g~~~~~~~~~~~~a~--~~VL~IDE 113 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD------LVGEYIGHTAQKTREVIKKAL--GGVLFIDE 113 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH------hhhhhccchHHHHHHHHHhcc--CCEEEEec
Confidence 3589999999999999999998764211 111222222222 111000000111111111111 24899999
Q ss_pred CCCCCccc---CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccc-eEEEeCCCCH
Q psy17974 483 VNMPKLET---YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHF-GLLSLPSPTE 557 (583)
Q Consensus 483 ln~p~~d~---yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f-~vi~i~~p~~ 557 (583)
++....+. +| ...++.|.+.++.+. .++.+++|..+.. ..-..++|++.++| ..+.++.++.
T Consensus 114 ~~~L~~~~~~~~~-~~~i~~Ll~~~e~~~------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 114 AYSLARGGEKDFG-KEAIDTLVKGMEDNR------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred hhhhccCCccchH-HHHHHHHHHHHhccC------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 99754321 12 123454555555321 3466776655433 12235789999999 4699999999
Q ss_pred HHHHHHHHHHhccc
Q psy17974 558 DTLKVIFKVRTSPG 571 (583)
Q Consensus 558 ~sl~~I~~~~l~~~ 571 (583)
+++..|+..++...
T Consensus 181 ~el~~Il~~~~~~~ 194 (261)
T TIGR02881 181 EELMEIAERMVKER 194 (261)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988753
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.91 E-value=1.2e-08 Score=106.17 Aligned_cols=137 Identities=23% Similarity=0.229 Sum_probs=90.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||||||||++++.+++.+. . ....+.-+.......+...+.. .+...++||||++..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~-~---~~~~~~~~~~~~~~~l~~~l~~-------------~~~~~vl~iDEi~~l 93 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG-V---NLKITSGPALEKPGDLAAILTN-------------LEEGDVLFIDEIHRL 93 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-C---CEEEeccchhcCchhHHHHHHh-------------cccCCEEEEehHhhh
Confidence 4699999999999999999998762 1 2222222222233333332211 122358999999975
Q ss_pred CcccCCCCChHHHHHHHHHhCCee---ec--CCCeeE-eecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLY---DR--DKMFWK-TLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDT 559 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~y---d~--~~~~~~-~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~s 559 (583)
..+ ..|.|+.+++..+.. +. ....+. ...++.+++|++.+. .+++++.+||. ++.++.++.++
T Consensus 94 ~~~------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~----~l~~~l~sR~~~~~~l~~l~~~e 163 (305)
T TIGR00635 94 SPA------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG----MLTSPLRDRFGIILRLEFYTVEE 163 (305)
T ss_pred CHH------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc----ccCHHHHhhcceEEEeCCCCHHH
Confidence 543 467888888765421 10 011222 234578888888764 68888988884 67999999999
Q ss_pred HHHHHHHHhcc
Q psy17974 560 LKVIFKVRTSP 570 (583)
Q Consensus 560 l~~I~~~~l~~ 570 (583)
+..|+......
T Consensus 164 ~~~il~~~~~~ 174 (305)
T TIGR00635 164 LAEIVSRSAGL 174 (305)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 61
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.91 E-value=9.4e-09 Score=103.11 Aligned_cols=154 Identities=12% Similarity=0.158 Sum_probs=92.4
Q ss_pred cceeeCchhhhHHHHHHHHHh--cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLL--VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD 461 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~--~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~ 461 (583)
+-+++..... ....+..+.. .+.+++|+||+|||||++++++.+... ..+..+.+++++...+. ..+.+ ..++
T Consensus 22 d~f~~~~n~~-a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~~~~~~~~--~~~~~-~~~~ 96 (235)
T PRK08084 22 ASFYPGDNDS-LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVPLDKRAWF--VPEVL-EGME 96 (235)
T ss_pred cccccCccHH-HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEHHHHhhh--hHHHH-HHhh
Confidence 3455553333 3344444443 346899999999999999999887653 23456667776552211 11111 1111
Q ss_pred hhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC-CCCCCCCCCC
Q psy17974 462 KRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA-PPGGGRMPLT 540 (583)
Q Consensus 462 ~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~-p~~~gr~~l~ 540 (583)
. .-+++|||++....++-..+....+++...+.| ..++|.|++ ||. .-..+.
T Consensus 97 ~------------~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g--------------~~~li~ts~~~p~-~l~~~~ 149 (235)
T PRK08084 97 Q------------LSLVCIDNIECIAGDELWEMAIFDLYNRILESG--------------RTRLLITGDRPPR-QLNLGL 149 (235)
T ss_pred h------------CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC--------------CCeEEEeCCCChH-HcCccc
Confidence 0 127899999976543211122345555555533 223455444 443 222467
Q ss_pred hhhhccc---eEEEeCCCCHHHHHHHHHHHhc
Q psy17974 541 PRFVRHF---GLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 541 ~Rllr~f---~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+++.+|+ .++.+.+|+.+++..|......
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 9999999 7999999999999999877443
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.90 E-value=2e-08 Score=90.69 Aligned_cols=129 Identities=20% Similarity=0.166 Sum_probs=76.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh---hhhhhcCccccCCCCCeEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG---KLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~---~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
.+.+++++||||||||++++.+++.+. .....++.++++...........++. .... ......++.++++|
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~lilD 91 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLF-----ELAEKAKPGVLFID 91 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHH-----HhhccCCCeEEEEe
Confidence 378999999999999999999998763 23456666766654443333322221 1100 01123446789999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeC
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLP 553 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~ 553 (583)
|++....+ ..+-+.++++....+. ....++.+|++++++.. ..+.+++.++| ..+.++
T Consensus 92 e~~~~~~~------~~~~~~~~i~~~~~~~------~~~~~~~ii~~~~~~~~--~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 92 EIDSLSRG------AQNALLRVLETLNDLR------IDRENVRVIGATNRPLL--GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ChhhhhHH------HHHHHHHHHHhcCcee------ccCCCeEEEEecCcccc--CCcChhHHhhhccEeecC
Confidence 99976332 2233344444322211 12357888999887653 34666777777 455554
No 63
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.89 E-value=1.6e-08 Score=105.65 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=91.2
Q ss_pred HHHHHhcCC--ce-EEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCe
Q psy17974 399 MEKLLLVNH--PV-MFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 399 l~~~l~~~~--~v-LL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
+..+++.++ ++ |++||||+|||++++.+.+.+. ..+..++++. ...+.+++.+....... |..+.+
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~----~~~~~i~~~~-~~~~~i~~~l~~~~~~~------~~~~~~ 101 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG----AEVLFVNGSD-CRIDFVRNRLTRFASTV------SLTGGG 101 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----ccceEeccCc-ccHHHHHHHHHHHHHhh------cccCCC
Confidence 344444553 34 4489999999999999988752 2455677766 33333333332222111 111334
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCC
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSP 555 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p 555 (583)
-|++|||++.-.. ....+.|+.+++.. -.++.+|.+++.+. .+.+++.++|.++.++.|
T Consensus 102 ~vliiDe~d~l~~-----~~~~~~L~~~le~~------------~~~~~~Ilt~n~~~----~l~~~l~sR~~~i~~~~p 160 (316)
T PHA02544 102 KVIIIDEFDRLGL-----ADAQRHLRSFMEAY------------SKNCSFIITANNKN----GIIEPLRSRCRVIDFGVP 160 (316)
T ss_pred eEEEEECcccccC-----HHHHHHHHHHHHhc------------CCCceEEEEcCChh----hchHHHHhhceEEEeCCC
Confidence 5889999976422 12457788887742 13567888888654 688999999999999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy17974 556 TEDTLKVIFKVRTSP 570 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~ 570 (583)
+.+....|...++.+
T Consensus 161 ~~~~~~~il~~~~~~ 175 (316)
T PHA02544 161 TKEEQIEMMKQMIVR 175 (316)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999888777665443
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.88 E-value=3.5e-09 Score=109.16 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=86.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccC---CceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASN---TWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~---~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
+.|++|.||||||||++++.++..+.... .-.++.++.+ .+...+.+.-..+.++.+... ...|+||||
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~------~l~~~~~g~~~~~~~~~~~~a--~~gvL~iDE 129 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD------DLVGQYIGHTAPKTKEILKRA--MGGVLFIDE 129 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH------HHhHhhcccchHHHHHHHHHc--cCcEEEEec
Confidence 56899999999999999988776552111 1123333321 111111111011111111111 225999999
Q ss_pred CCCCCcc----cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccce-EEEeCCCC
Q psy17974 483 VNMPKLE----TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFG-LLSLPSPT 556 (583)
Q Consensus 483 ln~p~~d----~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~-vi~i~~p~ 556 (583)
++.-... .++ +...+.|-++++.+. .++.+|+|.+++. ..-..++|.|.++|. .|.+|.++
T Consensus 130 i~~L~~~~~~~~~~-~~~~~~Ll~~le~~~------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 130 AYYLYRPDNERDYG-QEAIEILLQVMENQR------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred hhhhccCCCccchH-HHHHHHHHHHHhcCC------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 9854211 122 234556666776431 4678888876542 112246899999995 79999999
Q ss_pred HHHHHHHHHHHhccc
Q psy17974 557 EDTLKVIFKVRTSPG 571 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~ 571 (583)
.+++..|+..+++..
T Consensus 197 ~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 197 EAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 65
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.84 E-value=1.6e-08 Score=111.33 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=94.8
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh--------------hc
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK--------------RT 464 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~--------------~~ 464 (583)
+...+..|++++|+||+|||||++++.+..-+.....- ..+..+.-.+...... ....+.+ --
T Consensus 203 l~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~--e~le~~~i~s~~g~~~-~~~~~~~rPfr~ph~~~s~~~l~ 279 (506)
T PRK09862 203 LEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE--EALESAAILSLVNAES-VQKQWRQRPFRSPHHSASLTAMV 279 (506)
T ss_pred hheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCc--EEEecchhhhhhcccc-ccCCcCCCCccCCCccchHHHHh
Confidence 45567789999999999999999999876644211110 0111111100000000 0000000 00
Q ss_pred CccccCC-----CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCCCCC--
Q psy17974 465 KTLLGAP-----LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPGGGR-- 536 (583)
Q Consensus 465 ~~~~~p~-----~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~~gr-- 536 (583)
||-..+. .....++|+||++.... ..++.|||.+|.|.++ .+.........++++||||||...|.
T Consensus 280 GGg~~~~pG~l~~A~gGvLfLDEi~e~~~------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 280 GGGAIPGPGEISLAHNGVLFLDELPEFER------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred CCCceehhhHhhhccCCEEecCCchhCCH------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 1111111 22356999999986544 3789999999999987 45555666678999999999964332
Q ss_pred ---------------CCCChhhhccceE-EEeCCCCHHHH
Q psy17974 537 ---------------MPLTPRFVRHFGL-LSLPSPTEDTL 560 (583)
Q Consensus 537 ---------------~~l~~Rllr~f~v-i~i~~p~~~sl 560 (583)
..++..++.||.+ +.+++|+.+.+
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 2488899999985 89999876643
No 66
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.84 E-value=1.8e-08 Score=115.68 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=104.5
Q ss_pred cceEEEECCCCceeeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHh
Q psy17974 352 LRSYFVSKDTKQLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 352 vfdy~~d~~~~~w~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+|++..+.....-.||.+++.+..+ .+ +|--...+.-...+..+++.+ .+++|+||||||||++++.+.+.
T Consensus 3 lf~~~~~~~~~~~~PLaek~RP~tl------dd-~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 3 LFAFHGEQMSQSEAPLADRLRPRTL------EE-FVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred chhhcccccccccCChHHhcCCCcH------HH-hcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444333333333478776643222 22 222222232233445555555 38999999999999999999886
Q ss_pred hcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe
Q psy17974 430 LLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL 509 (583)
Q Consensus 430 l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~ 509 (583)
.. .....++.+. .....+...++.-.+. .+..+++.++||||+|.-..+. .+.|+..++.|
T Consensus 76 ~~----~~f~~lna~~-~~i~dir~~i~~a~~~------l~~~~~~~IL~IDEIh~Ln~~q------QdaLL~~lE~g-- 136 (725)
T PRK13341 76 TR----AHFSSLNAVL-AGVKDLRAEVDRAKER------LERHGKRTILFIDEVHRFNKAQ------QDALLPWVENG-- 136 (725)
T ss_pred hc----Ccceeehhhh-hhhHHHHHHHHHHHHH------hhhcCCceEEEEeChhhCCHHH------HHHHHHHhcCc--
Confidence 52 1233344332 1122333333221110 0112356789999998754431 34555566533
Q ss_pred eecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 510 YDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 510 yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+|+++++.. ...+.+++.+|+.++.+++++.+++..|...++..
T Consensus 137 ------------~IiLI~aTTenp--~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 137 ------------TITLIGATTENP--YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred ------------eEEEEEecCCCh--HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHH
Confidence 256777665421 13578999999999999999999999999998863
No 67
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.83 E-value=5.5e-09 Score=122.52 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=94.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCC----hHHHHHHHHhhhhhhcCccccCCCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTS----SARTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt----~~~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
...+++|+||||||||++++.++..+... .+..+..++.+.... ...+.+-+..-++.- ...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~-------~~~~ 271 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI-------QENN 271 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH-------HhcC
Confidence 45699999999999999999998765211 134555565543211 111222222222211 1124
Q ss_pred eEEEEecCCCCCCcc--cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC-CCCCChhhhccceEEE
Q psy17974 475 RLAVFVDDVNMPKLE--TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG-RMPLTPRFVRHFGLLS 551 (583)
Q Consensus 475 ~~vlfiDDln~p~~d--~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g-r~~l~~Rllr~f~vi~ 551 (583)
++|+||||+|.--.. ..|...+..+|+..+..| ++++|||++++.-- ....++.|.|+|.+|.
T Consensus 272 ~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--------------~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~ 337 (821)
T CHL00095 272 NIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--------------ELQCIGATTLDEYRKHIEKDPALERRFQPVY 337 (821)
T ss_pred CeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--------------CcEEEEeCCHHHHHHHHhcCHHHHhcceEEe
Confidence 679999999964322 124445667777766643 57899999886421 2357899999999999
Q ss_pred eCCCCHHHHHHHHHHHhcc
Q psy17974 552 LPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~ 570 (583)
++.|+.++...|+..+...
T Consensus 338 v~ep~~~e~~aILr~l~~~ 356 (821)
T CHL00095 338 VGEPSVEETIEILFGLRSR 356 (821)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 9999999999998876543
No 68
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.83 E-value=9.3e-09 Score=119.41 Aligned_cols=146 Identities=23% Similarity=0.359 Sum_probs=89.7
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDD 482 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDD 482 (583)
...+.+||+||||||||+++++++..+ +...+.+..+...+ +.+ +.-++.-+.+|. +....++|+||||
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~-----~~v-Gese~~i~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILS-----KWV-GESEKAIREIFRKARQAAPAIIFFDE 554 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhh-----ccc-CcHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 345679999999999999999999876 23344443322111 000 001111111221 2234578999999
Q ss_pred CCCCCcccC--CCCCh-HHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCCC
Q psy17974 483 VNMPKLETY--GAQPP-IELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPSP 555 (583)
Q Consensus 483 ln~p~~d~y--g~q~~-lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~p 555 (583)
++.-....- +.... -.++.|++.. .|.- ...++.+|||+|.|. .+++.++| +|. +++++.|
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~--------~~~~v~vI~aTn~~~----~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ--------ELSNVVVIAATNRPD----ILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhccc--------CCCCEEEEEeCCChh----hCCHhhcCCCccceEEEeCCc
Confidence 986433221 11111 2234444321 1221 124789999999986 79999998 885 8999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.++...|+..+.+..
T Consensus 623 d~~~R~~i~~~~~~~~ 638 (733)
T TIGR01243 623 DEEARKEIFKIHTRSM 638 (733)
T ss_pred CHHHHHHHHHHHhcCC
Confidence 9999999998776543
No 69
>KOG0739|consensus
Probab=98.83 E-value=6.6e-09 Score=104.16 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=91.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVNM 485 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln~ 485 (583)
+.+||+||||||||.++++++.+- + ..++ |- +++++..--.+.-++-.++.|. ++..|+.|||||||+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEA----n--STFF--Sv--SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEA----N--STFF--SV--SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhc----C--CceE--Ee--ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 378999999999999999998864 1 1122 22 2233332222233444445553 4578899999999996
Q ss_pred CCcccC-CCCC-----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHH
Q psy17974 486 PKLETY-GAQP-----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTED 558 (583)
Q Consensus 486 p~~d~y-g~q~-----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~ 558 (583)
.-.... |... --|||=|+- |.=. .-..+.++||+|-|- .++..+.|||- -|+||.|+..
T Consensus 237 lcg~r~enEseasRRIKTEfLVQMq---GVG~-------d~~gvLVLgATNiPw----~LDsAIRRRFekRIYIPLPe~~ 302 (439)
T KOG0739|consen 237 LCGSRSENESEASRRIKTEFLVQMQ---GVGN-------DNDGVLVLGATNIPW----VLDSAIRRRFEKRIYIPLPEAH 302 (439)
T ss_pred hccCCCCCchHHHHHHHHHHHHhhh---cccc-------CCCceEEEecCCCch----hHHHHHHHHhhcceeccCCcHH
Confidence 432211 1111 135665553 3221 124688999999987 79999999996 7999999999
Q ss_pred HHHHHHHHHhc
Q psy17974 559 TLKVIFKVRTS 569 (583)
Q Consensus 559 sl~~I~~~~l~ 569 (583)
...++|.-.+.
T Consensus 303 AR~~MF~lhlG 313 (439)
T KOG0739|consen 303 ARARMFKLHLG 313 (439)
T ss_pred HhhhhheeccC
Confidence 99998877664
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.82 E-value=2.2e-08 Score=116.12 Aligned_cols=154 Identities=18% Similarity=0.168 Sum_probs=100.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc---ccCCCCCeEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTL---LGAPLGKRLAVFVD 481 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~---~~p~~gk~~vlfiD 481 (583)
.+..++|+||||+|||++++.++..+. .....++++...+...+...-........+.. +...+...-|+++|
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~----~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villD 423 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATG----RKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEE
Confidence 356799999999999999999998762 34566777665554333221100000000000 00111123478999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhC---CeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHH
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFG---GLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTED 558 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~---g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~ 558 (583)
|++-...+.-| .|...|-+++|-+ .|-|.--..-..+.++.||||+|.- .|+++|+.|+.+|.+..++.+
T Consensus 424 Eidk~~~~~~g--~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-----~i~~aLl~R~~ii~~~~~t~e 496 (784)
T PRK10787 424 EIDKMSSDMRG--DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-----NIPAPLLDRMEVIRLSGYTED 496 (784)
T ss_pred ChhhcccccCC--CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-----CCCHHHhcceeeeecCCCCHH
Confidence 99987766433 3567777777753 2322211111245789999988653 499999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy17974 559 TLKVIFKVRTS 569 (583)
Q Consensus 559 sl~~I~~~~l~ 569 (583)
++..|...++.
T Consensus 497 ek~~Ia~~~L~ 507 (784)
T PRK10787 497 EKLNIAKRHLL 507 (784)
T ss_pred HHHHHHHHhhh
Confidence 99999999885
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.79 E-value=6.5e-08 Score=106.25 Aligned_cols=142 Identities=18% Similarity=0.251 Sum_probs=91.8
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..++ .+||+||||||||++++.+++.+.... ...+..++-+.....+.+.++
T Consensus 26 L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i 105 (472)
T PRK14962 26 IINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKI 105 (472)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHH
Confidence 444555553 379999999999999999988763110 112333433323334444433
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
. .... +.|..+++-|++|||+|+-..+ ....|...++.. ...+.+|+|++.|.
T Consensus 106 ~-~~~~------~~p~~~~~kVvIIDE~h~Lt~~------a~~~LLk~LE~p------------~~~vv~Ilattn~~-- 158 (472)
T PRK14962 106 R-DAVG------YRPMEGKYKVYIIDEVHMLTKE------AFNALLKTLEEP------------PSHVVFVLATTNLE-- 158 (472)
T ss_pred H-HHHh------hChhcCCeEEEEEEChHHhHHH------HHHHHHHHHHhC------------CCcEEEEEEeCChH--
Confidence 2 2221 2344566779999999986543 234445555521 12456666666443
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+++++.+|+.++.+..++.+++..+...+..
T Consensus 159 --kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 159 --KVPPTIISRCQVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred --hhhHHHhcCcEEEEECCccHHHHHHHHHHHHH
Confidence 68999999999999999999999998888775
No 72
>KOG0735|consensus
Probab=98.79 E-value=3.2e-08 Score=109.00 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=99.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+....++||+||||||||.++.+++.+. ++.++ +.-.|+.+-+.|.. -++..+..|. +...++||+|+|
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~----~~~fi-----svKGPElL~KyIGa-SEq~vR~lF~rA~~a~PCiLFFD 767 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNS----NLRFI-----SVKGPELLSKYIGA-SEQNVRDLFERAQSAKPCILFFD 767 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhC----CeeEE-----EecCHHHHHHHhcc-cHHHHHHHHHHhhccCCeEEEec
Confidence 4456799999999999999999998864 22332 22456665555432 2223334443 457889999999
Q ss_pred CCCCCCcccCC--CCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc--c-eEEEeCCC
Q psy17974 482 DVNMPKLETYG--AQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH--F-GLLSLPSP 555 (583)
Q Consensus 482 Dln~p~~d~yg--~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~--f-~vi~i~~p 555 (583)
|++.-.+.+.. |.-.=-...|++.. .|- -.+.++.++||+..|. -|+|+|+|- + ..+++|.|
T Consensus 768 EfdSiAPkRGhDsTGVTDRVVNQlLTelDG~--------Egl~GV~i~aaTsRpd----liDpALLRpGRlD~~v~C~~P 835 (952)
T KOG0735|consen 768 EFDSIAPKRGHDSTGVTDRVVNQLLTELDGA--------EGLDGVYILAATSRPD----LIDPALLRPGRLDKLVYCPLP 835 (952)
T ss_pred cccccCcccCCCCCCchHHHHHHHHHhhccc--------cccceEEEEEecCCcc----ccCHhhcCCCccceeeeCCCC
Confidence 99986654311 11122334444431 111 1256788999988876 789999984 3 36999999
Q ss_pred CHHHHHHHHHHHhcccccC
Q psy17974 556 TEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~l~~ 574 (583)
++.+...|++.+-+.....
T Consensus 836 ~~~eRl~il~~ls~s~~~~ 854 (952)
T KOG0735|consen 836 DEPERLEILQVLSNSLLKD 854 (952)
T ss_pred CcHHHHHHHHHHhhccCCc
Confidence 9999999999987755543
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.79 E-value=1.2e-07 Score=100.96 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhccc-C----CceEEEEEeccCCChHHHHHHHHhhhhh---
Q psy17974 393 IRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLAS-N----TWAALTINFSAQTSSARTQEILEGKLDK--- 462 (583)
Q Consensus 393 ~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~-~----~~~~~~i~fS~~Tt~~~lq~~ie~~l~~--- 462 (583)
.+....+...+..+ .+++++||||||||++++.+++.+... . .+.++.+|+....+...+...+-..+..
T Consensus 25 ~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~ 104 (365)
T TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGE 104 (365)
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 34445555555543 579999999999999999998865311 1 1567788887766655544333344421
Q ss_pred h--cCc---------cc--cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 463 R--TKT---------LL--GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 463 ~--~~~---------~~--~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
. ..+ .+ -...+++.|++|||++.-... .+. +|-++.. |++.... .-.++.+|+++
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---~~~---~L~~l~~---~~~~~~~---~~~~v~lI~i~ 172 (365)
T TIGR02928 105 EVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---DDD---LLYQLSR---ARSNGDL---DNAKVGVIGIS 172 (365)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---CcH---HHHhHhc---cccccCC---CCCeEEEEEEE
Confidence 0 000 00 112456789999999986421 122 3333332 2111110 01357888888
Q ss_pred CCCCCCCCCCChhhhccc--eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 530 APPGGGRMPLTPRFVRHF--GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f--~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
|.+.- ...+.+|+.++| ..+.+++++.+++..|....++.
T Consensus 173 n~~~~-~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~ 214 (365)
T TIGR02928 173 NDLKF-RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEK 214 (365)
T ss_pred CCcch-HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 87641 235788888888 47999999999999999988863
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=7e-08 Score=104.95 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=93.1
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC------------------C--ceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN------------------T--WAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~------------------~--~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..++ .+||+||+|||||++++.+++.+.-.. + ..++.++-+.....+.+.++
T Consensus 30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL 109 (484)
T PRK14956 30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIREL 109 (484)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHH
Confidence 444455543 379999999999999999998763110 0 01222222222333444333
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ ++ .+.|..|++-|++|||+|+-..+ ..+.|...+|.- ...+.||.|++.+.
T Consensus 110 ~e-~l------~~~p~~g~~KV~IIDEah~Ls~~------A~NALLKtLEEP------------p~~viFILaTte~~-- 162 (484)
T PRK14956 110 RD-NV------KFAPMGGKYKVYIIDEVHMLTDQ------SFNALLKTLEEP------------PAHIVFILATTEFH-- 162 (484)
T ss_pred HH-HH------HhhhhcCCCEEEEEechhhcCHH------HHHHHHHHhhcC------------CCceEEEeecCChh--
Confidence 22 11 13455667779999999998665 233334444421 24677888877654
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|.+++++|+..+.+..++.+++......++..
T Consensus 163 --kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 163 --KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred --hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999998887777653
No 75
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=1.1e-08 Score=97.45 Aligned_cols=123 Identities=19% Similarity=0.257 Sum_probs=78.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.++||+||+|||||.+++.+.+.+.-...-..+.++++..+........+. ++.....+..+. ....|||+||+.-+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~-~l~~~~~~~v~~--~~~gVVllDEidKa 80 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVS-KLLGSPPGYVGA--EEGGVVLLDEIDKA 80 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCH-HHHHHTTCHHHH--HHHTEEEEETGGGC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhh-hhhhcccceeec--cchhhhhhHHHhhc
Confidence 478999999999999999999887312345788999999888333222211 111111111110 01129999999887
Q ss_pred CcccCCC-----CChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 487 KLETYGA-----QPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 487 ~~d~yg~-----q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
.+..-++ ..+...|-|++|.|-+.|... .-+...++.||+|+|-.+
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g-~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYG-RTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTC-CEEEGTTEEEEEEESSST
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccc-eEEEeCCceEEEeccccc
Confidence 6511110 125677789999776666443 567789999999988643
No 76
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.76 E-value=1.1e-07 Score=103.27 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=84.1
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCC---
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLG--- 473 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~g--- 473 (583)
++...+..+.||||.||||||||++++.+.........+....+.|+ ++.++-+.+.-+ ..+..+.|. ...|
T Consensus 31 lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft---tp~DLfG~l~i~-~~~~~g~f~r~~~G~L~ 106 (498)
T PRK13531 31 LCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS---TPEEVFGPLSIQ-ALKDEGRYQRLTSGYLP 106 (498)
T ss_pred HHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec---CcHHhcCcHHHh-hhhhcCchhhhcCCccc
Confidence 34556678999999999999999999999886532222334444443 344433221000 001122221 1111
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEe
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSL 552 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i 552 (583)
.--++|+||||-..+. ....|=+.++.+.++. .. .-..+..-.+++|+|+... ....-+.+.-||. .+.+
T Consensus 107 ~A~lLfLDEI~rasp~------~QsaLLeam~Er~~t~-g~-~~~~lp~rfiv~ATN~LPE-~g~~leAL~DRFliri~v 177 (498)
T PRK13531 107 EAEIVFLDEIWKAGPA------ILNTLLTAINERRFRN-GA-HEEKIPMRLLVTASNELPE-ADSSLEALYDRMLIRLWL 177 (498)
T ss_pred cccEEeecccccCCHH------HHHHHHHHHHhCeEec-CC-eEEeCCCcEEEEECCCCcc-cCCchHHhHhhEEEEEEC
Confidence 1228999999965544 2333334566566554 22 2233333334555565221 1122235666665 4899
Q ss_pred CCCC-HHHHHHHHHH
Q psy17974 553 PSPT-EDTLKVIFKV 566 (583)
Q Consensus 553 ~~p~-~~sl~~I~~~ 566 (583)
|+|+ .++...|...
T Consensus 178 p~l~~~~~e~~lL~~ 192 (498)
T PRK13531 178 DKVQDKANFRSMLTS 192 (498)
T ss_pred CCCCchHHHHHHHHc
Confidence 9997 4665656544
No 77
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.75 E-value=6.3e-08 Score=97.00 Aligned_cols=133 Identities=24% Similarity=0.237 Sum_probs=90.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPK 487 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~ 487 (583)
||||+||||.|||+++.-+++++. .......-..--.+.++-.++ +.++. .-|+||||||...
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emg----vn~k~tsGp~leK~gDlaaiL-t~Le~------------~DVLFIDEIHrl~ 116 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELG----VNLKITSGPALEKPGDLAAIL-TNLEE------------GDVLFIDEIHRLS 116 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhc----CCeEecccccccChhhHHHHH-hcCCc------------CCeEEEehhhhcC
Confidence 899999999999999999999883 111111111122344444433 22332 3489999999865
Q ss_pred cccCCCCChHHHHHHHHHhCCeeec---C----CCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHHH
Q psy17974 488 LETYGAQPPIELLRQFLDFGGLYDR---D----KMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDT 559 (583)
Q Consensus 488 ~d~yg~q~~lElLRq~ld~~g~yd~---~----~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~s 559 (583)
+. +-|.|--.+|.- ..|. + +.--..+..+++|||++..| .++..|..||- +.++.+.+.++
T Consensus 117 ~~------vEE~LYpaMEDf-~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G----~lt~PLrdRFGi~~rlefY~~~e 185 (332)
T COG2255 117 PA------VEEVLYPAMEDF-RLDIIIGKGPAARSIRLDLPPFTLIGATTRAG----MLTNPLRDRFGIIQRLEFYTVEE 185 (332)
T ss_pred hh------HHHHhhhhhhhe-eEEEEEccCCccceEeccCCCeeEeeeccccc----cccchhHHhcCCeeeeecCCHHH
Confidence 43 567777666531 1121 1 11223467899999998887 78888988996 68999999999
Q ss_pred HHHHHHHHh
Q psy17974 560 LKVIFKVRT 568 (583)
Q Consensus 560 l~~I~~~~l 568 (583)
|..|...--
T Consensus 186 L~~Iv~r~a 194 (332)
T COG2255 186 LEEIVKRSA 194 (332)
T ss_pred HHHHHHHHH
Confidence 999987764
No 78
>KOG0740|consensus
Probab=98.74 E-value=1.4e-08 Score=108.31 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=93.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVNM 485 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln~ 485 (583)
+.+||.||||+|||+++++++.+. . ..+++.|+....+. .-+.-++--+.+|. +...++.|+||||++.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~----~--atff~iSassLtsK----~~Ge~eK~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES----G--ATFFNISASSLTSK----YVGESEKLVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh----c--ceEeeccHHHhhhh----ccChHHHHHHHHHHHHHhcCCeEEEechhHH
Confidence 578999999999999999999865 1 33445554321111 11111221222221 3455678999999997
Q ss_pred CCcccC-CCCC-----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHH
Q psy17974 486 PKLETY-GAQP-----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTED 558 (583)
Q Consensus 486 p~~d~y-g~q~-----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~ 558 (583)
.-..+- +.+. -.|+|=|+.- .-... =.++.++||+|.|- .++..+.|+|. ++++|.|+.+
T Consensus 257 lls~Rs~~e~e~srr~ktefLiq~~~---~~s~~------~drvlvigaTN~P~----e~Dea~~Rrf~kr~yiplPd~e 323 (428)
T KOG0740|consen 257 LLSKRSDNEHESSRRLKTEFLLQFDG---KNSAP------DDRVLVIGATNRPW----ELDEAARRRFVKRLYIPLPDYE 323 (428)
T ss_pred HHhhcCCcccccchhhhhHHHhhhcc---ccCCC------CCeEEEEecCCCch----HHHHHHHHHhhceeeecCCCHH
Confidence 543321 1111 2466656542 11111 12689999999996 89999999997 8999999999
Q ss_pred HHHHHHHHHhccc
Q psy17974 559 TLKVIFKVRTSPG 571 (583)
Q Consensus 559 sl~~I~~~~l~~~ 571 (583)
+...++..+|..+
T Consensus 324 tr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 324 TRSLLWKQLLKEQ 336 (428)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999877
No 79
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.74 E-value=2.4e-08 Score=115.13 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=105.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCccccC--CCCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLGA--PLGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~p--~~gk~~vlfiDD 482 (583)
++||+||||||||.+++.++..+. ...+.+++|..+....+.+++... .....++.+.. ......|+|+||
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~----~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDE 565 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALG----IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDE 565 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC----CCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEecc
Confidence 489999999999999999988772 356778888765543333333211 11111111110 012347999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-------CC--------------CCCCCh
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-------GG--------------RMPLTP 541 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-------~g--------------r~~l~~ 541 (583)
++...++ +...|.|++|.|-+.|.. ..-....++.+|+|+|... -| +..+.|
T Consensus 566 ieka~~~------v~~~LLq~ld~G~ltd~~-g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~p 638 (758)
T PRK11034 566 IEKAHPD------VFNLLLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP 638 (758)
T ss_pred HhhhhHH------HHHHHHHHHhcCeeecCC-CceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCH
Confidence 9988765 678999999987776643 3345667888999988431 01 134778
Q ss_pred hhhccce-EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 542 RFVRHFG-LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 542 Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|+.|+. ++.+++.+.+++..|....+..
T Consensus 639 efl~Rid~ii~f~~L~~~~l~~I~~~~l~~ 668 (758)
T PRK11034 639 EFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_pred HHHccCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 8999995 8999999999999999887753
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.73 E-value=1.7e-07 Score=98.59 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=89.1
Q ss_pred HHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccC-CceEEEEEeccCCCh--HHH--------------------H
Q psy17974 399 MEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASN-TWAALTINFSAQTSS--ART--------------------Q 453 (583)
Q Consensus 399 l~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~~i~fS~~Tt~--~~l--------------------q 453 (583)
+..+++.+. +++|+||||||||++++.+++.+.... ....+.++++..... ..+ .
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKI 106 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchH
Confidence 555667776 899999999999999999988763221 122445555431100 000 0
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
+.+..-+.. ...+.|..+.+-+++|||++.-..+ ..+.|+.+++... .++.+|.+++.+.
T Consensus 107 ~~~~~~~~~--~~~~~~~~~~~~vlilDe~~~l~~~------~~~~L~~~le~~~------------~~~~~Il~~~~~~ 166 (337)
T PRK12402 107 DNFKHVLKE--YASYRPLSADYKTILLDNAEALRED------AQQALRRIMEQYS------------RTCRFIIATRQPS 166 (337)
T ss_pred HHHHHHHHH--HHhcCCCCCCCcEEEEeCcccCCHH------HHHHHHHHHHhcc------------CCCeEEEEeCChh
Confidence 011100000 0112343344558999999865432 3455666666321 1344666655432
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+++..+.+.+|+.+++..+...++..
T Consensus 167 ----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 167 ----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred ----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 466778889999999999999999888887654
No 81
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.73 E-value=9.3e-08 Score=100.39 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=61.9
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe-eecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEe
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL-YDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSL 552 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i 552 (583)
..++|+||+|....+ ..+.|++.++.|.. +.+.......-.++.++|++||..+ .+++.++.+|. .+.+
T Consensus 129 ~GiL~lDEInrl~~~------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~---~l~~aLldRF~~~v~v 199 (334)
T PRK13407 129 RGYLYIDEVNLLEDH------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG---ELRPQLLDRFGLSVEV 199 (334)
T ss_pred CCeEEecChHhCCHH------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC---CCCHHHHhhcceEEEc
Confidence 358999999987654 57788889987754 3344444455568999999998642 58999999997 5888
Q ss_pred CCCCH-HHHHHHHHHH
Q psy17974 553 PSPTE-DTLKVIFKVR 567 (583)
Q Consensus 553 ~~p~~-~sl~~I~~~~ 567 (583)
++|.. ++-..|....
T Consensus 200 ~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 200 RSPRDVETRVEVIRRR 215 (334)
T ss_pred CCCCcHHHHHHHHHHh
Confidence 88877 6666666654
No 82
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.5e-08 Score=110.41 Aligned_cols=146 Identities=21% Similarity=0.339 Sum_probs=96.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDV 483 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDl 483 (583)
-.+.|||+||||||||.++++.+.+- +.....+ +.+++.++.-+-=..|.+..|- +....+||+|||++
T Consensus 182 iPkGvlLvGpPGTGKTLLAkAvAgEA----~VPFf~i------SGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 182 IPKGVLLVGPPGTGKTLLAKAVAGEA----GVPFFSI------SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred cccceeEecCCCCCcHHHHHHHhccc----CCCceec------cchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehh
Confidence 34799999999999999999998754 3333332 2233333322211222222332 23455799999999
Q ss_pred CCCCcccC----CCCC-hHHHHHHHH-HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc---cceEEEeCC
Q psy17974 484 NMPKLETY----GAQP-PIELLRQFL-DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR---HFGLLSLPS 554 (583)
Q Consensus 484 n~p~~d~y----g~q~-~lElLRq~l-d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr---~f~vi~i~~ 554 (583)
+.-..... |... --..|+|++ |..||... +.+.++||+|.|. .+++.|+| +.+.|.++.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~--------~gviviaaTNRpd----VlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN--------EGVIVIAATNRPD----VLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC--------CceEEEecCCCcc----cchHhhcCCCCcceeeecCC
Confidence 98766541 1211 224677776 55677632 4688999999886 67888876 446899999
Q ss_pred CCHHHHHHHHHHHhcccc
Q psy17974 555 PTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 555 p~~~sl~~I~~~~l~~~l 572 (583)
|+-.-..+|...+++...
T Consensus 320 PDi~gRe~IlkvH~~~~~ 337 (596)
T COG0465 320 PDIKGREQILKVHAKNKP 337 (596)
T ss_pred cchhhHHHHHHHHhhcCC
Confidence 999999999997776443
No 83
>KOG0729|consensus
Probab=98.72 E-value=4.2e-08 Score=97.04 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCe
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKR 475 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~ 475 (583)
.+..+-+...+.|||+||||||||.+++++++.- +..++.+ ..++.+|+.+..... -.+..|. +...|-
T Consensus 202 rfv~lgidppkgvllygppgtgktl~aravanrt----dacfirv-----igselvqkyvgegar-mvrelf~martkka 271 (435)
T KOG0729|consen 202 RFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----DACFIRV-----IGSELVQKYVGEGAR-MVRELFEMARTKKA 271 (435)
T ss_pred HHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----CceEEee-----hhHHHHHHHhhhhHH-HHHHHHHHhcccce
Confidence 4456667778999999999999999999999853 2233333 455677776532211 1122333 334567
Q ss_pred EEEEecCCCCCCcccCC-----CC----ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 476 LAVFVDDVNMPKLETYG-----AQ----PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg-----~q----~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
|++|+||++.-.-..|. .+ ..+|++.|+- || |+. .|+.++.|+|.|. .++|.|+|-
T Consensus 272 ciiffdeidaiggarfddg~ggdnevqrtmleli~qld---gf-dpr-------gnikvlmatnrpd----tldpallrp 336 (435)
T KOG0729|consen 272 CIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLD---GF-DPR-------GNIKVLMATNRPD----TLDPALLRP 336 (435)
T ss_pred EEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhcc---CC-CCC-------CCeEEEeecCCCC----CcCHhhcCC
Confidence 99999999986544332 11 2467777763 43 322 3688888889886 788988875
Q ss_pred ce---EEEeCCCCHHHHHHHHHHHhc
Q psy17974 547 FG---LLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 547 f~---vi~i~~p~~~sl~~I~~~~l~ 569 (583)
-+ -+.+..|+-+.-.+||.-+-+
T Consensus 337 grldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 337 GRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred cccccceeccCCcccccceeEEEecc
Confidence 43 477777888877777765543
No 84
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.71 E-value=2.3e-07 Score=96.72 Aligned_cols=143 Identities=13% Similarity=0.227 Sum_probs=89.2
Q ss_pred HHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhcccCCce--EEEEEeccCCChHHHHHHHHhhhhhhcCccccCCC-C
Q psy17974 399 MEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLASNTWA--ALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPL-G 473 (583)
Q Consensus 399 l~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~--~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~-g 473 (583)
+..+++.+ .+++|+||+|||||++++.+++.+. ...+. .+.++.+.......+++.+..-... .|.. +
T Consensus 29 l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~ 101 (319)
T PRK00440 29 LKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY-GEDWRENFLELNASDERGIDVIRNKIKEFART------APVGGA 101 (319)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc-CCccccceEEeccccccchHHHHHHHHHHHhc------CCCCCC
Confidence 44555554 3699999999999999999998763 22332 3333333333333333333222111 1222 3
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeC
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
.+-+++|||++.-..+ ..+.|+.+++.. ..++.+|.+++.+. .+.+.+.+++.++.++
T Consensus 102 ~~~vviiDe~~~l~~~------~~~~L~~~le~~------------~~~~~lIl~~~~~~----~l~~~l~sr~~~~~~~ 159 (319)
T PRK00440 102 PFKIIFLDEADNLTSD------AQQALRRTMEMY------------SQNTRFILSCNYSS----KIIDPIQSRCAVFRFS 159 (319)
T ss_pred CceEEEEeCcccCCHH------HHHHHHHHHhcC------------CCCCeEEEEeCCcc----ccchhHHHHhheeeeC
Confidence 4568899998765432 245566666532 12345666666442 5677899999999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy17974 554 SPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~ 570 (583)
.++.+++..+...++..
T Consensus 160 ~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 160 PLKKEAVAERLRYIAEN 176 (319)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999888887753
No 85
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.70 E-value=1.7e-07 Score=89.12 Aligned_cols=148 Identities=19% Similarity=0.191 Sum_probs=89.4
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-C
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-A 470 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p 470 (583)
..+....++.+.....||||+|++||||+.+++.+-+.. ...+-..+.+||+.. +.+. ++..+--..++.|. +
T Consensus 8 m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s-~r~~~pfi~vnc~~~-~~~~----~e~~LFG~~~~~~~~~ 81 (168)
T PF00158_consen 8 MKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS-PRKNGPFISVNCAAL-PEEL----LESELFGHEKGAFTGA 81 (168)
T ss_dssp HHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS-TTTTS-EEEEETTTS--HHH----HHHHHHEBCSSSSTTT
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh-hcccCCeEEEehhhh-hcch----hhhhhhcccccccccc
Confidence 455667778888899999999999999999999987754 233457888999875 3333 33343222222221 1
Q ss_pred C--------CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCCCC
Q psy17974 471 P--------LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRMPL 539 (583)
Q Consensus 471 ~--------~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~~l 539 (583)
. .....++|+||++.-.++ .-+-|-++++.+.+......... -.|+++|+|++.+-. ....+
T Consensus 82 ~~~~~G~l~~A~~GtL~Ld~I~~L~~~------~Q~~Ll~~l~~~~~~~~g~~~~~-~~~~RiI~st~~~l~~~v~~g~f 154 (168)
T PF00158_consen 82 RSDKKGLLEQANGGTLFLDEIEDLPPE------LQAKLLRVLEEGKFTRLGSDKPV-PVDVRIIASTSKDLEELVEQGRF 154 (168)
T ss_dssp SSEBEHHHHHTTTSEEEEETGGGS-HH------HHHHHHHHHHHSEEECCTSSSEE-E--EEEEEEESS-HHHHHHTTSS
T ss_pred ccccCCceeeccceEEeecchhhhHHH------HHHHHHHHHhhchhccccccccc-cccceEEeecCcCHHHHHHcCCC
Confidence 0 112458999999876554 34566677887776654433333 359999999886510 11235
Q ss_pred ChhhhccceEEEe
Q psy17974 540 TPRFVRHFGLLSL 552 (583)
Q Consensus 540 ~~Rllr~f~vi~i 552 (583)
.+.|..+.+++.+
T Consensus 155 r~dLy~rL~~~~i 167 (168)
T PF00158_consen 155 REDLYYRLNVFTI 167 (168)
T ss_dssp -HHHHHHHTTEEE
T ss_pred hHHHHHHhceEec
Confidence 5666666665544
No 86
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=1.2e-07 Score=94.64 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=79.1
Q ss_pred HHHHhcCCc-eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 400 EKLLLVNHP-VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 400 ~~~l~~~~~-vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
+.+.....| ++|+||||||||++++++.+.+.. ....+.+++++.. .......++. + .+.-++
T Consensus 32 ~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~~~------~~~~~~~~~~-----~----~~~dlL 95 (229)
T PRK06893 32 KNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLSKS------QYFSPAVLEN-----L----EQQDLV 95 (229)
T ss_pred HHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHHHh------hhhhHHHHhh-----c----ccCCEE
Confidence 333333345 699999999999999999887532 2344555655421 1110111111 1 122388
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce---EEEeCCC
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG---LLSLPSP 555 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~---vi~i~~p 555 (583)
+|||++....+........+++....+.|+ .+.++++..+|..- ....+++.+++. ++.++.|
T Consensus 96 ilDDi~~~~~~~~~~~~l~~l~n~~~~~~~-------------~illits~~~p~~l-~~~~~~L~sRl~~g~~~~l~~p 161 (229)
T PRK06893 96 CLDDLQAVIGNEEWELAIFDLFNRIKEQGK-------------TLLLISADCSPHAL-SIKLPDLASRLTWGEIYQLNDL 161 (229)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCC-------------cEEEEeCCCChHHc-cccchhHHHHHhcCCeeeCCCC
Confidence 999999754332111112333333333211 12344454455421 124478888886 8999999
Q ss_pred CHHHHHHHHHHHhc
Q psy17974 556 TEDTLKVIFKVRTS 569 (583)
Q Consensus 556 ~~~sl~~I~~~~l~ 569 (583)
+.++...|+.....
T Consensus 162 d~e~~~~iL~~~a~ 175 (229)
T PRK06893 162 TDEQKIIVLQRNAY 175 (229)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 87
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.69 E-value=7.4e-08 Score=105.21 Aligned_cols=171 Identities=15% Similarity=0.213 Sum_probs=93.2
Q ss_pred cCCCCCCccceeeCchhhhHHHHHHHHHh-----cC---CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC
Q psy17974 376 YDPTMPFFDMMVPTIDTIRFGSIMEKLLL-----VN---HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447 (583)
Q Consensus 376 ~~~~~~~~~i~VpT~dt~r~~~ll~~~l~-----~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T 447 (583)
+++...|.+ ||...........+..+.. .+ .|++|+||+|+|||++++++.+.+. ..+..+.+++.
T Consensus 104 l~~~~tFdn-Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~-~~~~~v~yi~~---- 177 (445)
T PRK12422 104 LDPLMTFAN-FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALR-ESGGKILYVRS---- 177 (445)
T ss_pred CCccccccc-eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEeeH----
Confidence 344444444 4544444333334444432 12 5899999999999999999998763 22445555543
Q ss_pred ChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 448 SSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 448 t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
+.+...+...+.......+...-.+.-+++|||++.-.......+....++..+.+.| .++|.
T Consensus 178 --~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~---------------k~IIl 240 (445)
T PRK12422 178 --ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG---------------KLIVI 240 (445)
T ss_pred --HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC---------------CcEEE
Confidence 2222111111111000011111123448999999885432211111222333332211 13444
Q ss_pred ecC-CCCCCCCCCChhhhccc---eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 528 ACA-PPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 528 a~~-p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
|++ +|.. -..+.+|+.+|| .++.+++|+.+++..|.....+.
T Consensus 241 ts~~~p~~-l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 241 SSTCAPQD-LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ecCCCHHH-HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 444 4432 124789999999 58999999999999999887765
No 88
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=2.6e-07 Score=92.58 Aligned_cols=132 Identities=15% Similarity=0.167 Sum_probs=79.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||+|||||+++.++...+.. .++.+.++++.. +...+...+++. .+.-+++|||++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~------~~~~~~~~~~~l---------~~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQA------AAGRLRDALEAL---------EGRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHH------hhhhHHHHHHHH---------hcCCEEEEeCcccc
Confidence 57999999999999999998776532 345566665432 111111112211 11237899999876
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc---ceEEEeCCCCHHHHHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH---FGLLSLPSPTEDTLKVI 563 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~---f~vi~i~~p~~~sl~~I 563 (583)
..+... ..+++ .+++.. |+ .+..+|.|++-+-..-..+.+++.+| ..++.++.|+.+++..|
T Consensus 106 ~~~~~~---~~~lf-~l~n~~--~~---------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 106 AGQRED---EVALF-DFHNRA--RA---------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAV 170 (233)
T ss_pred cCChHH---HHHHH-HHHHHH--HH---------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHH
Confidence 543211 12233 233211 11 12346666653322223467899888 46899999999999999
Q ss_pred HHHHhc
Q psy17974 564 FKVRTS 569 (583)
Q Consensus 564 ~~~~l~ 569 (583)
......
T Consensus 171 L~~~a~ 176 (233)
T PRK08727 171 LRERAQ 176 (233)
T ss_pred HHHHHH
Confidence 998543
No 89
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.69 E-value=1.1e-07 Score=104.97 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=92.9
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHH---HHH-hhhh---------hh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE---ILE-GKLD---------KR 463 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~---~ie-~~l~---------~~ 463 (583)
.-++..+..+++++|.||||||||++++.+..-++....- ..+..+...+...... -+. ..+. ..
T Consensus 202 ~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~--~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~ 279 (499)
T TIGR00368 202 RALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNE--EAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPAL 279 (499)
T ss_pred hhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCc--EEEeccccccchhhhccccccccCCccccccccchhhh
Confidence 3466677889999999999999999999876644211111 1111111111000000 000 0000 00
Q ss_pred cCccccCC-----CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCCCCC-
Q psy17974 464 TKTLLGAP-----LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPGGGR- 536 (583)
Q Consensus 464 ~~~~~~p~-----~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~~gr- 536 (583)
-+|.-.+. .....++|+||++.-.. ..++.|||.+|.+.+. .+.........++++||||||...|+
T Consensus 280 ~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~ 353 (499)
T TIGR00368 280 VGGGPIPLPGEISLAHNGVLFLDELPEFKR------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHY 353 (499)
T ss_pred hCCccccchhhhhccCCCeEecCChhhCCH------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcC
Confidence 01100011 22357999999986443 3789999999988764 44444555567999999999842221
Q ss_pred ------------------CCCChhhhccce-EEEeCCCCHHHH
Q psy17974 537 ------------------MPLTPRFVRHFG-LLSLPSPTEDTL 560 (583)
Q Consensus 537 ------------------~~l~~Rllr~f~-vi~i~~p~~~sl 560 (583)
..++..|+.||. .+.++.++.+++
T Consensus 354 ~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 354 GGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred CCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 258999999998 478887766654
No 90
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.68 E-value=5.1e-08 Score=96.74 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=85.7
Q ss_pred ceeeCchhhhHHHHHHHHHhc-C---CceEEEccCCCcHHHHHHHHHHhhcc-cCCceEEEEEeccCCChHHHHHHHHhh
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLV-N---HPVMFTGVTGVGKTVVARSILNKLLA-SNTWAALTINFSAQTSSARTQEILEGK 459 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~-~---~~vLL~Gp~GtGKT~li~~~l~~l~~-~~~~~~~~i~fS~~Tt~~~lq~~ie~~ 459 (583)
-+|+...........+.+.+. + .|++|+||+|+|||.+++++.+.+.. ..+..++.++. ..+...+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~ 82 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADA 82 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHH
Confidence 345454444444444445443 3 37999999999999999999876532 12445555532 2222222111
Q ss_pred hhhhc----CccccCCCCCeEEEEecCCCCCCcccCCCC-ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 460 LDKRT----KTLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 460 l~~~~----~~~~~p~~gk~~vlfiDDln~p~~d~yg~q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
+.... +..|. .--+++|||++.-.... .+| ....++..+.+.|+ -.++++-.+|..
T Consensus 83 ~~~~~~~~~~~~~~----~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~~~k--------------~li~ts~~~P~~ 143 (219)
T PF00308_consen 83 LRDGEIEEFKDRLR----SADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIESGK--------------QLILTSDRPPSE 143 (219)
T ss_dssp HHTTSHHHHHHHHC----TSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHHTTS--------------EEEEEESS-TTT
T ss_pred HHcccchhhhhhhh----cCCEEEEecchhhcCch-HHHHHHHHHHHHHHhhCC--------------eEEEEeCCCCcc
Confidence 11100 00011 12278999998754321 112 23445555555442 124444355542
Q ss_pred CCCCCChhhhccce---EEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 535 GRMPLTPRFVRHFG---LLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 535 gr~~l~~Rllr~f~---vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
-..+.+|+.+||. ++.+..|+.++...|........-
T Consensus 144 -l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 144 -LSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp -TTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred -ccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 2247899988874 899999999999999998876543
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.5e-07 Score=105.25 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=97.2
Q ss_pred HHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHH
Q psy17974 398 IMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 398 ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~ 454 (583)
.+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-+..+..+++.+
T Consensus 26 ~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIRe 105 (702)
T PRK14960 26 ALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRE 105 (702)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHH
Confidence 345555555 4669999999999999999988762110 11344455444555666655
Q ss_pred HHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 455 ILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 455 ~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
+++. . .|.|..|++-|++|||+|+-..+ ....|+..++.. ...+.||.+++.+.
T Consensus 106 li~~-~------~y~P~~gk~KV~IIDEVh~LS~~------A~NALLKtLEEP------------P~~v~FILaTtd~~- 159 (702)
T PRK14960 106 LLDN-V------PYAPTQGRFKVYLIDEVHMLSTH------SFNALLKTLEEP------------PEHVKFLFATTDPQ- 159 (702)
T ss_pred HHHH-H------hhhhhcCCcEEEEEechHhcCHH------HHHHHHHHHhcC------------CCCcEEEEEECChH-
Confidence 5432 1 23455567778999999997654 234455566531 13456777776543
Q ss_pred CCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 535 GRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 535 gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+++.+++|+.++.+..++.+++......+++.
T Consensus 160 ---kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 160 ---KLPITVISRCLQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred ---hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH
Confidence 467888899999999999999999888887754
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.9e-07 Score=97.32 Aligned_cols=143 Identities=19% Similarity=0.244 Sum_probs=91.2
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCC--------------------ceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNT--------------------WAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~--------------------~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..+ +.+||+||+|+|||++++.+++.+.-... ..+..++-+..+..+++.++
T Consensus 28 l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i 107 (363)
T PRK14961 28 ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREI 107 (363)
T ss_pred HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHH
Confidence 34444444 34699999999999999999987631100 12222333333455555554
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ .+. +.|..+++-|++|||+++...+ ..+.|...++.. ...+.+|.+++.+.
T Consensus 108 ~~-~~~------~~p~~~~~kviIIDEa~~l~~~------a~naLLk~lEe~------------~~~~~fIl~t~~~~-- 160 (363)
T PRK14961 108 LD-NIY------YSPSKSRFKVYLIDEVHMLSRH------SFNALLKTLEEP------------PQHIKFILATTDVE-- 160 (363)
T ss_pred HH-HHh------cCcccCCceEEEEEChhhcCHH------HHHHHHHHHhcC------------CCCeEEEEEcCChH--
Confidence 43 222 3455566778999999986543 233334444421 12456676665443
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+++.+|+.++.+++++.+++..+...+++.
T Consensus 161 --~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 161 --KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred --hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH
Confidence 588999999999999999999999888776654
No 93
>KOG0728|consensus
Probab=98.66 E-value=1.3e-07 Score=92.98 Aligned_cols=141 Identities=22% Similarity=0.307 Sum_probs=92.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiD 481 (583)
+...+.|||.||||+|||.++++.+..- ...+ |.. +.++.+|+.|...-. -.+..|. +....+.++|.|
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht----~c~f--irv---sgselvqk~igegsr-mvrelfvmarehapsiifmd 247 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHT----DCTF--IRV---SGSELVQKYIGEGSR-MVRELFVMAREHAPSIIFMD 247 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhc----ceEE--EEe---chHHHHHHHhhhhHH-HHHHHHHHHHhcCCceEeee
Confidence 5567899999999999999999988732 2233 333 345678877642211 0112221 234456799999
Q ss_pred CCCCCCccc-----CCC---C-ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce---E
Q psy17974 482 DVNMPKLET-----YGA---Q-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG---L 549 (583)
Q Consensus 482 Dln~p~~d~-----yg~---q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~---v 549 (583)
||+.-.... .|. | ..+|+|.|+- ||-. -.++.+|.|+|.-. -++|.++|--+ -
T Consensus 248 eidsigs~r~e~~~ggdsevqrtmlellnqld---gfea--------tknikvimatnrid----ild~allrpgridrk 312 (404)
T KOG0728|consen 248 EIDSIGSSRVESGSGGDSEVQRTMLELLNQLD---GFEA--------TKNIKVIMATNRID----ILDPALLRPGRIDRK 312 (404)
T ss_pred cccccccccccCCCCccHHHHHHHHHHHHhcc---cccc--------ccceEEEEeccccc----cccHhhcCCCccccc
Confidence 999765432 122 1 2578888873 4422 34788888887654 57888888554 4
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy17974 550 LSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l 568 (583)
|.+|+|+++.-..|..-+-
T Consensus 313 iefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 313 IEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccCCCCCHHHHHHHHHHhh
Confidence 8999999998877776553
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=3.1e-07 Score=103.86 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=97.5
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-+.....+++.++
T Consensus 28 L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReL 107 (830)
T PRK07003 28 LTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAAL 107 (830)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHH
Confidence 44455554 3569999999999999999988762110 012344444444455555555
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++.- .|.|..+++-|++|||+|+-..+. ...+|+. +|.- -.++.||.+|+.+.
T Consensus 108 Ie~a-------~~~P~~gr~KVIIIDEah~LT~~A-----~NALLKt-LEEP------------P~~v~FILaTtd~~-- 160 (830)
T PRK07003 108 LERA-------VYAPVDARFKVYMIDEVHMLTNHA-----FNAMLKT-LEEP------------PPHVKFILATTDPQ-- 160 (830)
T ss_pred HHHH-------HhccccCCceEEEEeChhhCCHHH-----HHHHHHH-HHhc------------CCCeEEEEEECChh--
Confidence 5322 244556667789999999976542 3456664 4421 13577888888765
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|.+.+++||..+.+..++.+++...+..+++.
T Consensus 161 --KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 161 --KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred --hccchhhhheEEEecCCcCHHHHHHHHHHHHHH
Confidence 688899999999999999999999888887753
No 95
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.65 E-value=2e-07 Score=104.28 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=93.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcc------cCCceEEEEEeccC-CChHHHH-HHHHhhhh--hhcCcccc-----
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLA------SNTWAALTINFSAQ-TSSARTQ-EILEGKLD--KRTKTLLG----- 469 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~------~~~~~~~~i~fS~~-Tt~~~lq-~~ie~~l~--~~~~~~~~----- 469 (583)
...||||+||||||||++++.+.+.... ..+...+.++++.. .+...+. ..+.+-.+ ....+.+|
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 4589999999999999999988653210 11234566666431 1221111 11111000 00011111
Q ss_pred -CC-----CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhC------CeeecCCCe----------eEeecCeEEEE
Q psy17974 470 -AP-----LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG------GLYDRDKMF----------WKTLQDVVLCT 527 (583)
Q Consensus 470 -p~-----~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~------g~yd~~~~~----------~~~i~~i~~ia 527 (583)
|. .....++||||++....+ ..+.|.+.++.+ ++|+..+.. -..-.|+.+|+
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ 238 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIG 238 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEE
Confidence 11 123469999999987655 344555566654 334432210 01124778888
Q ss_pred ecCC-CCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 528 ACAP-PGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 528 a~~p-~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
|++. |. .+++.+.+|+..+.+++++.+++..|....++.
T Consensus 239 ATt~~p~----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 239 ATTRNPE----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred EecCCcc----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH
Confidence 7664 43 699999999999999999999999999988764
No 96
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4e-07 Score=104.73 Aligned_cols=143 Identities=22% Similarity=0.262 Sum_probs=93.8
Q ss_pred HHHHHhcCC--c-eEEEccCCCcHHHHHHHHHHhhcccCCc------------------eEEEEEecc--CCChHHHHHH
Q psy17974 399 MEKLLLVNH--P-VMFTGVTGVGKTVVARSILNKLLASNTW------------------AALTINFSA--QTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~--~-vLL~Gp~GtGKT~li~~~l~~l~~~~~~------------------~~~~i~fS~--~Tt~~~lq~~ 455 (583)
+..++..++ + .||+||+|||||++++.+++.+.-.... ....+.+.+ .+..+.+..+
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReL 107 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTREL 107 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHH
Confidence 444455542 3 5899999999999999999887321110 011122233 2444555544
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ .+. +.|..|++-|++|||+++-..+ ..+.|+..+|.- ...+.||.+|+.+.
T Consensus 108 ie-~v~------~~P~~gk~KViIIDEAh~LT~e------AqNALLKtLEEP------------P~~vrFILaTTe~~-- 160 (944)
T PRK14949 108 LD-NVQ------YRPSRGRFKVYLIDEVHMLSRS------SFNALLKTLEEP------------PEHVKFLLATTDPQ-- 160 (944)
T ss_pred HH-HHH------hhhhcCCcEEEEEechHhcCHH------HHHHHHHHHhcc------------CCCeEEEEECCCch--
Confidence 42 222 3344567779999999997655 345555566521 23567787777654
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|.+-+++|+.++.+..++.+++......++..
T Consensus 161 --kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 161 --KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred --hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 588889999999999999999999888777653
No 97
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.64 E-value=2.3e-07 Score=107.85 Aligned_cols=141 Identities=24% Similarity=0.330 Sum_probs=86.6
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC------hHHHHHHHHhhhhhhcCccccCCCCCeEE
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS------SARTQEILEGKLDKRTKTLLGAPLGKRLA 477 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt------~~~lq~~ie~~l~~~~~~~~~p~~gk~~v 477 (583)
..++++||+||||||||++++.+++.+ ....+.++.+...+ ...+..++ +. +..+.+.|
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~~~~i~~~~~g~~~~~l~~lf----~~-------a~~~~p~i 274 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISINGPEIMSKYYGESEERLREIF----KE-------AEENAPSI 274 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEecHHHhcccccHHHHHHHHHH----HH-------HHhcCCcE
Confidence 346789999999999999999999876 23345555432111 11122221 11 11234679
Q ss_pred EEecCCCCCCcccCCC--CChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEE
Q psy17974 478 VFVDDVNMPKLETYGA--QPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLS 551 (583)
Q Consensus 478 lfiDDln~p~~d~yg~--q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~ 551 (583)
+||||++......... ......+.+++.. .+... -.++.+|||+|++. .+++.+.| +| ..+.
T Consensus 275 l~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--------~~~vivI~atn~~~----~ld~al~r~gRfd~~i~ 342 (733)
T TIGR01243 275 IFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--------RGRVIVIGATNRPD----ALDPALRRPGRFDREIV 342 (733)
T ss_pred EEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--------CCCEEEEeecCChh----hcCHHHhCchhccEEEE
Confidence 9999998754432111 1112233333321 12111 13578899999886 68888877 66 4799
Q ss_pred eCCCCHHHHHHHHHHHhccc
Q psy17974 552 LPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~~ 571 (583)
++.|+.+....|+.......
T Consensus 343 i~~P~~~~R~~Il~~~~~~~ 362 (733)
T TIGR01243 343 IRVPDKRARKEILKVHTRNM 362 (733)
T ss_pred eCCcCHHHHHHHHHHHhcCC
Confidence 99999999999998766543
No 98
>KOG0743|consensus
Probab=98.63 E-value=2.6e-07 Score=98.11 Aligned_cols=136 Identities=15% Similarity=0.275 Sum_probs=93.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
++.-||+||||||||+++.++++.| +|.+.-++.++...-+++.+++... ..+.||.|+||+-
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~dLr~LL~~t-------------~~kSIivIEDIDc 297 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSDLRHLLLAT-------------PNKSILLIEDIDC 297 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHHHHHHHHhC-------------CCCcEEEEeeccc
Confidence 3577999999999999999999988 6889999998876666666654221 1255889999997
Q ss_pred CCc--cc--------CC--CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cceE-E
Q psy17974 486 PKL--ET--------YG--AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFGL-L 550 (583)
Q Consensus 486 p~~--d~--------yg--~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~v-i 550 (583)
.-. ++ .| +.-.+.-|=-++| |.|..... ++|. |-|+|... .|+|+|+| |.-+ |
T Consensus 298 s~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--GlwSscg~-----ERIi-vFTTNh~E----kLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 298 SFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--GLWSSCGD-----ERII-VFTTNHKE----KLDPALLRPGRMDMHI 365 (457)
T ss_pred ccccccccccccccccCCcceeehHHhhhhhc--cccccCCC-----ceEE-EEecCChh----hcCHhhcCCCcceeEE
Confidence 521 11 11 1122333333343 33332211 4554 45667665 79999999 4443 9
Q ss_pred EeCCCCHHHHHHHHHHHhcc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~ 570 (583)
++.+-+.+.++..++.+|..
T Consensus 366 ~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCC
Confidence 99999999999999999874
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.62 E-value=2.2e-07 Score=92.07 Aligned_cols=135 Identities=15% Similarity=0.113 Sum_probs=78.7
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
..+.+++|+||+|||||++++.+++... ......+.++++.... ...+.+ +. + .+.-+++|||+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~-~~~~~~~~i~~~~~~~--~~~~~~----~~-----~----~~~~lLvIDdi 99 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAE-ERGKSAIYLPLAELAQ--ADPEVL----EG-----L----EQADLVCLDDV 99 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEeHHHHHH--hHHHHH----hh-----c----ccCCEEEEeCh
Confidence 4567899999999999999999988653 2344566666654332 111111 11 0 11237899999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeCCCCHHHH
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLPSPTEDTL 560 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl 560 (583)
+....+.. -.+.|..+++.. ++. +..+|.+++.+........+++.+++ .++.+++|+.+++
T Consensus 100 ~~l~~~~~----~~~~L~~~l~~~--~~~---------~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~ 164 (226)
T TIGR03420 100 EAIAGQPE----WQEALFHLYNRV--REA---------GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEK 164 (226)
T ss_pred hhhcCChH----HHHHHHHHHHHH--HHc---------CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHH
Confidence 97543311 134444444421 110 12355555543211111226777666 4799999999999
Q ss_pred HHHHHHHhc
Q psy17974 561 KVIFKVRTS 569 (583)
Q Consensus 561 ~~I~~~~l~ 569 (583)
..+......
T Consensus 165 ~~~l~~~~~ 173 (226)
T TIGR03420 165 IAALQSRAA 173 (226)
T ss_pred HHHHHHHHH
Confidence 988877654
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=6.2e-07 Score=99.12 Aligned_cols=135 Identities=19% Similarity=0.238 Sum_probs=93.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccC------------------------CceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASN------------------------TWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~------------------------~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
+.+||+||+|||||++++.+++.+.-.. ...+..++-++.+..+++.++++.. +
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a-~- 121 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESA-E- 121 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHH-H-
Confidence 4799999999999999999988762110 1133344444556677777766442 1
Q ss_pred hcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChh
Q psy17974 463 RTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPR 542 (583)
Q Consensus 463 ~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~R 542 (583)
+.|-.+++-|++|||+++-..+ ..+.|...++.. ...+.||.+++.+. .+++.
T Consensus 122 -----~~P~~~~~KVvIIDEa~~Ls~~------a~naLLk~LEep------------p~~~vfI~aTte~~----kI~~t 174 (507)
T PRK06645 122 -----YKPLQGKHKIFIIDEVHMLSKG------AFNALLKTLEEP------------PPHIIFIFATTEVQ----KIPAT 174 (507)
T ss_pred -----hccccCCcEEEEEEChhhcCHH------HHHHHHHHHhhc------------CCCEEEEEEeCChH----HhhHH
Confidence 2355567778999999986543 233444445421 23566776665443 58889
Q ss_pred hhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 543 FVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 543 llr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+.+++.++.+..++.+++..++..+++.
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888763
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.59 E-value=3.9e-07 Score=103.68 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHhcCC--ce-EEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 392 TIRFGSIMEKLLLVNH--PV-MFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~--~v-LL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
..+...++...+.... ++ +++|+||||||++++.+++.+... ..+.++.||+....++..+-..|-..+..
T Consensus 764 IeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g 843 (1164)
T PTZ00112 764 IKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFN 843 (1164)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcC
Confidence 3455667777776433 34 599999999999999998776321 13667889997767766544444444411
Q ss_pred hc--Cc---------ccc--C-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEe
Q psy17974 463 RT--KT---------LLG--A-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTA 528 (583)
Q Consensus 463 ~~--~~---------~~~--p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa 528 (583)
.. .+ .|. + ..+...||+|||++.-... .| +.|.++++ |..... ..+.+||+
T Consensus 844 ~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---~Q---DVLYnLFR---~~~~s~------SKLiLIGI 908 (1164)
T PTZ00112 844 KKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---TQ---KVLFTLFD---WPTKIN------SKLVLIAI 908 (1164)
T ss_pred CCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---HH---HHHHHHHH---HhhccC------CeEEEEEe
Confidence 10 00 111 1 1223468999999976542 12 44555555 221111 24778888
Q ss_pred cCCCCCCCCCCChhhhccce--EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 529 CAPPGGGRMPLTPRFVRHFG--LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 529 ~~p~~~gr~~l~~Rllr~f~--vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+|+-. -...+.+|+.+++. .+.+++++.++|..|....++.
T Consensus 909 SNdlD-LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 909 SNTMD-LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCchh-cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 88532 11256788888775 4888999999999999988875
No 102
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=3.4e-07 Score=102.32 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=97.8
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhccc-----CC--------------------ceEEEEEeccCCChH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLAS-----NT--------------------WAALTINFSAQTSSA 450 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~-----~~--------------------~~~~~i~fS~~Tt~~ 450 (583)
+..++..++ .+||+||+|+|||++++.+++.+.-. .+ ..++.++-+..+..+
T Consensus 28 L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVD 107 (700)
T PRK12323 28 LTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVD 107 (700)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHH
Confidence 444555553 56999999999999999998876310 00 133445544455566
Q ss_pred HHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC
Q psy17974 451 RTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA 530 (583)
Q Consensus 451 ~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~ 530 (583)
++.++++.- .|.|..|++-|++|||+|+-..+. ...||+ .+|. .-.++.||.+++
T Consensus 108 dIReLie~~-------~~~P~~gr~KViIIDEah~Ls~~A-----aNALLK-TLEE------------PP~~v~FILaTt 162 (700)
T PRK12323 108 EMAQLLDKA-------VYAPTAGRFKVYMIDEVHMLTNHA-----FNAMLK-TLEE------------PPEHVKFILATT 162 (700)
T ss_pred HHHHHHHHH-------HhchhcCCceEEEEEChHhcCHHH-----HHHHHH-hhcc------------CCCCceEEEEeC
Confidence 666655322 233556677799999999976542 344555 3442 124577888887
Q ss_pred CCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 531 PPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 531 p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+. .|.+.+++||..+.+..++.+++...+..++.
T Consensus 163 ep~----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 163 DPQ----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred ChH----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHH
Confidence 665 78899999999999999999999988887765
No 103
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-07 Score=103.93 Aligned_cols=145 Identities=19% Similarity=0.223 Sum_probs=95.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCC-----------CCeE
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPL-----------GKRL 476 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~-----------gk~~ 476 (583)
=++|+||||+|||++.+.+++.+. + .++++......+- +.+...++...|+-+ .+.-
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~-R---kfvR~sLGGvrDE--------AEIRGHRRTYIGamPGrIiQ~mkka~~~NP 419 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALG-R---KFVRISLGGVRDE--------AEIRGHRRTYIGAMPGKIIQGMKKAGVKNP 419 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhC-C---CEEEEecCccccH--------HHhccccccccccCChHHHHHHHHhCCcCC
Confidence 457999999999999999999983 2 3556655554442 222222333334322 2345
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHHH--HhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCC
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQFL--DFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPS 554 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~l--d~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~ 554 (583)
|+.+|||+--..+-.|. |.-.+|.-+- .+..|-|.-=..-..+.++.||||.|... .||..|+-|.-+|.+..
T Consensus 420 v~LLDEIDKm~ss~rGD-PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~----tIP~PLlDRMEiI~lsg 494 (782)
T COG0466 420 VFLLDEIDKMGSSFRGD-PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD----TIPAPLLDRMEVIRLSG 494 (782)
T ss_pred eEEeechhhccCCCCCC-hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc----cCChHHhcceeeeeecC
Confidence 78899999877775554 4433442210 11122111000112367899999998764 79999999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy17974 555 PTEDTLKVIFKVRTS 569 (583)
Q Consensus 555 p~~~sl~~I~~~~l~ 569 (583)
.++++-..|-..+|-
T Consensus 495 Yt~~EKl~IAk~~Li 509 (782)
T COG0466 495 YTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHHHHHHHHhcc
Confidence 999999999888773
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.59 E-value=1.4e-07 Score=103.55 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=94.6
Q ss_pred CCCCCCccceeeCchhhhHHHHHHHHHhc----CCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHH
Q psy17974 377 DPTMPFFDMMVPTIDTIRFGSIMEKLLLV----NHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSAR 451 (583)
Q Consensus 377 ~~~~~~~~i~VpT~dt~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~ 451 (583)
++...|.+ ||...........+..+... ..|++|+||+|+|||++++++.+.+... .+..+.+++....+ ..
T Consensus 116 ~~~~tfd~-fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~ 192 (450)
T PRK00149 116 NPKYTFDN-FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--ND 192 (450)
T ss_pred CCCCcccc-cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HH
Confidence 33334433 44444443333444444432 2579999999999999999998876322 13455555443221 11
Q ss_pred HHHHHHhh-hhhhcCccccCCCCCeEEEEecCCCCCCcccCCCC-ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 452 TQEILEGK-LDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 452 lq~~ie~~-l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
+...+... .+... ..|. +.-+++|||++...... ++| ..+.++..+.+.| ...++++.
T Consensus 193 ~~~~~~~~~~~~~~-~~~~----~~dlLiiDDi~~l~~~~-~~~~~l~~~~n~l~~~~--------------~~iiits~ 252 (450)
T PRK00149 193 FVNALRNNTMEEFK-EKYR----SVDVLLIDDIQFLAGKE-RTQEEFFHTFNALHEAG--------------KQIVLTSD 252 (450)
T ss_pred HHHHHHcCcHHHHH-HHHh----cCCEEEEehhhhhcCCH-HHHHHHHHHHHHHHHCC--------------CcEEEECC
Confidence 22222110 10000 0111 23389999998754321 112 2334444444422 11355555
Q ss_pred CCCCCCCCCCChhhhccc---eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 530 APPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+|.. -..+.+|+.+|| .++.+..|+.+.+..|.......
T Consensus 253 ~~p~~-l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 253 RPPKE-LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred CCHHH-HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 55541 112779999999 48999999999999999998774
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.58 E-value=1.3e-07 Score=109.75 Aligned_cols=152 Identities=19% Similarity=0.306 Sum_probs=102.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCcccc-C-CCCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLG-A-PLGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~-p-~~gk~~vlfiDD 482 (583)
.+||+||||||||.+++.+++.+. ..++.+++|.......+-.++.+. .....++.+. . ......|+++||
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~----~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDE 561 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALG----VHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDE 561 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhc----CCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEec
Confidence 369999999999999999998772 346777777654432222332111 0000011000 0 011246999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-------C--------------CCCCCh
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-------G--------------RMPLTP 541 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-------g--------------r~~l~~ 541 (583)
++...++ +...|-|++|.|.+-|. ...-+...++.+|+|+|.... | +..+.|
T Consensus 562 ieka~~~------~~~~Ll~~ld~g~~~d~-~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~p 634 (731)
T TIGR02639 562 IEKAHPD------IYNILLQVMDYATLTDN-NGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSP 634 (731)
T ss_pred hhhcCHH------HHHHHHHhhccCeeecC-CCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcCh
Confidence 9977654 67889999997766553 334456678889999886421 1 123678
Q ss_pred hhhccce-EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 542 RFVRHFG-LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 542 Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|+.|+. ++.+.+.+.+++..|....++.
T Consensus 635 ef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 635 EFRNRLDAIIHFNPLSEEVLEKIVQKFVDE 664 (731)
T ss_pred HHHhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 8888995 8999999999999999998864
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=2.7e-07 Score=102.46 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=96.3
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..+ +..|++||+|+|||++++.+++.+.-.. .-.++.++-++.+..+++.++
T Consensus 28 L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l 107 (509)
T PRK14958 28 LSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTREL 107 (509)
T ss_pred HHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHH
Confidence 34444443 3479999999999999999988762110 012455665556666776665
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. +. |.|..|++-|++|||+||-..+. .+.|+..+|.- ...+.||.+++.+.
T Consensus 108 ~~~-~~------~~p~~~~~kV~iIDE~~~ls~~a------~naLLk~LEep------------p~~~~fIlattd~~-- 160 (509)
T PRK14958 108 LDN-IP------YAPTKGRFKVYLIDEVHMLSGHS------FNALLKTLEEP------------PSHVKFILATTDHH-- 160 (509)
T ss_pred HHH-Hh------hccccCCcEEEEEEChHhcCHHH------HHHHHHHHhcc------------CCCeEEEEEECChH--
Confidence 432 22 34666777799999999976652 33344455521 23567777776553
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+++.+.+++.++.+..++.+++......+++.
T Consensus 161 --kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~ 193 (509)
T PRK14958 161 --KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE 193 (509)
T ss_pred --hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 577779999999999999999988777766653
No 107
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.1e-07 Score=101.66 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcc---cCCceEEEE-----------------Ee-ccCCChHHHH
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLA---SNTWAALTI-----------------NF-SAQTSSARTQ 453 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~---~~~~~~~~i-----------------~f-S~~Tt~~~lq 453 (583)
...-+......|+|+|++||||||||++++.+-.-++. ++-..+..| .| ++.-++ ..-
T Consensus 187 AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsa-S~~ 265 (490)
T COG0606 187 AKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSA-SLA 265 (490)
T ss_pred HHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccc-hHH
Confidence 34456777889999999999999999999865443311 110000000 00 000000 000
Q ss_pred HHHHhhhhhhcCccccCC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEec
Q psy17974 454 EILEGKLDKRTKTLLGAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~ 529 (583)
.+ . -.++.+.|. -....|+|+||+---.. .++|.|||-+|.|-.- .+.........++++|+||
T Consensus 266 aL-----v-GGG~~p~PGeIsLAH~GVLFLDElpef~~------~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~Am 333 (490)
T COG0606 266 AL-----V-GGGGVPRPGEISLAHNGVLFLDELPEFKR------SILEALREPLENGKIIISRAGSKVTYPARFQLVAAM 333 (490)
T ss_pred HH-----h-CCCCCCCCCceeeecCCEEEeeccchhhH------HHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhc
Confidence 00 0 011233332 23467999999743222 5899999999998654 3334455566899999999
Q ss_pred CCCC-C--C----C------------CCCChhhhccce-EEEeCCCCHHH
Q psy17974 530 APPG-G--G----R------------MPLTPRFVRHFG-LLSLPSPTEDT 559 (583)
Q Consensus 530 ~p~~-~--g----r------------~~l~~Rllr~f~-vi~i~~p~~~s 559 (583)
||.- | | | +.++.-|++++- .+.++.++..+
T Consensus 334 NpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 334 NPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred CCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 9952 2 1 1 234555666765 56666666433
No 108
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.57 E-value=1.5e-07 Score=104.85 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=89.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEE-EEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALT-INFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~-i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
.||||+|+||||||++++.+.+..+ ...|.... .+.... ++..+.+...+...- ..|.+. .....+++|||+|.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~-r~~~~~~~~~~~~~l-~~~~~~~~~~g~~~~-~~G~l~--~A~~Gil~iDEi~~ 311 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAP-RAVYTTGKGSSAVGL-TAAVTRDPETREFTL-EGGALV--LADNGVCCIDEFDK 311 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcC-cceEcCCCCCCcCCc-cccceEccCcceEEe-cCccEE--ecCCCEEEEechhh
Confidence 3899999999999999998887542 11111000 000001 111110000000000 011111 12345899999997
Q ss_pred CCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCCCCC----------CCCChhhhccceE--EEe
Q psy17974 486 PKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPGGGR----------MPLTPRFVRHFGL--LSL 552 (583)
Q Consensus 486 p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~~gr----------~~l~~Rllr~f~v--i~i 552 (583)
...+ ....|.+.++.+..- .+.......-.++.+|||+||-.| + ..+++.+++||-+ +..
T Consensus 312 l~~~------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g-~y~~~~~~~~n~~l~~~lLsRFdLi~~~~ 384 (509)
T smart00350 312 MDDS------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGG-RYDPKLTPEENIDLPAPILSRFDLLFVVL 384 (509)
T ss_pred CCHH------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCc-ccCCCcChhhccCCChHHhCceeeEEEec
Confidence 5443 345566677765432 222222333368999999999753 2 2799999999953 566
Q ss_pred CCCCHHHHHHHHHHHhcccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~l 572 (583)
++|+.+.-..|...++..|-
T Consensus 385 d~~~~~~d~~i~~~i~~~~~ 404 (509)
T smart00350 385 DEVDEERDRELAKHVVDLHR 404 (509)
T ss_pred CCCChHHHHHHHHHHHHhhc
Confidence 88999988888888876553
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.56 E-value=2.4e-07 Score=100.43 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=91.6
Q ss_pred CCCCCCccceeeCchhhhHHHHHHHHHhc----CCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHH
Q psy17974 377 DPTMPFFDMMVPTIDTIRFGSIMEKLLLV----NHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSAR 451 (583)
Q Consensus 377 ~~~~~~~~i~VpT~dt~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~ 451 (583)
++.-.|. -||...+.......+..+.+. ..|++|+||+|+|||++++++.+.+... .+..+++++.+.-. ..
T Consensus 104 ~~~~tfd-~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~ 180 (405)
T TIGR00362 104 NPKYTFD-NFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--ND 180 (405)
T ss_pred CCCCccc-ccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HH
Confidence 3333343 344455444333444444443 2478999999999999999998876321 13456666532211 11
Q ss_pred HHHHHHh-hhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCC-ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 452 TQEILEG-KLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 452 lq~~ie~-~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
+...+.. ..+... ..+. +.-+++|||++...... ++| ..+.++..+.+.+ ...++++.
T Consensus 181 ~~~~~~~~~~~~~~-~~~~----~~dlLiiDDi~~l~~~~-~~~~~l~~~~n~~~~~~--------------~~iiits~ 240 (405)
T TIGR00362 181 FVNALRNNKMEEFK-EKYR----SVDLLLIDDIQFLAGKE-RTQEEFFHTFNALHENG--------------KQIVLTSD 240 (405)
T ss_pred HHHHHHcCCHHHHH-HHHH----hCCEEEEehhhhhcCCH-HHHHHHHHHHHHHHHCC--------------CCEEEecC
Confidence 1111110 010000 0111 12378999999754321 112 1233343333321 11244443
Q ss_pred CCCCCCCCCCChhhhccce---EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 530 APPGGGRMPLTPRFVRHFG---LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f~---vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+|.. -..+.+|+.++|. ++.++.|+.++...|.......
T Consensus 241 ~~p~~-l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 241 RPPKE-LPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred CCHHH-HhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 44431 1236789988884 7999999999999999988765
No 110
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=9.5e-07 Score=98.33 Aligned_cols=143 Identities=20% Similarity=0.251 Sum_probs=94.1
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..++ .+||+||+|+|||++++.+++.+.-.. ...++.++-+..+..+++.++
T Consensus 28 L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~i 107 (546)
T PRK14957 28 LVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEI 107 (546)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHH
Confidence 344555543 478999999999999999988763110 012333444444555555554
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ .+. +.|..|++-|++|||+++-..+ ..+.|+..+|.. ...+.||.+|+.+.
T Consensus 108 i~-~~~------~~p~~g~~kViIIDEa~~ls~~------a~naLLK~LEep------------p~~v~fIL~Ttd~~-- 160 (546)
T PRK14957 108 LD-NIQ------YMPSQGRYKVYLIDEVHMLSKQ------SFNALLKTLEEP------------PEYVKFILATTDYH-- 160 (546)
T ss_pred HH-HHH------hhhhcCCcEEEEEechhhccHH------HHHHHHHHHhcC------------CCCceEEEEECChh--
Confidence 43 222 2344566679999999876543 455666666642 13466777665432
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+|+.++.+..++.+++......+++.
T Consensus 161 --kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~ 193 (546)
T PRK14957 161 --KIPVTILSRCIQLHLKHISQADIKDQLKIILAK 193 (546)
T ss_pred --hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH
Confidence 567779999999999999999998888777654
No 111
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=8.7e-07 Score=97.35 Aligned_cols=143 Identities=21% Similarity=0.192 Sum_probs=99.9
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhc--------------------ccCCceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLL--------------------ASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~--------------------~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..| ++.||+||+|+|||++++.+++.+. +.....++.++-++.+..+++..+
T Consensus 25 L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~I 104 (491)
T PRK14964 25 LRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVI 104 (491)
T ss_pred HHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHH
Confidence 44444444 4699999999999999998887541 012345566777777777887776
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++.- . |.|-.+++-|++|||+|+-..+ ..+.|.-.+|.- ...+.||.+++.+.
T Consensus 105 ie~~-~------~~P~~~~~KVvIIDEah~Ls~~------A~NaLLK~LEeP------------p~~v~fIlatte~~-- 157 (491)
T PRK14964 105 LENS-C------YLPISSKFKVYIIDEVHMLSNS------AFNALLKTLEEP------------APHVKFILATTEVK-- 157 (491)
T ss_pred HHHH-H------hccccCCceEEEEeChHhCCHH------HHHHHHHHHhCC------------CCCeEEEEEeCChH--
Confidence 6432 2 3455566778999999987653 344455555521 13466776665443
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+|+.++.+..++.+++......+.+.
T Consensus 158 --Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 158 --KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred --HHHHHHHHhheeeecccccHHHHHHHHHHHHHH
Confidence 588999999999999999999999888877653
No 112
>KOG0742|consensus
Probab=98.55 E-value=6.8e-07 Score=93.26 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=105.7
Q ss_pred CCCCccceeeCchhhhHHHHHHHHHhcC------CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHH
Q psy17974 379 TMPFFDMMVPTIDTIRFGSIMEKLLLVN------HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSART 452 (583)
Q Consensus 379 ~~~~~~i~VpT~dt~r~~~ll~~~l~~~------~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~l 452 (583)
..++.+++.++.=-.|...+...-...+ +|+|++||||||||+.++.++..- +.....++- ...-|---
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----GlDYA~mTG-GDVAPlG~ 425 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS----GLDYAIMTG-GDVAPLGA 425 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc----CCceehhcC-CCccccch
Confidence 4567788887766666666554333222 589999999999999999998753 333322211 11111111
Q ss_pred H--HHHHhhhhhhcCccccCCCCCeEEEEecCCCCC--Cccc-CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 453 Q--EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP--KLET-YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 453 q--~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p--~~d~-yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
| ..|..-++. +....+-+++||||.+.- ...+ |=+..--..|..++-.-| + .-.|+.++.
T Consensus 426 qaVTkiH~lFDW------akkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG-----d----qSrdivLvl 490 (630)
T KOG0742|consen 426 QAVTKIHKLFDW------AKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D----QSRDIVLVL 490 (630)
T ss_pred HHHHHHHHHHHH------HhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc-----c----cccceEEEe
Confidence 1 112222232 123455689999998742 2222 222112223444432222 1 124788999
Q ss_pred ecCCCCCCCCCCChhhhccce-EEEeCCCCHHHHHHHHHHHhcccccC
Q psy17974 528 ACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 528 a~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~~l~~ 574 (583)
|+|.|+ +++.....++. +|.+|.|.+++-..+..-+++.|+..
T Consensus 491 AtNrpg----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~ 534 (630)
T KOG0742|consen 491 ATNRPG----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILK 534 (630)
T ss_pred ccCCcc----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcC
Confidence 999998 67777777775 89999999999999999999988754
No 113
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.53 E-value=2.1e-07 Score=109.24 Aligned_cols=155 Identities=19% Similarity=0.240 Sum_probs=107.1
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCcccc-C-CCCCeEEEEecCC
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLG-A-PLGKRLAVFVDDV 483 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~-p-~~gk~~vlfiDDl 483 (583)
+||+||||||||.++++++..+.. ..-.++.+++|..+.+..+.+++.+. .....+|.+. . ......|+++||+
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEech
Confidence 699999999999999999888732 23356788888766554444333221 1111111110 0 1123569999999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-------CC------------------CC
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-------GR------------------MP 538 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-------gr------------------~~ 538 (583)
.-..+ .+.++|-|++|+|...|.. ..-+..++..+|.|+|-+.. +. ..
T Consensus 678 eka~~------~v~~~Llq~ld~g~l~d~~-Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (852)
T TIGR03345 678 EKAHP------DVLELFYQVFDKGVMEDGE-GREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKV 750 (852)
T ss_pred hhcCH------HHHHHHHHHhhcceeecCC-CcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHh
Confidence 64433 4788999999998777654 45677889999999885421 10 22
Q ss_pred CChhhhccceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 539 LTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 539 l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+.|.|++|+.+|.+.+.+.+++..|....+...
T Consensus 751 f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 751 FKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred ccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999888654
No 114
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.52 E-value=1.4e-06 Score=86.62 Aligned_cols=142 Identities=21% Similarity=0.392 Sum_probs=91.3
Q ss_pred HHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH--HHhhhhhhcCccccCCCCCe
Q psy17974 400 EKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI--LEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 400 ~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~--ie~~l~~~~~~~~~p~~gk~ 475 (583)
..+++. ..||||.|+.|||||+++++++..+. ..+..++.+. .+++..+ |...+.. ...+
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~-~~GLRlIev~------k~~L~~l~~l~~~l~~---------~~~k 107 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA-DQGLRLIEVS------KEDLGDLPELLDLLRD---------RPYK 107 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh-hcCceEEEEC------HHHhccHHHHHHHHhc---------CCCC
Confidence 444443 36999999999999999999999874 4456666553 2333221 1111111 1247
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC----C--CCCC-----CCCh---
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP----G--GGRM-----PLTP--- 541 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~----~--~gr~-----~l~~--- 541 (583)
.||||||+.....|. ---.|+.++| ||.-.+ .+|+.+.||.|.= . .-+. ++-+
T Consensus 108 FIlf~DDLsFe~~d~-----~yk~LKs~Le-Ggle~~-------P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~ 174 (249)
T PF05673_consen 108 FILFCDDLSFEEGDT-----EYKALKSVLE-GGLEAR-------PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDT 174 (249)
T ss_pred EEEEecCCCCCCCcH-----HHHHHHHHhc-CccccC-------CCcEEEEEecchhhccchhhhhccCCCccccCcchH
Confidence 899999998876663 3467888998 444332 4578888888731 1 0111 1211
Q ss_pred -----hhhccce-EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 542 -----RFVRHFG-LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 542 -----Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|.-||- .|.+.+|+++.-..|...+++.
T Consensus 175 ~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 175 IEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred HHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 3455675 6999999999988888777753
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.51 E-value=8.7e-07 Score=104.30 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=103.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCccc-cC-CCCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLL-GA-PLGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~-~p-~~gk~~vlfiDD 482 (583)
++||+||+|||||.+++.++..+.. .....+.+++|.........+++... .....++.+ .. ......|+++||
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~-~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFD-SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhc-CCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEee
Confidence 5899999999999999999887632 23356777777654332222222110 000000000 00 001125999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC------C---------------CCCCCh
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG------G---------------RMPLTP 541 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~------g---------------r~~l~~ 541 (583)
+....++ +...|.|+++.|.+-|. ....+...+..+|+|+|.... | +..+.|
T Consensus 679 ieka~~~------v~~~Ll~ile~g~l~d~-~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P 751 (857)
T PRK10865 679 VEKAHPD------VFNILLQVLDDGRLTDG-QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRP 751 (857)
T ss_pred hhhCCHH------HHHHHHHHHhhCceecC-CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccH
Confidence 9866554 67889999998866553 345566778889999887421 0 234678
Q ss_pred hhhccc-eEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 542 RFVRHF-GLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 542 Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
.|+.++ .++.+.+++.+.+..|....+....
T Consensus 752 ELlnRld~iivF~PL~~edl~~Iv~~~L~~l~ 783 (857)
T PRK10865 752 EFINRIDEVVVFHPLGEQHIASIAQIQLQRLY 783 (857)
T ss_pred HHHHhCCeeEecCCCCHHHHHHHHHHHHHHHH
Confidence 899999 6888899999999999999887643
No 116
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.51 E-value=5.9e-07 Score=97.05 Aligned_cols=152 Identities=19% Similarity=0.302 Sum_probs=85.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChH----HHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSA----RTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~----~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
+.++||+||||||||++++.+++.+ +..++.++.+..+.+. ++...+..-+.. .. +......+.|+|||
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l----~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~-~~--~~~~~a~~gIi~iD 180 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL----DVPFAIADATTLTEAGYVGEDVENILLKLLQA-AD--YDVEKAQRGIVYID 180 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh----CCCceecchhhcccCCcccchHHHHHHHHHHh-cc--ccHHHcCCcEEEEe
Confidence 4689999999999999999998876 2345555555544321 222332222221 11 11122346799999
Q ss_pred CCCCCCcccCC--------CCChHHHHHHHHHhCCeeec-C-C------CeeE--eecCeEEEEecCCCC----------
Q psy17974 482 DVNMPKLETYG--------AQPPIELLRQFLDFGGLYDR-D-K------MFWK--TLQDVVLCTACAPPG---------- 533 (583)
Q Consensus 482 Dln~p~~d~yg--------~q~~lElLRq~ld~~g~yd~-~-~------~~~~--~i~~i~~iaa~~p~~---------- 533 (583)
|++.......+ ...+...|-+++| |+.... + . ..+. .-.|+.|||+-+-++
T Consensus 181 EIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~ 259 (412)
T PRK05342 181 EIDKIARKSENPSITRDVSGEGVQQALLKILE-GTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLG 259 (412)
T ss_pred chhhhccccCCCCcCCCcccHHHHHHHHHHHh-cCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHh
Confidence 99987654211 1124455556667 443221 1 1 1111 224555553322110
Q ss_pred ----C-C---C--C--------------------CCChhhhccce-EEEeCCCCHHHHHHHHH
Q psy17974 534 ----G-G---R--M--------------------PLTPRFVRHFG-LLSLPSPTEDTLKVIFK 565 (583)
Q Consensus 534 ----~-g---r--~--------------------~l~~Rllr~f~-vi~i~~p~~~sl~~I~~ 565 (583)
| + + . -+.|.|+.|+. ++.+.+.+.++|..|..
T Consensus 260 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 260 KKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred hcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 0 0 0 0 14667777775 78888999999999997
No 117
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.8e-07 Score=104.84 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=103.3
Q ss_pred HHHHHHHhc-CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 397 SIMEKLLLV-NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 397 ~ll~~~l~~-~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
.+++.|... +.|.+|+|+||+|||+++..++...-+. .+..++.+..++..-... +.+.++.|-+++..
T Consensus 181 r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGak----yRGeFEeRlk~vl~ 256 (786)
T COG0542 181 RTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAK----YRGEFEERLKAVLK 256 (786)
T ss_pred HHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccc----ccCcHHHHHHHHHH
Confidence 345555554 4588999999999999999998765221 234454554443221111 22334444444432
Q ss_pred CC-CCCeEEEEecCCCCCCccc--CC-CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChhhh
Q psy17974 470 AP-LGKRLAVFVDDVNMPKLET--YG-AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFV 544 (583)
Q Consensus 470 p~-~gk~~vlfiDDln~p~~d~--yg-~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~Rll 544 (583)
.- ...+.|+||||+|+.--.. -| +-.+..+|...+..| .+++|||++.... ...+=+++|.
T Consensus 257 ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--------------eL~~IGATT~~EYRk~iEKD~AL~ 322 (786)
T COG0542 257 EVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--------------ELRCIGATTLDEYRKYIEKDAALE 322 (786)
T ss_pred HHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--------------CeEEEEeccHHHHHHHhhhchHHH
Confidence 21 1228899999999854221 11 234667888887755 4678999876542 2356689999
Q ss_pred ccceEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 545 RHFGLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 545 r~f~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
|||..|.+++|+.++-..|...+-..+-
T Consensus 323 RRFQ~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 323 RRFQKVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred hcCceeeCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887755443
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=2.2e-06 Score=82.75 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=83.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhccc--------------------CCceEEEEEeccC-CChHHHHHHHHhhhhhhcC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLAS--------------------NTWAALTINFSAQ-TSSARTQEILEGKLDKRTK 465 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~--------------------~~~~~~~i~fS~~-Tt~~~lq~~ie~~l~~~~~ 465 (583)
+.+||+||+|+|||++++.+++.+... .......+...+. .+.+++..++ ..+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~~--- 90 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELV-EFLSR--- 90 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHH-HHHcc---
Confidence 358999999999999999998876321 0111233433332 3334444433 22321
Q ss_pred ccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc
Q psy17974 466 TLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR 545 (583)
Q Consensus 466 ~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr 545 (583)
.|..+.+-|++|||++....+ ..+.|...++.. -.++.+|.+++.+ ..+.+.+.+
T Consensus 91 ---~~~~~~~kviiide~~~l~~~------~~~~Ll~~le~~------------~~~~~~il~~~~~----~~l~~~i~s 145 (188)
T TIGR00678 91 ---TPQESGRRVVIIEDAERMNEA------AANALLKTLEEP------------PPNTLFILITPSP----EKLLPTIRS 145 (188)
T ss_pred ---CcccCCeEEEEEechhhhCHH------HHHHHHHHhcCC------------CCCeEEEEEECCh----HhChHHHHh
Confidence 233455668899998765443 244455555521 1245566666544 368899999
Q ss_pred cceEEEeCCCCHHHHHHHHHHH
Q psy17974 546 HFGLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 546 ~f~vi~i~~p~~~sl~~I~~~~ 567 (583)
++.++.+++|+.+++..+....
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc
Confidence 9999999999999998887765
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=5.3e-07 Score=100.72 Aligned_cols=141 Identities=15% Similarity=0.175 Sum_probs=81.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcc-cCCceEEEEEeccCCChHHHHHHHHh-hhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLA-SNTWAALTINFSAQTSSARTQEILEG-KLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~-~~~~~~~~i~fS~~Tt~~~lq~~ie~-~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
.+++|+|++|+|||.|++++.+.+.. ..++.+.+++...-+ +.+...+.. .++... ..|. +.-+++||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~--~el~~al~~~~~~~f~-~~y~----~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT--NEFINSIRDGKGDSFR-RRYR----EMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH--HHHHHHHHhccHHHHH-HHhh----cCCEEEEehhc
Confidence 46999999999999999999886532 124556665432211 111111111 111111 1111 12478999999
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC-CCCCCCCCCChhhhccce---EEEeCCCCHHHH
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA-PPGGGRMPLTPRFVRHFG---LLSLPSPTEDTL 560 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~-p~~~gr~~l~~Rllr~f~---vi~i~~p~~~sl 560 (583)
.-..........++++..+.+.| -++|.|++ +|. .-..+.+||.+||. ++.|..|+.+..
T Consensus 388 ~l~gke~tqeeLF~l~N~l~e~g---------------k~IIITSd~~P~-eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 388 FLEDKESTQEEFFHTFNTLHNAN---------------KQIVLSSDRPPK-QLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred cccCCHHHHHHHHHHHHHHHhcC---------------CCEEEecCCChH-hhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 76543211112334444444322 12344444 343 22357899999994 899999999999
Q ss_pred HHHHHHHhcc
Q psy17974 561 KVIFKVRTSP 570 (583)
Q Consensus 561 ~~I~~~~l~~ 570 (583)
..|.......
T Consensus 452 ~aIL~kka~~ 461 (617)
T PRK14086 452 IAILRKKAVQ 461 (617)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 120
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.49 E-value=1.4e-06 Score=92.29 Aligned_cols=143 Identities=18% Similarity=0.270 Sum_probs=89.7
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..|+ .+||+||||+|||++++.+++.+.... ...++.++-+...+..++.++
T Consensus 26 l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (355)
T TIGR02397 26 LKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREI 105 (355)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHH
Confidence 334455543 479999999999999999988763111 123344444434455555555
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. +. +.|..+++-|++|||.+.-..+ ....+|+.+ +.. ..++.+|.+++.+.
T Consensus 106 ~~~-~~------~~p~~~~~~vviidea~~l~~~-----~~~~Ll~~l-e~~------------~~~~~lIl~~~~~~-- 158 (355)
T TIGR02397 106 LDN-VK------YAPSSGKYKVYIIDEVHMLSKS-----AFNALLKTL-EEP------------PEHVVFILATTEPH-- 158 (355)
T ss_pred HHH-Hh------cCcccCCceEEEEeChhhcCHH-----HHHHHHHHH-hCC------------ccceeEEEEeCCHH--
Confidence 432 22 2344455568889998754332 123344433 421 13466666665543
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+++.++.++.|+.+++..+...+++.
T Consensus 159 --~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 159 --KIPATILSRCQRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred --HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH
Confidence 577889999999999999999999888877654
No 121
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.2e-07 Score=103.37 Aligned_cols=156 Identities=19% Similarity=0.319 Sum_probs=117.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCccccCC-CCC-eEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLGAP-LGK-RLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~p~-~gk-~~vlfiDD 482 (583)
.+|++||+|+|||-++++++..+... +-..+++++|.......+.++|.+. +-.-.+|.+.-. ..+ ..|+.+||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~-e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDE 601 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGD-EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDE 601 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCC-CccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEech
Confidence 45999999999999999999988533 4568899999877666666666432 323334444322 233 47999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-------C-----------------CCC
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-------G-----------------RMP 538 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-------g-----------------r~~ 538 (583)
+--+-+| ++.++=|.+|.|..-|.+. ..+...|+.+|.|+|-... + +..
T Consensus 602 IEKAHpd------V~nilLQVlDdGrLTD~~G-r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~ 674 (786)
T COG0542 602 IEKAHPD------VFNLLLQVLDDGRLTDGQG-RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKH 674 (786)
T ss_pred hhhcCHH------HHHHHHHHhcCCeeecCCC-CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhh
Confidence 9888776 7899999999998888654 5677889999999885421 1 134
Q ss_pred CChhhhccce-EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 539 LTPRFVRHFG-LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 539 l~~Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
..|.|++|+. +|.+.+.+.+.+..|....+...
T Consensus 675 F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 675 FRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred CCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 5677888887 99999999999999999888654
No 122
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=2.1e-07 Score=101.73 Aligned_cols=168 Identities=19% Similarity=0.201 Sum_probs=92.6
Q ss_pred cCCCCCCccceeeCchhhhHHHHHHHHHh-cC--CceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHH
Q psy17974 376 YDPTMPFFDMMVPTIDTIRFGSIMEKLLL-VN--HPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSAR 451 (583)
Q Consensus 376 ~~~~~~~~~i~VpT~dt~r~~~ll~~~l~-~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~ 451 (583)
+++...|.+ ||..+...........+.. .+ .|++|+||+|+|||++++++.+.+... .+..+.+++. +.
T Consensus 98 l~~~~tFdn-Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~ 170 (440)
T PRK14088 98 LNPDYTFEN-FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EK 170 (440)
T ss_pred CCCCCcccc-cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HH
Confidence 344444444 4545444333333333333 33 489999999999999999998875321 1344555543 22
Q ss_pred HHHHHHhhh-----hhhcCccccCCCCCeEEEEecCCCCCCcccCCCC-ChHHHHHHHHHhCCeeecCCCeeEeecCeEE
Q psy17974 452 TQEILEGKL-----DKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVL 525 (583)
Q Consensus 452 lq~~ie~~l-----~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ 525 (583)
+..-+...+ +... ..|. .+.-+++|||++.... +.++| ..+++++.+.+.|. ..+
T Consensus 171 f~~~~~~~~~~~~~~~f~-~~~~---~~~dvLlIDDi~~l~~-~~~~q~elf~~~n~l~~~~k--------------~iI 231 (440)
T PRK14088 171 FLNDLVDSMKEGKLNEFR-EKYR---KKVDVLLIDDVQFLIG-KTGVQTELFHTFNELHDSGK--------------QIV 231 (440)
T ss_pred HHHHHHHHHhcccHHHHH-HHHH---hcCCEEEEechhhhcC-cHHHHHHHHHHHHHHHHcCC--------------eEE
Confidence 221111111 1100 0111 1234899999986422 12233 23444555544321 133
Q ss_pred EEecCCCCCCCCCCChhhhccce---EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 526 CTACAPPGGGRMPLTPRFVRHFG---LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 526 iaa~~p~~~gr~~l~~Rllr~f~---vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+++..+|.. -..+.+|+.+||. ++.++.|+.+++..|.......
T Consensus 232 itsd~~p~~-l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 232 ICSDREPQK-LSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred EECCCCHHH-HHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 333344431 1236789998887 8999999999999999988763
No 123
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2e-06 Score=97.22 Aligned_cols=142 Identities=20% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccCC--------------------ceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASNT--------------------WAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~~--------------------~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..|+ ..||+||+|+|||++++.+++.+.-... ..++.++-+..+..+++.++
T Consensus 28 L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~l 107 (647)
T PRK07994 28 LANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTREL 107 (647)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHH
Confidence 444555543 3699999999999999999887621110 01233333333555666555
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ .+. |.|..|++-|++|||+|+-..+. ...||+ .+|.- ...+.||.+|+.+.
T Consensus 108 i~-~~~------~~p~~g~~KV~IIDEah~Ls~~a-----~NALLK-tLEEP------------p~~v~FIL~Tt~~~-- 160 (647)
T PRK07994 108 LD-NVQ------YAPARGRFKVYLIDEVHMLSRHS-----FNALLK-TLEEP------------PEHVKFLLATTDPQ-- 160 (647)
T ss_pred HH-HHH------hhhhcCCCEEEEEechHhCCHHH-----HHHHHH-HHHcC------------CCCeEEEEecCCcc--
Confidence 43 222 33555677799999999976542 345555 55521 23567777777654
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.|.+-+++|+..+.+..++.+++......++.
T Consensus 161 --kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 161 --KLPVTILSRCLQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred --ccchHHHhhheEeeCCCCCHHHHHHHHHHHHH
Confidence 68888999999999999999999888877764
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.48 E-value=1e-06 Score=103.85 Aligned_cols=154 Identities=20% Similarity=0.291 Sum_probs=104.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCcccc-C-CCCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLG-A-PLGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~-p-~~gk~~vlfiDD 482 (583)
++||+||+|||||.+++.++..+. .....++.+++|..+....+.+.+.+. .....++.+. . ......|+++||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~-~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDe 675 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLF-DDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDE 675 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc-CCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEec
Confidence 489999999999999999998773 334567888888765543333332111 0000011110 0 011235999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-------C--------------CCCCCh
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-------G--------------RMPLTP 541 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-------g--------------r~~l~~ 541 (583)
+.-..++ +...|-|++|.|.+-|. ....+...++.+|+|+|-... + +....|
T Consensus 676 ieka~~~------v~~~Ll~~l~~g~l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~p 748 (852)
T TIGR03346 676 VEKAHPD------VFNVLLQVLDDGRLTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRP 748 (852)
T ss_pred cccCCHH------HHHHHHHHHhcCceecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCH
Confidence 9876554 57788899998877664 345666788889999987321 1 223567
Q ss_pred hhhccc-eEEEeCCCCHHHHHHHHHHHhc
Q psy17974 542 RFVRHF-GLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 542 Rllr~f-~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.|+.++ .++.+.+++.+.+..|....+.
T Consensus 749 el~~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred HHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 788888 4788889999999999888775
No 125
>PRK06620 hypothetical protein; Validated
Probab=98.47 E-value=9.3e-07 Score=87.44 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=71.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||+|||||++++.+.+.. +. ..+ + ... ..+ ..+ ++.-+++|||++--
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----~~--~~~---~----~~~--~~~--------~~~----~~~d~lliDdi~~~ 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----NA--YII---K----DIF--FNE--------EIL----EKYNAFIIEDIENW 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----CC--EEc---c----hhh--hch--------hHH----hcCCEEEEeccccc
Confidence 459999999999999999876643 11 111 1 000 000 001 12247899999821
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce---EEEeCCCCHHHHHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG---LLSLPSPTEDTLKVI 563 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~---vi~i~~p~~~sl~~I 563 (583)
+ ......++..+.+.|. ..++++..+|.. ..+ +++.+|+. ++.+.+|+.+.+..+
T Consensus 98 ~-----~~~lf~l~N~~~e~g~--------------~ilits~~~p~~--l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~ 155 (214)
T PRK06620 98 Q-----EPALLHIFNIINEKQK--------------YLLLTSSDKSRN--FTL-PDLSSRIKSVLSILLNSPDDELIKIL 155 (214)
T ss_pred h-----HHHHHHHHHHHHhcCC--------------EEEEEcCCCccc--cch-HHHHHHHhCCceEeeCCCCHHHHHHH
Confidence 1 0123445555555442 246666666652 247 89999998 999999999999888
Q ss_pred HHHHhc
Q psy17974 564 FKVRTS 569 (583)
Q Consensus 564 ~~~~l~ 569 (583)
......
T Consensus 156 l~k~~~ 161 (214)
T PRK06620 156 IFKHFS 161 (214)
T ss_pred HHHHHH
Confidence 877765
No 126
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=1.9e-06 Score=97.24 Aligned_cols=143 Identities=21% Similarity=0.253 Sum_probs=92.8
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-+..+..+.+.++
T Consensus 28 L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRel 107 (709)
T PRK08691 28 LQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREV 107 (709)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHH
Confidence 44445554 3589999999999999999988752110 012233443444555566655
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. +. +.|..+++-|++|||+++-..+ ....|...++.- ...+.||.+++.+.
T Consensus 108 le~-a~------~~P~~gk~KVIIIDEad~Ls~~------A~NALLKtLEEP------------p~~v~fILaTtd~~-- 160 (709)
T PRK08691 108 LEN-AQ------YAPTAGKYKVYIIDEVHMLSKS------AFNAMLKTLEEP------------PEHVKFILATTDPH-- 160 (709)
T ss_pred HHH-HH------hhhhhCCcEEEEEECccccCHH------HHHHHHHHHHhC------------CCCcEEEEEeCCcc--
Confidence 532 11 3344456678999999986543 233344444421 13467777776554
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+++|+..+.+..++.+++......+++.
T Consensus 161 --kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k 193 (709)
T PRK08691 161 --KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS 193 (709)
T ss_pred --ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 577888899999999999999999888887764
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.46 E-value=9.4e-07 Score=103.90 Aligned_cols=155 Identities=17% Similarity=0.245 Sum_probs=105.2
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCcccc-C-CCCCeEEEEecCC
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLG-A-PLGKRLAVFVDDV 483 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~-p-~~gk~~vlfiDDl 483 (583)
+||+||+|+|||.+++.+++.+.. .....+.+++|..+....+.+.+.+. .....++.+. . ......|+++||+
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~-~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFG-SEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC-CccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 799999999999999999988732 23456778877766544444433211 0000111110 0 0112368999999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---------CC------------------
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---------GR------------------ 536 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---------gr------------------ 536 (583)
+.+.++ +...|.|++|.|-.-|.. ..-+...++.||.|+|.... |.
T Consensus 621 eka~~~------v~~~Llq~le~g~~~d~~-g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~ 693 (821)
T CHL00095 621 EKAHPD------IFNLLLQILDDGRLTDSK-GRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNL 693 (821)
T ss_pred hhCCHH------HHHHHHHHhccCceecCC-CcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHH
Confidence 977655 688999999988766654 34566789999999886421 10
Q ss_pred ------CCCChhhhccc-eEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 537 ------MPLTPRFVRHF-GLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 537 ------~~l~~Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
....|.|+.|+ .||.+.+.+.+++..|....+...
T Consensus 694 ~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l 735 (821)
T CHL00095 694 VNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNL 735 (821)
T ss_pred HHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 01456788888 799999999999999999888754
No 128
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=6.8e-07 Score=97.95 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=82.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcc-cCCceEEEEEeccCCChHHHHHHHHhhhhhh------cCccccCCCCCeEEEE
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLA-SNTWAALTINFSAQTSSARTQEILEGKLDKR------TKTLLGAPLGKRLAVF 479 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~-~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~------~~~~~~p~~gk~~vlf 479 (583)
.|++|+|++|+|||++++++.+.+.. ..++.+++++. ..+..-+...+... .+..|. +.-+++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~~~~~~~~~~~~----~~dvLi 211 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTHKEIEQFKNEIC----QNDVLI 211 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhhhHHHHHHHHhc----cCCEEE
Confidence 57999999999999999999886521 22455555432 23222222111110 001111 223789
Q ss_pred ecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec-CCCCCCCCCCChhhhccce---EEEeCCC
Q psy17974 480 VDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC-APPGGGRMPLTPRFVRHFG---LLSLPSP 555 (583)
Q Consensus 480 iDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~-~p~~~gr~~l~~Rllr~f~---vi~i~~p 555 (583)
|||++.-... ....|.|..+++.- |+..+ ++|.|+ .+|. -...+.+|+.+||. ++.+.+|
T Consensus 212 IDDiq~l~~k----~~~~e~lf~l~N~~--~~~~k---------~iIltsd~~P~-~l~~l~~rL~SR~~~Gl~~~L~~p 275 (450)
T PRK14087 212 IDDVQFLSYK----EKTNEIFFTIFNNF--IENDK---------QLFFSSDKSPE-LLNGFDNRLITRFNMGLSIAIQKL 275 (450)
T ss_pred EeccccccCC----HHHHHHHHHHHHHH--HHcCC---------cEEEECCCCHH-HHhhccHHHHHHHhCCceeccCCc
Confidence 9999875422 12345555554421 22211 234444 4453 22357899999996 8999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy17974 556 TEDTLKVIFKVRTSP 570 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~ 570 (583)
+.+++..|....++.
T Consensus 276 d~e~r~~iL~~~~~~ 290 (450)
T PRK14087 276 DNKTATAIIKKEIKN 290 (450)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998874
No 129
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.46 E-value=2.9e-06 Score=86.35 Aligned_cols=170 Identities=19% Similarity=0.234 Sum_probs=102.2
Q ss_pred cceeeCchhhhHHHHHHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNH-PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
..+.++....+....+...+..+. .++|+||+|+|||++++.+++.+. ...+....+ ++...++..+...+-..+..
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD-QERVVAAKL-VNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC-CCCeEEeee-eCCCCCHHHHHHHHHHHcCC
Confidence 457888888877777777776655 588999999999999999998763 223222221 33344555555444333321
Q ss_pred hcCcc-----c---------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEe
Q psy17974 463 RTKTL-----L---------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTA 528 (583)
Q Consensus 463 ~~~~~-----~---------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa 528 (583)
...+. + ....+++.+++|||++....+ .++.||.+.+... + . -..+.++.+
T Consensus 98 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~------~~~~l~~l~~~~~--~--~-----~~~~~vvl~ 162 (269)
T TIGR03015 98 ETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPE------LLEELRMLSNFQT--D--N-----AKLLQIFLV 162 (269)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHH------HHHHHHHHhCccc--C--C-----CCeEEEEEc
Confidence 11100 0 012567789999999876433 5788888766421 1 0 112444444
Q ss_pred cCCCCCC--CCCCChhhhcc-ceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 529 CAPPGGG--RMPLTPRFVRH-FGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 529 ~~p~~~g--r~~l~~Rllr~-f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
..|.-.. ..+-..++.++ ...+.++..+.+++...+...+..
T Consensus 163 g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 163 GQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred CCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHH
Confidence 3332110 11122345555 447889999999999988887764
No 130
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.45 E-value=2.2e-06 Score=90.35 Aligned_cols=167 Identities=15% Similarity=0.190 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-C
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-A 470 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p 470 (583)
..+....+..+...+.||||.|++||||+++++.+-... ......++.+||++.+ ... +++.+-...++.|. .
T Consensus 8 m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s-~r~~~pfv~vnc~~~~-~~~----l~~~lfG~~~g~~~ga 81 (329)
T TIGR02974 8 FLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS-KRWQGPLVKLNCAALS-ENL----LDSELFGHEAGAFTGA 81 (329)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc-CccCCCeEEEeCCCCC-hHH----HHHHHhccccccccCc
Confidence 445556677788889999999999999999999876543 2234567889998744 222 33333221222221 1
Q ss_pred --------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---CCCCCC
Q psy17974 471 --------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---GGRMPL 539 (583)
Q Consensus 471 --------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---~gr~~l 539 (583)
......++|+||++.-..+ ...-|..+++.+.+....... ..-.|+.+|+|++.+- -....+
T Consensus 82 ~~~~~G~~~~a~gGtL~Ldei~~L~~~------~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI~at~~~l~~~~~~g~f 154 (329)
T TIGR02974 82 QKRHQGRFERADGGTLFLDELATASLL------VQEKLLRVIEYGEFERVGGSQ-TLQVDVRLVCATNADLPALAAEGRF 154 (329)
T ss_pred ccccCCchhhCCCCEEEeCChHhCCHH------HHHHHHHHHHcCcEEecCCCc-eeccceEEEEechhhHHHHhhcCch
Confidence 1123468999999865443 234455667766544322222 2235899999988652 112346
Q ss_pred ChhhhccceE--EEeCCCC--HHHHHHHHHHHhccc
Q psy17974 540 TPRFVRHFGL--LSLPSPT--EDTLKVIFKVRTSPG 571 (583)
Q Consensus 540 ~~Rllr~f~v--i~i~~p~--~~sl~~I~~~~l~~~ 571 (583)
.+.|..++++ |.+|+.. .+++..+...++..+
T Consensus 155 r~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~ 190 (329)
T TIGR02974 155 RADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRM 190 (329)
T ss_pred HHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHH
Confidence 6778888864 6666655 467777877777654
No 131
>KOG0991|consensus
Probab=98.45 E-value=5.6e-07 Score=87.77 Aligned_cols=166 Identities=17% Similarity=0.293 Sum_probs=103.3
Q ss_pred eccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhcccCCc--eEEEE
Q psy17974 366 PWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLASNTW--AALTI 441 (583)
Q Consensus 366 ~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~--~~~~i 441 (583)
+|-+++.+..+. -+|-..||+. .++.+...| -++++.||||+|||+.+..+++.+-.. .| .+.-+
T Consensus 16 ~wVeKYrP~~l~-------dIVGNe~tv~---rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~-~~ke~vLEL 84 (333)
T KOG0991|consen 16 PWVEKYRPSVLQ-------DIVGNEDTVE---RLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGD-SYKEAVLEL 84 (333)
T ss_pred hHHHhhCchHHH-------HhhCCHHHHH---HHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhCh-hhhhHhhhc
Confidence 477766543322 2455556553 344555555 489999999999999999998876321 12 23345
Q ss_pred EeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeec
Q psy17974 442 NFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQ 521 (583)
Q Consensus 442 ~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~ 521 (583)
|-|..-..+-+...|....++ .+.-|| |+.-|+.+||.+.-. -|+| +.||.-+| .|..
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~---kv~lp~-grhKIiILDEADSMT---~gAQ---QAlRRtME---iyS~--------- 142 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQK---KVTLPP-GRHKIIILDEADSMT---AGAQ---QALRRTME---IYSN--------- 142 (333)
T ss_pred cCccccccHHHHHHHHHHHHh---hccCCC-CceeEEEeeccchhh---hHHH---HHHHHHHH---HHcc---------
Confidence 555544444444444333232 333455 444567789976532 3555 45777776 3432
Q ss_pred CeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHh
Q psy17974 522 DVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 522 ~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l 568 (583)
.++|.-|||... .|-..+.+|+.++.+...++..+..-...+.
T Consensus 143 ttRFalaCN~s~----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 143 TTRFALACNQSE----KIIEPIQSRCAILRYSKLSDQQILKRLLEVA 185 (333)
T ss_pred cchhhhhhcchh----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHH
Confidence 467888999865 6778889999999999988877655444433
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=98.44 E-value=1.8e-06 Score=86.51 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=76.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||+|||||.+++++.+.+.. .+..+++++.. .+......-+++ +. +--+++|||++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~------~~~~~~~~~~~~-----~~----~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLA------ELLDRGPELLDN-----LE----QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHH------HHHhhhHHHHHh-----hh----hCCEEEEechhhh
Confidence 57899999999999999998776532 23455555432 222111111111 11 0126889999865
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeCCCCHHHHHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLKVI 563 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~~I 563 (583)
..+....+....++..+.+.| ...++++..+|.. -....+++.+|| .++.+..|+.+++..|
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g--------------~~ilits~~~p~~-l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSG--------------RRLLLAASKSPRE-LPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcC--------------CEEEEeCCCCHHH-cCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 432211112333443333322 1245555555532 223568898998 7899999999999999
Q ss_pred HHHHh
Q psy17974 564 FKVRT 568 (583)
Q Consensus 564 ~~~~l 568 (583)
.....
T Consensus 175 l~~ka 179 (234)
T PRK05642 175 LQLRA 179 (234)
T ss_pred HHHHH
Confidence 88543
No 133
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.3e-06 Score=96.60 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=93.8
Q ss_pred HHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhccc--C-----------------------CceEEEEEeccCCCh
Q psy17974 398 IMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLAS--N-----------------------TWAALTINFSAQTSS 449 (583)
Q Consensus 398 ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~--~-----------------------~~~~~~i~fS~~Tt~ 449 (583)
.+..++..+ +.+||+||+|+|||++++.+++.+.-. + ...++.++-+..+..
T Consensus 27 ~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~V 106 (618)
T PRK14951 27 ALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGV 106 (618)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcccccCH
Confidence 344555554 345999999999999999998876210 0 012333443444555
Q ss_pred HHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 450 ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 450 ~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
+++.++++. + .|.|..|+.-|++|||+|+-..+. ...|+-.+|.- ...+.||.++
T Consensus 107 d~iReli~~-~------~~~p~~g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEP------------P~~~~fIL~T 161 (618)
T PRK14951 107 DEVQQLLEQ-A------VYKPVQGRFKVFMIDEVHMLTNTA------FNAMLKTLEEP------------PEYLKFVLAT 161 (618)
T ss_pred HHHHHHHHH-H------HhCcccCCceEEEEEChhhCCHHH------HHHHHHhcccC------------CCCeEEEEEE
Confidence 666665542 1 245666777789999999976653 33344444421 1345677666
Q ss_pred CCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 530 APPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+.+. .+.+-+++|+.++.+..++.+++...+..++.
T Consensus 162 td~~----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 162 TDPQ----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred CCch----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHH
Confidence 5443 46777999999999999999999888887765
No 134
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=1.4e-06 Score=78.78 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=79.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
+++.++|.||.|||||++++++++.+. ..-..+.++|...........-+...+.+. +.+ ++.++||||++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~i~iDEiq 71 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADPDLLEYFLEL----IKP---GKKYIFIDEIQ 71 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhhhhHHHHHHh----hcc---CCcEEEEehhh
Confidence 467899999999999999999998763 123456677654322111000011111111 111 45578999998
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHH
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDT 559 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~s 559 (583)
..+ ...+.++.+.|.+ .+++++.|......-.......+..+...+.+.+.+-.+
T Consensus 72 ~~~-------~~~~~lk~l~d~~-------------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 72 YLP-------DWEDALKFLVDNG-------------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhc-------cHHHHHHHHHHhc-------------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 753 2567888888844 246677765554433346677888888899998888665
No 135
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.41 E-value=2e-06 Score=85.60 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=74.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
.+.+++|+||+|||||++++.+.+... ..+..+..++++... .. +. + ....-+++|||++
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~~~~~i~~~~~~------~~----~~------~---~~~~~~liiDdi~ 100 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGRNARYLDAASPL------LA----FD------F---DPEAELYAVDDVE 100 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEehHHhH------HH----Hh------h---cccCCEEEEeChh
Confidence 457999999999999999999988652 234455666553321 10 11 0 1122378999998
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeCCCCHHHHH
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLK 561 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~ 561 (583)
....+ ..+.|.++++.. .. .. ..+.++++..+|.. ..+.+.+.++| .++.+++|+.++..
T Consensus 101 ~l~~~------~~~~L~~~~~~~--~~--~~-----~~~vl~~~~~~~~~--~~l~~~L~sr~~~~~~i~l~pl~~~~~~ 163 (227)
T PRK08903 101 RLDDA------QQIALFNLFNRV--RA--HG-----QGALLVAGPAAPLA--LPLREDLRTRLGWGLVYELKPLSDADKI 163 (227)
T ss_pred hcCch------HHHHHHHHHHHH--HH--cC-----CcEEEEeCCCCHHh--CCCCHHHHHHHhcCeEEEecCCCHHHHH
Confidence 65332 234455555421 00 00 01223333333322 23567777666 68999999998877
Q ss_pred HHHHHHh
Q psy17974 562 VIFKVRT 568 (583)
Q Consensus 562 ~I~~~~l 568 (583)
.+...+.
T Consensus 164 ~~l~~~~ 170 (227)
T PRK08903 164 AALKAAA 170 (227)
T ss_pred HHHHHHH
Confidence 7766554
No 136
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.41 E-value=5.5e-06 Score=93.07 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~ 464 (583)
++=..+...+....++.+...+.||||.|++||||+++++.+..... ...-.++.+||+..+. .. +++.+-...
T Consensus 198 liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~-r~~~pfv~i~c~~~~~-~~----~~~~lfg~~ 271 (534)
T TIGR01817 198 IIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP-RAKRPFVKVNCAALSE-TL----LESELFGHE 271 (534)
T ss_pred eEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC-CCCCCeEEeecCCCCH-HH----HHHHHcCCC
Confidence 33344445666677788888899999999999999999998876542 2345678899887533 22 333332222
Q ss_pred Cccc-cC--------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC--
Q psy17974 465 KTLL-GA--------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-- 533 (583)
Q Consensus 465 ~~~~-~p--------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-- 533 (583)
++.| |+ ......++||||++....+ .-..|-++++.+.+....... ..-.|+.+|+|++.+-
T Consensus 272 ~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~------~Q~~Ll~~l~~~~~~~~~~~~-~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 272 KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA------FQAKLLRVLQEGEFERVGGNR-TLKVDVRLVAATNRDLEE 344 (534)
T ss_pred CCccCCCCcCCCCcccccCCCeEEEechhhCCHH------HHHHHHHHHhcCcEEECCCCc-eEeecEEEEEeCCCCHHH
Confidence 2222 11 1223468999999875544 234455667766654322222 1224789999987652
Q ss_pred -CCCCCCChhhhccceE--EEeCCCC--HHHHHHHHHHHhccc
Q psy17974 534 -GGRMPLTPRFVRHFGL--LSLPSPT--EDTLKVIFKVRTSPG 571 (583)
Q Consensus 534 -~gr~~l~~Rllr~f~v--i~i~~p~--~~sl~~I~~~~l~~~ 571 (583)
-....+.+.|..++++ |.+|+.. .+++..+...++..+
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~ 387 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKF 387 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHH
Confidence 1233566777778775 5566655 467877877777654
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.1e-06 Score=95.06 Aligned_cols=145 Identities=17% Similarity=0.240 Sum_probs=94.5
Q ss_pred HHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHH
Q psy17974 397 SIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 397 ~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq 453 (583)
..+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-+..+..+++.
T Consensus 26 ~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR 105 (624)
T PRK14959 26 AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK 105 (624)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHH
Confidence 4455556554 4678999999999999999988763110 1123344333334445554
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
.+ ...+. +.|..+++-|++|||+++-..+ ....|...+|.- ...+.||.+++.+.
T Consensus 106 ~L-~~~~~------~~p~~g~~kVIIIDEad~Lt~~------a~naLLk~LEEP------------~~~~ifILaTt~~~ 160 (624)
T PRK14959 106 RL-KEAIG------YAPMEGRYKVFIIDEAHMLTRE------AFNALLKTLEEP------------PARVTFVLATTEPH 160 (624)
T ss_pred HH-HHHHH------hhhhcCCceEEEEEChHhCCHH------HHHHHHHHhhcc------------CCCEEEEEecCChh
Confidence 42 22222 2344566778999999987644 244455556531 13567777776543
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+|+.++.+..++.+++..++..++..
T Consensus 161 ----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~ 193 (624)
T PRK14959 161 ----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR 193 (624)
T ss_pred ----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH
Confidence 567778999999999999999999888877653
No 138
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=5.1e-06 Score=93.37 Aligned_cols=142 Identities=14% Similarity=0.228 Sum_probs=93.2
Q ss_pred HHHHHhcCC--c-eEEEccCCCcHHHHHHHHHHhhccc----------------------CCceEEEEEeccCCChHHHH
Q psy17974 399 MEKLLLVNH--P-VMFTGVTGVGKTVVARSILNKLLAS----------------------NTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 399 l~~~l~~~~--~-vLL~Gp~GtGKT~li~~~l~~l~~~----------------------~~~~~~~i~fS~~Tt~~~lq 453 (583)
+..++..++ | .||+||+|||||++++.+++.+.-. ....++.++-+.....+++.
T Consensus 25 L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iR 104 (584)
T PRK14952 25 LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTR 104 (584)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHH
Confidence 455555553 3 6999999999999999998876310 11234444433333445554
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++++ .+ .|.|..+++-|++|||.|+-..+ ..+.|+-.+|. ....+.||.+++.+.
T Consensus 105 el~~-~~------~~~P~~~~~KVvIIDEah~Lt~~------A~NALLK~LEE------------pp~~~~fIL~tte~~ 159 (584)
T PRK14952 105 ELRD-RA------FYAPAQSRYRIFIVDEAHMVTTA------GFNALLKIVEE------------PPEHLIFIFATTEPE 159 (584)
T ss_pred HHHH-HH------HhhhhcCCceEEEEECCCcCCHH------HHHHHHHHHhc------------CCCCeEEEEEeCChH
Confidence 4332 22 23454556668999999997654 34445555552 123567777776553
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.+..++.+++......+++
T Consensus 160 ----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 160 ----KVLPTIRSRTHHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred ----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHH
Confidence 68889999999999999999998877777665
No 139
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.40 E-value=4.8e-06 Score=87.69 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhh----
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKL---- 460 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l---- 460 (583)
++-..+...+....+..+...+.||||+|++||||+++++.+-... ....-..+.++|+... ...+...+-+.-
T Consensus 8 liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s-~r~~~pfv~v~c~~~~-~~~~~~~lfg~~~~~~ 85 (326)
T PRK11608 8 LLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS-SRWQGPFISLNCAALN-ENLLDSELFGHEAGAF 85 (326)
T ss_pred cEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC-CccCCCeEEEeCCCCC-HHHHHHHHcccccccc
Confidence 3444455666777788888999999999999999999999876543 2233467789998744 333333221110
Q ss_pred ---hhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---C
Q psy17974 461 ---DKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---G 534 (583)
Q Consensus 461 ---~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---~ 534 (583)
.....+.+. .....++|+||++.-..+ ..+-|..+++.+.+......... -.++.+|+|++.+- .
T Consensus 86 ~g~~~~~~g~l~--~a~gGtL~l~~i~~L~~~------~Q~~L~~~l~~~~~~~~g~~~~~-~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 86 TGAQKRHPGRFE--RADGGTLFLDELATAPML------VQEKLLRVIEYGELERVGGSQPL-QVNVRLVCATNADLPAMV 156 (326)
T ss_pred CCcccccCCchh--ccCCCeEEeCChhhCCHH------HHHHHHHHHhcCcEEeCCCCcee-eccEEEEEeCchhHHHHH
Confidence 000111111 122457899999875543 34556667776654332222222 24789999987652 1
Q ss_pred CCCCCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 535 GRMPLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 535 gr~~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
....+.+.|..+|++ |.+|+..+ +++..+...++..+
T Consensus 157 ~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~ 197 (326)
T PRK11608 157 AEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQM 197 (326)
T ss_pred HcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHH
Confidence 233567888888864 66666543 56777777776554
No 140
>PRK08181 transposase; Validated
Probab=98.39 E-value=4.6e-07 Score=92.48 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=74.6
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhh-hhhcCccccCCCCCeE
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKL-DKRTKTLLGAPLGKRL 476 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l-~~~~~~~~~p~~gk~~ 476 (583)
..+.++..+.+++|+||||||||.++.++...+. ..++.+.+++. ..+...+.... +......+. .-.+.-
T Consensus 98 ~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~------~~L~~~l~~a~~~~~~~~~l~-~l~~~d 169 (269)
T PRK08181 98 AGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRT------TDLVQKLQVARRELQLESAIA-KLDKFD 169 (269)
T ss_pred HHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeH------HHHHHHHHHHHhCCcHHHHHH-HHhcCC
Confidence 3445778899999999999999999999987653 23555655532 23332221110 000000000 012233
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-CC-----CC----CCCChhhhcc
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GG-----GR----MPLTPRFVRH 546 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-~~-----gr----~~l~~Rllr~ 546 (583)
+++|||+.....+..+.+...+++..-.+.+ .+|.|+|-+ +. |. ..+-.|++.|
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~----------------s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~ 233 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERR----------------SILITANQPFGEWNRVFPDPAMTLAAVDRLVHH 233 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCC----------------CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcC
Confidence 8899999886655444333444444332211 133444443 21 11 1244788889
Q ss_pred ceEEEeCCCC
Q psy17974 547 FGLLSLPSPT 556 (583)
Q Consensus 547 f~vi~i~~p~ 556 (583)
+.+|.+.-.|
T Consensus 234 ~~~i~~~g~s 243 (269)
T PRK08181 234 ATIFEMNVES 243 (269)
T ss_pred ceEEecCCcc
Confidence 9999987654
No 141
>KOG0735|consensus
Probab=98.38 E-value=1.4e-06 Score=96.33 Aligned_cols=167 Identities=15% Similarity=0.220 Sum_probs=107.5
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC--CChHHHHHHHHhhhhh
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ--TSSARTQEILEGKLDK 462 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~--Tt~~~lq~~ie~~l~~ 462 (583)
+.+|..+-.-..+.+.. +-...++||.||+|||||.+++++++.+.....+-+..+.||.. ++-+.+|+.+++-+..
T Consensus 411 i~~~s~kke~~n~~~sp-v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse 489 (952)
T KOG0735|consen 411 IQVPSYKKENANQELSP-VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSE 489 (952)
T ss_pred eecchhhhhhhhhhccc-ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHH
Confidence 45565444333344444 44567999999999999999999999885444455556777663 4456677777655432
Q ss_pred hcCccccCCCCCeEEEEecCCCCCCc--ccCCC------CChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 463 RTKTLLGAPLGKRLAVFVDDVNMPKL--ETYGA------QPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 463 ~~~~~~~p~~gk~~vlfiDDln~p~~--d~yg~------q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
.-.|+ +.|+++||++.-.. +.-++ +....+|.|++..-+=+. ..+.+||+.+.-
T Consensus 490 --~~~~~-----PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~---------~~ia~Iat~qe~-- 551 (952)
T KOG0735|consen 490 --ALWYA-----PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRN---------RKIAVIATGQEL-- 551 (952)
T ss_pred --HHhhC-----CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccC---------cEEEEEEechhh--
Confidence 11234 34999999997432 11222 234567777775322111 137888886543
Q ss_pred CCCCCChhhhc--cce-EEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 535 GRMPLTPRFVR--HFG-LLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 535 gr~~l~~Rllr--~f~-vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
..++++|.. .|. +++++.|.......|...++...+
T Consensus 552 --qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 552 --QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred --hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 367777743 554 799999999988888877776554
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=5e-06 Score=94.71 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=91.7
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCC-----------------ceEEEEEeccCCChHHHHHHHHh
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNT-----------------WAALTINFSAQTSSARTQEILEG 458 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~-----------------~~~~~i~fS~~Tt~~~lq~~ie~ 458 (583)
+...+..+ +..|++||+|+|||++++.+++.+.-.+. ..++.+.-++....+++..+++
T Consensus 30 L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie- 108 (725)
T PRK07133 30 LKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIE- 108 (725)
T ss_pred HHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHH-
Confidence 44555554 34699999999999999999887621110 1112222222234455555443
Q ss_pred hhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCC
Q psy17974 459 KLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMP 538 (583)
Q Consensus 459 ~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~ 538 (583)
.+. +.|..+++-|++|||+++-..+ ....|...+|.- ...+.||.+++.+. .
T Consensus 109 ~~~------~~P~~g~~KV~IIDEa~~LT~~------A~NALLKtLEEP------------P~~tifILaTte~~----K 160 (725)
T PRK07133 109 NVK------NLPTQSKYKIYIIDEVHMLSKS------AFNALLKTLEEP------------PKHVIFILATTEVH----K 160 (725)
T ss_pred HHH------hchhcCCCEEEEEEChhhCCHH------HHHHHHHHhhcC------------CCceEEEEEcCChh----h
Confidence 222 2455677778999999986543 344445555521 23456776665443 6
Q ss_pred CChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 539 LTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 539 l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
|.+.+.+|+.++.+..++.+++......++.
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHH
Confidence 8889999999999999999999988877654
No 143
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.3e-06 Score=90.48 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=88.9
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC-------------------CceEEEEEeccCCChHHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN-------------------TWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~-------------------~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
+..++..++ .+||+||||||||++++.+++.+.-.. ...+..++-+.....+.++.+
T Consensus 26 L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l- 104 (504)
T PRK14963 26 LLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDL- 104 (504)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHH-
Confidence 444455553 359999999999999999988763110 112334443333344444443
Q ss_pred HhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCC
Q psy17974 457 EGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGR 536 (583)
Q Consensus 457 e~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr 536 (583)
...+. +.|..+++-|++|||.+....+ .++.|+..++.. -..+.+|.+++.+
T Consensus 105 ~~~~~------~~p~~~~~kVVIIDEad~ls~~------a~naLLk~LEep------------~~~t~~Il~t~~~---- 156 (504)
T PRK14963 105 REKVL------LAPLRGGRKVYILDEAHMMSKS------AFNALLKTLEEP------------PEHVIFILATTEP---- 156 (504)
T ss_pred HHHHh------hccccCCCeEEEEECccccCHH------HHHHHHHHHHhC------------CCCEEEEEEcCCh----
Confidence 22222 1243455668899999765332 233344444421 1245666666544
Q ss_pred CCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 537 MPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 537 ~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
..+.+.+.+++.++.+..++.+++......+++.
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHH
Confidence 3688889999999999999999999888877653
No 144
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.6e-06 Score=93.15 Aligned_cols=142 Identities=18% Similarity=0.245 Sum_probs=92.6
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..+ +..||+||+|+|||++++.+++.+.-.. ...++.++-+..+..+++.++
T Consensus 28 L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l 107 (527)
T PRK14969 28 LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMREL 107 (527)
T ss_pred HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHH
Confidence 44445554 3469999999999999999988762110 012334444445566666655
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. +. +.|..|++-|++|||+++-..+. ...+|+. ++.- ...+.||.+++.+.
T Consensus 108 ~~~-~~------~~p~~~~~kVvIIDEad~ls~~a-----~naLLK~-LEep------------p~~~~fIL~t~d~~-- 160 (527)
T PRK14969 108 LDN-AQ------YAPTRGRFKVYIIDEVHMLSKSA-----FNAMLKT-LEEP------------PEHVKFILATTDPQ-- 160 (527)
T ss_pred HHH-Hh------hCcccCCceEEEEcCcccCCHHH-----HHHHHHH-HhCC------------CCCEEEEEEeCChh--
Confidence 533 22 34556777899999998865432 2344444 4421 13566777775543
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.+..++.+++......++.
T Consensus 161 --kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 161 --KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred --hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 46666899999999999999998887777664
No 145
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=2.4e-06 Score=79.60 Aligned_cols=149 Identities=18% Similarity=0.215 Sum_probs=88.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCC-----ceEEEEEeccCCChH---HHHHHHHhhhhhhcCcc---c--cCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNT-----WAALTINFSAQTSSA---RTQEILEGKLDKRTKTL---L--GAPLG 473 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~-----~~~~~i~fS~~Tt~~---~lq~~ie~~l~~~~~~~---~--~p~~g 473 (583)
+.++|+|++|+|||++++.++..+..... ..++.+++....... .+.+.+........... . .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35899999999999999998876632221 123333333322211 23344433322111100 0 01245
Q ss_pred CeEEEEecCCCCCCccc--CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEE
Q psy17974 474 KRLAVFVDDVNMPKLET--YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLS 551 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~--yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~ 551 (583)
++++++||.++-...+. .+.++..++|++++.... ..++.++-++.|.... . -.+.......+.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~-----------~~~~~liit~r~~~~~--~-~~~~~~~~~~~~ 146 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL-----------PPGVKLIITSRPRAFP--D-LRRRLKQAQILE 146 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc-----------CCCCeEEEEEcCChHH--H-HHHhcCCCcEEE
Confidence 68889999998766532 134567788888887421 2357788888765311 1 233344447899
Q ss_pred eCCCCHHHHHHHHHHHhc
Q psy17974 552 LPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~ 569 (583)
++..+++++.+.+.+++.
T Consensus 147 l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 147 LEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred ECCCCHHHHHHHHHHHhh
Confidence 999999999988887765
No 146
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.35 E-value=5.2e-06 Score=92.49 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=109.7
Q ss_pred ccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 383 FDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 383 ~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
.+++-..+...+....++.+...+.||||.|++||||+++++.+-... ...+..++.+||.+... ..+++.+-.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S-~r~~~pfv~inC~~l~e-----~lleseLFG 285 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS-GRRDFPFVAINCGAIAE-----SLLEAELFG 285 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc-CcCCCCEEEeccccCCh-----hHHHHHhcC
Confidence 344444555666777788888899999999999999999999887643 23345788899987542 234444433
Q ss_pred hcCccc-cCC---------CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC
Q psy17974 463 RTKTLL-GAP---------LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP 532 (583)
Q Consensus 463 ~~~~~~-~p~---------~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~ 532 (583)
..+|.| |.. ......+|+||++.-+.+ .-.-|..+++.+.+....... ..-.|+.+|+|++.+
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------~Q~~Ll~~L~~~~~~r~g~~~-~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP------LQTRLLRVLEEREVVRVGGTE-PVPVDVRVVAATHCA 358 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHH------HHHHHHHHHhcCcEEecCCCc-eeeecceEEeccCCC
Confidence 233333 111 123457999999864433 234445566666554432221 223588999998765
Q ss_pred CC---CCCCCChhhhccce--EEEeCCCCH--HHHHHHHHHHhcccc
Q psy17974 533 GG---GRMPLTPRFVRHFG--LLSLPSPTE--DTLKVIFKVRTSPGK 572 (583)
Q Consensus 533 ~~---gr~~l~~Rllr~f~--vi~i~~p~~--~sl~~I~~~~l~~~l 572 (583)
-. ....+.+.|..+++ .|.+|+.-+ +++..+...++..+.
T Consensus 359 l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~ 405 (526)
T TIGR02329 359 LTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAA 405 (526)
T ss_pred HHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHH
Confidence 31 12245556666666 456666544 577777777776543
No 147
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.35 E-value=4e-06 Score=91.13 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=116.3
Q ss_pred CCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh
Q psy17974 380 MPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK 459 (583)
Q Consensus 380 ~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~ 459 (583)
-.|.+++=..+...+....++.......+||+.|++||||..+++++-+.- +..+-.++.+||.|-- + .++|+.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S-~R~~~PFIaiNCaAiP--e---~LlESE 315 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLS-PRANGPFIAINCAAIP--E---TLLESE 315 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcC-cccCCCeEEEecccCC--H---HHHHHH
Confidence 456777777888889999999999999999999999999999999887654 3445678999998843 2 367888
Q ss_pred hhhhcCccc-cCC-CCC--------eEEEEecCCCC-CCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEe
Q psy17974 460 LDKRTKTLL-GAP-LGK--------RLAVFVDDVNM-PKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTA 528 (583)
Q Consensus 460 l~~~~~~~~-~p~-~gk--------~~vlfiDDln~-p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa 528 (583)
|-...+|.| |+. +|| ...+|+|||+- |..-+ --+||-+-| +.++..... -..-.|+++|||
T Consensus 316 LFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQ------aKLLRVLQE-kei~rvG~t-~~~~vDVRIIAA 387 (560)
T COG3829 316 LFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQ------AKLLRVLQE-KEIERVGGT-KPIPVDVRIIAA 387 (560)
T ss_pred HhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHH------HHHHHHHhh-ceEEecCCC-CceeeEEEEEec
Confidence 876666666 332 334 34679999984 32211 247887766 444433222 122469999999
Q ss_pred cCCCC-----CCCCCCChhhhccceEEEeCCCC----HHHHHHHHHHHhccc
Q psy17974 529 CAPPG-----GGRMPLTPRFVRHFGLLSLPSPT----EDTLKVIFKVRTSPG 571 (583)
Q Consensus 529 ~~p~~-----~gr~~l~~Rllr~f~vi~i~~p~----~~sl~~I~~~~l~~~ 571 (583)
+|.+- .|++. .-|-=|-+|+.+.-|. .+++...-..+++.+
T Consensus 388 TN~nL~~~i~~G~FR--eDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~ 437 (560)
T COG3829 388 TNRNLEKMIAEGTFR--EDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKF 437 (560)
T ss_pred cCcCHHHHHhcCcch--hhheeeeceeeecCCCcccCcchHHHHHHHHHHHH
Confidence 99751 34321 2222234666555552 345555555555543
No 148
>PRK09087 hypothetical protein; Validated
Probab=98.35 E-value=4.5e-06 Score=83.29 Aligned_cols=122 Identities=17% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
+.++.|+||+|||||++++.+.+.. . ...++.. .+..-+-..+. .-++.|||++.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~----~--~~~i~~~------~~~~~~~~~~~-------------~~~l~iDDi~~ 98 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS----D--ALLIHPN------EIGSDAANAAA-------------EGPVLIEDIDA 98 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc----C--CEEecHH------HcchHHHHhhh-------------cCeEEEECCCC
Confidence 4459999999999999999877643 1 1223221 11110101111 01678899987
Q ss_pred CCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeCCCCHHHHHH
Q psy17974 486 PKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLKV 562 (583)
Q Consensus 486 p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~~ 562 (583)
...++ ....+++..+.+.| ...+++|..+|.. -....+++.+|+ .++.+..|+.+++..
T Consensus 99 ~~~~~---~~lf~l~n~~~~~g--------------~~ilits~~~p~~-~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 99 GGFDE---TGLFHLINSVRQAG--------------TSLLMTSRLWPSS-WNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred CCCCH---HHHHHHHHHHHhCC--------------CeEEEECCCChHH-hccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 53221 12344444444432 1244555545432 123468898888 899999999999999
Q ss_pred HHHHHhcc
Q psy17974 563 IFKVRTSP 570 (583)
Q Consensus 563 I~~~~l~~ 570 (583)
|+....+.
T Consensus 161 iL~~~~~~ 168 (226)
T PRK09087 161 VIFKLFAD 168 (226)
T ss_pred HHHHHHHH
Confidence 99988865
No 149
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=9.1e-06 Score=90.20 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=92.5
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..|+ ..|++||+|+|||++++.+++.+...+ ...+..++-+.....+++++.
T Consensus 26 L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRel 105 (535)
T PRK08451 26 LSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIREL 105 (535)
T ss_pred HHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHH
Confidence 344445553 248999999999999999988763111 122333332222234556555
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. ..+.|..+++-|++|||.++-..+ ..+.|+..+|.- ...+.||.+++.+.
T Consensus 106 ie~-------~~~~P~~~~~KVvIIDEad~Lt~~------A~NALLK~LEEp------------p~~t~FIL~ttd~~-- 158 (535)
T PRK08451 106 IEQ-------TKYKPSMARFKIFIIDEVHMLTKE------AFNALLKTLEEP------------PSYVKFILATTDPL-- 158 (535)
T ss_pred HHH-------HhhCcccCCeEEEEEECcccCCHH------HHHHHHHHHhhc------------CCceEEEEEECChh--
Confidence 532 124455566778999999887654 345556666631 12456776665543
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.+..++.+++......++.
T Consensus 159 --kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~ 190 (535)
T PRK08451 159 --KLPATILSRTQHFRFKQIPQNSIISHLKTILE 190 (535)
T ss_pred --hCchHHHhhceeEEcCCCCHHHHHHHHHHHHH
Confidence 68888999999999999999998887777665
No 150
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.34 E-value=3.5e-06 Score=75.03 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=29.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
+.+++|+||||||||++++.++..+. .....++.++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~~~~~~ 41 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG-PPGGGVIYIDGEDI 41 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC-CCCCCEEEECCEEc
Confidence 57899999999999999999999874 22223555555443
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=5.1e-06 Score=93.49 Aligned_cols=134 Identities=16% Similarity=0.224 Sum_probs=88.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHHHHhhhhhhcCc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEILEGKLDKRTKT 466 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~ 466 (583)
+..|++||+|||||++++.+++.+.-.. ...++.++-++....+.+.++++. +
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~-v------ 111 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDK-V------ 111 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHH-H------
Confidence 4578999999999999999988762111 123334433333344445444321 1
Q ss_pred cccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 467 LLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 467 ~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
.+.|..+++-|++|||+++-..+. ...+|+ .++.- ...+.||.+++.+. .+++-+.+|
T Consensus 112 ~~~p~~~~~kViIIDE~~~Lt~~a-----~naLLK-tLEep------------p~~~ifIlatt~~~----ki~~tI~SR 169 (559)
T PRK05563 112 KYAPSEAKYKVYIIDEVHMLSTGA-----FNALLK-TLEEP------------PAHVIFILATTEPH----KIPATILSR 169 (559)
T ss_pred hhCcccCCeEEEEEECcccCCHHH-----HHHHHH-HhcCC------------CCCeEEEEEeCChh----hCcHHHHhH
Confidence 245667788899999999875432 234444 33311 23466776665543 688889999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 547 FGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 547 f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+..+.+..|+.+++......+++
T Consensus 170 c~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 170 CQRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred heEEecCCCCHHHHHHHHHHHHH
Confidence 99999999999999988887765
No 152
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.33 E-value=2.6e-06 Score=91.79 Aligned_cols=153 Identities=17% Similarity=0.267 Sum_probs=82.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChH----HHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSA----RTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~----~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
+.++||+||||||||++++.++..+ +.....++.+..+.+. +....+...+.. ..+.+ ....+.|+|+|
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l----~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~-~~~~l--~~a~~gIV~lD 188 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL----NVPFAIADATTLTEAGYVGEDVENILLKLLQA-ADYDV--EKAQKGIIYID 188 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc----CCCeEEechhhccccccccccHHHHHHHHHHh-CcccH--HhcccceEEec
Confidence 3589999999999999999999876 2234444444433221 122222222221 11111 12345599999
Q ss_pred CCCCCCc---------ccCCCCChHHHHHHHHHhCCeeec--CCCeeEeecCeEEEEecCCC------------------
Q psy17974 482 DVNMPKL---------ETYGAQPPIELLRQFLDFGGLYDR--DKMFWKTLQDVVLCTACAPP------------------ 532 (583)
Q Consensus 482 Dln~p~~---------d~yg~q~~lElLRq~ld~~g~yd~--~~~~~~~i~~i~~iaa~~p~------------------ 532 (583)
|++-... |..|. .+...|-|++| |..-+. .........++.+|.|.|.-
T Consensus 189 EIdkl~~~~~~~s~~~dvsg~-~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~ 266 (413)
T TIGR00382 189 EIDKISRKSENPSITRDVSGE-GVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRT 266 (413)
T ss_pred ccchhchhhccccccccccch-hHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHh
Confidence 9994433 11221 23444446666 544331 11111222333333333330
Q ss_pred -----CCC-----------------------CCCCChhhhccce-EEEeCCCCHHHHHHHHHHH
Q psy17974 533 -----GGG-----------------------RMPLTPRFVRHFG-LLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 533 -----~~g-----------------------r~~l~~Rllr~f~-vi~i~~p~~~sl~~I~~~~ 567 (583)
|-+ +.-+.|.|+.|+. ++.+.+.+.++|..|...-
T Consensus 267 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~ 330 (413)
T TIGR00382 267 GKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKP 330 (413)
T ss_pred hhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHH
Confidence 000 0115577888885 6788899999999998763
No 153
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.33 E-value=5.3e-06 Score=87.42 Aligned_cols=85 Identities=21% Similarity=0.376 Sum_probs=57.7
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCC-eeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE-EE
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGG-LYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL-LS 551 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g-~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v-i~ 551 (583)
.+.++|+||+|..... ....|-+.++.|. -+.+.......-.++.++|++||.. | .+++.++.+|.+ +.
T Consensus 131 ~~GvL~lDEi~~L~~~------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-g--~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 131 NRGILYIDEVNLLEDH------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-G--ELRPQLLDRFGLHAE 201 (337)
T ss_pred cCCEEEecChHhCCHH------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-C--CCCHHHHhhcceEEE
Confidence 3468999999986544 3455566777663 2333333333345788899988763 2 599999999985 88
Q ss_pred eCCCCH-HHHHHHHHHH
Q psy17974 552 LPSPTE-DTLKVIFKVR 567 (583)
Q Consensus 552 i~~p~~-~sl~~I~~~~ 567 (583)
+++|+. ++...|....
T Consensus 202 l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 202 IRTVRDVELRVEIVERR 218 (337)
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 999976 5656666553
No 154
>KOG0989|consensus
Probab=98.33 E-value=2.9e-06 Score=86.04 Aligned_cols=144 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred HHHHHh-cCCceEEEccCCCcHHHHHHHHHHhhcccCCce--EEEEEeccCCChHHHHHHHHhh------hhhhcCcccc
Q psy17974 399 MEKLLL-VNHPVMFTGVTGVGKTVVARSILNKLLASNTWA--ALTINFSAQTSSARTQEILEGK------LDKRTKTLLG 469 (583)
Q Consensus 399 l~~~l~-~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~--~~~i~fS~~Tt~~~lq~~ie~~------l~~~~~~~~~ 469 (583)
.+.+.. ..-+.|++||||||||+++..+.+++..++-+. +...|-|-....+ ++..+ +....++.-+
T Consensus 49 ~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis----vvr~Kik~fakl~~~~~~~~~ 124 (346)
T KOG0989|consen 49 KNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS----VVREKIKNFAKLTVLLKRSDG 124 (346)
T ss_pred HHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc----chhhhhcCHHHHhhccccccC
Confidence 344444 345779999999999999999998874211111 1111222211111 11111 1111122333
Q ss_pred CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 470 APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
++....-|+.+||.+.-..| +...||..+|. | ...+.||--||-.+ .|++.+.+|+.-
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd------aq~aLrr~mE~---~---------s~~trFiLIcnyls----rii~pi~SRC~K 182 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD------AQAALRRTMED---F---------SRTTRFILICNYLS----RIIRPLVSRCQK 182 (346)
T ss_pred CCCCcceEEEEechhhhhHH------HHHHHHHHHhc---c---------ccceEEEEEcCChh----hCChHHHhhHHH
Confidence 33333357889999887666 34568888873 1 23577888888876 788899999999
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy17974 550 LSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l 568 (583)
+.++...++.+......|-
T Consensus 183 frFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred hcCCCcchHHHHHHHHHHH
Confidence 9999999877766666553
No 155
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.2e-05 Score=85.92 Aligned_cols=143 Identities=15% Similarity=0.263 Sum_probs=87.4
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhccc------C--CceEEEEEeccCCChHHHHHHHHhhhhhhcCcc
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLAS------N--TWAALTINFSAQTSSARTQEILEGKLDKRTKTL 467 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~------~--~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~ 467 (583)
+...++.| +++||+||+|+|||++++.+++.+... + .+..+.++-....+.+++.++++. +.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~-~~------ 101 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQ-VR------ 101 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHH-Hh------
Confidence 44555554 368999999999999999998876321 1 122222322222223455544432 11
Q ss_pred ccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc
Q psy17974 468 LGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF 547 (583)
Q Consensus 468 ~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f 547 (583)
..|..+++-|++|||++..... ..+.+...++.. ...+.+|.+++. +..+.+.+.+++
T Consensus 102 ~~p~~~~~kiviIDE~~~l~~~------~~~~ll~~le~~------------~~~~~~Il~~~~----~~kl~~~l~sr~ 159 (367)
T PRK14970 102 IPPQTGKYKIYIIDEVHMLSSA------AFNAFLKTLEEP------------PAHAIFILATTE----KHKIIPTILSRC 159 (367)
T ss_pred hccccCCcEEEEEeChhhcCHH------HHHHHHHHHhCC------------CCceEEEEEeCC----cccCCHHHHhcc
Confidence 1244455668999998754321 233344444421 123456666543 346888999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 548 GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 548 ~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.++.++.|+.+++..+...+...
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHH
Confidence 99999999999999888876653
No 156
>KOG0744|consensus
Probab=98.31 E-value=2e-06 Score=87.63 Aligned_cols=150 Identities=19% Similarity=0.270 Sum_probs=90.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhccc--CCc---eEEEEEeccCC------ChHHHHHHHHhhhhhhcCccccCC
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLAS--NTW---AALTINFSAQT------SSARTQEILEGKLDKRTKTLLGAP 471 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~--~~~---~~~~i~fS~~T------t~~~lq~~ie~~l~~~~~~~~~p~ 471 (583)
+..++=+||.||||||||++++++++++.-+ +.| ..+-||..+-- +...++++. ++++.-.. -
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF-~kI~ELv~-----d 247 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMF-QKIQELVE-----D 247 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHH-HHHHHHHh-----C
Confidence 4456778999999999999999999986311 111 23344432211 122222222 22211100 1
Q ss_pred CCCeEEEEecCCCCCCccc----CCCCC------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 472 LGKRLAVFVDDVNMPKLET----YGAQP------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~----yg~q~------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
.|.-..+.|||+-.-..-+ .|+.| +..+|-|+- ..+...|+.++||.|-.. .|+.
T Consensus 248 ~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD-----------rlK~~~NvliL~TSNl~~----siD~ 312 (423)
T KOG0744|consen 248 RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD-----------RLKRYPNVLILATSNLTD----SIDV 312 (423)
T ss_pred CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH-----------HhccCCCEEEEeccchHH----HHHH
Confidence 2223345699986432111 12222 234444442 234457899999988765 7888
Q ss_pred hhhccce-EEEeCCCCHHHHHHHHHHHhccccc
Q psy17974 542 RFVRHFG-LLSLPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 542 Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
+|..|-- +.++.+|+...+..||.+.+.....
T Consensus 313 AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 313 AFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred HhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 9988886 7999999999999999998875543
No 157
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=9e-06 Score=94.77 Aligned_cols=142 Identities=13% Similarity=0.196 Sum_probs=93.4
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhccc----------------------CCceEEEEEeccCCChHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLAS----------------------NTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~----------------------~~~~~~~i~fS~~Tt~~~lq 453 (583)
|..++..+ +.+||+||+|||||++++.+++.+.-. ....++.++-+.....+++.
T Consensus 27 L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR 106 (824)
T PRK07764 27 LSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDAR 106 (824)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHH
Confidence 44445543 347999999999999999998877200 12334444433333445555
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++++ ++ .|.|..+++-|++|||+++-..+ ....|+.++|.- ...+.||.+++.+.
T Consensus 107 ~l~~-~~------~~~p~~~~~KV~IIDEad~lt~~------a~NaLLK~LEEp------------P~~~~fIl~tt~~~ 161 (824)
T PRK07764 107 ELRE-RA------FFAPAESRYKIFIIDEAHMVTPQ------GFNALLKIVEEP------------PEHLKFIFATTEPD 161 (824)
T ss_pred HHHH-HH------HhchhcCCceEEEEechhhcCHH------HHHHHHHHHhCC------------CCCeEEEEEeCChh
Confidence 4322 11 24455567778999999997654 344555566531 23566777665543
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.|.+-+.+++.++.+..++.+++......+++
T Consensus 162 ----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~ 193 (824)
T PRK07764 162 ----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICA 193 (824)
T ss_pred ----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHH
Confidence 47788999999999999999999888877664
No 158
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.30 E-value=9.1e-06 Score=89.68 Aligned_cols=175 Identities=15% Similarity=0.178 Sum_probs=109.9
Q ss_pred cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~ 463 (583)
+++-.+....+....+..+...+.||++.|++|||||++++.+.... .......+.++|+... . ..+++.+...
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~i~i~c~~~~-~----~~~~~~lfg~ 212 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS-PRAKAPFIALNMAAIP-K----DLIESELFGH 212 (469)
T ss_pred cceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC-CCCCCCeEeeeCCCCC-H----HHHHHHhcCC
Confidence 34555666666777778888899999999999999999998877654 2344567889987752 2 2334444333
Q ss_pred cCcccc-C--------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 464 TKTLLG-A--------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 464 ~~~~~~-p--------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
.+|.|. + .......+|+||++.-..+ ..+.|.++++.+.+......... -.|+.+|+|++.+-.
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~------~q~~L~~~l~~~~~~~~~~~~~~-~~~~rii~~~~~~l~ 285 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD------VQTRLLRVLADGQFYRVGGYAPV-KVDVRIIAATHQNLE 285 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH------HHHHHHHHHhcCcEEeCCCCCeE-EeeEEEEEeCCCCHH
Confidence 333331 1 0112346899999654333 33556667777766553332222 258999999876521
Q ss_pred ---CCCCCChhhhccceEEEeCCCC----HHHHHHHHHHHhccc
Q psy17974 535 ---GRMPLTPRFVRHFGLLSLPSPT----EDTLKVIFKVRTSPG 571 (583)
Q Consensus 535 ---gr~~l~~Rllr~f~vi~i~~p~----~~sl~~I~~~~l~~~ 571 (583)
....+.+.|..+++++.+.-|. .+++..+...++..+
T Consensus 286 ~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~ 329 (469)
T PRK10923 286 QRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVA 329 (469)
T ss_pred HHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHH
Confidence 1235678888888755554443 366777777777654
No 159
>KOG0651|consensus
Probab=98.30 E-value=2.7e-06 Score=86.23 Aligned_cols=142 Identities=20% Similarity=0.269 Sum_probs=85.1
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEE
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlf 479 (583)
-++..+.++|.||||+|||.+++.++.++ +..++.+.-|+-.+. ..--++|...... +..-.+||+|
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~m----g~nfl~v~ss~lv~kyiGEsaRlIRemf~y-------A~~~~pciif 230 (388)
T KOG0651|consen 162 GIKPPKGLLLYGPPGTGKTLLARAVAATM----GVNFLKVVSSALVDKYIGESARLIRDMFRY-------AREVIPCIIF 230 (388)
T ss_pred CCCCCceeEEeCCCCCchhHHHHHHHHhc----CCceEEeeHhhhhhhhcccHHHHHHHHHHH-------HhhhCceEEe
Confidence 35556789999999999999999999987 233433332221110 0001122222111 2233469999
Q ss_pred ecCCCCCCccc--CCCCChHHHHHHHHHhC-CeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce---EEEeC
Q psy17974 480 VDDVNMPKLET--YGAQPPIELLRQFLDFG-GLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG---LLSLP 553 (583)
Q Consensus 480 iDDln~p~~d~--yg~q~~lElLRq~ld~~-g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~---vi~i~ 553 (583)
+|||+.-.-.. -||..--|.-|.+++-- +|+. +..+..+.+|+|.|.|. .+.|.|+|-=+ -+++|
T Consensus 231 mdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdg-----fd~l~rVk~ImatNrpd----tLdpaLlRpGRldrk~~iP 301 (388)
T KOG0651|consen 231 MDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDG-----FDTLHRVKTIMATNRPD----TLDPALLRPGRLDRKVEIP 301 (388)
T ss_pred ehhhhhhccEEeccccchhHHHHHHHHHHHHhhcc-----chhcccccEEEecCCcc----ccchhhcCCccccceeccC
Confidence 99999754222 23433344444444321 3332 33467889999999887 78888887432 48898
Q ss_pred CCCHHHHHHH
Q psy17974 554 SPTEDTLKVI 563 (583)
Q Consensus 554 ~p~~~sl~~I 563 (583)
-|++.+-..|
T Consensus 302 lpne~~r~~I 311 (388)
T KOG0651|consen 302 LPNEQARLGI 311 (388)
T ss_pred Ccchhhceee
Confidence 8887765443
No 160
>KOG2004|consensus
Probab=98.30 E-value=2.8e-06 Score=94.19 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=96.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc-cCCCC-----------
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL-GAPLG----------- 473 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~-~p~~g----------- 473 (583)
|+-+.++||||+|||++++.+++.+. . .+.++.....|+.+.+.+ .+++| |+-+|
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ALn-R---kFfRfSvGG~tDvAeIkG---------HRRTYVGAMPGkiIq~LK~v~t 504 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIARALN-R---KFFRFSVGGMTDVAEIKG---------HRRTYVGAMPGKIIQCLKKVKT 504 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHHHhC-C---ceEEEeccccccHHhhcc---------cceeeeccCChHHHHHHHhhCC
Confidence 56778999999999999999999983 2 244555555565544321 22233 33222
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHH---hCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEE
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLD---FGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLL 550 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld---~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi 550 (583)
..-++.|||++--...--|. |.-.+| .++| +..|.|.-=.--..+..+.||||.|.-. .|++.|+-|.-+|
T Consensus 505 ~NPliLiDEvDKlG~g~qGD-PasALL-ElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id----tIP~pLlDRMEvI 578 (906)
T KOG2004|consen 505 ENPLILIDEVDKLGSGHQGD-PASALL-ELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID----TIPPPLLDRMEVI 578 (906)
T ss_pred CCceEEeehhhhhCCCCCCC-hHHHHH-HhcChhhccchhhhccccccchhheEEEEeccccc----cCChhhhhhhhee
Confidence 23467899998776433332 333333 2222 1223222111223467899999999865 7999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhc
Q psy17974 551 SLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~ 569 (583)
.++-...++-..|-..+|-
T Consensus 579 elsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 579 ELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eccCccHHHHHHHHHHhhh
Confidence 9999999999999888874
No 161
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=7.5e-06 Score=91.60 Aligned_cols=134 Identities=15% Similarity=0.221 Sum_probs=86.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHHHHhhhhhhcCc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEILEGKLDKRTKT 466 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~ 466 (583)
+.+|++||+|+|||++++.+++.+.-.. ...++.++-+.....+++..+++ .+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~-~~~----- 112 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIID-NIN----- 112 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHH-HHH-----
Confidence 4589999999999999999988762100 01122232222234444444432 222
Q ss_pred cccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 467 LLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 467 ~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
+.|..+++-|++|||+++-..+ ....|+..+|.. ...+.+|.+++.+ ..+.+.+.+|
T Consensus 113 -~~P~~~~~KVIIIDEad~Lt~~------A~NaLLKtLEEP------------p~~tvfIL~Tt~~----~KLl~TI~SR 169 (605)
T PRK05896 113 -YLPTTFKYKVYIIDEAHMLSTS------AWNALLKTLEEP------------PKHVVFIFATTEF----QKIPLTIISR 169 (605)
T ss_pred -hchhhCCcEEEEEechHhCCHH------HHHHHHHHHHhC------------CCcEEEEEECCCh----HhhhHHHHhh
Confidence 2344445567999999986543 234455555531 1246677666554 3688899999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 547 FGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 547 f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+.++.+..++.+++...+..++.
T Consensus 170 cq~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 170 CQRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred hhhcccCCCCHHHHHHHHHHHHH
Confidence 99999999999999988887765
No 162
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.1e-05 Score=86.08 Aligned_cols=166 Identities=22% Similarity=0.263 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHHHHHHHHhhhhh------h
Q psy17974 393 IRFGSIMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSARTQEILEGKLDK------R 463 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~------~ 463 (583)
.+....+...+.++. ++++.||||||||++++.+++++... ....++.|||-...++-++-..|-+++.+ .
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~ 106 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS 106 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc
Confidence 445555666676654 58999999999999999999887433 22337899998887776655444443321 0
Q ss_pred cCccc------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCC
Q psy17974 464 TKTLL------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRM 537 (583)
Q Consensus 464 ~~~~~------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~ 537 (583)
....| -+..++..|+.+||+|.-.... | +.|=+++...+-. -..+.+|+..|...- ..
T Consensus 107 ~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~-~-----~~LY~L~r~~~~~---------~~~v~vi~i~n~~~~-~~ 170 (366)
T COG1474 107 SLEILKRLYDNLSKKGKTVIVILDEVDALVDKD-G-----EVLYSLLRAPGEN---------KVKVSIIAVSNDDKF-LD 170 (366)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc-c-----hHHHHHHhhcccc---------ceeEEEEEEeccHHH-HH
Confidence 00111 1235678999999999754432 2 3333333222111 234667777665422 45
Q ss_pred CCChhhhccce--EEEeCCCCHHHHHHHHHHHhcccccC
Q psy17974 538 PLTPRFVRHFG--LLSLPSPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 538 ~l~~Rllr~f~--vi~i~~p~~~sl~~I~~~~l~~~l~~ 574 (583)
.+++|+.+++. -|.+++.+.++|..|...-.+..|..
T Consensus 171 ~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~ 209 (366)
T COG1474 171 YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSA 209 (366)
T ss_pred HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccC
Confidence 68899988775 47899999999999999988876654
No 163
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.28 E-value=8.1e-06 Score=91.01 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=107.7
Q ss_pred CccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh-------cccCCceEEEEEeccCCChHHHHH
Q psy17974 382 FFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL-------LASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 382 ~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l-------~~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+.+++=..+...+....+..+...+.||||.|++||||+++++.+-..+ ....+..++.+||++.+. .
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-----~ 292 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-----S 292 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-----h
Confidence 3344444555666777788888899999999999999999999886641 122345788899988543 3
Q ss_pred HHHhhhhhhcCccc-cCC---------CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeE
Q psy17974 455 ILEGKLDKRTKTLL-GAP---------LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVV 524 (583)
Q Consensus 455 ~ie~~l~~~~~~~~-~p~---------~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~ 524 (583)
.+++.+-...+|.| |.. ......+|+||+..-+.+ .-.-|..+++.+.+....... ..-.|++
T Consensus 293 lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~------~Q~kLl~~L~e~~~~r~G~~~-~~~~dvR 365 (538)
T PRK15424 293 LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP------LQTRLLRVLEEKEVTRVGGHQ-PVPVDVR 365 (538)
T ss_pred hHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHH------HHHHHHhhhhcCeEEecCCCc-eeccceE
Confidence 34444433223322 211 122457999999864433 233444556655554322211 1235889
Q ss_pred EEEecCCCCC---CCCCCChhhhccceEE--EeCCCCH--HHHHHHHHHHhccc
Q psy17974 525 LCTACAPPGG---GRMPLTPRFVRHFGLL--SLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 525 ~iaa~~p~~~---gr~~l~~Rllr~f~vi--~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
+|+|++.+-. ....+.+.|..+++++ .+|+..+ +++..+...++..+
T Consensus 366 iIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 366 VISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred EEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 9999876521 1223445666666654 4554433 56777777777654
No 164
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.27 E-value=1.5e-05 Score=92.28 Aligned_cols=175 Identities=20% Similarity=0.208 Sum_probs=105.3
Q ss_pred cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~ 463 (583)
+++-..+...+...-++.+...+.||||+|++|||||++++.+.... ...+..++.++|.+.. +.. +++.+-..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s-~r~~~~~v~i~c~~~~-~~~----~~~~lfg~ 450 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS-GRNNRRMVKMNCAAMP-AGL----LESDLFGH 450 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc-CCCCCCeEEEecccCC-hhH----hhhhhcCc
Confidence 33333444555556677788889999999999999999999887643 2335678889988753 222 23332222
Q ss_pred cCccc-cC--------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-
Q psy17974 464 TKTLL-GA--------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG- 533 (583)
Q Consensus 464 ~~~~~-~p--------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~- 533 (583)
.++.+ |. ......++||||+.....+ .-+-|..+++.+.+....... ..-.++++|+|++.+-
T Consensus 451 ~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~------~Q~~L~~~l~~~~~~~~g~~~-~~~~~~RiI~~t~~~l~ 523 (686)
T PRK15429 451 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLE------LQPKLLRVLQEQEFERLGSNK-IIQTDVRLIAATNRDLK 523 (686)
T ss_pred ccccccccccchhhHHHhcCCCeEEEechhhCCHH------HHHHHHHHHHhCCEEeCCCCC-cccceEEEEEeCCCCHH
Confidence 22211 11 0122458999999875544 345566677766654432221 1124789999988752
Q ss_pred --CCCCCCChhhhccceEEEeCCCC--H--HHHHHHHHHHhccc
Q psy17974 534 --GGRMPLTPRFVRHFGLLSLPSPT--E--DTLKVIFKVRTSPG 571 (583)
Q Consensus 534 --~gr~~l~~Rllr~f~vi~i~~p~--~--~sl~~I~~~~l~~~ 571 (583)
.....+.+.|..+++++.+.-|. + +++-.+...++..+
T Consensus 524 ~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~ 567 (686)
T PRK15429 524 KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKI 567 (686)
T ss_pred HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHH
Confidence 12335666677777665444443 2 56666676666554
No 165
>PRK06526 transposase; Provisional
Probab=98.25 E-value=4.4e-07 Score=92.02 Aligned_cols=131 Identities=24% Similarity=0.296 Sum_probs=72.9
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc---CCCCCeEE
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG---APLGKRLA 477 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~---p~~gk~~v 477 (583)
.++..+.+++|+||||||||+++.++..... ..++.+.++ +...+..-+.... ..+.+. ..-.+.-+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~------t~~~l~~~l~~~~---~~~~~~~~l~~l~~~dl 162 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFA------TAAQWVARLAAAH---HAGRLQAELVKLGRYPL 162 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhh------hHHHHHHHHHHHH---hcCcHHHHHHHhccCCE
Confidence 3567889999999999999999999877653 234444332 2222222221110 111110 01123457
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC------CCC----CCChhhhccc
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG------GRM----PLTPRFVRHF 547 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~------gr~----~l~~Rllr~f 547 (583)
++|||+.....+. ...++|-++++.. |.. -.+|.++|-|.+ |.. .+-.|+..|.
T Consensus 163 LIIDD~g~~~~~~----~~~~~L~~li~~r--~~~----------~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~ 226 (254)
T PRK06526 163 LIVDEVGYIPFEP----EAANLFFQLVSSR--YER----------ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHA 226 (254)
T ss_pred EEEcccccCCCCH----HHHHHHHHHHHHH--Hhc----------CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCc
Confidence 8899998765443 2335666666532 211 124445554421 111 1236888899
Q ss_pred eEEEeCCCCH
Q psy17974 548 GLLSLPSPTE 557 (583)
Q Consensus 548 ~vi~i~~p~~ 557 (583)
.+|.++..|-
T Consensus 227 ~~i~~~g~s~ 236 (254)
T PRK06526 227 EVISLKGDSY 236 (254)
T ss_pred eEEeecCCCc
Confidence 9999987654
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.1e-05 Score=91.29 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=94.1
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..+++.| +..||+||+|+|||++++.+++.+.-.+ ...++.++-+.....+++.++
T Consensus 28 L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l 107 (576)
T PRK14965 28 LQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIREL 107 (576)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHH
Confidence 44455554 3469999999999999999988763111 112333433334455566554
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++ .+. |.|..+++-|++|||+|+-..+ ....|.-.+|.- ...+.||.+++.+.
T Consensus 108 ~~-~~~------~~p~~~~~KVvIIdev~~Lt~~------a~naLLk~LEep------------p~~~~fIl~t~~~~-- 160 (576)
T PRK14965 108 RE-NVK------YLPSRSRYKIFIIDEVHMLSTN------AFNALLKTLEEP------------PPHVKFIFATTEPH-- 160 (576)
T ss_pred HH-HHH------hccccCCceEEEEEChhhCCHH------HHHHHHHHHHcC------------CCCeEEEEEeCChh--
Confidence 32 222 3455566678999999987654 234455555521 23567777776553
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|.+.+.+|+.++.+..++.+++......+++.
T Consensus 161 --kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~ 193 (576)
T PRK14965 161 --KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ 193 (576)
T ss_pred --hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999988877776653
No 167
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.22 E-value=6.4e-06 Score=93.22 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=91.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH--HhhhhhhcCccc--cCC-CCCeEEEEec
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL--EGKLDKRTKTLL--GAP-LGKRLAVFVD 481 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i--e~~l~~~~~~~~--~p~-~gk~~vlfiD 481 (583)
.+|||.|++|||||++++.+...+.. ...++.++++ .+.+.+-.-+ +..+.. ....+ |+- .....++|+|
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~--~~pfv~i~~~--~t~d~L~G~idl~~~~~~-g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPP--IMPFVELPLG--VTEDRLIGGIDVEESLAG-GQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCc--CCCeEecCcc--cchhhcccchhhhhhhhc-CcccCCCCCeeeCCCCcEecc
Confidence 38999999999999999999876531 1124445542 2333322221 111110 01111 111 1334589999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhCCe-eecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE-EEeCCC-CHH
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFGGL-YDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL-LSLPSP-TED 558 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v-i~i~~p-~~~ 558 (583)
|+|...++ ....|.+.++.|.. +.+.......-.++.+|||+||.. +...+++.++.+|.+ +.+.++ +.+
T Consensus 92 Ei~rl~~~------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 92 MANLLDDG------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred chhhCCHH------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHHhccCeeecCCCCCHH
Confidence 99987665 46777788887764 344444445557899999999874 122789999999985 455544 444
Q ss_pred HHHHHHHHHh
Q psy17974 559 TLKVIFKVRT 568 (583)
Q Consensus 559 sl~~I~~~~l 568 (583)
.-..|....+
T Consensus 165 er~eil~~~~ 174 (589)
T TIGR02031 165 LRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHH
Confidence 4455555554
No 168
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.1e-05 Score=87.03 Aligned_cols=144 Identities=16% Similarity=0.245 Sum_probs=88.6
Q ss_pred HHHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcc--cCC------------------ceEEEEEeccCCChHHHHH
Q psy17974 398 IMEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLA--SNT------------------WAALTINFSAQTSSARTQE 454 (583)
Q Consensus 398 ll~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~--~~~------------------~~~~~i~fS~~Tt~~~lq~ 454 (583)
.+..++..++ ..||+||+|+|||++++.+++.+.- ... ..+..++-++....+++..
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~ 106 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRA 106 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHH
Confidence 4455565553 3589999999999999998887631 100 0122232222233333333
Q ss_pred HHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 455 ILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 455 ~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
+ ...+ .+.|..+++-|++|||+++...+ ..+.|...++.. ...+.+|.+++.+.
T Consensus 107 I-~~~~------~~~P~~~~~KVvIIDEad~Lt~~------a~naLLk~LEep------------p~~~v~Il~tt~~~- 160 (486)
T PRK14953 107 L-RDAV------SYTPIKGKYKVYIIDEAHMLTKE------AFNALLKTLEEP------------PPRTIFILCTTEYD- 160 (486)
T ss_pred H-HHHH------HhCcccCCeeEEEEEChhhcCHH------HHHHHHHHHhcC------------CCCeEEEEEECCHH-
Confidence 2 2222 23466677889999999987543 233344444421 12345555554332
Q ss_pred CCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 535 GRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 535 gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+++.++.+..++.+++......+++.
T Consensus 161 ---kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~ 193 (486)
T PRK14953 161 ---KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE 193 (486)
T ss_pred ---HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH
Confidence 577889999999999999999999888877653
No 169
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.20 E-value=2.2e-05 Score=87.71 Aligned_cols=170 Identities=20% Similarity=0.205 Sum_probs=105.9
Q ss_pred CchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 389 TIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 389 T~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
.+...+....++.+...+.||||.|++||||+.+++.+..... ..+-.++.+||++... . .+++.+-...++.|
T Consensus 193 s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~-r~~~p~v~v~c~~~~~-~----~~e~~lfG~~~g~~ 266 (509)
T PRK05022 193 SPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP-RADKPLVYLNCAALPE-S----LAESELFGHVKGAF 266 (509)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-cCCCCeEEEEcccCCh-H----HHHHHhcCcccccc
Confidence 3445666677888888999999999999999999999877542 2345678899987643 2 23333322122222
Q ss_pred -cC--------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---CCC
Q psy17974 469 -GA--------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---GGR 536 (583)
Q Consensus 469 -~p--------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---~gr 536 (583)
|+ ......++|+||++.-..+ ...-|.++++.+.+....... ..-.|+.+|+|++.+- -..
T Consensus 267 ~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~------~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~RiI~~t~~~l~~~~~~ 339 (509)
T PRK05022 267 TGAISNRSGKFELADGGTLFLDEIGELPLA------LQAKLLRVLQYGEIQRVGSDR-SLRVDVRVIAATNRDLREEVRA 339 (509)
T ss_pred CCCcccCCcchhhcCCCEEEecChhhCCHH------HHHHHHHHHhcCCEeeCCCCc-ceecceEEEEecCCCHHHHHHc
Confidence 11 1123457899999876544 234455567766654432221 1125899999988652 123
Q ss_pred CCCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 537 MPLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 537 ~~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
..+.+.|..++++ |.+|+..+ +++..+...++..+
T Consensus 340 ~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~ 378 (509)
T PRK05022 340 GRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQN 378 (509)
T ss_pred CCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHH
Confidence 3567778777775 55555433 56777777666654
No 170
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.20 E-value=1.5e-05 Score=84.09 Aligned_cols=84 Identities=21% Similarity=0.354 Sum_probs=58.4
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhC-CeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEe
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG-GLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSL 552 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~-g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i 552 (583)
..++|+||+|...++ ....|-+.++.| .-+.+.......-.++.++|++||..+ .+++.++.+|. .+.+
T Consensus 145 ~GiL~lDEInrL~~~------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg---~l~~~LldRf~l~i~l 215 (350)
T CHL00081 145 RGILYVDEVNLLDDH------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEG---ELRPQLLDRFGMHAEI 215 (350)
T ss_pred CCEEEecChHhCCHH------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccC---CCCHHHHHHhCceeec
Confidence 568999999987655 234455566654 234433333344458889999988742 48999999998 4889
Q ss_pred CCCCH-HHHHHHHHHH
Q psy17974 553 PSPTE-DTLKVIFKVR 567 (583)
Q Consensus 553 ~~p~~-~sl~~I~~~~ 567 (583)
.+|+. +.-..|...-
T Consensus 216 ~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 216 RTVKDPELRVKIVEQR 231 (350)
T ss_pred CCCCChHHHHHHHHhh
Confidence 99984 7777777664
No 171
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.9e-05 Score=88.27 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=90.6
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC----------------------CceEEEEEeccCCChHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN----------------------TWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~----------------------~~~~~~i~fS~~Tt~~~lq 453 (583)
+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-...+..++++
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IR 107 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIR 107 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHH
Confidence 44444444 5789999999999999999988763110 0123334433345566666
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++++. +. +.|-.+++-|++|||.++-..+ ..+.|.-.+|.- ..++.||.+++.+.
T Consensus 108 eii~~-a~------~~p~~~~~KViIIDEad~Lt~~------a~naLLK~LEeP------------p~~tvfIL~t~~~~ 162 (620)
T PRK14948 108 ELIER-AQ------FAPVQARWKVYVIDECHMLSTA------AFNALLKTLEEP------------PPRVVFVLATTDPQ 162 (620)
T ss_pred HHHHH-Hh------hChhcCCceEEEEECccccCHH------HHHHHHHHHhcC------------CcCeEEEEEeCChh
Confidence 66532 21 2333455668899999876543 234444455521 23566777766443
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.+..++.+++......+..
T Consensus 163 ----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 163 ----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred ----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHH
Confidence 47788999999999999999988776665544
No 172
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.18 E-value=2.7e-05 Score=89.40 Aligned_cols=182 Identities=16% Similarity=0.149 Sum_probs=108.1
Q ss_pred CCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhh
Q psy17974 381 PFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKL 460 (583)
Q Consensus 381 ~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l 460 (583)
.+.+++-..+...+....+..+...+.||||.|++||||+++++.+..... ...-.++.+||++... +.+..-+-+..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~-r~~~pfv~vnc~~~~~-~~~~~elfg~~ 400 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESE-RAAGPYIAVNCQLYPD-EALAEEFLGSD 400 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCC-ccCCCeEEEECCCCCh-HHHHHHhcCCC
Confidence 355555555666777788888889999999999999999999999876542 2334678899887543 22222111111
Q ss_pred -hhhcCccccC-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---C
Q psy17974 461 -DKRTKTLLGA-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---G 535 (583)
Q Consensus 461 -~~~~~~~~~p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---g 535 (583)
....++.-|. ......++|+||++....+ .-+.|.++++.+.+....... ..-.|+.+|+|++.+-. .
T Consensus 401 ~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~------~Q~~Ll~~l~~~~~~~~~~~~-~~~~~~riI~~t~~~l~~~~~ 473 (638)
T PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPE------LQSALLQVLKTGVITRLDSRR-LIPVDVRVIATTTADLAMLVE 473 (638)
T ss_pred CcCccCCCCCceeECCCCEEEEcChhhCCHH------HHHHHHHHHhcCcEEeCCCCc-eEEeeEEEEEeccCCHHHHHh
Confidence 0011111111 0123457999999865544 234555566656544322211 11247899999886421 1
Q ss_pred CCCCChhhhccceEEE--eCCCCH--HHHHHHHHHHhccc
Q psy17974 536 RMPLTPRFVRHFGLLS--LPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~--i~~p~~--~sl~~I~~~~l~~~ 571 (583)
...+.+.|.-+++++. +|+.-+ +++..+...++..+
T Consensus 474 ~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~ 513 (638)
T PRK11388 474 QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSL 513 (638)
T ss_pred cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHH
Confidence 2345566766776544 555433 57777777777654
No 173
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.18 E-value=7.3e-06 Score=94.83 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCc----eEEEEEeccCCChHHHH-HHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTW----AALTINFSAQTSSARTQ-EILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~----~~~~i~fS~~Tt~~~lq-~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
..||||+|+||||||.+++.+.+.. ....| ....+.+++ .... +...+... ...|.+. .....+++|
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~ls-pR~~ytsG~~~s~vgLTa----~~~~~d~~tG~~~-le~GaLv--lAdgGtL~I 563 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLS-PRSIYTSGKSSSSVGLTA----SIKFNESDNGRAM-IQPGAVV--LANGGVCCI 563 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhC-CccccCCCCCCccccccc----hhhhcccccCccc-ccCCcEE--EcCCCeEEe
Confidence 3499999999999999999876632 12111 111121211 1000 00000000 0111111 122348999
Q ss_pred cCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCCC---------CCCCCChhhhccceE-
Q psy17974 481 DDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPGG---------GRMPLTPRFVRHFGL- 549 (583)
Q Consensus 481 DDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~~---------gr~~l~~Rllr~f~v- 549 (583)
||++-...+ .-..|-+.++.+..- .+......--.++.+|||+||.+| +...+++.++.||-+
T Consensus 564 DEidkms~~------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 564 DELDKCHNE------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred cchhhCCHH------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 999954332 123334455544321 211222222358999999999643 245789999999965
Q ss_pred -EEeCCCCHHHHHHHHHHHhccc
Q psy17974 550 -LSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 550 -i~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+-++.|+.+.=..|-..+++.|
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~~~ 660 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAKDF 660 (915)
T ss_pred EEecCCCChHHHHHHHHHHHHhh
Confidence 4678888776666655555543
No 174
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.4e-05 Score=87.92 Aligned_cols=142 Identities=18% Similarity=0.213 Sum_probs=88.6
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+...+..| +..||+||+|+|||++++.+++.+.-.. ...++.++-...+..+++..+
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l 107 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQI 107 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHH
Confidence 44444444 3479999999999999999988763110 122222322222444454443
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. + .+.|..+++-|++|||+++-..+ ..+.|...++. + ...+.||.+++.+.
T Consensus 108 ~e~-~------~~~p~~~~~KVvIIDEa~~Ls~~------a~naLLK~LEe-----p-------p~~~vfI~~tte~~-- 160 (563)
T PRK06647 108 KEE-I------MFPPASSRYRVYIIDEVHMLSNS------AFNALLKTIEE-----P-------PPYIVFIFATTEVH-- 160 (563)
T ss_pred HHH-H------HhchhcCCCEEEEEEChhhcCHH------HHHHHHHhhcc-----C-------CCCEEEEEecCChH--
Confidence 221 1 12344566678999999986543 23333333442 1 23567777665442
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.+..++.+++......+..
T Consensus 161 --kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 161 --KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred --HhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence 58899999999999999999999888777654
No 175
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.17 E-value=6.7e-06 Score=87.67 Aligned_cols=160 Identities=24% Similarity=0.235 Sum_probs=97.7
Q ss_pred cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
+++=......+...-++.+.-.+.|||+.|++||||+.+++.+-. .... .+-..+.+||++.+..- | +..+-.
T Consensus 79 ~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~-~s~r~~~~PFI~~NCa~~~en~--~---~~eLFG 152 (403)
T COG1221 79 DLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHA-LSARRAEAPFIAFNCAAYSENL--Q---EAELFG 152 (403)
T ss_pred hhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHH-hhhcccCCCEEEEEHHHhCcCH--H---HHHHhc
Confidence 334344445666666677777899999999999999999987753 2122 24568889998866532 2 222322
Q ss_pred hcCcc-ccCCCCC--------eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 463 RTKTL-LGAPLGK--------RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 463 ~~~~~-~~p~~gk--------~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
..+|. .|+..++ ..++|+|||+-.++. ..|-|=+++|.|-|..... .-....|+.+|+|++-..
T Consensus 153 ~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~------~Q~kLl~~le~g~~~rvG~-~~~~~~dVRli~AT~~~l 225 (403)
T COG1221 153 HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE------GQEKLLRVLEEGEYRRVGG-SQPRPVDVRLICATTEDL 225 (403)
T ss_pred cccceeecccCCcCchheecCCCEEehhhhhhCCHh------HHHHHHHHHHcCceEecCC-CCCcCCCceeeeccccCH
Confidence 22332 2433222 247899999976554 4577778889887765433 223457999999987542
Q ss_pred CCCCCCC-hhhhc--cceEEEeCCCCH
Q psy17974 534 GGRMPLT-PRFVR--HFGLLSLPSPTE 557 (583)
Q Consensus 534 ~gr~~l~-~Rllr--~f~vi~i~~p~~ 557 (583)
+ +.-+. .-|.| .+.+|.+|+..+
T Consensus 226 ~-~~~~~g~dl~~rl~~~~I~LPpLrE 251 (403)
T COG1221 226 E-EAVLAGADLTRRLNILTITLPPLRE 251 (403)
T ss_pred H-HHHHhhcchhhhhcCceecCCChhh
Confidence 1 11111 24444 334677766544
No 176
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.9e-05 Score=83.58 Aligned_cols=130 Identities=18% Similarity=0.282 Sum_probs=79.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccC------------------Cc-eEEEEEec-cCCChHHHHHHHHhhhhhhcCc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASN------------------TW-AALTINFS-AQTSSARTQEILEGKLDKRTKT 466 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~------------------~~-~~~~i~fS-~~Tt~~~lq~~ie~~l~~~~~~ 466 (583)
+.+|+.||+|+|||++++.+++.+.-.. .+ .+..+... .....+++.++++ .+.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~-~~~----- 110 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVT-IAA----- 110 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHH-HHH-----
Confidence 4589999999999999999987652110 00 11122111 1123344443331 111
Q ss_pred cccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 467 LLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 467 ~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
+.|..+++-|++|||++.-..+ ....+|+. +|.. .. ..+.+++|.+ +. .+.+-+.+|
T Consensus 111 -~~p~~~~~kViiIDead~m~~~-----aanaLLk~-LEep-----~~------~~~fIL~a~~-~~----~llpTIrSR 167 (394)
T PRK07940 111 -RRPSTGRWRIVVIEDADRLTER-----AANALLKA-VEEP-----PP------RTVWLLCAPS-PE----DVLPTIRSR 167 (394)
T ss_pred -hCcccCCcEEEEEechhhcCHH-----HHHHHHHH-hhcC-----CC------CCeEEEEECC-hH----HChHHHHhh
Confidence 2355567779999999976544 23445554 3421 11 1234555555 33 688999999
Q ss_pred ceEEEeCCCCHHHHHHHHH
Q psy17974 547 FGLLSLPSPTEDTLKVIFK 565 (583)
Q Consensus 547 f~vi~i~~p~~~sl~~I~~ 565 (583)
+.++.++.|+.+++...+.
T Consensus 168 c~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 168 CRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred CeEEECCCCCHHHHHHHHH
Confidence 9999999999999887775
No 177
>KOG1969|consensus
Probab=98.17 E-value=2e-05 Score=87.77 Aligned_cols=144 Identities=17% Similarity=0.309 Sum_probs=97.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
+-+|||||||-|||+++.-+++. .+|.++-||-|-.-++..+.+-|++-+.- ..+.+ ..+++.++.||||+-.
T Consensus 327 KilLL~GppGlGKTTLAHViAkq----aGYsVvEINASDeRt~~~v~~kI~~avq~--~s~l~-adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQ----AGYSVVEINASDERTAPMVKEKIENAVQN--HSVLD-ADSRPVCLVIDEIDGA 399 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHh----cCceEEEecccccccHHHHHHHHHHHHhh--ccccc-cCCCcceEEEecccCC
Confidence 45799999999999999988874 48999999999999999888877776542 22222 3567788999999864
Q ss_pred CcccCCCCChHHHHHHHHHhCC--ee------e--cCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCC
Q psy17974 487 KLETYGAQPPIELLRQFLDFGG--LY------D--RDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSP 555 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g--~y------d--~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p 555 (583)
.+ ..+..|+.++.-.+ -+ + +++.+.+.+.+ =+||-||.-. ...-|=+|-|. ++++..|
T Consensus 400 ~~------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNdLY----aPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 400 PR------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICNDLY----APALRPLRPFAEIIAFVPP 468 (877)
T ss_pred cH------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecCcc----chhhhhcccceEEEEecCC
Confidence 42 24566666665211 11 1 12223333433 2567788643 23335577776 8999999
Q ss_pred CHHHHHHHHHHHh
Q psy17974 556 TEDTLKVIFKVRT 568 (583)
Q Consensus 556 ~~~sl~~I~~~~l 568 (583)
..+.|..=.+.|.
T Consensus 469 ~~s~Lv~RL~~IC 481 (877)
T KOG1969|consen 469 SQSRLVERLNEIC 481 (877)
T ss_pred ChhHHHHHHHHHH
Confidence 9999886655553
No 178
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=3.3e-05 Score=84.79 Aligned_cols=143 Identities=21% Similarity=0.279 Sum_probs=90.4
Q ss_pred HHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC---------------------CceEEEEEeccCCChHHHH
Q psy17974 398 IMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN---------------------TWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 398 ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~---------------------~~~~~~i~fS~~Tt~~~lq 453 (583)
.+...++.| +.+|++||+|+|||++++.+++.+.... ...++.++-+.....+++.
T Consensus 28 ~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir 107 (451)
T PRK06305 28 VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIR 107 (451)
T ss_pred HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHH
Confidence 345555554 3579999999999999999988763210 0122223212222334444
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
.+.+ .+ .+.|..+++-|++|||++.-..+ ..+.|..+++.. ...+.+|.+++.+
T Consensus 108 ~i~~-~l------~~~~~~~~~kvvIIdead~lt~~------~~n~LLk~lEep------------~~~~~~Il~t~~~- 161 (451)
T PRK06305 108 QINE-TV------LFTPSKSRYKIYIIDEVHMLTKE------AFNSLLKTLEEP------------PQHVKFFLATTEI- 161 (451)
T ss_pred HHHH-HH------HhhhhcCCCEEEEEecHHhhCHH------HHHHHHHHhhcC------------CCCceEEEEeCCh-
Confidence 3321 11 13445566678899998765433 345555666632 1245677666544
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
..+.+.+.+|+.++.+..++.+++......+++
T Consensus 162 ---~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 162 ---HKIPGTILSRCQKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred ---HhcchHHHHhceEEeCCCCCHHHHHHHHHHHHH
Confidence 368889999999999999999999988777655
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.1e-05 Score=91.36 Aligned_cols=181 Identities=15% Similarity=0.221 Sum_probs=92.3
Q ss_pred eeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHh---cCCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEE
Q psy17974 365 TPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLL---VNHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALT 440 (583)
Q Consensus 365 ~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~---~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~ 440 (583)
.+|.++..+. .+.++.+..........++..... .++-++|+||+|||||++++.++..+... .+|. ..
T Consensus 72 ~pW~eKyrP~------~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~-np 144 (637)
T TIGR00602 72 EPWVEKYKPE------TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS-NP 144 (637)
T ss_pred CchHHHhCCC------CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh-hh
Confidence 4787776432 234555655444444444443332 22349999999999999999888765210 0110 00
Q ss_pred EE-----------------eccC-CChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCCCCCCcccCCCCChHHHHH
Q psy17974 441 IN-----------------FSAQ-TSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDVNMPKLETYGAQPPIELLR 501 (583)
Q Consensus 441 i~-----------------fS~~-Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDln~p~~d~yg~q~~lElLR 501 (583)
++ |+.. ...+.+.+++... .. .....| ...+++.||+|||+...- ..+++..-++||
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a-~~-~~~~~g~~~~~~~~IILIDEiPn~~--~r~~~~lq~lLr 220 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRA-TN-KLQMLGDDLMTDKKIILVEDLPNQF--YRDTRALHEILR 220 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHH-Hh-hhcccccccCCceeEEEeecchhhc--hhhHHHHHHHHH
Confidence 10 1111 1223333333221 11 001111 124567799999994311 112332334555
Q ss_pred -HHHHhCCeeecCCCeeEeecCeEEEEecCC-CCCCCCC----------CChhhhccc--eEEEeCCCCHHHHHHHHHHH
Q psy17974 502 -QFLDFGGLYDRDKMFWKTLQDVVLCTACAP-PGGGRMP----------LTPRFVRHF--GLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 502 -q~ld~~g~yd~~~~~~~~i~~i~~iaa~~p-~~~gr~~----------l~~Rllr~f--~vi~i~~p~~~sl~~I~~~~ 567 (583)
.+.+.+ .+-+|++++. |.++.+. +.+.++.|. .+|.+++.+...+......+
T Consensus 221 ~~~~e~~--------------~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rI 286 (637)
T TIGR00602 221 WKYVSIG--------------RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRI 286 (637)
T ss_pred HHhhcCC--------------CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHH
Confidence 332211 2345555542 3322211 336777644 56999999999988888777
Q ss_pred hcc
Q psy17974 568 TSP 570 (583)
Q Consensus 568 l~~ 570 (583)
+..
T Consensus 287 l~~ 289 (637)
T TIGR00602 287 VTI 289 (637)
T ss_pred HHh
Confidence 764
No 180
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=2.6e-05 Score=88.84 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=88.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCC-ChHHHHHHHHhhh--------hh--hcCcc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQT-SSARTQEILEGKL--------DK--RTKTL 467 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~T-t~~~lq~~ie~~l--------~~--~~~~~ 467 (583)
...+++|+||||||||++++.+....... .+...+.++++... ....++..+-... .+ ...+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 34579999999999999999886543110 12235566654321 1122211110000 00 00111
Q ss_pred ccCC-----CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCC------eeecCC-CeeEee---------cCeEEE
Q psy17974 468 LGAP-----LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGG------LYDRDK-MFWKTL---------QDVVLC 526 (583)
Q Consensus 468 ~~p~-----~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g------~yd~~~-~~~~~i---------~~i~~i 526 (583)
..+. .....++|+||++.-..+ ..+.|..+++.+- .|+..+ ..|..+ .++.++
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPL------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLI 327 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHH------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEE
Confidence 1111 112348999998865443 2345556665542 333321 223221 246666
Q ss_pred EecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 527 TACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 527 aa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+|++... ..+++.+.+||..+.+++++.+++..|+...+..
T Consensus 328 ~aTt~~~---~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~ 368 (615)
T TIGR02903 328 GATTRDP---EEINPALRSRCAEVFFEPLTPEDIALIVLNAAEK 368 (615)
T ss_pred Eeccccc---cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6654321 2688999999999999999999999999998764
No 181
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.14 E-value=3.6e-05 Score=86.13 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=105.9
Q ss_pred CCCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh
Q psy17974 379 TMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG 458 (583)
Q Consensus 379 ~~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~ 458 (583)
...|.+++-..+...+....++.+...+.||||.|++||||+++++++-... ....-..+.+||++.. .+. +++
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s-~r~~~pfv~inca~~~-~~~----~e~ 273 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS-PRGKKPFLALNCASIP-DDV----VES 273 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC-CCCCCCeEEeccccCC-HHH----HHH
Confidence 3455565555555566777778888899999999999999999999875432 2233456788987754 222 233
Q ss_pred hhhhhcCccc-cCC--------CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 459 KLDKRTKTLL-GAP--------LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 459 ~l~~~~~~~~-~p~--------~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
.+-....+.| ++. .....++|+||++.-..+ .-.-|.++++.|.|...... -..-.|+.+|+|+
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~------~Q~~Ll~~l~~~~~~~~g~~-~~~~~~vRiI~st 346 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR------MQAKLLRFLNDGTFRRVGED-HEVHVDVRVICAT 346 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH------HHHHHHHHHhcCCcccCCCC-cceeeeeEEEEec
Confidence 3221111111 100 122457899999865443 22445556665555432221 1112478899987
Q ss_pred CCCC---CCCCCCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 530 APPG---GGRMPLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 530 ~p~~---~gr~~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
+.+- .....+.+.|..++++ |.+|+..+ +++..+...++..+
T Consensus 347 ~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~ 395 (520)
T PRK10820 347 QKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARF 395 (520)
T ss_pred CCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHH
Confidence 7642 1222455667777664 55665544 45666666666544
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=2.4e-06 Score=76.81 Aligned_cols=109 Identities=16% Similarity=0.213 Sum_probs=68.5
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhccc----CCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc------c---c-
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLAS----NTWAALTINFSAQTSSARTQEILEGKLDKRTKTL------L---G- 469 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~----~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~------~---~- 469 (583)
+.+..++++||+|+|||++++.+++.+... ....++.++++...++..+...+-..+....... + .
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 356789999999999999999999876311 1456778888888887777766666654432220 0 0
Q ss_pred -CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCC
Q psy17974 470 -APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAP 531 (583)
Q Consensus 470 -p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p 531 (583)
-...+..+++|||++... ....++.||.+.+ -.++.+|.+.+|
T Consensus 82 ~l~~~~~~~lviDe~~~l~-----~~~~l~~l~~l~~--------------~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLF-----SDEFLEFLRSLLN--------------ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHH-----THHHHHHHHHHTC--------------SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcC-----CHHHHHHHHHHHh--------------CCCCeEEEEECh
Confidence 012233689999998752 1457888888776 125667766655
No 183
>PRK09183 transposase/IS protein; Provisional
Probab=98.13 E-value=1.4e-06 Score=88.74 Aligned_cols=131 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh-hhhhhcCccccCCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG-KLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~-~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
+..+.+++|+||+|||||+++.++..... ..++.+.+++. ..+..-+.. .-.......+.....+.-+++||
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~~------~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA------ADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEeH------HHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEc
Confidence 66789999999999999999999866542 23455555432 222211111 11100001111111233488999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-CC------CCC----CCChhhhccceEE
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GG------GRM----PLTPRFVRHFGLL 550 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-~~------gr~----~l~~Rllr~f~vi 550 (583)
|+.....+..+.+...+++..-.+.+ .+|.|+|.+ +. |.. .+-.|+..|+.+|
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r~~~~----------------s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~i 235 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKRYEKG----------------SMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVV 235 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHHHhcC----------------cEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEEE
Confidence 99876555433322333333322211 133444443 32 111 2445777888888
Q ss_pred EeCCCC
Q psy17974 551 SLPSPT 556 (583)
Q Consensus 551 ~i~~p~ 556 (583)
.+...|
T Consensus 236 ~~~g~s 241 (259)
T PRK09183 236 QIKGES 241 (259)
T ss_pred eecCCC
Confidence 887644
No 184
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.12 E-value=2.8e-05 Score=88.90 Aligned_cols=148 Identities=21% Similarity=0.339 Sum_probs=88.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhccc-------------------------------CCceEEEEEeccCCChHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLAS-------------------------------NTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~-------------------------------~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
.+|||.||+|||||++++.+..-++.. ....++.++.+. +.+.+...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~--t~~~l~G~ 103 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGA--TEDRVVGS 103 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCC--cHHHcCCc
Confidence 479999999999999999987765210 011223333332 22222211
Q ss_pred H--HhhhhhhcCccc--cC-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe-eecCCCeeEeecCeEEEEec
Q psy17974 456 L--EGKLDKRTKTLL--GA-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL-YDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 456 i--e~~l~~~~~~~~--~p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~~~~~~~i~~i~~iaa~ 529 (583)
+ +..+.. .+..+ |+ ......++||||+|....+ ..+.|.+.++.|.. +.+.......-.++.+|||+
T Consensus 104 ~d~~~~l~~-g~~~~~~G~L~~A~~GiL~lDEi~~l~~~------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~ 176 (633)
T TIGR02442 104 LDIERALRE-GEKAFQPGLLAEAHRGILYIDEVNLLDDH------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM 176 (633)
T ss_pred ccHHHHhhc-CCeeecCcceeecCCCeEEeChhhhCCHH------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec
Confidence 1 111110 01111 11 0223459999999987655 46778888887753 33444444445789999999
Q ss_pred CCCCCCCCCCChhhhccceE-EEeCCCCH-HHHHHHHHH
Q psy17974 530 APPGGGRMPLTPRFVRHFGL-LSLPSPTE-DTLKVIFKV 566 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f~v-i~i~~p~~-~sl~~I~~~ 566 (583)
||.. | .+++.|+.+|.+ +.++++.. ++...|...
T Consensus 177 np~e-g--~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 177 NPEE-G--DLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred CCCC-C--CCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 9753 2 588999999974 77777753 444444443
No 185
>KOG0730|consensus
Probab=98.10 E-value=1.5e-05 Score=88.19 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=89.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCC-eEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGK-RLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk-~~vlfiDD 482 (583)
....+|++||||||||.++++++++. +.....+|.+. -+++.. +.-++.-+..|. ....+ +.++||||
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~----~a~~~~i~~pe-----li~k~~-gEte~~LR~~f~~a~k~~~psii~IdE 286 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEY----GAFLFLINGPE-----LISKFP-GETESNLRKAFAEALKFQVPSIIFIDE 286 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHh----CceeEecccHH-----HHHhcc-cchHHHHHHHHHHHhccCCCeeEeHHh
Confidence 35788999999999999999999864 23344454432 111110 001111111111 11233 78999999
Q ss_pred CCCCCcccCCCCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc-cce-EEEeCCCC
Q psy17974 483 VNMPKLETYGAQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR-HFG-LLSLPSPT 556 (583)
Q Consensus 483 ln~p~~d~yg~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr-~f~-vi~i~~p~ 556 (583)
|+.-.+.+-+++. +..-|+.|+|.-+ ....+.+++|.|.|. .|++.+.| +|- -+.|.-|+
T Consensus 287 ld~l~p~r~~~~~~e~Rv~sqlltL~dg~~----------~~~~vivl~atnrp~----sld~alRRgRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 287 LDALCPKREGADDVESRVVSQLLTLLDGLK----------PDAKVIVLAATNRPD----SLDPALRRGRFDREVEIGIPG 352 (693)
T ss_pred HhhhCCcccccchHHHHHHHHHHHHHhhCc----------CcCcEEEEEecCCcc----ccChhhhcCCCcceeeecCCC
Confidence 9986655545554 2334555555222 234577889988875 78999987 774 68888999
Q ss_pred HHHHHHHHHHHhccc
Q psy17974 557 EDTLKVIFKVRTSPG 571 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~ 571 (583)
...-..|...+.+.+
T Consensus 353 ~~~RldIl~~l~k~~ 367 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKM 367 (693)
T ss_pred chhHHHHHHHHHHhc
Confidence 888777777776544
No 186
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.2e-05 Score=85.71 Aligned_cols=143 Identities=19% Similarity=0.214 Sum_probs=91.1
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC-------------------------CceEEEEEeccCCChH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN-------------------------TWAALTINFSAQTSSA 450 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~-------------------------~~~~~~i~fS~~Tt~~ 450 (583)
+..++..| +.+||+||+|+|||++++.+++.+.-.. ...++.++-++.+..+
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd 115 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVD 115 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHH
Confidence 33444444 3699999999999999999988762110 0112233333445566
Q ss_pred HHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC
Q psy17974 451 RTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA 530 (583)
Q Consensus 451 ~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~ 530 (583)
++.++++. +. +.|-.+++-|++|||.++-..+ ..+.|...++.- ...+.||.+++
T Consensus 116 ~IReIie~-~~------~~P~~a~~KVvIIDEad~Ls~~------a~naLLKtLEeP------------p~~~~fIl~tt 170 (598)
T PRK09111 116 DIREIIES-VR------YRPVSARYKVYIIDEVHMLSTA------AFNALLKTLEEP------------PPHVKFIFATT 170 (598)
T ss_pred HHHHHHHH-HH------hchhcCCcEEEEEEChHhCCHH------HHHHHHHHHHhC------------CCCeEEEEEeC
Confidence 66665532 22 2344455668899999886543 233344444421 23466666665
Q ss_pred CCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 531 PPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 531 p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+. .+.+.+.+++.++.+..++.+++......+++.
T Consensus 171 e~~----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 171 EIR----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred Chh----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 433 477779999999999999999999988887753
No 187
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=5.4e-05 Score=85.90 Aligned_cols=142 Identities=16% Similarity=0.269 Sum_probs=88.0
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC---------------------CceEEEEEeccCCChHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN---------------------TWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~---------------------~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+..++..+ +.+||+||+|+|||++++.+++.+.-.. ...++.++-+.....++++.
T Consensus 28 L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ 107 (585)
T PRK14950 28 LRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE 107 (585)
T ss_pred HHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH
Confidence 34444443 3469999999999999999988762100 01233344333455566655
Q ss_pred HHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 455 ILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 455 ~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
+++ .+. +.|..+++-|++|||+++-..+ ..+.|...++.. ..++.||.+++..
T Consensus 108 ii~-~~~------~~p~~~~~kVvIIDEa~~L~~~------a~naLLk~LEep------------p~~tv~Il~t~~~-- 160 (585)
T PRK14950 108 IIE-RVQ------FRPALARYKVYIIDEVHMLSTA------AFNALLKTLEEP------------PPHAIFILATTEV-- 160 (585)
T ss_pred HHH-HHh------hCcccCCeEEEEEeChHhCCHH------HHHHHHHHHhcC------------CCCeEEEEEeCCh--
Confidence 543 222 2344456668999999875433 233333344421 1245566555432
Q ss_pred CCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 535 GRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 535 gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
..+.+.+.+++.++.+..++.+++..+...+..
T Consensus 161 --~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~ 193 (585)
T PRK14950 161 --HKVPATILSRCQRFDFHRHSVADMAAHLRKIAA 193 (585)
T ss_pred --hhhhHHHHhccceeeCCCCCHHHHHHHHHHHHH
Confidence 247788899999999999999999888777654
No 188
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=3.4e-05 Score=83.44 Aligned_cols=143 Identities=14% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC----------------------------CceEEEEEeccC
Q psy17974 398 IMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN----------------------------TWAALTINFSAQ 446 (583)
Q Consensus 398 ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~----------------------------~~~~~~i~fS~~ 446 (583)
.+..++..| +.+|++||+|+|||++++.+++.+.-.. ...++.++-+..
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~ 106 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN 106 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeeccccc
Confidence 456666665 3489999999999999999988763110 001111221122
Q ss_pred CChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEE
Q psy17974 447 TSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLC 526 (583)
Q Consensus 447 Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~i 526 (583)
...+++.++. ..+. +.|-.+.+-|++|||++.-..+ ....+| -.++. + ...+.+|
T Consensus 107 ~~id~Ir~l~-~~~~------~~p~~~~~kvvIIdea~~l~~~-----~~~~LL-k~LEe-----p-------~~~t~~I 161 (397)
T PRK14955 107 NSVDDIRLLR-ENVR------YGPQKGRYRVYIIDEVHMLSIA-----AFNAFL-KTLEE-----P-------PPHAIFI 161 (397)
T ss_pred CCHHHHHHHH-HHHh------hchhcCCeEEEEEeChhhCCHH-----HHHHHH-HHHhc-----C-------CCCeEEE
Confidence 2234444432 2221 3355566678999998875432 122333 33331 1 1234555
Q ss_pred EecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 527 TACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 527 aa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+++.+ ..+.+.+.+++.++.+..++.+++......+++
T Consensus 162 l~t~~~----~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 162 FATTEL----HKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred EEeCCh----HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 555432 367788999999999999999999887777664
No 189
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.06 E-value=2.6e-05 Score=83.39 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=95.9
Q ss_pred ccceeeCchhhhHHHHHHHHHhc----CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH--
Q psy17974 383 FDMMVPTIDTIRFGSIMEKLLLV----NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL-- 456 (583)
Q Consensus 383 ~~i~VpT~dt~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i-- 456 (583)
.+-||+++...........+... ..|++|+||+|+|||.|++++-+... ........+..++ ..-+++.+
T Consensus 86 FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~-~~~~~a~v~y~~s---e~f~~~~v~a 161 (408)
T COG0593 86 FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEAL-ANGPNARVVYLTS---EDFTNDFVKA 161 (408)
T ss_pred hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHH-hhCCCceEEeccH---HHHHHHHHHH
Confidence 35688888777666677777664 57999999999999999998866542 1121122232222 22222322
Q ss_pred --HhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCC-hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 457 --EGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQP-PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 457 --e~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~-~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++.+++-++ .|. --++.|||+..-..+. ++|. ...++..+.+.|+ ++|.|+..+.
T Consensus 162 ~~~~~~~~Fk~-~y~-----~dlllIDDiq~l~gk~-~~qeefFh~FN~l~~~~k---------------qIvltsdr~P 219 (408)
T COG0593 162 LRDNEMEKFKE-KYS-----LDLLLIDDIQFLAGKE-RTQEEFFHTFNALLENGK---------------QIVLTSDRPP 219 (408)
T ss_pred HHhhhHHHHHH-hhc-----cCeeeechHhHhcCCh-hHHHHHHHHHHHHHhcCC---------------EEEEEcCCCc
Confidence 223333222 221 2268899998744331 1222 2344555555442 4555554332
Q ss_pred CCCCCCChhhhccce---EEEeCCCCHHHHHHHHHHH
Q psy17974 534 GGRMPLTPRFVRHFG---LLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~---vi~i~~p~~~sl~~I~~~~ 567 (583)
..-..+.+||.+||. ++.+.+|+.+....|....
T Consensus 220 ~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 220 KELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred hhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 333456799999984 8999999999999998874
No 190
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.06 E-value=1.9e-05 Score=83.68 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=86.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC---------------------------------ChHH-H
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT---------------------------------SSAR-T 452 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T---------------------------------t~~~-l 452 (583)
..+|+.|+.|+|||++++++..-|+...-..-..++|.+.. +..+ +
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 48899999999999999999886642221111112222211 1111 2
Q ss_pred HHHHH--hhhhhhcCccccC---CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhC-CeeecCCCeeEeecCeEEE
Q psy17974 453 QEILE--GKLDKRTKTLLGA---PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG-GLYDRDKMFWKTLQDVVLC 526 (583)
Q Consensus 453 q~~ie--~~l~~~~~~~~~p---~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~-g~yd~~~~~~~~i~~i~~i 526 (583)
.+.+. .-++. ....|.| +...+.|+||||+|+.... +...|=..+..| .--.++.....+-.++.+|
T Consensus 119 vGslDi~ka~~~-g~~af~PGlLa~AnRGIlYvDEvnlL~d~------lvd~LLd~aaeG~n~vereGisi~hpa~fvli 191 (423)
T COG1239 119 VGSLDIEKALEE-GPKAFQPGLLARANRGILYVDEVNLLDDH------LVDALLDVAAEGVNDVEREGISIRHPARFLLI 191 (423)
T ss_pred ccccCHHHHHhc-CccccCCcchhhccCCEEEEeccccccHH------HHHHHHHHHHhCCceeeeCceeeccCccEEEE
Confidence 11111 00110 1123433 3567889999999996432 444454555544 2234455577777899999
Q ss_pred EecCCCCCCCCCCChhhhccce-EEEeCCCCHHHHH
Q psy17974 527 TACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDTLK 561 (583)
Q Consensus 527 aa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~sl~ 561 (583)
|||||-.| .|-+-|+-||- .+.+.+|.+-+..
T Consensus 192 gTmNPEeG---eLrpqLlDRfg~~v~~~~~~~~~~r 224 (423)
T COG1239 192 GTMNPEEG---ELRPQLLDRFGLEVDTHYPLDLEER 224 (423)
T ss_pred eecCcccc---ccchhhHhhhcceeeccCCCCHHHH
Confidence 99999743 67778888875 5777777664443
No 191
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.05 E-value=7.5e-05 Score=81.15 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=118.4
Q ss_pred ccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh
Q psy17974 383 FDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK 462 (583)
Q Consensus 383 ~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~ 462 (583)
.+++-.++...+....+..+....-|||+.|++||||-.+++++-..- ...+-.++.+||.+-+. ..+|+.|-.
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S-~R~~~PFVavNcaAip~-----~l~ESELFG 214 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS-PRAKGPFIAVNCAAIPE-----NLLESELFG 214 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC-cccCCCceeeecccCCH-----HHHHHHhhc
Confidence 455666777788888999999999999999999999999999876643 34455788999988553 457787766
Q ss_pred hcCcccc-CC---CC-----CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 463 RTKTLLG-AP---LG-----KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 463 ~~~~~~~-p~---~g-----k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
..+|.|. +. .| ....+|+|||---+.+. | .-+||-+-+ +.+......+- --.|+++|||++.+-
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~---Q--~kLLRvLqe-~~~~rvG~~~~-i~vdvRiIaaT~~dL 287 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLEL---Q--VKLLRVLQE-REFERVGGNKP-IKVDVRIIAATNRDL 287 (464)
T ss_pred ccccCcCCcccccCcceeEcCCceEEeeccccCCHHH---H--HHHHHHHHc-CeeEecCCCcc-cceeeEEEeecCcCH
Confidence 5666552 21 11 24589999996433221 1 347776654 55554332211 125899999998762
Q ss_pred -----CCCCCCChhhhccceEEEeCCCC----HHHHHHHHHHHhccccc
Q psy17974 534 -----GGRMPLTPRFVRHFGLLSLPSPT----EDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 534 -----~gr~~l~~Rllr~f~vi~i~~p~----~~sl~~I~~~~l~~~l~ 573 (583)
.|++ =+-|.-+.+|+.+.-|. .+++--++..++..+-.
T Consensus 288 ~~~v~~G~F--ReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~ 334 (464)
T COG2204 288 EEEVAAGRF--REDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAA 334 (464)
T ss_pred HHHHHcCCc--HHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHH
Confidence 3443 35666777887766663 36777788877776543
No 192
>KOG0736|consensus
Probab=98.05 E-value=2.4e-05 Score=87.68 Aligned_cols=144 Identities=17% Similarity=0.279 Sum_probs=96.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
+-.|||.|+||||||+.++.+++.+ +..+..+.+..-+. +......+..-..+ +....++|+|+-++
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~l----g~h~~evdc~el~~~s~~~~etkl~~~f~~-------a~~~~pavifl~~~ 499 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASEL----GLHLLEVDCYELVAESASHTETKLQAIFSR-------ARRCSPAVLFLRNL 499 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHh----CCceEeccHHHHhhcccchhHHHHHHHHHH-------HhhcCceEEEEecc
Confidence 3468999999999999999999987 33444555543221 11111111111121 11235789999999
Q ss_pred CCCCcccCCCC--ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHHHH
Q psy17974 484 NMPKLETYGAQ--PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDTL 560 (583)
Q Consensus 484 n~p~~d~yg~q--~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~sl 560 (583)
+.-..|+.|.. +...-+|+++...- ....-..+.+||+++... .+++-+.++|. .|.++.|++++.
T Consensus 500 dvl~id~dgged~rl~~~i~~~ls~e~-------~~~~~~~~ivv~t~~s~~----~lp~~i~~~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 500 DVLGIDQDGGEDARLLKVIRHLLSNED-------FKFSCPPVIVVATTSSIE----DLPADIQSLFLHEIEVPALSEEQR 568 (953)
T ss_pred ceeeecCCCchhHHHHHHHHHHHhccc-------ccCCCCceEEEEeccccc----cCCHHHHHhhhhhccCCCCCHHHH
Confidence 99888876632 34566777776111 111234678999988765 79999999996 899999999999
Q ss_pred HHHHHHHhccc
Q psy17974 561 KVIFKVRTSPG 571 (583)
Q Consensus 561 ~~I~~~~l~~~ 571 (583)
.+|++-++..+
T Consensus 569 l~iLq~y~~~~ 579 (953)
T KOG0736|consen 569 LEILQWYLNHL 579 (953)
T ss_pred HHHHHHHHhcc
Confidence 99888777654
No 193
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.03 E-value=6.6e-05 Score=83.47 Aligned_cols=181 Identities=18% Similarity=0.253 Sum_probs=98.3
Q ss_pred eeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCCceEEE-
Q psy17974 365 TPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNTWAALT- 440 (583)
Q Consensus 365 ~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~- 440 (583)
.+|.++..+. ...++.|...-......+++..+..+ +-+||+||+|||||++++.+++++. . .+..
T Consensus 7 ~~W~~ky~P~------~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg-~---~v~Ew 76 (519)
T PF03215_consen 7 EPWVEKYAPK------TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG-F---EVQEW 76 (519)
T ss_pred CccchhcCCC------CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC-C---eeEEe
Confidence 4677765432 13455666554555556666655433 3478899999999999999998872 1 1111
Q ss_pred ---EE----------eccC--------CChHHHHHHHHhhhhhhcCcc---ccC-CCCCeEEEEecCCCCCCcccCCCCC
Q psy17974 441 ---IN----------FSAQ--------TSSARTQEILEGKLDKRTKTL---LGA-PLGKRLAVFVDDVNMPKLETYGAQP 495 (583)
Q Consensus 441 ---i~----------fS~~--------Tt~~~lq~~ie~~l~~~~~~~---~~p-~~gk~~vlfiDDln~p~~d~yg~q~ 495 (583)
+. +... ...+.++..+ +...+.+. .|. ...++-||.|||+ |..-.-++..
T Consensus 77 ~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~---l~~s~y~~l~~~g~~~~~~~kvILVEDl--PN~~~~~~~~ 151 (519)
T PF03215_consen 77 INPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFL---LRASKYSSLSMSGSNSSSNKKVILVEDL--PNVFHRDTSR 151 (519)
T ss_pred cCCCCccccccccccccccccccccccchhhhhcccc---ccccccccccccCCCcCCCceEEEeecc--ccccchhHHH
Confidence 00 0000 0011111110 11101111 111 2245668899997 4322222344
Q ss_pred hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEe-c-CCCCC-C-C-------CCCChhhhccc--eEEEeCCCCHHHHHH
Q psy17974 496 PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTA-C-APPGG-G-R-------MPLTPRFVRHF--GLLSLPSPTEDTLKV 562 (583)
Q Consensus 496 ~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa-~-~p~~~-g-r-------~~l~~Rllr~f--~vi~i~~p~~~sl~~ 562 (583)
..+.||+++..++.. .+.||.+ + ...++ + + .-+++.++.|. ..|.+.+.....+..
T Consensus 152 f~~~L~~~l~~~~~~-----------PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkK 220 (519)
T PF03215_consen 152 FREALRQYLRSSRCL-----------PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKK 220 (519)
T ss_pred HHHHHHHHHHcCCCC-----------CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHH
Confidence 667888888765431 4555555 1 11221 1 1 14677777765 468899999988888
Q ss_pred HHHHHhccc
Q psy17974 563 IFKVRTSPG 571 (583)
Q Consensus 563 I~~~~l~~~ 571 (583)
....++...
T Consensus 221 aL~rI~~~E 229 (519)
T PF03215_consen 221 ALKRILKKE 229 (519)
T ss_pred HHHHHHHHH
Confidence 888877644
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=2.2e-05 Score=80.07 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=45.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh----HHHHHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS----ARTQEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~----~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
.+.|+||+||+|||||.+++.+++.+. ..+..-.....|.+ +++..++..-+..-. |.-....+.|+||
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~Ln----VPFaiADATtLTEAGYVGEDVENillkLlqaad---ydV~rAerGIIyI 168 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILN----VPFAIADATTLTEAGYVGEDVENILLKLLQAAD---YDVERAERGIIYI 168 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhC----CCeeeccccchhhccccchhHHHHHHHHHHHcc---cCHHHHhCCeEEE
Confidence 457999999999999999999999772 22222222233333 334444433332211 2222345669999
Q ss_pred cCCCCCC
Q psy17974 481 DDVNMPK 487 (583)
Q Consensus 481 DDln~p~ 487 (583)
|||+--.
T Consensus 169 DEIDKIa 175 (408)
T COG1219 169 DEIDKIA 175 (408)
T ss_pred echhhhh
Confidence 9998643
No 195
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.0001 Score=83.84 Aligned_cols=142 Identities=15% Similarity=0.265 Sum_probs=91.8
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhc---------------------ccCCceEEEEEeccCCChHHHHH
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLL---------------------ASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~---------------------~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+...++.| +..||+||+|+|||++++.+++.+. ....+.+..++.+.....++++.
T Consensus 29 L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~ 108 (614)
T PRK14971 29 LKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRN 108 (614)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHH
Confidence 44555555 3479999999999999998887652 00123344454443344556665
Q ss_pred HHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC
Q psy17974 455 ILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 455 ~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~ 534 (583)
.++. +. +.|..+++-|++|||.++-..+ ....|+..+|.- ...+.||.+++.+
T Consensus 109 li~~-~~------~~P~~~~~KVvIIdea~~Ls~~------a~naLLK~LEep------------p~~tifIL~tt~~-- 161 (614)
T PRK14971 109 LIEQ-VR------IPPQIGKYKIYIIDEVHMLSQA------AFNAFLKTLEEP------------PSYAIFILATTEK-- 161 (614)
T ss_pred HHHH-Hh------hCcccCCcEEEEEECcccCCHH------HHHHHHHHHhCC------------CCCeEEEEEeCCc--
Confidence 5432 11 1344455567899998886543 344555555521 1245566666533
Q ss_pred CCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 535 GRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 535 gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
..|.+.+.+|+.++.+..++.+++......++.
T Consensus 162 --~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~ 194 (614)
T PRK14971 162 --HKILPTILSRCQIFDFNRIQVADIVNHLQYVAS 194 (614)
T ss_pred --hhchHHHHhhhheeecCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999887776654
No 196
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.00 E-value=4.2e-06 Score=88.27 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=82.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh--hcCccc---cC-CCCCeEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK--RTKTLL---GA-PLGKRLAV 478 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~--~~~~~~---~p-~~gk~~vl 478 (583)
.+.|+||+|.||+|||.+++.+.+-. + ..++.+....|.+. +- ..+.+ ..++.. |+ ....+.|+
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~--p---r~v~~~g~~~s~~g-Lt----a~~~~d~~~~~~~leaGalvlad~Gic 125 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLA--P---RSVYTSGKGSSAAG-LT----ASVSRDPVTGEWVLEAGALVLADGGIC 125 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT---S---SEEEEECCGSTCCC-CC----EEECCCGGTSSECEEE-HHHHCTTSEE
T ss_pred cccceeeccchhhhHHHHHHHHHhhC--C---ceEEECCCCcccCC-cc----ceeccccccceeEEeCCchhcccCcee
Confidence 45699999999999999998654322 1 12333333322211 11 01111 112211 11 12344689
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCC-eeEeecCeEEEEecCCCCCC---------CCCCChhhhccce
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKM-FWKTLQDVVLCTACAPPGGG---------RMPLTPRFVRHFG 548 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~-~~~~i~~i~~iaa~~p~~~g---------r~~l~~Rllr~f~ 548 (583)
+|||++....+ ....|-..+|++..--.+.. ...--.++.++|||||.+|- .-.+++.++++|-
T Consensus 126 cIDe~dk~~~~------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFD 199 (331)
T PF00493_consen 126 CIDEFDKMKED------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFD 199 (331)
T ss_dssp EECTTTT--CH------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-S
T ss_pred eecccccccch------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcC
Confidence 99999986654 36778888998766544432 33445689999999997531 1258899999999
Q ss_pred EEE--eCCCCHHHHHHHHHHHhcccccC
Q psy17974 549 LLS--LPSPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 549 vi~--i~~p~~~sl~~I~~~~l~~~l~~ 574 (583)
+|. .+.|+.+.=..|-..+++.|...
T Consensus 200 Lif~l~D~~d~~~D~~la~~il~~~~~~ 227 (331)
T PF00493_consen 200 LIFLLRDKPDEEEDERLAEHILDSHRNG 227 (331)
T ss_dssp EEECC--TTT-HHHHHHHHHHHTTT---
T ss_pred EEEEeccccccccccccceEEEeccccc
Confidence 766 47888777777888777776543
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.97 E-value=9.8e-07 Score=84.76 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=50.1
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh-hcCccccCCCCCeEEE
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK-RTKTLLGAPLGKRLAV 478 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~-~~~~~~~p~~gk~~vl 478 (583)
..+++.+.+++|.||+|+|||.++.++++.+.. .++.+.+++++ .+.+.+...-.. +....+.. -.+.-++
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~------~L~~~l~~~~~~~~~~~~~~~-l~~~dlL 112 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITAS------DLLDELKQSRSDGSYEELLKR-LKRVDLL 112 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHH------HHHHHHHCCHCCTTHCHHHHH-HHTSSCE
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecC------ceeccccccccccchhhhcCc-cccccEe
Confidence 456778999999999999999999999887643 56777777543 333333322110 00000000 0112267
Q ss_pred EecCCCCCCcccCCCCChHHHHHHH
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQF 503 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ 503 (583)
+|||+-.-..+.++.....++|..-
T Consensus 113 ilDDlG~~~~~~~~~~~l~~ii~~R 137 (178)
T PF01695_consen 113 ILDDLGYEPLSEWEAELLFEIIDER 137 (178)
T ss_dssp EEETCTSS---HHHHHCTHHHHHHH
T ss_pred cccccceeeecccccccchhhhhHh
Confidence 8999987655544444444444443
No 198
>KOG1051|consensus
Probab=97.95 E-value=1.6e-05 Score=91.99 Aligned_cols=158 Identities=20% Similarity=0.322 Sum_probs=103.2
Q ss_pred HHHHHHHhcC-CceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 397 SIMEKLLLVN-HPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 397 ~ll~~~l~~~-~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
.+++.+.... .|-+|+|+||+|||.++..+++..... .....+.+.|.+......-.+=+|.++....+.+-.
T Consensus 198 Rvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~ 277 (898)
T KOG1051|consen 198 RVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES 277 (898)
T ss_pred HHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc
Confidence 4455555544 489999999999999999998865211 123455666654322222112233333322222111
Q ss_pred CCCCCeEEEEecCCCCCCccc--CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChhhhcc
Q psy17974 470 APLGKRLAVFVDDVNMPKLET--YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFVRH 546 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~--yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~Rllr~ 546 (583)
.|...|+|+||+|+..... ||.-....+|.-.+-+|| +.+|||++.... --..=.|.|-|+
T Consensus 278 --~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~--------------l~~IGatT~e~Y~k~iekdPalErr 341 (898)
T KOG1051|consen 278 --GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG--------------LWCIGATTLETYRKCIEKDPALERR 341 (898)
T ss_pred --CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC--------------eEEEecccHHHHHHHHhhCcchhhC
Confidence 5678899999999864332 555567788888888776 457787664332 224557899999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 547 FGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 547 f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
|..+.++.|+.+++..|+...-..
T Consensus 342 w~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 342 WQLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred cceeEeccCcccchhhhhhhhhhh
Confidence 999999999998888888777655
No 199
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.93 E-value=0.00018 Score=72.05 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=77.5
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC-----------------hHHHHHHHHhhhhh
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS-----------------SARTQEILEGKLDK 462 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt-----------------~~~lq~~ie~~l~~ 462 (583)
+.++.....+.++|++|||||+++..++..+. ..+..+.+ +++... .+.+...++...++
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l-~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~ 83 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFL-ITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEK 83 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEE-EecCCchhhhhhcchhhccccccHHHHHHHHHHHHHH
Confidence 45666667899999999999999999998763 34444433 222111 11111111111110
Q ss_pred hcCccccCC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCC
Q psy17974 463 RTKTLLGAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPL 539 (583)
Q Consensus 463 ~~~~~~~p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l 539 (583)
..+-.-..+ ...+.++.+||+.. .. .+ -+.+++++.+|.=| ++.++-+|...- .+
T Consensus 84 I~k~~~k~~~~k~~~~~LiIlDD~~~---~~--~k--~~~l~~~~~~gRH~-----------~is~i~l~Q~~~----~l 141 (241)
T PF04665_consen 84 IEKYIKKSPQKKNNPRFLIILDDLGD---KK--LK--SKILRQFFNNGRHY-----------NISIIFLSQSYF----HL 141 (241)
T ss_pred HHHHhhhhcccCCCCCeEEEEeCCCC---ch--hh--hHHHHHHHhccccc-----------ceEEEEEeeecc----cC
Confidence 001111112 23478999999743 11 11 24677888766433 344555554432 56
Q ss_pred ChhhhccceEEEeCCCCHHHHHHHHHHHh
Q psy17974 540 TPRFVRHFGLLSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 540 ~~Rllr~f~vi~i~~p~~~sl~~I~~~~l 568 (583)
|+-+......+.+-..+..++..|+..+-
T Consensus 142 p~~iR~n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 142 PPNIRSNIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred CHHHhhcceEEEEecCcHHHHHHHHHhcc
Confidence 66554444433322357888888877653
No 200
>PRK08116 hypothetical protein; Validated
Probab=97.93 E-value=1.3e-05 Score=82.02 Aligned_cols=38 Identities=32% Similarity=0.484 Sum_probs=29.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
.+.+++|+|++|||||.++.++++.+.. .+..++.+++
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~ 150 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNF 150 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEH
Confidence 3457999999999999999999998743 3556666654
No 201
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00015 Score=82.21 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=86.8
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC----------------------------CceEEEEEeccCC
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN----------------------------TWAALTINFSAQT 447 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~----------------------------~~~~~~i~fS~~T 447 (583)
+..++..| +..|++||+|+|||++++.+++.+.-.. ...+..+.-....
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~ 107 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNN 107 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccC
Confidence 55566554 4589999999999999999988762110 0111112111222
Q ss_pred ChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 448 SSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 448 t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
..+++..+++. +. ++|-.+.+-|++|||.+.-..+ ..+.|.-.++.- ...+.+|.
T Consensus 108 ~vd~Ir~l~e~-~~------~~P~~~~~KVvIIdEad~Lt~~------a~naLLK~LEeP------------p~~tv~IL 162 (620)
T PRK14954 108 SVDDIRQLREN-VR------YGPQKGRYRVYIIDEVHMLSTA------AFNAFLKTLEEP------------PPHAIFIF 162 (620)
T ss_pred CHHHHHHHHHH-HH------hhhhcCCCEEEEEeChhhcCHH------HHHHHHHHHhCC------------CCCeEEEE
Confidence 34555544322 11 3455555668899998775432 233444445521 12345555
Q ss_pred ecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 528 ACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 528 a~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+++.+ ..+.+.+.+++.++.+..++.+++......++.
T Consensus 163 ~t~~~----~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~ 200 (620)
T PRK14954 163 ATTEL----HKIPATIASRCQRFNFKRIPLDEIQSQLQMICR 200 (620)
T ss_pred EeCCh----hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHH
Confidence 55433 368888999999999999999998887776654
No 202
>PF14516 AAA_35: AAA-like domain
Probab=97.92 E-value=0.00016 Score=76.28 Aligned_cols=163 Identities=13% Similarity=0.167 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC-----CChHHHHHHHHhhhhhh--------
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ-----TSSARTQEILEGKLDKR-------- 463 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~-----Tt~~~lq~~ie~~l~~~-------- 463 (583)
.+.+.+.+.|..+.+.||..+|||+++..+++.+. ..++.++.++|+.. ++.+.+.+.+-..+.+.
T Consensus 22 ~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~-~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~ 100 (331)
T PF14516_consen 22 ECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQ-QQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLD 100 (331)
T ss_pred HHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHH-HCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHH
Confidence 34556677799999999999999999999988873 46899999999863 22333333322221110
Q ss_pred ------cCc----------cccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 464 ------TKT----------LLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 464 ------~~~----------~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
.+. ..-....+++|++|||++..-....-+...+.+||.|.+.+. ....|. .+.+|.
T Consensus 101 ~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~----~~~~~~---~L~li~ 173 (331)
T PF14516_consen 101 EYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK----NNPIWQ---KLRLIL 173 (331)
T ss_pred HHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc----cCcccc---eEEEEE
Confidence 000 011234689999999998754322112345677887766443 122443 455555
Q ss_pred ecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHH
Q psy17974 528 ACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 528 a~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~ 567 (583)
+...+......+...-.+....+.++..+.+++....+.+
T Consensus 174 ~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 174 AGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred ecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 5433221111111111144456899999999988876655
No 203
>PRK04132 replication factor C small subunit; Provisional
Probab=97.91 E-value=8.6e-05 Score=86.39 Aligned_cols=128 Identities=11% Similarity=0.129 Sum_probs=92.1
Q ss_pred cCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCC-CCeEEEEecCCCCCCcccC
Q psy17974 414 VTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPL-GKRLAVFVDDVNMPKLETY 491 (583)
Q Consensus 414 p~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~-gk~~vlfiDDln~p~~d~y 491 (583)
|.+.|||+++..+++.+... -+..++.+|-|.....+.+++.+..-... .|.+ ++.-|++|||++.-..+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~------~~~~~~~~KVvIIDEaD~Lt~~-- 645 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART------KPIGGASFKIIFLDEADALTQD-- 645 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhc------CCcCCCCCEEEEEECcccCCHH--
Confidence 77779999999999986321 12356667766656677787776543322 1222 24468999999987654
Q ss_pred CCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 492 GAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 492 g~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
....||-.+|.- ..++.||.+||++. .+.+.+.+|+.++.++.|+.+++..+...+.+
T Consensus 646 ----AQnALLk~lEep------------~~~~~FILi~N~~~----kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 646 ----AQQALRRTMEMF------------SSNVRFILSCNYSS----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ----HHHHHHHHhhCC------------CCCeEEEEEeCChh----hCchHHhhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 345566677621 13678999999986 78899999999999999999999988777765
No 204
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.90 E-value=0.00019 Score=78.57 Aligned_cols=167 Identities=17% Similarity=0.141 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-C
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-A 470 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p 470 (583)
..+....+..+...+.||++.|++||||+++++.+.... .......+.++|++.. .. .+++.+-...++.|. +
T Consensus 148 ~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~v~v~c~~~~-~~----~~~~~lfg~~~~~~~~~ 221 (445)
T TIGR02915 148 MQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS-DRKDKRFVAINCAAIP-EN----LLESELFGYEKGAFTGA 221 (445)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC-CcCCCCeEEEECCCCC-hH----HHHHHhcCCCCCCcCCC
Confidence 344555666677788999999999999999999886543 2234457788888753 22 333433222222221 1
Q ss_pred --------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---CCCCCC
Q psy17974 471 --------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---GGRMPL 539 (583)
Q Consensus 471 --------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---~gr~~l 539 (583)
......++|+||++.-..+ ..+-|.++++.+.+....... ..-.|+.+|+|++.+- -....+
T Consensus 222 ~~~~~g~~~~a~~gtl~l~~i~~l~~~------~q~~l~~~l~~~~~~~~~~~~-~~~~~~rii~~~~~~l~~~~~~~~~ 294 (445)
T TIGR02915 222 VKQTLGKIEYAHGGTLFLDEIGDLPLN------LQAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQDLKRMIAEGTF 294 (445)
T ss_pred ccCCCCceeECCCCEEEEechhhCCHH------HHHHHHHHHhhCeEEeCCCCc-eeeeceEEEEecCCCHHHHHHcCCc
Confidence 0123458999999865543 345556677766543322211 1224899999988752 122356
Q ss_pred ChhhhccceEE--EeCCCCH--HHHHHHHHHHhccc
Q psy17974 540 TPRFVRHFGLL--SLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 540 ~~Rllr~f~vi--~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
.+.|..+++++ .+|+..+ +++..+...++..+
T Consensus 295 ~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~ 330 (445)
T TIGR02915 295 REDLFYRIAEISITIPPLRSRDGDAVLLANAFLERF 330 (445)
T ss_pred cHHHHHHhccceecCCCchhchhhHHHHHHHHHHHH
Confidence 67777777654 4554432 45666666666553
No 205
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.89 E-value=1.5e-05 Score=80.82 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=57.7
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
++..+.+++|+||||+|||.++-++.+++. ..++.+.++ |.++.++++-...-+......+--.-.+--|++||
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~-----~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiD 174 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFI-----TAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIID 174 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEE-----EHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEe
Confidence 344899999999999999999999999885 556677666 34445554422211100000000001223388999
Q ss_pred CCCCCCcccCCCCChHHHHHH
Q psy17974 482 DVNMPKLETYGAQPPIELLRQ 502 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq 502 (583)
|+-....++++..-.++++-+
T Consensus 175 DlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 175 DIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred cccCccCCHHHHHHHHHHHHH
Confidence 999888776554434443333
No 206
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.85 E-value=8.1e-05 Score=73.38 Aligned_cols=134 Identities=19% Similarity=0.353 Sum_probs=83.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH--HHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI--LEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~--ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
.+|||.|..|||||+++++++.++. ......+-+ +.+++..+ |...+. ...++.|+||||+.
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~e~~-~~glrLVEV------~k~dl~~Lp~l~~~Lr---------~~~~kFIlFcDDLS 149 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLNEYA-DEGLRLVEV------DKEDLATLPDLVELLR---------ARPEKFILFCDDLS 149 (287)
T ss_pred cceEEecCCCCChHHHHHHHHHHHH-hcCCeEEEE------cHHHHhhHHHHHHHHh---------cCCceEEEEecCCC
Confidence 5899999999999999999999873 344455544 23333321 111111 12468999999998
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---------CCCC-CCCh--------hhhcc
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---------GGRM-PLTP--------RFVRH 546 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---------~gr~-~l~~--------Rllr~ 546 (583)
.-.-| ..--.|+..+| ||.--+ ..||.|-||.|.-. .+.. .|.+ .|.-|
T Consensus 150 Fe~gd-----~~yK~LKs~Le-G~ve~r-------P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDR 216 (287)
T COG2607 150 FEEGD-----DAYKALKSALE-GGVEGR-------PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDR 216 (287)
T ss_pred CCCCc-----hHHHHHHHHhc-CCcccC-------CCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhh
Confidence 75544 24567888888 444322 35778888876321 0100 1111 23445
Q ss_pred ce-EEEeCCCCHHHHHHHHHHHhc
Q psy17974 547 FG-LLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 547 f~-vi~i~~p~~~sl~~I~~~~l~ 569 (583)
|- -+.+.++++++-..|...+.+
T Consensus 217 FGLwL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 217 FGLWLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred cceeecccCCCHHHHHHHHHHHHH
Confidence 54 378889999997766666654
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.85 E-value=3.4e-05 Score=81.10 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=55.8
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh-hhhhhcCcc--ccCCCCC
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG-KLDKRTKTL--LGAPLGK 474 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~-~l~~~~~~~--~~p~~gk 474 (583)
+++.+-..+.+++|+||+|+|||.++.++++.+. ..++.+++++. ..+...+.. +.+...... +..- .+
T Consensus 175 f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t~------~~l~~~l~~~~~~~~~~~~~~~~~l-~~ 246 (329)
T PRK06835 175 FIENFDKNNENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRTA------DELIEILREIRFNNDKELEEVYDLL-IN 246 (329)
T ss_pred HHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEEH------HHHHHHHHHHHhccchhHHHHHHHh-cc
Confidence 4444445679999999999999999999998874 33566665532 223222211 111100000 0000 11
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHH
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLD 505 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld 505 (583)
--+++|||+.......+..+...+++..-.+
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~ 277 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLL 277 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHH
Confidence 1278999998865554444444444444433
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.85 E-value=1.9e-05 Score=72.44 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=74.4
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCC
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP 471 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~ 471 (583)
..+...-++.+...+.||+|+|++||||+.+++.+...-. ...-..+.+++.. .. ++.++. .
T Consensus 7 ~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~-~~~~~~~~~~~~~-~~----~~~l~~----a-------- 68 (138)
T PF14532_consen 7 MRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG-RANGPFIVIDCAS-LP----AELLEQ----A-------- 68 (138)
T ss_dssp HHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT-TCCS-CCCCCHHC-TC----HHHHHH----C--------
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC-ccCCCeEEechhh-Cc----HHHHHH----c--------
Confidence 4556667788889999999999999999999997766432 2122223333333 22 222222 1
Q ss_pred CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCCCCChhhhccce
Q psy17974 472 LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRMPLTPRFVRHFG 548 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~~l~~Rllr~f~ 548 (583)
+...+||+|++....+ ..+.|.++++... -.++++|+++..+-. ....+.++|..++.
T Consensus 69 --~~gtL~l~~i~~L~~~------~Q~~L~~~l~~~~-----------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 69 --KGGTLYLKNIDRLSPE------AQRRLLDLLKRQE-----------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp --TTSEEEEECGCCS-HH------HHHHHHHHHHHCT-----------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred --CCCEEEECChHHCCHH------HHHHHHHHHHhcC-----------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 2336889999876654 2445556665421 135688888876532 13457788888886
Q ss_pred --EEEeC
Q psy17974 549 --LLSLP 553 (583)
Q Consensus 549 --vi~i~ 553 (583)
.|.+|
T Consensus 130 ~~~i~lP 136 (138)
T PF14532_consen 130 QLEIHLP 136 (138)
T ss_dssp TCEEEE-
T ss_pred CCEEeCC
Confidence 45554
No 209
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00042 Score=73.69 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=51.5
Q ss_pred CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 470 APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
|..|++-|++|||++.-..+. ...+|+. +|.. ..++.||..++.|+ .+.+-+.+++..
T Consensus 137 ~~~g~~rVviIDeAd~l~~~a-----anaLLk~-LEEp------------p~~~~fiLit~~~~----~llptIrSRc~~ 194 (351)
T PRK09112 137 SGDGNWRIVIIDPADDMNRNA-----ANAILKT-LEEP------------PARALFILISHSSG----RLLPTIRSRCQP 194 (351)
T ss_pred cccCCceEEEEEchhhcCHHH-----HHHHHHH-HhcC------------CCCceEEEEECChh----hccHHHHhhccE
Confidence 455667799999999765442 3344444 3421 12344444455554 567888999999
Q ss_pred EEeCCCCHHHHHHHHHHH
Q psy17974 550 LSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~ 567 (583)
+.+++|+.+++..+....
T Consensus 195 i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 195 ISLKPLDDDELKKALSHL 212 (351)
T ss_pred EEecCCCHHHHHHHHHHh
Confidence 999999999999888763
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00034 Score=73.81 Aligned_cols=140 Identities=10% Similarity=0.146 Sum_probs=84.7
Q ss_pred HHHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEecc-CCChHHHH
Q psy17974 398 IMEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSA-QTSSARTQ 453 (583)
Q Consensus 398 ll~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~-~Tt~~~lq 453 (583)
.+...+..|+ ..||+||+|+||+++++.+++.+.-.+ .-....+.... ..+.+++.
T Consensus 17 ~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir 96 (329)
T PRK08058 17 MLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIR 96 (329)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHH
Confidence 3445555553 459999999999999999988752111 01122333322 22334444
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
+.++ .+. +.|..|.+=|++|||.+.-..+ ....|+-.+|.- ..++.||.+++.+.
T Consensus 97 ~l~~-~~~------~~~~~~~~kvviI~~a~~~~~~------a~NaLLK~LEEP------------p~~~~~Il~t~~~~ 151 (329)
T PRK08058 97 YLKE-EFS------KSGVESNKKVYIIEHADKMTAS------AANSLLKFLEEP------------SGGTTAILLTENKH 151 (329)
T ss_pred HHHH-HHh------hCCcccCceEEEeehHhhhCHH------HHHHHHHHhcCC------------CCCceEEEEeCChH
Confidence 4432 122 1233344557889998765433 334455555521 23455666665443
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHH
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
.+.+-+.+|+.++.+.+|+.+++..++..
T Consensus 152 ----~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 ----QILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ----hCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 78899999999999999999998777653
No 211
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.81 E-value=3.8e-05 Score=75.50 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH-----hh----hhhhcC-----------
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE-----GK----LDKRTK----------- 465 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie-----~~----l~~~~~----------- 465 (583)
+..++|+||.|+|||++++.+++.+. ...+..+.+..........+...+. .. +.....
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELK-EKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT---EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhh-hcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 58999999999999999999999773 2233233333322232222333211 11 110000
Q ss_pred --cccc---------CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-
Q psy17974 466 --TLLG---------APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG- 533 (583)
Q Consensus 466 --~~~~---------p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~- 533 (583)
.... ...++++|++|||++.......+....+..|+.+++... .-.++.+|.+.+..+
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~v~~~S~~~~ 168 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL----------SQQNVSIVITGSSDSL 168 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--------------TTEEEEEEESSHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc----------ccCCceEEEECCchHH
Confidence 0000 113445999999999866111122345667777777511 112344443322221
Q ss_pred -CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 534 -GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 534 -~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.....-...+..++..+.+++.+.++....+....+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 169 MEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp HHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC
T ss_pred HHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh
Confidence 01111223344555569999999999999888876544
No 212
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00017 Score=75.26 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccC--------------------CceEEEEEeccCCChHHHHHHHHhhhhhhcCcc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASN--------------------TWAALTINFSAQTSSARTQEILEGKLDKRTKTL 467 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~--------------------~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~ 467 (583)
.+||+||||+|||+++..+++.+.... ...+..++-|.....+...+.+..-.+. ..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~---~~ 102 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEF---LS 102 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHH---hc
Confidence 499999999999999999998773111 1345556666554433222222222221 11
Q ss_pred ccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc
Q psy17974 468 LGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF 547 (583)
Q Consensus 468 ~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f 547 (583)
..+..+++-|++|||++.-..|. ...++|-+-+. -.++.|+.+||.+. .+-+-+.+++
T Consensus 103 ~~~~~~~~kviiidead~mt~~A-----~nallk~lEep-------------~~~~~~il~~n~~~----~il~tI~SRc 160 (325)
T COG0470 103 ESPLEGGYKVVIIDEADKLTEDA-----ANALLKTLEEP-------------PKNTRFILITNDPS----KILPTIRSRC 160 (325)
T ss_pred cCCCCCCceEEEeCcHHHHhHHH-----HHHHHHHhccC-------------CCCeEEEEEcCChh----hccchhhhcc
Confidence 12334556688999998766542 34455544432 24677888888665 6777899999
Q ss_pred eEEEeCCCCHHH
Q psy17974 548 GLLSLPSPTEDT 559 (583)
Q Consensus 548 ~vi~i~~p~~~s 559 (583)
.++.+..|+...
T Consensus 161 ~~i~f~~~~~~~ 172 (325)
T COG0470 161 QRIRFKPPSRLE 172 (325)
T ss_pred eeeecCCchHHH
Confidence 999998755543
No 213
>KOG2035|consensus
Probab=97.79 E-value=0.00022 Score=71.73 Aligned_cols=152 Identities=13% Similarity=0.257 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhcccC-----------------CceEEEEEec--cCCChHH
Q psy17974 393 IRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLASN-----------------TWAALTINFS--AQTSSAR 451 (583)
Q Consensus 393 ~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----------------~~~~~~i~fS--~~Tt~~~ 451 (583)
.+....+..+...+ -+.+++||+|+||-+.+..+++++.... +..+.++.-+ -..+|++
T Consensus 19 ~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD 98 (351)
T KOG2035|consen 19 EELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD 98 (351)
T ss_pred HHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh
Confidence 34444455555545 6899999999999999999998763210 1111111100 0122322
Q ss_pred --------HHHHHHhhhhhhcC-ccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecC
Q psy17974 452 --------TQEILEGKLDKRTK-TLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQD 522 (583)
Q Consensus 452 --------lq~~ie~~l~~~~~-~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~ 522 (583)
+|+++.. +.+... ..-+.. . --|+.|-+.+-...| +-..||.-+| ++..+
T Consensus 99 aG~~DRvViQellKe-vAQt~qie~~~qr-~-fKvvvi~ead~LT~d------AQ~aLRRTME------------kYs~~ 157 (351)
T KOG2035|consen 99 AGNYDRVVIQELLKE-VAQTQQIETQGQR-P-FKVVVINEADELTRD------AQHALRRTME------------KYSSN 157 (351)
T ss_pred cCcccHHHHHHHHHH-HHhhcchhhcccc-c-eEEEEEechHhhhHH------HHHHHHHHHH------------HHhcC
Confidence 3443321 111110 000111 1 125667777766666 3456777777 23457
Q ss_pred eEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 523 VVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 523 i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+++|..||..+ .+-+.+.+|+-.+.+|.|+++++..+.+.+++
T Consensus 158 ~RlIl~cns~S----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~ 200 (351)
T KOG2035|consen 158 CRLILVCNSTS----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLK 200 (351)
T ss_pred ceEEEEecCcc----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999876 78899999999999999999999999999886
No 214
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.76 E-value=0.00019 Score=77.42 Aligned_cols=135 Identities=23% Similarity=0.257 Sum_probs=89.9
Q ss_pred ceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~ 464 (583)
++=-.+........++....++.+|||+|++||||-.+++++-+-- ...+-..+.+||.+--. .++|+.+-...
T Consensus 225 iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S-~R~~kPfV~~NCAAlPe-----sLlESELFGHe 298 (550)
T COG3604 225 IIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS-PRRDKPFVKLNCAALPE-----SLLESELFGHE 298 (550)
T ss_pred ceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC-cccCCCceeeeccccch-----HHHHHHHhccc
Confidence 3434455566677788889999999999999999999999876533 34456788999988432 46788886666
Q ss_pred Ccccc-C---CCCC-----eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC
Q psy17974 465 KTLLG-A---PLGK-----RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP 532 (583)
Q Consensus 465 ~~~~~-p---~~gk-----~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~ 532 (583)
||.|. + ..|| ...+|+|||.--+.. -| --+||-+-+ |-+ .+-..+-..-.|+++|||+|..
T Consensus 299 KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~---lQ--aKLLRvLQe-gEi-eRvG~~r~ikVDVRiIAATNRD 368 (550)
T COG3604 299 KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA---LQ--AKLLRVLQE-GEI-ERVGGDRTIKVDVRVIAATNRD 368 (550)
T ss_pred ccccccchhccCcceeecCCCeEechhhccCCHH---HH--HHHHHHHhh-cce-eecCCCceeEEEEEEEeccchh
Confidence 66653 2 2333 457899999632221 01 247887766 333 2222222223599999999975
No 215
>PRK12377 putative replication protein; Provisional
Probab=97.74 E-value=4.7e-05 Score=76.94 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=56.6
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc--CccccCCCCCeE
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT--KTLLGAPLGKRL 476 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~--~~~~~p~~gk~~ 476 (583)
.+.+.....+++|+||||||||+++.++++.+. ..++.+..++.+ .+...+........ ...+. .-.+.-
T Consensus 94 a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~~~------~l~~~l~~~~~~~~~~~~~l~-~l~~~d 165 (248)
T PRK12377 94 ADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVTVP------DVMSRLHESYDNGQSGEKFLQ-ELCKVD 165 (248)
T ss_pred HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEHH------HHHHHHHHHHhccchHHHHHH-HhcCCC
Confidence 344444557899999999999999999998874 335556555332 23322222211100 00000 112334
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
+++|||+.+-.... ...+.|-+++++.
T Consensus 166 LLiIDDlg~~~~s~----~~~~~l~~ii~~R 192 (248)
T PRK12377 166 LLVLDEIGIQRETK----NEQVVLNQIIDRR 192 (248)
T ss_pred EEEEcCCCCCCCCH----HHHHHHHHHHHHH
Confidence 88999998754333 3456777787754
No 216
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.70 E-value=0.00019 Score=80.93 Aligned_cols=141 Identities=11% Similarity=0.004 Sum_probs=94.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH--HhhhhhhcCccccCC---CCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL--EGKLDKRTKTLLGAP---LGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i--e~~l~~~~~~~~~p~---~gk~~vlfiDD 482 (583)
.|+|.|+.|+|||++++.+..-++ ....++.++.+ .|.+.+...+ +..+.. .+.++.|- ...+.|+|+||
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp--~~~p~r~~p~~--~t~~~L~Gg~Dl~~~l~~-g~~~~~pGlla~Ah~GvL~lDe 101 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLP--AGTPLRRLPPG--IADDRLLGGLDLAATLRA-GRPVAQRGLLAEADGGVLVLAM 101 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcC--CCCCcccCCCC--CcHHHccCCchHHhHhhc-CCcCCCCCceeeccCCEEEecC
Confidence 699999999999999998877653 22233333333 3433333221 122221 11123221 23456999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHHHH
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDTL 560 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~sl 560 (583)
+|..... +++.|||.++.|... .+.........++.+||+.++.. ....+++.++-||. .+.+++|+..+.
T Consensus 102 ~n~~~~~------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~-~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 102 AERLEPG------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE-EDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred cccCCHH------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh-cccCCCHHhHhheEEEEEcCCCChHHh
Confidence 9997664 799999999988665 35566777778999999855432 22579999999997 589998887654
No 217
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00035 Score=73.54 Aligned_cols=131 Identities=18% Similarity=0.286 Sum_probs=81.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhccc--C-----------------Cc-eEEEEEe---ccCCChHHHHHHHHhhhhhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLAS--N-----------------TW-AALTINF---SAQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~--~-----------------~~-~~~~i~f---S~~Tt~~~lq~~ie~~l~~~ 463 (583)
+..|++||+|+|||+++..+++.+.-. . .+ .+..+.- +...+.+++.+++ ..+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~-~~~~-- 99 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELV-SFVV-- 99 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHH-HHHh--
Confidence 468999999999999999998876210 0 00 1111211 1123344554432 2222
Q ss_pred cCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhh
Q psy17974 464 TKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRF 543 (583)
Q Consensus 464 ~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rl 543 (583)
+.|..|++-|++||+.+.-..+ ....+|+-+=|- ..++.||.+++.+. .+.|-+
T Consensus 100 ----~~~~~~~~kv~iI~~a~~m~~~-----aaNaLLK~LEEP-------------p~~~~fiL~t~~~~----~ll~TI 153 (328)
T PRK05707 100 ----QTAQLGGRKVVLIEPAEAMNRN-----AANALLKSLEEP-------------SGDTVLLLISHQPS----RLLPTI 153 (328)
T ss_pred ----hccccCCCeEEEECChhhCCHH-----HHHHHHHHHhCC-------------CCCeEEEEEECChh----hCcHHH
Confidence 2344445556778998875544 356677644321 13566777666655 689999
Q ss_pred hccceEEEeCCCCHHHHHHHHHH
Q psy17974 544 VRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 544 lr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
.+|+.++.++.|+.+++......
T Consensus 154 ~SRc~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 154 KSRCQQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred HhhceeeeCCCcCHHHHHHHHHH
Confidence 99999999999999988766654
No 218
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.69 E-value=0.00013 Score=80.47 Aligned_cols=147 Identities=17% Similarity=0.219 Sum_probs=92.9
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC-----CChHHHHHHHHh------hhhh--
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ-----TSSARTQEILEG------KLDK-- 462 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~-----Tt~~~lq~~ie~------~l~~-- 462 (583)
+...+..+ +.-|++||.|+|||++++-+++.+.-... ...-.|... .+.....++||- .++.
T Consensus 28 L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR 105 (515)
T COG2812 28 LSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIR 105 (515)
T ss_pred HHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHH
Confidence 44445554 46799999999999999999887721110 000011111 011111112221 0111
Q ss_pred --hcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCC
Q psy17974 463 --RTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLT 540 (583)
Q Consensus 463 --~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~ 540 (583)
+.+-.|.|..++.=|+.|||+||-.... -..+|..+=| ..+.+.||-|++.|. .++
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~~a-----fNALLKTLEE-------------PP~hV~FIlATTe~~----Kip 163 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSKQA-----FNALLKTLEE-------------PPSHVKFILATTEPQ----KIP 163 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHhhhHHH-----HHHHhccccc-------------CccCeEEEEecCCcC----cCc
Confidence 1223567888888899999999987654 3446655432 134677887777665 789
Q ss_pred hhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 541 PRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 541 ~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+-.++|+..+.+-..+.+.+..-...++.
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~ 192 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILD 192 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998887777765
No 219
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.68 E-value=0.00025 Score=76.10 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=56.3
Q ss_pred CeEEEEecCCCCCCccc---------CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 474 KRLAVFVDDVNMPKLET---------YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~---------yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
...||||||++--.... -|.|. +|| -++| |.--+.+ ..-+.-.++.|||+-.=....-..+-|-|.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~--~LL-ki~E-G~~v~~k-~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~ 323 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQR--DLL-PLVE-GSTVSTK-YGMVKTDHILFIASGAFHVSKPSDLIPELQ 323 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhc--ccc-cccc-cceeeec-ceeEECCceeEEecCCcCCCChhhccHHHh
Confidence 46799999998633221 22332 122 2233 2222221 122344689999864311111235789999
Q ss_pred ccce-EEEeCCCCHHHHHHHH----HHHhcccc
Q psy17974 545 RHFG-LLSLPSPTEDTLKVIF----KVRTSPGK 572 (583)
Q Consensus 545 r~f~-vi~i~~p~~~sl~~I~----~~~l~~~l 572 (583)
-||. ++.+.+++.++|.+|. +++++++-
T Consensus 324 GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~ 356 (443)
T PRK05201 324 GRFPIRVELDALTEEDFVRILTEPKASLIKQYQ 356 (443)
T ss_pred CccceEEECCCCCHHHHHHHhcCChhHHHHHHH
Confidence 9998 5889999999999999 66776553
No 220
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.67 E-value=3e-05 Score=87.76 Aligned_cols=165 Identities=14% Similarity=0.181 Sum_probs=96.9
Q ss_pred chhhhHHHHHHHH------------HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh-HHHHHHH
Q psy17974 390 IDTIRFGSIMEKL------------LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS-ARTQEIL 456 (583)
Q Consensus 390 ~dt~r~~~ll~~~------------l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~-~~lq~~i 456 (583)
.+.++-.-+++++ +....||||+|.||+|||.+.+.+.+..+ .. ++. |..+++ ..+-.
T Consensus 291 ~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-r~----vyt--sgkgss~~GLTA-- 361 (682)
T COG1241 291 HEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-RG----VYT--SGKGSSAAGLTA-- 361 (682)
T ss_pred cHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-ce----EEE--ccccccccCcee--
Confidence 3456666555554 22346999999999999999998887552 21 111 222211 11110
Q ss_pred Hhhhhh-hc-CccccCC----CCCeEEEEecCCC-CCCcccCCCCChHHHHHHH---HHhCCeeecCCCeeEeecCeEEE
Q psy17974 457 EGKLDK-RT-KTLLGAP----LGKRLAVFVDDVN-MPKLETYGAQPPIELLRQF---LDFGGLYDRDKMFWKTLQDVVLC 526 (583)
Q Consensus 457 e~~l~~-~~-~~~~~p~----~gk~~vlfiDDln-~p~~d~yg~q~~lElLRq~---ld~~g~yd~~~~~~~~i~~i~~i 526 (583)
.+.+ .. +..+-.. ...+.|+.|||++ |+..|. ...+|.+.|- +...|.-. .--.++.++
T Consensus 362 --av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr---~aihEaMEQQtIsIaKAGI~a------tLnARcsvL 430 (682)
T COG1241 362 --AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR---VAIHEAMEQQTISIAKAGITA------TLNARCSVL 430 (682)
T ss_pred --EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH---HHHHHHHHhcEeeecccceee------ecchhhhhh
Confidence 0111 01 1111111 1234588899999 676663 2244555441 22223211 112578899
Q ss_pred EecCCCCC---------CCCCCChhhhccceE--EEeCCCCHHHHHHHHHHHhcccccC
Q psy17974 527 TACAPPGG---------GRMPLTPRFVRHFGL--LSLPSPTEDTLKVIFKVRTSPGKQE 574 (583)
Q Consensus 527 aa~~p~~~---------gr~~l~~Rllr~f~v--i~i~~p~~~sl~~I~~~~l~~~l~~ 574 (583)
||+||..| ..-.+++.|++||-+ +..+.|+.+.-..|...++..|...
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~ 489 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGE 489 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcc
Confidence 99999865 124578899999985 4568888888888888888888643
No 221
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.65 E-value=0.00051 Score=75.47 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=97.9
Q ss_pred CchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 389 TIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 389 T~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
.+........+..+...+.||++.|++||||+++++.+.... ......++.++|+... ... +++.+-...++.+
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~~~i~c~~~~-~~~----~~~~lfg~~~~~~ 222 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS-RRAKGPFIKVNCAALP-ESL----LESELFGHEKGAF 222 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC-CCCCCCeEEEECCCCC-HHH----HHHHhcCCCCCCC
Confidence 333444555667777788999999999999999999886643 2234467778887743 223 2333321111111
Q ss_pred -cC--------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CC
Q psy17974 469 -GA--------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GR 536 (583)
Q Consensus 469 -~p--------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr 536 (583)
|. ......++|+||++....+ ...-|.++++.+.+....... ..-.|+.+|+|++.+-. ..
T Consensus 223 ~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~------~q~~L~~~l~~~~~~~~~~~~-~~~~~~rii~~t~~~l~~~~~~ 295 (457)
T PRK11361 223 TGAQTLRQGLFERANEGTLLLDEIGEMPLV------LQAKLLRILQEREFERIGGHQ-TIKVDIRIIAATNRDLQAMVKE 295 (457)
T ss_pred CCCCCCCCCceEECCCCEEEEechhhCCHH------HHHHHHHHHhcCcEEeCCCCc-eeeeceEEEEeCCCCHHHHHHc
Confidence 00 0122457999999876654 234555677766554322211 12347899999886521 12
Q ss_pred CCCChhhhccceEEEeC--CCC--HHHHHHHHHHHhccc
Q psy17974 537 MPLTPRFVRHFGLLSLP--SPT--EDTLKVIFKVRTSPG 571 (583)
Q Consensus 537 ~~l~~Rllr~f~vi~i~--~p~--~~sl~~I~~~~l~~~ 571 (583)
..+.+.+..+++++.+. +.. .+++..+...++..+
T Consensus 296 g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~ 334 (457)
T PRK11361 296 GTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKF 334 (457)
T ss_pred CCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHH
Confidence 24556676666654444 433 245555555555543
No 222
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.64 E-value=0.00073 Score=74.40 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc-cC-
Q psy17974 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL-GA- 470 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~-~p- 470 (583)
......+..+.....++++.|++||||+++++.+.... .......+.++|+.. +.+.+.. .+-...++.| +.
T Consensus 144 ~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~-~~~~~~~~~~~c~~~-~~~~~~~----~lfg~~~~~~~~~~ 217 (463)
T TIGR01818 144 QEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS-PRANGPFIALNMAAI-PKDLIES----ELFGHEKGAFTGAN 217 (463)
T ss_pred HHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC-CCCCCCeEEEeCCCC-CHHHHHH----HhcCCCCCCCCCcc
Confidence 33334445566778899999999999999988876643 233456778888775 3333333 2211122221 11
Q ss_pred -------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCCCCC
Q psy17974 471 -------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRMPLT 540 (583)
Q Consensus 471 -------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~~l~ 540 (583)
......++||||++.-..+ .-.-|.++++.+.+....... ..-.|+.+|+|++.+-. ....+.
T Consensus 218 ~~~~g~~~~a~~gtl~l~ei~~l~~~------~q~~ll~~l~~~~~~~~~~~~-~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (463)
T TIGR01818 218 TRRQGRFEQADGGTLFLDEIGDMPLD------AQTRLLRVLADGEFYRVGGRT-PIKVDVRIVAATHQNLEALVRQGKFR 290 (463)
T ss_pred cCCCCcEEECCCCeEEEEchhhCCHH------HHHHHHHHHhcCcEEECCCCc-eeeeeeEEEEeCCCCHHHHHHcCCcH
Confidence 0112457899999865544 234445566656554322211 11237889999876521 122455
Q ss_pred hhhhccce--EEEeCCCC--HHHHHHHHHHHhccc
Q psy17974 541 PRFVRHFG--LLSLPSPT--EDTLKVIFKVRTSPG 571 (583)
Q Consensus 541 ~Rllr~f~--vi~i~~p~--~~sl~~I~~~~l~~~ 571 (583)
+.|..+++ .|.+|+.. .+++..+...++..+
T Consensus 291 ~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~ 325 (463)
T TIGR01818 291 EDLFHRLNVIRIHLPPLRERREDIPRLARHFLALA 325 (463)
T ss_pred HHHHHHhCcceecCCCcccchhhHHHHHHHHHHHH
Confidence 56666665 56666665 577888877777654
No 223
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.62 E-value=0.00029 Score=71.89 Aligned_cols=94 Identities=21% Similarity=0.275 Sum_probs=79.2
Q ss_pred eeeecccccEEEEecCC-CCCCCCCchHHHhcccceeeecCCcchhHHHHhhcccccchHHHHHHHHHHHHHHHhhCCCC
Q psy17974 138 MINLVPSCAAFITMNPG-YAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQ 216 (583)
Q Consensus 138 ~I~L~~~~~ifiTmnp~-y~gr~eLP~nlk~lfr~~~m~~pd~~~I~e~~l~~~gf~~a~~l~~k~~~~~~~~~~~ls~q 216 (583)
.+.++|++.|++|+||. |+|..++|+.|+..|..+.|-.||...-.+|.-- .|.-+..++++++.++...+ +.+
T Consensus 145 ~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~--~~~~~~~~~~~iv~~~~~~R---~~~ 219 (262)
T TIGR02640 145 YVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRA--KTDVAEDSAATIVRLVREFR---ASG 219 (262)
T ss_pred eEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHH---hhC
Confidence 46688999999999985 9999999999999999999999998777776554 35568899999999998887 456
Q ss_pred ccccccchhHHHHHHHhhhh
Q psy17974 217 DHYDFGMRAVKSVLVMAGSL 236 (583)
Q Consensus 217 ~hydfglR~lk~vl~~a~~~ 236 (583)
.++..|.|+...+.+.+..+
T Consensus 220 ~~~~~~~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 220 DEITSGLRASLMIAEVATQQ 239 (262)
T ss_pred CccCCcHHHHHHHHHHHHHc
Confidence 78899999998888776655
No 224
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.62 E-value=0.00031 Score=75.34 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=56.0
Q ss_pred CeEEEEecCCCCCCc-------cc--CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 474 KRLAVFVDDVNMPKL-------ET--YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 474 k~~vlfiDDln~p~~-------d~--yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
.+.||||||++--.. |. -|.|. +|| -++| |.--+.+. .-+.-.++.|||+-.=.+.....+-|-|.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~--~LL-kilE-Gt~v~~k~-~~v~T~~ILFI~~GAF~~~kp~DlIPEl~ 321 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQR--DLL-PIVE-GSTVNTKY-GMVKTDHILFIAAGAFQLAKPSDLIPELQ 321 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhc--ccc-cccc-Cceeeecc-eeEECCceeEEecCCcCCCChhhccHHHh
Confidence 567999999986332 11 23332 222 2333 22222221 22344689999874321111235788999
Q ss_pred ccce-EEEeCCCCHHHHHHHH----HHHhccc
Q psy17974 545 RHFG-LLSLPSPTEDTLKVIF----KVRTSPG 571 (583)
Q Consensus 545 r~f~-vi~i~~p~~~sl~~I~----~~~l~~~ 571 (583)
-||. ++.+.+++.++|.+|. +++++++
T Consensus 322 GR~Pi~v~L~~L~~edL~rILteP~nsLikQy 353 (441)
T TIGR00390 322 GRFPIRVELQALTTDDFERILTEPKNSLIKQY 353 (441)
T ss_pred CccceEEECCCCCHHHHHHHhcCChhHHHHHH
Confidence 9997 5889999999999998 5665544
No 225
>PRK15115 response regulator GlrR; Provisional
Probab=97.62 E-value=0.00049 Score=75.38 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-C-
Q psy17974 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-A- 470 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p- 470 (583)
.+....+..+...+.+|++.|++||||+++++.+.... .......+.++|+..+. .. +++.+-...++.|. +
T Consensus 144 ~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s-~r~~~~f~~i~c~~~~~-~~----~~~~lfg~~~~~~~~~~ 217 (444)
T PRK15115 144 LRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS-PRASKPFIAINCGALPE-QL----LESELFGHARGAFTGAV 217 (444)
T ss_pred HHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc-CCCCCCeEEEeCCCCCH-HH----HHHHhcCCCcCCCCCCc
Confidence 33344445556677899999999999999999876643 22345678888877532 22 33333211122221 0
Q ss_pred -------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC---CCCCCCC
Q psy17974 471 -------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG---GGRMPLT 540 (583)
Q Consensus 471 -------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~---~gr~~l~ 540 (583)
......++||||++.-..+ .-+.|-.+++.+.+.. -......-.|+.+|+|++.+- -.+..+.
T Consensus 218 ~~~~g~~~~a~~gtl~l~~i~~l~~~------~q~~L~~~l~~~~~~~-~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 218 SNREGLFQAAEGGTLFLDEIGDMPAP------LQVKLLRVLQERKVRP-LGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred cCCCCcEEECCCCEEEEEccccCCHH------HHHHHHHHHhhCCEEe-CCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 0122348999999865543 2345556677665532 222222334899999987642 1233567
Q ss_pred hhhhccceEEEeCCCCH----HHHHHHHHHHhccc
Q psy17974 541 PRFVRHFGLLSLPSPTE----DTLKVIFKVRTSPG 571 (583)
Q Consensus 541 ~Rllr~f~vi~i~~p~~----~sl~~I~~~~l~~~ 571 (583)
+.+..+++++.+.-|.- +++..+...++..+
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~ 325 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQA 325 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHH
Confidence 78888887655555532 45666666666543
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.61 E-value=0.00043 Score=73.07 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=37.4
Q ss_pred cCeEEEEecCCCC-CCC--CCCChhhhccceEEEeCCCCH-HHHHHHHHHHhcc
Q psy17974 521 QDVVLCTACAPPG-GGR--MPLTPRFVRHFGLLSLPSPTE-DTLKVIFKVRTSP 570 (583)
Q Consensus 521 ~~i~~iaa~~p~~-~gr--~~l~~Rllr~f~vi~i~~p~~-~sl~~I~~~~l~~ 570 (583)
-|..+||++|+.. ..+ ......|++|+.++.+++|.. +.=..||...+..
T Consensus 276 ~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~ 329 (361)
T smart00763 276 IDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRN 329 (361)
T ss_pred cceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhcc
Confidence 4567889999874 111 234799999999999999966 4555699988874
No 227
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0014 Score=69.97 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=52.1
Q ss_pred cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce
Q psy17974 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG 548 (583)
Q Consensus 469 ~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~ 548 (583)
.|..+.+-|++|||++.-..+ ....+|+. ++.- ..++.||.+++.++ .+.+-+.+++.
T Consensus 136 ~~~~~~~kVviIDead~m~~~-----aanaLLK~-LEep------------p~~~~~IL~t~~~~----~llpti~SRc~ 193 (365)
T PRK07471 136 TAAEGGWRVVIVDTADEMNAN-----AANALLKV-LEEP------------PARSLFLLVSHAPA----RLLPTIRSRCR 193 (365)
T ss_pred CcccCCCEEEEEechHhcCHH-----HHHHHHHH-HhcC------------CCCeEEEEEECCch----hchHHhhccce
Confidence 455677779999998865433 23444443 3311 12445555555554 46778899999
Q ss_pred EEEeCCCCHHHHHHHHHHH
Q psy17974 549 LLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~ 567 (583)
.+.++.|+.+++..+....
T Consensus 194 ~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 194 KLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred EEECCCCCHHHHHHHHHHh
Confidence 9999999999998887764
No 228
>PRK06921 hypothetical protein; Provisional
Probab=97.57 E-value=0.00023 Score=72.79 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=30.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
.+.+++|+||+|+|||.++.++++.+....++.+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 467899999999999999999999874322566666654
No 229
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.55 E-value=0.00065 Score=69.61 Aligned_cols=150 Identities=20% Similarity=0.219 Sum_probs=85.0
Q ss_pred HHHHHHHh---cCCceEEEccCCCcHHHHHHHHHHhhcccCCc-eEEEEEeccCCChHHHHHHHHhhhhhhcCcc-c---
Q psy17974 397 SIMEKLLL---VNHPVMFTGVTGVGKTVVARSILNKLLASNTW-AALTINFSAQTSSARTQEILEGKLDKRTKTL-L--- 468 (583)
Q Consensus 397 ~ll~~~l~---~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~-~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~-~--- 468 (583)
.+.+.+.. ..+-|.|+|++|+|||+++..+++.......| .++.++++...+...+...|-..+....... .
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 86 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKD 86 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSS
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455555 45678999999999999999998762212333 3456778777776666665655554432211 0
Q ss_pred ---------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCC
Q psy17974 469 ---------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPL 539 (583)
Q Consensus 469 ---------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l 539 (583)
.--.++++++++||+.-+. .++-++..+- . .-.+..+|.|+... .+
T Consensus 87 ~~~~~~~l~~~L~~~~~LlVlDdv~~~~--------~~~~l~~~~~------~------~~~~~kilvTTR~~-----~v 141 (287)
T PF00931_consen 87 IEELQDQLRELLKDKRCLLVLDDVWDEE--------DLEELREPLP------S------FSSGSKILVTTRDR-----SV 141 (287)
T ss_dssp HHHHHHHHHHHHCCTSEEEEEEEE-SHH--------HH-------H------C------HHSS-EEEEEESCG-----GG
T ss_pred cccccccchhhhccccceeeeeeecccc--------cccccccccc------c------cccccccccccccc-----cc
Confidence 0114568999999986432 1222222111 0 01245677776543 23
Q ss_pred ChhhhccceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 540 TPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 540 ~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.........++.++..+.++-...|.......
T Consensus 142 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 142 AGSLGGTDKVIELEPLSEEEALELFKKRAGRK 173 (287)
T ss_dssp GTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33333336789999999999889988886543
No 230
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.52 E-value=0.00017 Score=73.75 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=97.9
Q ss_pred CchhhhHH-HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc
Q psy17974 389 TIDTIRFG-SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTL 467 (583)
Q Consensus 389 T~dt~r~~-~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~ 467 (583)
-.|.+... .+.+.+-..+.+.||+|.+||||+++++-.+. + .++.+..+..+...+-.++.+-+..-+.+ .+
T Consensus 13 f~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~-i---~~~~~~~i~~~~~y~~~~f~~dLk~~~~~-ag-- 85 (268)
T PF12780_consen 13 FDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAF-I---CGYEVFQIEITKGYSIKDFKEDLKKALQK-AG-- 85 (268)
T ss_dssp -HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHH-H---TTEEEE-TTTSTTTHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHH-H---hccceEEEEeeCCcCHHHHHHHHHHHHHH-Hh--
Confidence 34444443 33333445577999999999999999884333 2 24566666655544444444333333322 11
Q ss_pred ccCCCCCeEEEEecCCCCCCcc---------cCCCC----------ChHHHHHHHHHhCCeeecCCCee----Ee-ecCe
Q psy17974 468 LGAPLGKRLAVFVDDVNMPKLE---------TYGAQ----------PPIELLRQFLDFGGLYDRDKMFW----KT-LQDV 523 (583)
Q Consensus 468 ~~p~~gk~~vlfiDDln~p~~d---------~yg~q----------~~lElLRq~ld~~g~yd~~~~~~----~~-i~~i 523 (583)
..|++.+++++|-+..... ..|.- ..++-+|+.....|.-+....-| .. -++.
T Consensus 86 ---~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nL 162 (268)
T PF12780_consen 86 ---IKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNL 162 (268)
T ss_dssp ---CS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCE
T ss_pred ---ccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhhe
Confidence 2467889999997765421 01111 12344444444444322111101 11 2578
Q ss_pred EEEEecCCCCCC-C--CCCChhhhccceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 524 VLCTACAPPGGG-R--MPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 524 ~~iaa~~p~~~g-r--~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.+|-++.|.|.- | -.-.|.+.+.+.+.++..-++++|..|-..+++..
T Consensus 163 Hivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 163 HIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp EEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCHH
T ss_pred eEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHhh
Confidence 999999987642 2 23456778889999999999999999999888754
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.52 E-value=0.00013 Score=76.20 Aligned_cols=91 Identities=15% Similarity=0.292 Sum_probs=51.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh-hhhhhcCccccCCCCCeEEEEecCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG-KLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~-~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+++++|+||+|||||.++.++++.+. ..++.+..++++.- ...+...+.. .+.+.... -.+--+++|||+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~~l--~~~lk~~~~~~~~~~~l~~-----l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFPEF--IRELKNSISDGSVKEKIDA-----VKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHHHH--HHHHHHHHhcCcHHHHHHH-----hcCCCEEEEecC
Confidence 457999999999999999999999874 34666766655321 1112111110 01110000 122337899999
Q ss_pred CCCCcccCCCCChHHHHHHHHHh
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDF 506 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~ 506 (583)
..-....|+. -++|-.++++
T Consensus 227 G~e~~s~~~~---~~ll~~Il~~ 246 (306)
T PRK08939 227 GAEQMSSWVR---DEVLGVILQY 246 (306)
T ss_pred CCccccHHHH---HHHHHHHHHH
Confidence 8755443332 2455555553
No 232
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0019 Score=67.63 Aligned_cols=140 Identities=12% Similarity=0.261 Sum_probs=81.3
Q ss_pred HHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhccc---CCc-eEEEEEe--ccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 399 MEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLAS---NTW-AALTINF--SAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 399 l~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~---~~~-~~~~i~f--S~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
+...+..| +..|++||+|+|||++++.+++.+.-. ..+ .+..+.- ....+.+++.+.++ .+. ..
T Consensus 16 l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~-~~~------~~ 88 (313)
T PRK05564 16 IKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIE-EVN------KK 88 (313)
T ss_pred HHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHH-HHh------cC
Confidence 44445544 355999999999999999998865211 111 1212211 12233445444432 111 23
Q ss_pred CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 470 APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
|-.+++-|++|||.+.-..+ ....+| -.+|. + ..++.+|-+++.+. .+.+.+.+|+.+
T Consensus 89 p~~~~~kv~iI~~ad~m~~~-----a~naLL-K~LEe-----p-------p~~t~~il~~~~~~----~ll~TI~SRc~~ 146 (313)
T PRK05564 89 PYEGDKKVIIIYNSEKMTEQ-----AQNAFL-KTIEE-----P-------PKGVFIILLCENLE----QILDTIKSRCQI 146 (313)
T ss_pred cccCCceEEEEechhhcCHH-----HHHHHH-HHhcC-----C-------CCCeEEEEEeCChH----hCcHHHHhhcee
Confidence 44456668889997554332 123344 33331 1 12445554444443 688899999999
Q ss_pred EEeCCCCHHHHHHHHHHH
Q psy17974 550 LSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~ 567 (583)
+.++.|+.+++.......
T Consensus 147 ~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYK 164 (313)
T ss_pred eeCCCcCHHHHHHHHHHH
Confidence 999999999987766543
No 233
>KOG0741|consensus
Probab=97.48 E-value=0.0001 Score=79.54 Aligned_cols=148 Identities=19% Similarity=0.302 Sum_probs=81.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe----ccC--CChHHHHHHHH-hhhhhhcCccccCCCCCe
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF----SAQ--TSSARTQEILE-GKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f----S~~--Tt~~~lq~~ie-~~l~~~~~~~~~p~~gk~ 475 (583)
+.+=+.+||+||||||||.+++++=+-+.-++ ...+|- +.. -+-+.+.++.- ..-++|+. |+..|-.
T Consensus 253 i~HVKGiLLyGPPGTGKTLiARqIGkMLNAre---PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~---g~~SgLH 326 (744)
T KOG0741|consen 253 IKHVKGILLYGPPGTGKTLIARQIGKMLNARE---PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL---GANSGLH 326 (744)
T ss_pred ccceeeEEEECCCCCChhHHHHHHHHHhcCCC---CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh---CccCCce
Confidence 44457899999999999999998744331111 111111 000 01122222211 11122322 3444444
Q ss_pred EEEEecCCCCCCccc---CCCCCh-HHHHHHHHHhC-CeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce
Q psy17974 476 LAVFVDDVNMPKLET---YGAQPP-IELLRQFLDFG-GLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG 548 (583)
Q Consensus 476 ~vlfiDDln~p~~d~---yg~q~~-lElLRq~ld~~-g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~ 548 (583)
|+.+|||+.-=+.. -|...+ =....|++..- |. -.+.|+.+|+-+|... -|+.+|+| ||-
T Consensus 327 -IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV--------eqLNNILVIGMTNR~D----lIDEALLRPGRlE 393 (744)
T KOG0741|consen 327 -IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV--------EQLNNILVIGMTNRKD----LIDEALLRPGRLE 393 (744)
T ss_pred -EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH--------HhhhcEEEEeccCchh----hHHHHhcCCCceE
Confidence 55669998521111 121112 23566666532 21 2367899999877654 68899998 555
Q ss_pred E-EEeCCCCHHHHHHHHHHHhc
Q psy17974 549 L-LSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 549 v-i~i~~p~~~sl~~I~~~~l~ 569 (583)
| +-+..|++....+||.-+-.
T Consensus 394 VqmEIsLPDE~gRlQIl~IHT~ 415 (744)
T KOG0741|consen 394 VQMEISLPDEKGRLQILKIHTK 415 (744)
T ss_pred EEEEEeCCCccCceEEEEhhhh
Confidence 4 67778999887777765544
No 234
>KOG0745|consensus
Probab=97.45 E-value=7.9e-05 Score=78.81 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=47.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCc-cccCCCCCeEEEEecCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT-LLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~-~~~p~~gk~~vlfiDDl 483 (583)
.+.||||.||+|||||.+++.+++-+ +...+.-.|...|.+..+-+=+|+-+.|--.. -|--...++.|+|+||+
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 46799999999999999999999876 33444445555555443332223222221000 01112345679999999
Q ss_pred CCCC
Q psy17974 484 NMPK 487 (583)
Q Consensus 484 n~p~ 487 (583)
+--.
T Consensus 301 DKi~ 304 (564)
T KOG0745|consen 301 DKIT 304 (564)
T ss_pred hhhc
Confidence 8643
No 235
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.43 E-value=0.00042 Score=69.88 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=52.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC---ccccCCCCCeEEEEecCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK---TLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~---~~~~p~~gk~~vlfiDDl 483 (583)
.+++|+|++|||||+++.+++..+. ..+..+..++ ..++...+......... ..+.. -.+.-+++|||+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~-~~g~~v~~it------~~~l~~~l~~~~~~~~~~~~~~l~~-l~~~dlLvIDDi 171 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL-LRGKSVLIIT------VADIMSAMKDTFSNSETSEEQLLND-LSNVDLLVIDEI 171 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE------HHHHHHHHHHHHhhccccHHHHHHH-hccCCEEEEeCC
Confidence 5899999999999999999998874 3345555553 23333333222110000 00100 112347899999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhC
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
....... --.++|-+++++.
T Consensus 172 g~~~~s~----~~~~~l~~Ii~~R 191 (244)
T PRK07952 172 GVQTESR----YEKVIINQIVDRR 191 (244)
T ss_pred CCCCCCH----HHHHHHHHHHHHH
Confidence 8754322 2346788888864
No 236
>KOG0990|consensus
Probab=97.37 E-value=0.00021 Score=73.20 Aligned_cols=140 Identities=14% Similarity=0.136 Sum_probs=89.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCc--eEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTW--AALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~--~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
.+.|++||||+|||+.+.+.++.+....++ .+.-+|-|+.-..+-++..+...-..+....|....+-+ .+.+||.+
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fK-lvILDEAD 141 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFK-LVILDEAD 141 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCcee-EEEecchh
Confidence 489999999999999999998887432222 233455555544444444443332323333443322334 45689988
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHH
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIF 564 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~ 564 (583)
.-..| +-..||+.++.- -.++.|+--||+|. .+.|.++.+|.-+...+.+......+.
T Consensus 142 aMT~~------AQnALRRviek~------------t~n~rF~ii~n~~~----ki~pa~qsRctrfrf~pl~~~~~~~r~ 199 (360)
T KOG0990|consen 142 AMTRD------AQNALRRVIEKY------------TANTRFATISNPPQ----KIHPAQQSRCTRFRFAPLTMAQQTERQ 199 (360)
T ss_pred HhhHH------HHHHHHHHHHHh------------ccceEEEEeccChh----hcCchhhcccccCCCCCCChhhhhhHH
Confidence 76555 345677766521 24677777788886 678888888888888888877777666
Q ss_pred HHHhc
Q psy17974 565 KVRTS 569 (583)
Q Consensus 565 ~~~l~ 569 (583)
+.+.+
T Consensus 200 shi~e 204 (360)
T KOG0990|consen 200 SHIRE 204 (360)
T ss_pred HHHHh
Confidence 66554
No 237
>KOG0732|consensus
Probab=97.37 E-value=0.00046 Score=80.83 Aligned_cols=151 Identities=23% Similarity=0.347 Sum_probs=84.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc-cCCCCCeEEEEec
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL-GAPLGKRLAVFVD 481 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~-~p~~gk~~vlfiD 481 (583)
+..-+.||++||||||||..+++++......++ - +.|-..-.++-+-+-+ +..++.-+-.| .+...++.|+|.|
T Consensus 296 itpPrgvL~~GppGTGkTl~araLa~~~s~~~~--k--isffmrkgaD~lskwv-gEaERqlrllFeeA~k~qPSIIffd 370 (1080)
T KOG0732|consen 296 ITPPRGVLFHGPPGTGKTLMARALAAACSRGNR--K--ISFFMRKGADCLSKWV-GEAERQLRLLFEEAQKTQPSIIFFD 370 (1080)
T ss_pred cCCCcceeecCCCCCchhHHHHhhhhhhccccc--c--cchhhhcCchhhcccc-CcHHHHHHHHHHHHhccCceEEecc
Confidence 445678999999999999999999887632211 1 1111111111100000 00010000011 1234568899999
Q ss_pred CCCCCCccc--CCCC---ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeC
Q psy17974 482 DVNMPKLET--YGAQ---PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLP 553 (583)
Q Consensus 482 Dln~p~~d~--yg~q---~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~ 553 (583)
+|+-..+-. ...| ++...|=.++| |.=. -..+.+|||+|.|. .++|.+.| +| +.++++
T Consensus 371 eIdGlapvrSskqEqih~SIvSTLLaLmd--Glds--------RgqVvvigATnRpd----a~dpaLRRPgrfdref~f~ 436 (1080)
T KOG0732|consen 371 EIDGLAPVRSSKQEQIHASIVSTLLALMD--GLDS--------RGQVVVIGATNRPD----AIDPALRRPGRFDREFYFP 436 (1080)
T ss_pred ccccccccccchHHHhhhhHHHHHHHhcc--CCCC--------CCceEEEcccCCcc----ccchhhcCCcccceeEeee
Confidence 998322211 1111 12233334444 2111 13578999999876 67777755 44 578999
Q ss_pred CCCHHHHHHHHHHHhcccc
Q psy17974 554 SPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~l 572 (583)
.|+.+.-..|..-.-..|.
T Consensus 437 lp~~~ar~~Il~Ihtrkw~ 455 (1080)
T KOG0732|consen 437 LPDVDARAKILDIHTRKWE 455 (1080)
T ss_pred CCchHHHHHHHHHhccCCC
Confidence 9999999988877655543
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.36 E-value=0.0034 Score=59.32 Aligned_cols=131 Identities=19% Similarity=0.289 Sum_probs=73.2
Q ss_pred HHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccC-------------------CceEEEEEeccC---CChHH
Q psy17974 397 SIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASN-------------------TWAALTINFSAQ---TSSAR 451 (583)
Q Consensus 397 ~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~-------------------~~~~~~i~fS~~---Tt~~~ 451 (583)
..+..+++.+ +.+|++||+|+||++++..+++.+-... .-.+..+.-... ...++
T Consensus 7 ~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ 86 (162)
T PF13177_consen 7 ELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQ 86 (162)
T ss_dssp HHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHH
T ss_pred HHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHH
Confidence 3455556665 3579999999999999999988752111 111222222111 23344
Q ss_pred HHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCC
Q psy17974 452 TQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAP 531 (583)
Q Consensus 452 lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p 531 (583)
+.+++ ..+ ...|..+++=|++|||.+....+ +...|+-.+|.- ..++.||-+++.
T Consensus 87 ir~i~-~~~------~~~~~~~~~KviiI~~ad~l~~~------a~NaLLK~LEep------------p~~~~fiL~t~~ 141 (162)
T PF13177_consen 87 IREII-EFL------SLSPSEGKYKVIIIDEADKLTEE------AQNALLKTLEEP------------PENTYFILITNN 141 (162)
T ss_dssp HHHHH-HHC------TSS-TTSSSEEEEEETGGGS-HH------HHHHHHHHHHST------------TTTEEEEEEES-
T ss_pred HHHHH-HHH------HHHHhcCCceEEEeehHhhhhHH------HHHHHHHHhcCC------------CCCEEEEEEECC
Confidence 43322 111 12344455668889998876554 233444455522 235677777766
Q ss_pred CCCCCCCCChhhhccceEEEeCCCC
Q psy17974 532 PGGGRMPLTPRFVRHFGLLSLPSPT 556 (583)
Q Consensus 532 ~~~gr~~l~~Rllr~f~vi~i~~p~ 556 (583)
+. .|.+-+.+|+.++++++.|
T Consensus 142 ~~----~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 142 PS----KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GG----GS-HHHHTTSEEEEE----
T ss_pred hH----HChHHHHhhceEEecCCCC
Confidence 54 7999999999999998754
No 239
>KOG1051|consensus
Probab=97.35 E-value=0.00021 Score=82.82 Aligned_cols=113 Identities=18% Similarity=0.276 Sum_probs=76.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh---hhhhcCcccc-CCCCC-eEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK---LDKRTKTLLG-APLGK-RLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~---l~~~~~~~~~-p~~gk-~~vlfiDD 482 (583)
-+|++||+|+|||-++++++.-+.+ .+-.++.+.+|.... +-+.+.+. ..+..++.+. +-..+ ..||++||
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fg-se~~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfde 668 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFG-SEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEE 668 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcC-CccceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEec
Confidence 4799999999999999999988743 345678888887433 11222111 1111111111 11222 47999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCC
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAP 531 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p 531 (583)
|..+.++ +.-.|-|++|.|-.-|.+. .-+...|+.||.|+|-
T Consensus 669 IEkAh~~------v~n~llq~lD~GrltDs~G-r~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 669 IEKAHPD------VLNILLQLLDRGRLTDSHG-REVDFKNAIFIMTSNV 710 (898)
T ss_pred hhhcCHH------HHHHHHHHHhcCccccCCC-cEeeccceEEEEeccc
Confidence 9988765 6778889999998888654 4567889999998775
No 240
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.31 E-value=0.0029 Score=66.11 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC--------CCC---CCCC
Q psy17974 472 LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG--------GGR---MPLT 540 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~--------~gr---~~l~ 540 (583)
.++++|+||||++...++. ...+++.++.+++. .++.||-++++.. .|. ....
T Consensus 170 ~~~~iViiIDdLDR~~~~~--i~~~l~~ik~~~~~--------------~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~ 233 (325)
T PF07693_consen 170 SKKRIVIIIDDLDRCSPEE--IVELLEAIKLLLDF--------------PNIIFILAFDPEILEKAIEKNYGEGFDEIDG 233 (325)
T ss_pred CCceEEEEEcchhcCCcHH--HHHHHHHHHHhcCC--------------CCeEEEEEecHHHHHHHHHhhcCcccccccH
Confidence 4578999999999987763 22345556555552 5677787776541 011 2455
Q ss_pred hhhhccce--EEEeCCCCHHHHHHHHHHHhccccc
Q psy17974 541 PRFVRHFG--LLSLPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 541 ~Rllr~f~--vi~i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
..++..|- .+.+|.|+..++...+...++....
T Consensus 234 ~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~ 268 (325)
T PF07693_consen 234 REYLEKIIQVPFSLPPPSPSDLERYLNELLESLES 268 (325)
T ss_pred HHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence 67777763 5999999999999988888665543
No 241
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00026 Score=68.34 Aligned_cols=29 Identities=31% Similarity=0.674 Sum_probs=23.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceE
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAA 438 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~ 438 (583)
++|.|+||||||+.++.+++.+. .+.+.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~-~~i~~v 32 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR-QEIWRV 32 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH-Hhhhhc
Confidence 68999999999999999999884 334444
No 242
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.003 Score=66.87 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=54.3
Q ss_pred cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce
Q psy17974 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG 548 (583)
Q Consensus 469 ~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~ 548 (583)
.|..|++-|++|||.+.-..+ ....+|+-+=| + ..++.||.++..|+ .+.|-+.+|+.
T Consensus 127 ~~~~~~~kV~iI~~ae~m~~~-----AaNaLLKtLEE------P-------p~~t~fiL~t~~~~----~LLpTI~SRcq 184 (342)
T PRK06964 127 GTHRGGARVVVLYPAEALNVA-----AANALLKTLEE------P-------PPGTVFLLVSARID----RLLPTILSRCR 184 (342)
T ss_pred CCccCCceEEEEechhhcCHH-----HHHHHHHHhcC------C-------CcCcEEEEEECChh----hCcHHHHhcCE
Confidence 355566668889998765443 35667765432 1 24566777666655 78899999999
Q ss_pred EEEeCCCCHHHHHHHHHH
Q psy17974 549 LLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~ 566 (583)
.+.++.|+.+++......
T Consensus 185 ~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 185 QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEecCCCHHHHHHHHHH
Confidence 999999999988877654
No 243
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0041 Score=65.48 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=77.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhc--cc-CC------------------ceEEEEEeccC------------CChHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLL--AS-NT------------------WAALTINFSAQ------------TSSART 452 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~--~~-~~------------------~~~~~i~fS~~------------Tt~~~l 452 (583)
.+..|++||+|+|||++++.+++.+. .+ .. -.+..+ ++. .+.+++
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~--~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEI--TPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEE--ecccccccccccCCCcCHHHH
Confidence 45789999999999999999887652 11 00 112222 221 233444
Q ss_pred HHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC
Q psy17974 453 QEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP 532 (583)
Q Consensus 453 q~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~ 532 (583)
.+++ ..+. +.|..+++-|++||+++.-... ....+++ .++.. .+++.+|.++..+
T Consensus 99 R~l~-~~~~------~~p~~~~~kV~iiEp~~~Ld~~-----a~naLLk-~LEep------------~~~~~~Ilvth~~ 153 (325)
T PRK08699 99 REII-DNVY------LTSVRGGLRVILIHPAESMNLQ-----AANSLLK-VLEEP------------PPQVVFLLVSHAA 153 (325)
T ss_pred HHHH-HHHh------hCcccCCceEEEEechhhCCHH-----HHHHHHH-HHHhC------------cCCCEEEEEeCCh
Confidence 4432 2222 2344455557788998865443 2333444 55532 0234556555554
Q ss_pred CCCCCCCChhhhccceEEEeCCCCHHHHHHHHH
Q psy17974 533 GGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFK 565 (583)
Q Consensus 533 ~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~ 565 (583)
+ .+.+-+.+|+.++.++.|+.+.+..-..
T Consensus 154 ~----~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 154 D----KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred H----hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 4 6888899999999999999988765543
No 244
>KOG2227|consensus
Probab=97.26 E-value=0.0026 Score=68.37 Aligned_cols=155 Identities=20% Similarity=0.205 Sum_probs=91.8
Q ss_pred HHHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccC-CceEEEEEeccCCChHHHHHHHHhhh-h-hhcCccc--
Q psy17974 396 GSIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASN-TWAALTINFSAQTSSARTQEILEGKL-D-KRTKTLL-- 468 (583)
Q Consensus 396 ~~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~~i~fS~~Tt~~~lq~~ie~~l-~-~~~~~~~-- 468 (583)
..++...+.. +..+.++|.||+|||.+...++..+.... ....+.+|+.+-+++..+-..|-+.+ . ...++..
T Consensus 163 ~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~ 242 (529)
T KOG2227|consen 163 REFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQ 242 (529)
T ss_pred HHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHH
Confidence 3444444443 45889999999999999998887653222 23568899988777766444444444 2 2122111
Q ss_pred -----c-C-CCC-CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCC
Q psy17974 469 -----G-A-PLG-KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLT 540 (583)
Q Consensus 469 -----~-p-~~g-k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~ 540 (583)
. + ... ..+|+++||++--..- .| +-.|..-...|..-..+.+||-.|.- .++
T Consensus 243 ~~~~~~~h~~q~k~~~llVlDEmD~L~tr---~~------------~vLy~lFewp~lp~sr~iLiGiANsl-----DlT 302 (529)
T KOG2227|consen 243 HLEKFEKHTKQSKFMLLLVLDEMDHLITR---SQ------------TVLYTLFEWPKLPNSRIILIGIANSL-----DLT 302 (529)
T ss_pred HHHHHHHHHhcccceEEEEechhhHHhhc---cc------------ceeeeehhcccCCcceeeeeeehhhh-----hHH
Confidence 1 1 122 3678899998643211 11 12222211222333566777766543 456
Q ss_pred hhhhccc--------eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 541 PRFVRHF--------GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 541 ~Rllr~f--------~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.||+-+- .++++++.+.+++..|++.-+..
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 6664433 36999999999999999987763
No 245
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.26 E-value=0.0044 Score=67.73 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=95.4
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-C-------
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-A------- 470 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p------- 470 (583)
+..+...+.+|++.|++||||+++++.+-... .......+.++|++.+ .+.+ ++.+....++.+. .
T Consensus 155 i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s-~~~~~~~i~~~c~~~~-~~~~----~~~lfg~~~~~~~~~~~~~~g~ 228 (441)
T PRK10365 155 IALVAPSEATVLIHGDSGTGKELVARAIHASS-ARSEKPLVTLNCAALN-ESLL----ESELFGHEKGAFTGADKRREGR 228 (441)
T ss_pred HhhccCCCCeEEEEecCCCCHHHHHHHHHHcC-CCCCCCeeeeeCCCCC-HHHH----HHHhcCCCCCCcCCCCcCCCCc
Confidence 34455667899999999999999999876543 2334567888888643 3333 3333221222221 0
Q ss_pred -CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCCCCChhhhcc
Q psy17974 471 -PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRMPLTPRFVRH 546 (583)
Q Consensus 471 -~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~~l~~Rllr~ 546 (583)
......++|+||++.-..+ ....|-.+++.+.+........ .-.|+.+|+|++.+-. ....+.++|..+
T Consensus 229 ~~~a~~gtl~ldei~~l~~~------~q~~l~~~l~~~~~~~~~~~~~-~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 229 FVEADGGTLFLDEIGDISPM------MQVRLLRAIQEREVQRVGSNQT-ISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 (441)
T ss_pred eeECCCCEEEEeccccCCHH------HHHHHHHHHccCcEEeCCCCce-eeeceEEEEeCCCCHHHHHHcCCchHHHHHH
Confidence 1123567999999976554 2344455666665443322222 2247889988876521 223467888888
Q ss_pred ceEEEeCCCCH----HHHHHHHHHHhccc
Q psy17974 547 FGLLSLPSPTE----DTLKVIFKVRTSPG 571 (583)
Q Consensus 547 f~vi~i~~p~~----~sl~~I~~~~l~~~ 571 (583)
++.+.+.-|.- +++..+...++..+
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~ 330 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRF 330 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHH
Confidence 87766665533 35666666666644
No 246
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0031 Score=66.23 Aligned_cols=131 Identities=14% Similarity=0.195 Sum_probs=80.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhccc--CC-----------------c-eEEEEEe--ccCCChHHHHHHHHhhhhhhc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLAS--NT-----------------W-AALTINF--SAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~--~~-----------------~-~~~~i~f--S~~Tt~~~lq~~ie~~l~~~~ 464 (583)
+..|+.||+|+||+++++.+++.+.=. .. + .+..+.- +.....+++.++. ..+
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~-~~~---- 99 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREIN-EKV---- 99 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHH-HHH----
Confidence 577899999999999999988765210 00 0 0111211 1112233333321 111
Q ss_pred CccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 465 KTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 465 ~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
.+.|..|++=|++||+.+.-... ....+|+-+=| + ..++.||-++..+. .+.|-+.
T Consensus 100 --~~~~~~g~~KV~iI~~a~~m~~~-----AaNaLLKtLEE------P-------p~~~~fiL~t~~~~----~llpTI~ 155 (325)
T PRK06871 100 --SQHAQQGGNKVVYIQGAERLTEA-----AANALLKTLEE------P-------RPNTYFLLQADLSA----ALLPTIY 155 (325)
T ss_pred --hhccccCCceEEEEechhhhCHH-----HHHHHHHHhcC------C-------CCCeEEEEEECChH----hCchHHH
Confidence 23455566668889998765433 35566665433 1 23566666666554 6888999
Q ss_pred ccceEEEeCCCCHHHHHHHHHH
Q psy17974 545 RHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 545 r~f~vi~i~~p~~~sl~~I~~~ 566 (583)
+|+..+.+++|+.+.+......
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHH
Confidence 9999999999999988765544
No 247
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.24 E-value=0.00064 Score=72.47 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=73.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc--C----CCCCeEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG--A----PLGKRLAV 478 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~--p----~~gk~~vl 478 (583)
..+.+.|.||.|+|||+++..+...++.+ .-..++|+. +..-+-+.+.+.+++... . -.++--|+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~---~k~R~HFh~------Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lL 131 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIK---RKRRVHFHE------FMLDVHSRLHQLRGQDDPLPQVADELAKESRLL 131 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcc---ccccccccH------HHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEE
Confidence 46899999999999999999998887422 223455544 222233344332321111 0 02233378
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-CC-CCCCC--------Chhhhccce
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GG-GRMPL--------TPRFVRHFG 548 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-~~-gr~~l--------~~Rllr~f~ 548 (583)
++||++....- .+--.-.+++.+.+. ++.+|||.|.+ .. ..+.+ -..+.+||.
T Consensus 132 cfDEF~V~Dia--DAmil~rLf~~l~~~---------------gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~ 194 (362)
T PF03969_consen 132 CFDEFQVTDIA--DAMILKRLFEALFKR---------------GVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCD 194 (362)
T ss_pred EEeeeeccchh--HHHHHHHHHHHHHHC---------------CCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceE
Confidence 89999885432 121122355555553 46789999864 21 22222 235678999
Q ss_pred EEEeCCC
Q psy17974 549 LLSLPSP 555 (583)
Q Consensus 549 vi~i~~p 555 (583)
|+.++.+
T Consensus 195 vv~ld~~ 201 (362)
T PF03969_consen 195 VVELDGG 201 (362)
T ss_pred EEEecCC
Confidence 9999887
No 248
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.0044 Score=64.99 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=79.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccC----------------Cc-eEEEEEeccC---------CChHHHHHHHHhhhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASN----------------TW-AALTINFSAQ---------TSSARTQEILEGKLD 461 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~----------------~~-~~~~i~fS~~---------Tt~~~lq~~ie~~l~ 461 (583)
..|++||+|+||++++..+++.+--.. .+ .+..+.+.+. ...+++.++. ..+
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~-~~~- 105 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS-QKL- 105 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH-HHH-
Confidence 589999999999999998887641100 00 1112211111 1122222221 111
Q ss_pred hhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 462 KRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 462 ~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
.+.|..|++-|++||+.+.-... ....+|+-+=|- ..++.||-+++.+. .|.|
T Consensus 106 -----~~~p~~g~~kV~iI~~ae~m~~~-----AaNaLLKtLEEP-------------p~~~~fiL~~~~~~----~lLp 158 (319)
T PRK08769 106 -----ALTPQYGIAQVVIVDPADAINRA-----ACNALLKTLEEP-------------SPGRYLWLISAQPA----RLPA 158 (319)
T ss_pred -----hhCcccCCcEEEEeccHhhhCHH-----HHHHHHHHhhCC-------------CCCCeEEEEECChh----hCch
Confidence 23455556668889998765433 466778744331 23556666666655 6889
Q ss_pred hhhccceEEEeCCCCHHHHHHHHHH
Q psy17974 542 RFVRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 542 Rllr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
-+.+|+.++.++.|+.++.......
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHH
Confidence 9999999999999999887765543
No 249
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.19 E-value=0.00031 Score=71.07 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=61.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEE-EEEeccC--CChHHHHHHH-----Hhhhhh----hcC-----
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAAL-TINFSAQ--TSSARTQEIL-----EGKLDK----RTK----- 465 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~-~i~fS~~--Tt~~~lq~~i-----e~~l~~----~~~----- 465 (583)
+..|+.++++||+|+|||++++.+.+.+... ..... .+..+.. .+...+++.+ -+.++. +..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3468899999999999999999999876322 21222 2222333 4566666655 111110 000
Q ss_pred ----ccccCCCCCeEEEEecCCCCCC-----------cccCCCCC--hHHHHHHHHHhCCe
Q psy17974 466 ----TLLGAPLGKRLAVFVDDVNMPK-----------LETYGAQP--PIELLRQFLDFGGL 509 (583)
Q Consensus 466 ----~~~~p~~gk~~vlfiDDln~p~-----------~d~yg~q~--~lElLRq~ld~~g~ 509 (583)
..+. ..|++.++|+||+..-. ....|.++ +.+.++|+++.-|-
T Consensus 92 ~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~ 151 (249)
T cd01128 92 LEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARN 151 (249)
T ss_pred HHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcC
Confidence 0011 34789999999998421 11123333 56778999986554
No 250
>KOG0478|consensus
Probab=97.12 E-value=0.0014 Score=72.95 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=80.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC-hHHHHHHHHhhhhhhcC------ccccCCCCCeEEEE
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS-SARTQEILEGKLDKRTK------TLLGAPLGKRLAVF 479 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt-~~~lq~~ie~~l~~~~~------~~~~p~~gk~~vlf 479 (583)
.|+||||.||||||.+++.+.+-.+ ..-| -|..-+ +.-++..+-.- ...| |.+.-.. ..+..
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~p-Rg~y------TSGkGsSavGLTayVtrd--~dtkqlVLesGALVLSD--~GiCC 531 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLP-RGVY------TSGKGSSAVGLTAYVTKD--PDTRQLVLESGALVLSD--NGICC 531 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCC-ccee------ecCCccchhcceeeEEec--CccceeeeecCcEEEcC--CceEE
Confidence 7999999999999999998877552 2222 122211 11111111000 0111 1111122 23567
Q ss_pred ecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeE-eecCeEEEEecCCCCC----CC-----CCCChhhhccceE
Q psy17974 480 VDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWK-TLQDVVLCTACAPPGG----GR-----MPLTPRFVRHFGL 549 (583)
Q Consensus 480 iDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~-~i~~i~~iaa~~p~~~----gr-----~~l~~Rllr~f~v 549 (583)
|||++--... ++ ..|-+.+|....=-.+-.-.- --.+..++||+||.++ ++ -.|+|-|+++|.+
T Consensus 532 IDEFDKM~dS---tr---SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDL 605 (804)
T KOG0478|consen 532 IDEFDKMSDS---TR---SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDL 605 (804)
T ss_pred chhhhhhhHH---HH---HHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcE
Confidence 9999853211 22 234444443322111111111 1247899999998763 22 4689999999987
Q ss_pred EE--eCCCCHHHHHHHHHHHhccccc
Q psy17974 550 LS--LPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 550 i~--i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
|+ ++.|++..=.++-..+..-|+.
T Consensus 606 IylllD~~DE~~Dr~La~HivsLy~e 631 (804)
T KOG0478|consen 606 IFLLLDKPDERSDRRLADHIVALYPE 631 (804)
T ss_pred EEEEecCcchhHHHHHHHHHHHhccc
Confidence 55 5777776555565555555554
No 251
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.0087 Score=62.73 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 470 APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
|-.|.+-|++||+.+.-..+ ....+|+-+ |.- . ++.||-.++.+. .+.+-+.+|+.+
T Consensus 120 p~~~~~kVvII~~ae~m~~~-----aaNaLLK~L-EEP-----p--------~~~fILi~~~~~----~Ll~TI~SRcq~ 176 (314)
T PRK07399 120 PLEAPRKVVVIEDAETMNEA-----AANALLKTL-EEP-----G--------NGTLILIAPSPE----SLLPTIVSRCQI 176 (314)
T ss_pred cccCCceEEEEEchhhcCHH-----HHHHHHHHH-hCC-----C--------CCeEEEEECChH----hCcHHHHhhceE
Confidence 44556668889997654332 234455444 421 1 233454555443 788999999999
Q ss_pred EEeCCCCHHHHHHHHHHHh
Q psy17974 550 LSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l 568 (583)
+.++.++.+++..+.....
T Consensus 177 i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 177 IPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred EecCCCCHHHHHHHHHHhh
Confidence 9999999999988887653
No 252
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.05 E-value=0.0053 Score=66.05 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=61.2
Q ss_pred hhhHHHHHHH--HHhcCCceEEEccCCCcHHHHHHHHHHh--hcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc
Q psy17974 392 TIRFGSIMEK--LLLVNHPVMFTGVTGVGKTVVARSILNK--LLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTL 467 (583)
Q Consensus 392 t~r~~~ll~~--~l~~~~~vLL~Gp~GtGKT~li~~~l~~--l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~ 467 (583)
-.+...+... +++.+.|+++.||+|||||.++.++... +. . + ..+|+..+-.-+.. +.-+.
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~-s-G---------~f~T~a~Lf~~L~~----~~lg~ 257 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILI-S-G---------GTITVAKLFYNIST----RQIGL 257 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHH-c-C---------CcCcHHHHHHHHHH----HHHhh
Confidence 3445556665 8999999999999999999999986543 21 1 1 33455444332222 11111
Q ss_pred ccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee
Q psy17974 468 LGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY 510 (583)
Q Consensus 468 ~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y 510 (583)
-++.-++.+||+..-..++ ....+..|.-.++.|.|=
T Consensus 258 ----v~~~DlLI~DEvgylp~~~--~~~~v~imK~yMesg~fs 294 (449)
T TIGR02688 258 ----VGRWDVVAFDEVATLKFAK--PKELIGILKNYMESGSFT 294 (449)
T ss_pred ----hccCCEEEEEcCCCCcCCc--hHHHHHHHHHHHHhCcee
Confidence 2345578899998833332 223577888888866653
No 253
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.01 E-value=0.00076 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.7
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|.|.||||+|||++++.+++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988765
No 254
>KOG1514|consensus
Probab=97.00 E-value=0.0083 Score=67.42 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=97.3
Q ss_pred hHHHHHHHHHhc---CCceEEEccCCCcHHHHHHHHHHhhc------ccCCceEEEEEeccCCChHHHHHHHHhhhhhhc
Q psy17974 394 RFGSIMEKLLLV---NHPVMFTGVTGVGKTVVARSILNKLL------ASNTWAALTINFSAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 394 r~~~ll~~~l~~---~~~vLL~Gp~GtGKT~li~~~l~~l~------~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~ 464 (583)
....+++..+.. |.-+.+.|-||||||.++..++++|. .-..+..+.||--..+++.++=..|-..+...+
T Consensus 407 ~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~ 486 (767)
T KOG1514|consen 407 EIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER 486 (767)
T ss_pred HHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCc
Confidence 344555666654 34689999999999999999988663 123567777776666777665555544432211
Q ss_pred C----------ccc-cC-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeec--CeEEEEecC
Q psy17974 465 K----------TLL-GA-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQ--DVVLCTACA 530 (583)
Q Consensus 465 ~----------~~~-~p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~--~i~~iaa~~ 530 (583)
. ..| .| +..+.+|+.|||++..-.. .| +.|--+. .|-..+ .+.+||..|
T Consensus 487 ~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---~Q---dVlYn~f-----------dWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 487 VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---SQ---DVLYNIF-----------DWPTLKNSKLVVIAIAN 549 (767)
T ss_pred ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---cH---HHHHHHh-----------cCCcCCCCceEEEEecc
Confidence 0 112 23 4556789999999763321 12 2232222 244443 355666555
Q ss_pred CCCCCCCCCChhhhc-------cceEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 531 PPGGGRMPLTPRFVR-------HFGLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 531 p~~~gr~~l~~Rllr-------~f~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.- .++.|++- +|+-+.+.+.+.++|..|..+-|.+.
T Consensus 550 Tm-----dlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 550 TM-----DLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cc-----cCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 42 34444332 67789999999999999999999876
No 255
>KOG0480|consensus
Probab=96.96 E-value=0.00053 Score=75.69 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=90.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhh-hcCcccc----CC-CCCeE
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK-RTKTLLG----AP-LGKRL 476 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~-~~~~~~~----p~-~gk~~ 476 (583)
+....||+++|.||+|||.++++...=.+ + .++..-++.|++...- .+.| ...+-|. +- -+-..
T Consensus 375 lRGDinv~iVGDPgt~KSQfLk~v~~fsP-R----~vYtsGkaSSaAGLTa-----aVvkD~esgdf~iEAGALmLADnG 444 (764)
T KOG0480|consen 375 LRGDINVCIVGDPGTGKSQFLKAVCAFSP-R----SVYTSGKASSAAGLTA-----AVVKDEESGDFTIEAGALMLADNG 444 (764)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHhccCC-c----ceEecCcccccccceE-----EEEecCCCCceeeecCcEEEccCc
Confidence 44567999999999999999998765432 2 2223223322221111 1111 1122221 11 12345
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHH---HHhCCeeecCCCeeEeecCeEEEEecCCCCCC--C-------CCCChhhh
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQF---LDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG--R-------MPLTPRFV 544 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~---ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g--r-------~~l~~Rll 544 (583)
|..|||++--.. -..+.++|.+.|- +...|.-. .--.+..++||.||-+|- | -.+++.++
T Consensus 445 ICCIDEFDKMd~--~dqvAihEAMEQQtISIaKAGv~a------TLnARtSIlAAANPv~GhYdR~ktl~eNi~msApim 516 (764)
T KOG0480|consen 445 ICCIDEFDKMDV--KDQVAIHEAMEQQTISIAKAGVVA------TLNARTSILAAANPVGGHYDRKKTLRENINMSAPIM 516 (764)
T ss_pred eEEechhcccCh--HhHHHHHHHHHhheehheecceEE------eecchhhhhhhcCCcCCccccccchhhhcCCCchhh
Confidence 778999974322 2235567777652 23333321 112468899999997651 1 35789999
Q ss_pred ccceE--EEeCCCCHHHHHHHHHHHhccc
Q psy17974 545 RHFGL--LSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 545 r~f~v--i~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+||-+ |-++.|++..=..|-..+++-|
T Consensus 517 SRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 517 SRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 99975 6679999888888888888765
No 256
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.013 Score=61.36 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=79.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccC------------------Cc-eEEEEEe---ccCCChHHHHHHHHhhhhhhc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASN------------------TW-AALTINF---SAQTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~------------------~~-~~~~i~f---S~~Tt~~~lq~~ie~~l~~~~ 464 (583)
+..|++||.|+||+.++..+++.+--.+ .+ .+..+.- +...+.+++..+. ..+.
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~-~~~~--- 101 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCN-RLAQ--- 101 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHH-HHHh---
Confidence 4689999999999999998887651000 00 1111211 1122334443322 1111
Q ss_pred CccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 465 KTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 465 ~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
..|..|.+=|++||+.+.-..+ ....+|+-+=| + ..++.||-.++.+. .+.|-+.
T Consensus 102 ---~~~~~~~~kV~iI~~ae~m~~~-----AaNaLLKtLEE------P-------p~~t~fiL~t~~~~----~lLpTI~ 156 (319)
T PRK06090 102 ---ESSQLNGYRLFVIEPADAMNES-----ASNALLKTLEE------P-------APNCLFLLVTHNQK----RLLPTIV 156 (319)
T ss_pred ---hCcccCCceEEEecchhhhCHH-----HHHHHHHHhcC------C-------CCCeEEEEEECChh----hChHHHH
Confidence 1344455557889998765433 35566655433 1 23566776666554 6888899
Q ss_pred ccceEEEeCCCCHHHHHHHHHH
Q psy17974 545 RHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 545 r~f~vi~i~~p~~~sl~~I~~~ 566 (583)
+|+.++.++.|+.+.+......
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHH
Confidence 9999999999999988776543
No 257
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0021 Score=61.43 Aligned_cols=25 Identities=24% Similarity=0.590 Sum_probs=22.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|.-++|+||+|+|||++++.++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4778999999999999999999885
No 258
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.90 E-value=0.0084 Score=62.53 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=90.0
Q ss_pred CCCCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH
Q psy17974 378 PTMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 378 ~~~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
+..+|..++.-..-......-.+.+.....|.|+.|++||||-.++++.-..- ......+..+||.+-- ++ ..|
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S-~R~~~pFlalNCA~lP--e~---~aE 272 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS-PRHSKPFLALNCASLP--ED---AAE 272 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC-cccCCCeeEeecCCCc--hh---HhH
Confidence 34455554443332222223334456668899999999999999999875433 2344567778886633 33 234
Q ss_pred hhhhhhc------CccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCC
Q psy17974 458 GKLDKRT------KTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAP 531 (583)
Q Consensus 458 ~~l~~~~------~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p 531 (583)
+.+-.+. +|.|.-. ....+|+|+|.--.+. --.-+||-+-| | -|.+-..+--.-.|+++|||+..
T Consensus 273 sElFG~apg~~gk~GffE~A--ngGTVlLDeIgEmSp~-----lQaKLLRFL~D-G-tFRRVGee~Ev~vdVRVIcatq~ 343 (511)
T COG3283 273 SELFGHAPGDEGKKGFFEQA--NGGTVLLDEIGEMSPR-----LQAKLLRFLND-G-TFRRVGEDHEVHVDVRVICATQV 343 (511)
T ss_pred HHHhcCCCCCCCccchhhhc--cCCeEEeehhhhcCHH-----HHHHHHHHhcC-C-ceeecCCcceEEEEEEEEecccc
Confidence 4443221 2222222 1236799998643222 02457876655 4 44444333334469999999876
Q ss_pred CC-----CCCCCCChhhhccceEEEeCCC
Q psy17974 532 PG-----GGRMPLTPRFVRHFGLLSLPSP 555 (583)
Q Consensus 532 ~~-----~gr~~l~~Rllr~f~vi~i~~p 555 (583)
+- .|+ .-.-+..+.+|+.+.-|
T Consensus 344 nL~~lv~~g~--fReDLfyRLNVLtl~~P 370 (511)
T COG3283 344 NLVELVQKGK--FREDLFYRLNVLTLNLP 370 (511)
T ss_pred cHHHHHhcCc--hHHHHHHHhheeeecCC
Confidence 62 232 22344455577666555
No 259
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.87 E-value=0.0015 Score=69.24 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 394 RFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 394 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
....++..++..+.+++++||+|||||+++++++..++
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 35678899999999999999999999999999998764
No 260
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.014 Score=61.80 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=79.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhc--ccCC------------------ceEEEEEec---cCCChHHHHHHHHhhhhhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLL--ASNT------------------WAALTINFS---AQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~--~~~~------------------~~~~~i~fS---~~Tt~~~lq~~ie~~l~~~ 463 (583)
+..|+.||+|+||++++..+++.+. ++.. -.+..+.-. ...+.+++.+++ ..+.
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~-~~~~-- 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVT-EKLY-- 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHH-HHHh--
Confidence 5788999999999999998877651 0000 011112111 112334444332 2222
Q ss_pred cCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhh
Q psy17974 464 TKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRF 543 (583)
Q Consensus 464 ~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rl 543 (583)
+.|..|++=|++||+.+.-.. +....+|+-+=| + ..++.||-.+..|+ .+.|-+
T Consensus 102 ----~~~~~g~~kV~iI~~ae~m~~-----~AaNaLLKtLEE------P-------p~~t~fiL~t~~~~----~lLpTI 155 (334)
T PRK07993 102 ----EHARLGGAKVVWLPDAALLTD-----AAANALLKTLEE------P-------PENTWFFLACREPA----RLLATL 155 (334)
T ss_pred ----hccccCCceEEEEcchHhhCH-----HHHHHHHHHhcC------C-------CCCeEEEEEECChh----hChHHH
Confidence 235556666889998765433 345667765533 1 23566666666554 789999
Q ss_pred hccceEEEeCCCCHHHHHHHHH
Q psy17974 544 VRHFGLLSLPSPTEDTLKVIFK 565 (583)
Q Consensus 544 lr~f~vi~i~~p~~~sl~~I~~ 565 (583)
.+|+..+.++.|+.+.+..-..
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLS 177 (334)
T ss_pred HhccccccCCCCCHHHHHHHHH
Confidence 9999999999999888766543
No 261
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.82 E-value=0.0026 Score=68.08 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=48.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCce-EEEEEeccC--CChHHHHHHHHhhh-----hh----hcCc----
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWA-ALTINFSAQ--TSSARTQEILEGKL-----DK----RTKT---- 466 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~-~~~i~fS~~--Tt~~~lq~~ie~~l-----~~----~~~~---- 466 (583)
+..|+.++++||+|+|||++++.+++.+... ... ...+..+.. .+..++++.+...+ +. +.+-
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 4468899999999999999999988876322 111 112233322 34555555552211 10 0000
Q ss_pred ----cccCCCCCeEEEEecCCCC
Q psy17974 467 ----LLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 467 ----~~~p~~gk~~vlfiDDln~ 485 (583)
.+--..|++.|+|+|+++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 0001358899999999995
No 262
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.81 E-value=0.002 Score=67.98 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 394 RFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 394 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
....++..++..+.+++++|++|||||+++++++..++
T Consensus 148 ~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567888899999999999999999999999998774
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.80 E-value=0.0031 Score=61.48 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred HHHHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 397 SIMEKLLLVNH-PVMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 397 ~ll~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
..+..++.++. -+++.||+|||||++++.+...+. ..++.++.+.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~g~~v~~~a 53 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALE-AAGKRVIGLA 53 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHH-HTT--EEEEE
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHH-hCCCeEEEEC
Confidence 44555666664 467779999999999998877663 3345555543
No 264
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.78 E-value=0.0016 Score=57.58 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=20.5
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++||||||||++++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999876
No 265
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.77 E-value=0.0027 Score=66.88 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=46.8
Q ss_pred cceeeCchhhhHHHHHHHHHhc----CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLV----NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS 448 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~----~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt 448 (583)
+=+|--.+..+...++-.+++. |+.+||.||||||||+++-+++++|. ++..++.++-|.-.+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG--~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG--EDVPFVSISGSEIYS 90 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT--TTS-EEEEEGGGG-B
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC--CCCCeeEcccceeee
Confidence 4577777888888888888886 57999999999999999999999984 456677776665443
No 266
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0026 Score=61.31 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...++...+..+..++++||+|+|||++++.++..+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456778889999999999999999999999988765
No 267
>KOG1970|consensus
Probab=96.72 E-value=0.0095 Score=65.28 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+-+||+||+|||||+.++-+.+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhh
Confidence 357899999999999999888876
No 268
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.69 E-value=0.0017 Score=69.25 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|+..+++||+|+|||++++.+.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 3468899999999999999999988765
No 269
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.68 E-value=0.0036 Score=65.19 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=48.5
Q ss_pred ccceeeCchhhhHHHHHHHHHhcC----CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 383 FDMMVPTIDTIRFGSIMEKLLLVN----HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 383 ~~i~VpT~dt~r~~~ll~~~l~~~----~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.+=+|--.+..+...++-.+++.| +.||++||||||||+++-.+.++|. ++..++.++-|.-
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG--~dvPF~~isgsEi 103 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELG--EDVPFVAISGSEI 103 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhC--CCCCceeecccee
Confidence 445777777788888888888865 7999999999999999999999983 3455555655543
No 270
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.68 E-value=0.01 Score=61.18 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred ceeeCchhhhHHHHHHHHHhcC-----CceEEEccCCCcHHHHHHHHHHhhccc-----CCceEEEEEeccCCChHHHHH
Q psy17974 385 MMVPTIDTIRFGSIMEKLLLVN-----HPVMFTGVTGVGKTVVARSILNKLLAS-----NTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 385 i~VpT~dt~r~~~ll~~~l~~~-----~~vLL~Gp~GtGKT~li~~~l~~l~~~-----~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
-.|.-+.......-++.++..- .++||+|++|.|||++++.+.+..+.. +...++.+..-+.-+...+-.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 3455555555555556665543 478999999999999999998754211 123455565544444444444
Q ss_pred HHHhhhhhh----------c---CccccCCCCCeEEEEecCCCCCCcccCCCC-ChHHHHHHHHHhCCeeecCCCeeEee
Q psy17974 455 ILEGKLDKR----------T---KTLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTL 520 (583)
Q Consensus 455 ~ie~~l~~~----------~---~~~~~p~~gk~~vlfiDDln~p~~d~yg~q-~~lElLRq~ld~~g~yd~~~~~~~~i 520 (583)
.|...+.-- . ..++. ..|-+ ++.|||+|-.-...+-.| ..+.+||.+-..
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr-~~~vr-mLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-------------- 178 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLR-RLGVR-MLIIDEFHNLLAGSYRKQREFLNALKFLGNE-------------- 178 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHH-HcCCc-EEEeechHHHhcccHHHHHHHHHHHHHHhhc--------------
Confidence 433332110 0 01111 12223 578999997543332223 256667666321
Q ss_pred cCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCH
Q psy17974 521 QDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTE 557 (583)
Q Consensus 521 ~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~ 557 (583)
-++.+||+-.+..-.--.-++-+-+||..+.+|.-..
T Consensus 179 L~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~ 215 (302)
T PF05621_consen 179 LQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWEL 215 (302)
T ss_pred cCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCC
Confidence 1466676533322111234688889999999987543
No 271
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.0015 Score=59.60 Aligned_cols=22 Identities=27% Similarity=0.677 Sum_probs=20.3
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|+++||||||||++++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999765
No 272
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.55 E-value=0.0045 Score=64.42 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...++..+++.+.+++++||+|||||+++++++..+
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 345677788899999999999999999999998765
No 273
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.55 E-value=0.0035 Score=57.18 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 391 DTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 391 dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+|.+....+...+..+.-++|.|+.|+|||++++.+++.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45666666777778889999999999999999999999873
No 274
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.54 E-value=0.0023 Score=60.67 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=27.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.+..++++|++|+|||++++.++..+.....+ ++.++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 35689999999999999999998877544344 777777665
No 275
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.47 E-value=0.0038 Score=63.74 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.....++...++.+.+++++||+|||||+++++++..++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 344456666677799999999999999999999998874
No 276
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.47 E-value=0.0046 Score=64.91 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...++..++..+.+++++|++|||||+++++++..+
T Consensus 133 ~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 133 QASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346678889999999999999999999999998765
No 277
>PRK04296 thymidine kinase; Provisional
Probab=96.45 E-value=0.011 Score=57.22 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.=++++||+|+|||+.+..++...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 447899999999999998887765
No 278
>KOG0477|consensus
Probab=96.43 E-value=0.0011 Score=72.88 Aligned_cols=149 Identities=16% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCc------eEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTW------AALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~------~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlf 479 (583)
..||||+|.||||||..++...+.- +..-+ ..+.++.+.+-.|-. =|..|+ +|.+. -..+.|..
T Consensus 482 DinvLL~GDPGTaKSQFLKY~eK~s-~RAV~tTGqGASavGLTa~v~KdPvt----rEWTLE---aGALV--LADkGvCl 551 (854)
T KOG0477|consen 482 DINVLLLGDPGTAKSQFLKYAEKTS-PRAVFTTGQGASAVGLTAYVRKDPVT----REWTLE---AGALV--LADKGVCL 551 (854)
T ss_pred ceeEEEecCCCccHHHHHHHHHhcC-cceeEeccCCccccceeEEEeeCCcc----ceeeec---cCeEE--EccCceEE
Confidence 4699999999999999999877642 11100 000111111000000 000011 11111 12355778
Q ss_pred ecCCCCCCcccCCCCChHHHHHHH---HHhCCeeecCCCeeEeecCeEEEEecCCCCCCCC----------CCChhhhcc
Q psy17974 480 VDDVNMPKLETYGAQPPIELLRQF---LDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRM----------PLTPRFVRH 546 (583)
Q Consensus 480 iDDln~p~~d~yg~q~~lElLRq~---ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~----------~l~~Rllr~ 546 (583)
|||++--. | -.-.++.|.+.|- +..-|.-. .--..+++|||.||-| ||. .++...+++
T Consensus 552 IDEFDKMn-d-qDRtSIHEAMEQQSISISKAGIVt------sLqArctvIAAanPig-GRY~~s~tFaqNV~ltePIlSR 622 (854)
T KOG0477|consen 552 IDEFDKMN-D-QDRTSIHEAMEQQSISISKAGIVT------SLQARCTVIAAANPIG-GRYNPSLTFAQNVDLTEPILSR 622 (854)
T ss_pred eehhhhhc-c-cccchHHHHHHhcchhhhhhhHHH------HHHhhhhhheecCCCC-CccCCccchhhccccccchhhh
Confidence 99987421 1 1223466766552 11111110 0114688999999875 443 677888999
Q ss_pred ceEEEeC-----CCCHHHH-HHHHHHHhccccc
Q psy17974 547 FGLLSLP-----SPTEDTL-KVIFKVRTSPGKQ 573 (583)
Q Consensus 547 f~vi~i~-----~p~~~sl-~~I~~~~l~~~l~ 573 (583)
|-++++- +-.++.+ +-+.+++.+.|-.
T Consensus 623 FDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~ 655 (854)
T KOG0477|consen 623 FDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPS 655 (854)
T ss_pred cceeeeeecccCchhHHHHHHHHHHhHhhcCCc
Confidence 9888763 2223333 3377777776643
No 279
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.43 E-value=0.0089 Score=68.18 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCC-ceEEEEEeccCCChHHHH
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNT-WAALTINFSAQTSSARTQ 453 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~-~~~~~i~fS~~Tt~~~lq 453 (583)
..+...+..+++++|+||||||||++++.+++.+. .+. +.+..+ .++.-++..+.
T Consensus 28 ~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~-~n~~~~~~~~~ 83 (608)
T TIGR00764 28 EIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVY-PNPEDPNMPRI 83 (608)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEE-eCCCCCchHHH
Confidence 45677777889999999999999999999999884 333 344433 34444444443
No 280
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.38 E-value=0.034 Score=60.24 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=72.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC-CChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ-TSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~-Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++.||.+||||++++.+...+. +. .+.++|-.. .+...+.+.+....+. +.+ ++..+|+||++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~--~~--~iy~~~~d~~~~~~~l~d~~~~~~~~-----~~~---~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL--EE--IIYINFDDLRLDRIELLDLLRAYIEL-----KER---EKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC--cc--eEEEEecchhcchhhHHHHHHHHHHh-----hcc---CCceEEEecccCc
Confidence 689999999999999988887663 22 555655332 1222222222222221 111 6778999999875
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKV 562 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~ 562 (583)
.. -...|+-+.|.|-. + ++.+.+...--...++..|..|...+.+.+.|-.+...
T Consensus 107 ~~-------W~~~lk~l~d~~~~------------~--v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 PD-------WERALKYLYDRGNL------------D--VLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred hh-------HHHHHHHHHccccc------------e--EEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 42 23456666664421 2 33333333223345677787888888888888877654
No 281
>PF13245 AAA_19: Part of AAA domain
Probab=96.37 E-value=0.0045 Score=50.86 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred HHhcCCceE-EEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVM-FTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vL-L~Gp~GtGKT~li~~~l~~l 430 (583)
.+. +.+++ +.||||||||+++.+.+..+
T Consensus 6 al~-~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 6 ALA-GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred HHh-hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344 45555 59999999997766665543
No 282
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.35 E-value=0.026 Score=62.99 Aligned_cols=163 Identities=21% Similarity=0.216 Sum_probs=98.6
Q ss_pred chhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 390 IDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 390 ~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
+.+.+....++.+.....||+++|+|||||-.+++++..+.. ..=..+.+||.+.+. ..+|+.+-....|.|.
T Consensus 320 ~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~--~~gpfvAvNCaAip~-----~liesELFGy~~GafT 392 (606)
T COG3284 320 PSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE--AAGPFVAVNCAAIPE-----ALIESELFGYVAGAFT 392 (606)
T ss_pred HHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc--ccCCeEEEEeccchH-----HhhhHHHhccCccccc
Confidence 345666677888888999999999999999999999988753 334678899988654 3456665443333321
Q ss_pred ------CC----CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-----C
Q psy17974 470 ------AP----LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-----G 534 (583)
Q Consensus 470 ------p~----~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-----~ 534 (583)
+. ......+|+|||---+.+ .| ..+||-+-| |-.-... .+- .-.||++|+|+.-+- .
T Consensus 393 ga~~kG~~g~~~~A~gGtlFldeIgd~p~~---~Q--s~LLrVl~e-~~v~p~g-~~~-~~vdirvi~ath~dl~~lv~~ 464 (606)
T COG3284 393 GARRKGYKGKLEQADGGTLFLDEIGDMPLA---LQ--SRLLRVLQE-GVVTPLG-GTR-IKVDIRVIAATHRDLAQLVEQ 464 (606)
T ss_pred cchhccccccceecCCCccHHHHhhhchHH---HH--HHHHHHHhh-CceeccC-Ccc-eeEEEEEEeccCcCHHHHHHc
Confidence 11 112346799998532211 11 246665544 4333322 222 346999999987651 2
Q ss_pred CC--CCCChhhhccceEEEeCCC-----CHHHHHHHHHHHhc
Q psy17974 535 GR--MPLTPRFVRHFGLLSLPSP-----TEDTLKVIFKVRTS 569 (583)
Q Consensus 535 gr--~~l~~Rllr~f~vi~i~~p-----~~~sl~~I~~~~l~ 569 (583)
|+ .++--|| +-.+|.+|+. ...-|.+|+.....
T Consensus 465 g~fredLyyrL--~~~~i~lP~lr~R~d~~~~l~~~~~~~~~ 504 (606)
T COG3284 465 GRFREDLYYRL--NAFVITLPPLRERSDRIPLLDRILKREND 504 (606)
T ss_pred CCchHHHHHHh--cCeeeccCchhcccccHHHHHHHHHHccC
Confidence 43 3343343 3446677665 23455666655544
No 283
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.32 E-value=0.05 Score=54.63 Aligned_cols=147 Identities=23% Similarity=0.347 Sum_probs=82.2
Q ss_pred HHHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHH-HHHHHHhhh------------hhh
Q psy17974 398 IMEKLLLVNH-PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSAR-TQEILEGKL------------DKR 463 (583)
Q Consensus 398 ll~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~-lq~~ie~~l------------~~~ 463 (583)
.+...+..++ -+.++|+-|||||++.++++..+. .+.... +...+.|-+.. +...+...+ ++.
T Consensus 42 ~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~-~d~~~~--v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~ 118 (269)
T COG3267 42 MLHAAIADGQGILAVTGEVGSGKTVLRRALLASLN-EDQVAV--VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQI 118 (269)
T ss_pred HHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcC-CCceEE--EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHH
Confidence 3455566676 779999999999999997777763 444434 33344332221 222221111 111
Q ss_pred cCcccc-CCCCCe-EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 464 TKTLLG-APLGKR-LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 464 ~~~~~~-p~~gk~-~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
..+... -..|++ .++++||.+--..+ .+|.||-+.+.--=| ... ..++-...| .+.+
T Consensus 119 ~~~L~al~~~g~r~v~l~vdEah~L~~~------~le~Lrll~nl~~~~-------~~~--l~ivL~Gqp------~L~~ 177 (269)
T COG3267 119 DRELAALVKKGKRPVVLMVDEAHDLNDS------ALEALRLLTNLEEDS-------SKL--LSIVLIGQP------KLRP 177 (269)
T ss_pred HHHHHHHHHhCCCCeEEeehhHhhhChh------HHHHHHHHHhhcccc-------cCc--eeeeecCCc------ccch
Confidence 112211 124555 89999999876544 699999887633111 111 333333222 4555
Q ss_pred hh--------hccceE-EEeCCCCHHHHHHHHHHHh
Q psy17974 542 RF--------VRHFGL-LSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 542 Rl--------lr~f~v-i~i~~p~~~sl~~I~~~~l 568 (583)
|+ -+|+.+ |.+++.+.+....-....+
T Consensus 178 ~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~L 213 (269)
T COG3267 178 RLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRL 213 (269)
T ss_pred hhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHH
Confidence 44 346677 8999988886444333333
No 284
>PHA02774 E1; Provisional
Probab=96.31 E-value=0.032 Score=62.27 Aligned_cols=147 Identities=17% Similarity=0.130 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC
Q psy17974 394 RFGSIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA 470 (583)
Q Consensus 394 r~~~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p 470 (583)
.....++.++... ..++++||||||||+++.++++-+. +....++|- .+ ...+.|
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~---G~vi~fvN~---~s----------------~FwLqp 476 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK---GKVISFVNS---KS----------------HFWLQP 476 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEEC---cc----------------ccccch
Confidence 3444566666542 3699999999999999999998772 223334442 11 111344
Q ss_pred CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe-eecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 471 PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL-YDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 471 ~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
-.+.+ ++++||+-.+.- +-.-+.||.++|.... .|.+-..-+.+..--+|-|+|...... .--.-|.+|..+
T Consensus 477 l~d~k-i~vlDD~t~~~w-----~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~-~~~~yL~sRi~~ 549 (613)
T PHA02774 477 LADAK-IALLDDATHPCW-----DYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAE-DRYKYLHSRITV 549 (613)
T ss_pred hccCC-EEEEecCcchHH-----HHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccc-hhhHHhhhhEEE
Confidence 44555 578999844311 1123478999985522 233333334455555666777543110 001122335555
Q ss_pred EEeCCC-------------CHHHHHHHHHHHhc
Q psy17974 550 LSLPSP-------------TEDTLKVIFKVRTS 569 (583)
Q Consensus 550 i~i~~p-------------~~~sl~~I~~~~l~ 569 (583)
++.+.| ++.+-+.-|..+-.
T Consensus 550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~ 582 (613)
T PHA02774 550 FEFPNPFPLDENGNPVFELTDANWKSFFERLWS 582 (613)
T ss_pred EECCCCCCcCCCCCEeeeeCchhHHHHHHHHHH
Confidence 665543 44555556655543
No 285
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.31 E-value=0.0057 Score=65.04 Aligned_cols=111 Identities=10% Similarity=0.126 Sum_probs=61.3
Q ss_pred HHHHHH--hcCCceEEEccCCCcHHHHHHHHHHhhcccC-Cce-EEEEEeccCCChHHHHHHHHhhhhhh--------cC
Q psy17974 398 IMEKLL--LVNHPVMFTGVTGVGKTVVARSILNKLLASN-TWA-ALTINFSAQTSSARTQEILEGKLDKR--------TK 465 (583)
Q Consensus 398 ll~~~l--~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~-~~~i~fS~~Tt~~~lq~~ie~~l~~~--------~~ 465 (583)
+++.++ ..|+.++++||+|||||++++.+++.+.... +.. ++..--...-+..++.+.+...+.-. +-
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~ 202 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHI 202 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHH
Confidence 455554 4678999999999999999999988763211 221 22121222234445554442211100 00
Q ss_pred cc---------ccCCCCCeEEEEecCCCCCC---------cc---cCCC-CChHHHHHHHHHhCC
Q psy17974 466 TL---------LGAPLGKRLAVFVDDVNMPK---------LE---TYGA-QPPIELLRQFLDFGG 508 (583)
Q Consensus 466 ~~---------~~p~~gk~~vlfiDDln~p~---------~d---~yg~-q~~lElLRq~ld~~g 508 (583)
.. +--..|+..|+++||+..-. .. ..|. -.+++.++.+++.-|
T Consensus 203 ~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A~ 267 (380)
T PRK12608 203 RVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFGAAR 267 (380)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHHhcC
Confidence 00 01125889999999998411 00 1222 236778888888433
No 286
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.26 E-value=0.0061 Score=63.73 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
...+++..+..+.+++++||+|||||++++.++..++
T Consensus 133 ~~~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 133 IKEFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4567788899999999999999999999999987663
No 287
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.17 E-value=0.073 Score=63.56 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=78.8
Q ss_pred HHHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC-CChHHHHHHHHhhhhhhcCc------
Q psy17974 396 GSIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ-TSSARTQEILEGKLDKRTKT------ 466 (583)
Q Consensus 396 ~~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~-Tt~~~lq~~ie~~l~~~~~~------ 466 (583)
..++..+-.. .+=++++||+|.|||+++...+... . .+.-+++... .++..+...+...+.+...+
T Consensus 20 ~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~--~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~ 94 (903)
T PRK04841 20 ERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK--N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSE 94 (903)
T ss_pred hHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC--C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhh
Confidence 3444444332 3457999999999999999988754 1 2334455432 34443433332223211000
Q ss_pred ----ccc-C--------------CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 467 ----LLG-A--------------PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 467 ----~~~-p--------------~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
..+ + ..+.+++++|||+|..... .+.++|+.++.+. ..++.+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~-----~~~~~l~~l~~~~------------~~~~~lv~ 157 (903)
T PRK04841 95 ALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNP-----EIHEAMRFFLRHQ------------PENLTLVV 157 (903)
T ss_pred hhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCCh-----HHHHHHHHHHHhC------------CCCeEEEE
Confidence 000 0 1256899999999986422 4677999998753 13455555
Q ss_pred ecCC-CCCCCCCC-ChhhhccceEEEeC--CCCHHHHHHHHHHHhc
Q psy17974 528 ACAP-PGGGRMPL-TPRFVRHFGLLSLP--SPTEDTLKVIFKVRTS 569 (583)
Q Consensus 528 a~~p-~~~gr~~l-~~Rllr~f~vi~i~--~p~~~sl~~I~~~~l~ 569 (583)
++.. |+- .+ .-+....+..+... ..+.++....+...+.
T Consensus 158 ~sR~~~~~---~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~ 200 (903)
T PRK04841 158 LSRNLPPL---GIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS 200 (903)
T ss_pred EeCCCCCC---chHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence 5433 211 11 11222232333333 5577777776665543
No 288
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.10 E-value=0.021 Score=61.03 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=51.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhc-ccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCC--------CCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLL-ASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAP--------LGK 474 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~-~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~--------~gk 474 (583)
++-+.|+||+|+|||+++..++.... ......+..|+.-..--. ++++. .-..+.---.-++.|. -..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~-Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT-YADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH-HHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 88999999999999998877765442 123344444433221111 12221 1111111111111111 112
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
.-+|+||-..++..|. .-++-|+.+++.+
T Consensus 282 ~d~ILVDTaGrs~~D~----~~i~el~~~~~~~ 310 (407)
T COG1419 282 CDVILVDTAGRSQYDK----EKIEELKELIDVS 310 (407)
T ss_pred CCEEEEeCCCCCccCH----HHHHHHHHHHhcc
Confidence 3478999999888773 4566677777644
No 289
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.02 Score=61.29 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.6
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++..+..++|+||+|+|||+++..++...
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999988754
No 290
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.06 E-value=0.036 Score=66.72 Aligned_cols=80 Identities=31% Similarity=0.509 Sum_probs=58.3
Q ss_pred ecccccEEEEecCCCCCCCCCchHHHhccc--ceeeecCCcchhHHHHhhcccccchHHHHHHHHHHHHHHHhhCCCCcc
Q psy17974 141 LVPSCAAFITMNPGYAGRTELPDNLKALFR--PMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQDH 218 (583)
Q Consensus 141 L~~~~~ifiTmnp~y~gr~eLP~nlk~lfr--~~~m~~pd~~~I~e~~l~~~gf~~a~~l~~k~~~~~~~~~~~ls~q~h 218 (583)
+..++..|.+||=+|.+| |||-.|++.|- .-..-.||.++|. ++..| -.+.++.+++.--. ..-+.|.|
T Consensus 1686 ~k~~~k~~lq~~y~y~pR-eLtR~lr~i~~yaeT~~~t~~~slI~---~wy~e--a~r~~~dRLV~qkE---~st~~q~l 1756 (3164)
T COG5245 1686 SKDKTKFFLQMNYGYKPR-ELTRSLRAIFGYAETRIDTPDVSLII---DWYCE--AIREKIDRLVQQKE---SSTSRQDL 1756 (3164)
T ss_pred HHHhhhhhcccccccChH-HHHHHHHHHHhHHhcCCCCCcHHHHH---HHHHH--HHHHHHHHHHHHHh---cchHHHHH
Confidence 346788999999999999 99999999998 5555667777774 44332 24566666665433 22457999
Q ss_pred ccccchhHHHH
Q psy17974 219 YDFGMRAVKSV 229 (583)
Q Consensus 219 ydfglR~lk~v 229 (583)
||||+|++...
T Consensus 1757 y~~~~~~~~e~ 1767 (3164)
T COG5245 1757 YDFGLRAIREM 1767 (3164)
T ss_pred HHHHHHhhhhh
Confidence 99999988744
No 291
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.05 E-value=0.0051 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=19.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|+|.|+||||||++++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999988763
No 292
>KOG2228|consensus
Probab=96.02 E-value=0.013 Score=60.82 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh-cccCCceEEEEEeccCCChHHHHHH---HHhhhhhh--cCccccC--------
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL-LASNTWAALTINFSAQTSSARTQEI---LEGKLDKR--TKTLLGA-------- 470 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l-~~~~~~~~~~i~fS~~Tt~~~lq~~---ie~~l~~~--~~~~~~p-------- 470 (583)
.+..|+++||.|+|||+++...+... ...+++..+.+|-.-+|+.-.+.++ +...+++. .-|.|.+
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHH
Confidence 45799999999999999999877652 1245566666666556632222222 22223321 1222322
Q ss_pred -----CCCCeEEEE-ecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 471 -----PLGKRLAVF-VDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 471 -----~~gk~~vlf-iDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
...+--|+| +||+++-..- -||.+=|+-| |.... .-..+-++|.+..-. --.-+-.|..
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlf-Disqs---~r~Piciig~Ttrld-~lE~LEKRVK 192 (408)
T KOG2228|consen 128 LKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLF-DISQS---ARAPICIIGVTTRLD-ILELLEKRVK 192 (408)
T ss_pred HhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHH-HHHhh---cCCCeEEEEeecccc-HHHHHHHHHH
Confidence 111222555 5677763322 2454444322 22110 113566666543221 0012345667
Q ss_pred ccce--EEEeCCC-CHHHHHHHHHHHh
Q psy17974 545 RHFG--LLSLPSP-TEDTLKVIFKVRT 568 (583)
Q Consensus 545 r~f~--vi~i~~p-~~~sl~~I~~~~l 568 (583)
+||+ +|++.++ +-++...||...+
T Consensus 193 SRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 193 SRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hhcccceeeccCCCChHHHHHHHHHHh
Confidence 7885 5555544 6688888998887
No 293
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.99 E-value=0.0081 Score=63.07 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 396 GSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 396 ~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..++..++..+.+++++|++|||||+++++++..
T Consensus 138 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 138 REAIIAAVRAHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4567888889999999999999999999999875
No 294
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.96 E-value=0.0074 Score=59.14 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++..+.-.++.||||||||+++..++..+
T Consensus 10 i~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 10 IQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 44455444448999999999999888777665
No 295
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.93 E-value=0.012 Score=62.59 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=27.5
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+.+.+...+..++++||+|||||+++++++..+.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3444445677899999999999999999988763
No 296
>KOG3347|consensus
Probab=95.93 E-value=0.012 Score=54.17 Aligned_cols=133 Identities=20% Similarity=0.250 Sum_probs=70.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc-cCCCCCeEEEEecCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL-GAPLGKRLAVFVDDV 483 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~-~p~~gk~~vlfiDDl 483 (583)
.+-++|++|-||||||+++..++... ++. .|+.|....- +..| |-...-++ .++||
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~----~~~--~i~isd~vkE---------------n~l~~gyDE~y~c-~i~DE- 62 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT----GLE--YIEISDLVKE---------------NNLYEGYDEEYKC-HILDE- 62 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh----CCc--eEehhhHHhh---------------hcchhcccccccC-ccccH-
Confidence 45689999999999999999998754 222 3444432211 1111 11122222 34454
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeE--eecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHH
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWK--TLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTL 560 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~--~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl 560 (583)
| .++.-|.-.+..||.. |.+...+. ..-|..||..|-.. .|-.||..|- .++.-+
T Consensus 63 -----d-----kv~D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s-----~LY~RL~sRg-------Y~e~Ki 120 (176)
T KOG3347|consen 63 -----D-----KVLDELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNS-----VLYDRLKSRG-------YSEKKI 120 (176)
T ss_pred -----H-----HHHHHHHHHHhcCCcEEeecccCccchhheeEEEEEecCch-----HHHHHHHHcC-------CCHHHH
Confidence 1 2445555555446543 33322111 11255566655332 4667776553 233322
Q ss_pred H-----HHHHHHhcccccCCCcccccc
Q psy17974 561 K-----VIFKVRTSPGKQEGTSSILAE 582 (583)
Q Consensus 561 ~-----~I~~~~l~~~l~~~~~~~~~~ 582 (583)
. .||+++++..-.++.+.|+.|
T Consensus 121 ~eNiecEIfgv~~eea~eSy~~~iV~e 147 (176)
T KOG3347|consen 121 KENIECEIFGVVLEEARESYSPKIVVE 147 (176)
T ss_pred hhhcchHHHHHHHHHHHHHcCCcceee
Confidence 2 388888876666666666654
No 297
>PRK08118 topology modulation protein; Reviewed
Probab=95.89 E-value=0.0062 Score=57.82 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=21.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++++||||||||++++.+.+.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 298
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.87 E-value=0.024 Score=52.32 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=42.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceE----EEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAA----LTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~----~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
+..|..+.+.||+|+|||++++.+........+-.. ..+.+..+.+..+.|++...+.- ..++-++
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral----------~~~p~il 92 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLL----------LENPNLL 92 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHH----------hcCCCEE
Confidence 557889999999999999999988765422222111 12344444555665554322211 1123378
Q ss_pred EecCC
Q psy17974 479 FVDDV 483 (583)
Q Consensus 479 fiDDl 483 (583)
++||-
T Consensus 93 llDEP 97 (144)
T cd03221 93 LLDEP 97 (144)
T ss_pred EEeCC
Confidence 88994
No 299
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.85 E-value=0.0018 Score=66.36 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=21.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
|+|+|-||||||++++.+...+. ..++.+..++
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~-~~~~~v~~i~ 36 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLE-EKGKEVVIIS 36 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHH-HTT--EEEE-
T ss_pred EEEEcCCCCcHHHHHHHHHHHHH-hcCCEEEEEc
Confidence 68999999999999999888763 2345555443
No 300
>PRK13764 ATPase; Provisional
Probab=95.85 E-value=0.012 Score=66.49 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+++.+...+.++|++||||||||+++++++..+.
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45677778889999999999999999999988764
No 301
>PHA02624 large T antigen; Provisional
Probab=95.85 E-value=0.017 Score=64.77 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc---CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 395 FGSIMEKLLLV---NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 395 ~~~ll~~~l~~---~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
....++.++++ ++-++|.||+|||||+++.++++-+
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L 455 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC 455 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 33445555554 4578999999999999999999987
No 302
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.83 E-value=0.01 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
-++++||+|||||++++.++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999999999888763
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.78 E-value=0.0079 Score=56.54 Aligned_cols=26 Identities=23% Similarity=0.542 Sum_probs=23.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..++|+|+||||||++++.+++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 304
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.73 E-value=0.075 Score=54.59 Aligned_cols=89 Identities=22% Similarity=0.393 Sum_probs=62.1
Q ss_pred ccccEEEEecCCCCCCCCCchHHHhcccceeeecCCcch-------hHHHHhhcccccc-----hHHHHHHHHHHHHHHH
Q psy17974 143 PSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGL-------IAEVVLYSEGFES-----SKNLAQKMVNMYKLCS 210 (583)
Q Consensus 143 ~~~~ifiTmnp~y~gr~eLP~nlk~lfr~~~m~~pd~~~-------I~e~~l~~~gf~~-----a~~l~~k~~~~~~~~~ 210 (583)
.++.+-.+|||+ +||..+|.-+.+.|+-+++..|+-+- |.+..|...+|.. +..+.+-.+.+|+..+
T Consensus 147 ~~i~~vaa~~p~-~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~ 225 (272)
T PF12775_consen 147 EDIQFVAAMNPT-GGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKNGGFPEDVQKLADKLVQATIELYQKIR 225 (272)
T ss_dssp CSEEEEEEESST-TT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEecCCC-CCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 456677899995 59999999999999999999998753 3333343456743 5567777888998888
Q ss_pred hhCCC---CccccccchhHHHHHHH
Q psy17974 211 EQLSQ---QDHYDFGMRAVKSVLVM 232 (583)
Q Consensus 211 ~~ls~---q~hydfglR~lk~vl~~ 232 (583)
+++-+ ..||-|.||.+-.|+.-
T Consensus 226 ~~~~ptp~k~HY~FnlRDlsrv~qG 250 (272)
T PF12775_consen 226 QQFLPTPSKPHYTFNLRDLSRVFQG 250 (272)
T ss_dssp HHS-TTTTCTTTTSHHHHHHHHHHH
T ss_pred cccCCCCccceeeccHHHHHHHHHH
Confidence 88743 36999999999999853
No 305
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.73 E-value=0.034 Score=59.23 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=54.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh--cccCCceEEEEEeccCCChHHHHHHHHhhh-hhhcCccc----------c---C
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL--LASNTWAALTINFSAQTSSARTQEILEGKL-DKRTKTLL----------G---A 470 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l--~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l-~~~~~~~~----------~---p 470 (583)
+-+++.|.||||||.++-+++..+ .. .....+.+..+... ...++..+.... ....+..+ . .
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~~l-~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNHPL-RNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecchH-HHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 357899999999999999999877 22 23334445444422 233444443332 11111111 1 1
Q ss_pred CCCCeEEEEecCCCCCCc--ccCCCCChHHHHHHHHHhC
Q psy17974 471 PLGKRLAVFVDDVNMPKL--ETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 471 ~~gk~~vlfiDDln~p~~--d~yg~q~~lElLRq~ld~~ 507 (583)
+..+--+++|||.|.... +.+....-.+.|..++...
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~ 118 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRA 118 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcC
Confidence 223456889999997655 2222222345566666543
No 306
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.72 E-value=0.015 Score=55.81 Aligned_cols=25 Identities=24% Similarity=0.728 Sum_probs=23.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++++|+||+|+|||++++.+++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~ 26 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF 26 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999976
No 307
>KOG0482|consensus
Probab=95.71 E-value=0.0049 Score=66.68 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=84.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC--CChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ--TSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~--Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
.+.||+|.|.||+.||.+++.+.+-- ....|.+- .-|+. .|+.-..+-+-+.+. -.||.+.-. ...|..|||
T Consensus 374 GdINicLmGDPGVAKSQLLkyi~rla-pRgvYTTG--rGSSGVGLTAAVmkDpvTgEM~-LEGGALVLA--D~GICCIDE 447 (721)
T KOG0482|consen 374 GDINICLMGDPGVAKSQLLKYISRLA-PRGVYTTG--RGSSGVGLTAAVMKDPVTGEMV-LEGGALVLA--DGGICCIDE 447 (721)
T ss_pred cceeEEecCCCchhHHHHHHHHHhcC-cccceecC--CCCCccccchhhhcCCCCCeeE-eccceEEEc--cCceEeehh
Confidence 35689999999999999999876632 23323221 11111 122111111111111 012222111 133668999
Q ss_pred CC-CCCcccCCCCChHHHHHHH---HHhCCeeecCCCeeEeecCeEEEEecCCCCCC---------CCCCChhhhccceE
Q psy17974 483 VN-MPKLETYGAQPPIELLRQF---LDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG---------RMPLTPRFVRHFGL 549 (583)
Q Consensus 483 ln-~p~~d~yg~q~~lElLRq~---ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g---------r~~l~~Rllr~f~v 549 (583)
++ |...|. ..+.|.+.|- +..-|.-. .--.++.++||.||..|- ...+|+.|+++|-+
T Consensus 448 fDKM~e~DR---tAIHEVMEQQTISIaKAGI~T------tLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDl 518 (721)
T KOG0482|consen 448 FDKMDESDR---TAIHEVMEQQTISIAKAGINT------TLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDL 518 (721)
T ss_pred hhhhhhhhh---HHHHHHHHhhhhhhhhhcccc------chhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhh
Confidence 97 344443 3355666552 22223211 112468899999997542 14689999999987
Q ss_pred EE--eCCCCHHHHHHHHHHHhcccccCCC
Q psy17974 550 LS--LPSPTEDTLKVIFKVRTSPGKQEGT 576 (583)
Q Consensus 550 i~--i~~p~~~sl~~I~~~~l~~~l~~~~ 576 (583)
++ .+.|+.++=...-+.+.--|..+..
T Consensus 519 l~Li~D~pdrd~D~~LA~HiTyVH~H~~q 547 (721)
T KOG0482|consen 519 LWLIQDRPDRDNDLRLAQHITYVHQHEEQ 547 (721)
T ss_pred hhhhccCCcccchHHHHHHhHhhhccCCC
Confidence 55 4678776655555555555554433
No 308
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.65 E-value=0.022 Score=54.29 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=29.2
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+++.||||||||+++..++.... +.+-.+..+ |...+++++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~--s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYV--TLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEE--ECCCCHHHHHHH
Confidence 78999999999999998876542 223344444 444556665443
No 309
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.61 E-value=0.0098 Score=54.84 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++|+|++|||||++++.+...+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 310
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.60 E-value=0.0091 Score=56.79 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=33.8
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc--ceEEEeC
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH--FGLLSLP 553 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~--f~vi~i~ 553 (583)
-+++||||--.+.. ++.-.+.++.+++ .+..+||+..... ..++-+++.+| +.++.+.
T Consensus 97 ~liviDEIG~mEl~---~~~F~~~v~~~l~---------------s~~~vi~vv~~~~--~~~~l~~i~~~~~~~i~~vt 156 (168)
T PF03266_consen 97 DLIVIDEIGKMELK---SPGFREAVEKLLD---------------SNKPVIGVVHKRS--DNPFLEEIKRRPDVKIFEVT 156 (168)
T ss_dssp HEEEE---STTCCC----CHHHHHHHHHHC---------------TTSEEEEE--SS----SCCHHHHHTTTTSEEEE--
T ss_pred CEEEEeccchhhhc---CHHHHHHHHHHHc---------------CCCcEEEEEecCC--CcHHHHHHHhCCCcEEEEeC
Confidence 37788998654433 2334566666665 1344677755431 24577788887 7888887
Q ss_pred CCCHHHH
Q psy17974 554 SPTEDTL 560 (583)
Q Consensus 554 ~p~~~sl 560 (583)
.-+.+.+
T Consensus 157 ~~NRd~l 163 (168)
T PF03266_consen 157 EENRDAL 163 (168)
T ss_dssp TTTCCCH
T ss_pred hhHHhhH
Confidence 7665544
No 311
>PRK10536 hypothetical protein; Provisional
Probab=95.59 E-value=0.033 Score=56.40 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHh-hcccCCceEEEEEecc
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNK-LLASNTWAALTINFSA 445 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~-l~~~~~~~~~~i~fS~ 445 (583)
+.....++..+ ..+..|+++||+|||||+++.+++.. +. ...+..+.+.-+.
T Consensus 61 n~~Q~~~l~al-~~~~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~ 113 (262)
T PRK10536 61 NEAQAHYLKAI-ESKQLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPV 113 (262)
T ss_pred CHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCC
Confidence 34444455544 45679999999999999999988663 32 2346666554333
No 312
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.56 E-value=0.012 Score=47.18 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=20.0
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++|++|+|||++++.+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998875
No 313
>PRK14530 adenylate kinase; Provisional
Probab=95.53 E-value=0.014 Score=57.65 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++++||||||||++++.+++.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998876
No 314
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.34 Score=50.46 Aligned_cols=140 Identities=11% Similarity=0.144 Sum_probs=80.4
Q ss_pred HHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhc-------ccCCceEEEEEec--c-CCChHHHHHHHHhhhhhhc
Q psy17974 398 IMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLL-------ASNTWAALTINFS--A-QTSSARTQEILEGKLDKRT 464 (583)
Q Consensus 398 ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~-------~~~~~~~~~i~fS--~-~Tt~~~lq~~ie~~l~~~~ 464 (583)
.++..++.| +-.|++|+.|.||+.+++.+++.+. ..+.+....+.+. . ..+.+++...++. +
T Consensus 7 ~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~-~---- 81 (299)
T PRK07132 7 FLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINK-L---- 81 (299)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHH-h----
Confidence 345555554 4557999999999999999988761 1111111112222 2 2333444433211 1
Q ss_pred CccccC-CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhh
Q psy17974 465 KTLLGA-PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRF 543 (583)
Q Consensus 465 ~~~~~p-~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rl 543 (583)
.+.| ..|.+=|++|||.+.-. .+ +...|.-.+|. + ..++.+|-.++.+ ..+-+-+
T Consensus 82 --~~~~~~~~~~KvvII~~~e~m~-----~~-a~NaLLK~LEE-----P-------p~~t~~il~~~~~----~kll~TI 137 (299)
T PRK07132 82 --YFSSFVQSQKKILIIKNIEKTS-----NS-LLNALLKTIEE-----P-------PKDTYFLLTTKNI----NKVLPTI 137 (299)
T ss_pred --ccCCcccCCceEEEEecccccC-----HH-HHHHHHHHhhC-----C-------CCCeEEEEEeCCh----HhChHHH
Confidence 1233 22455578899964322 22 23334444442 1 2345566555444 3688889
Q ss_pred hccceEEEeCCCCHHHHHHHHHH
Q psy17974 544 VRHFGLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 544 lr~f~vi~i~~p~~~sl~~I~~~ 566 (583)
.+|+.++.+.+++.+.+......
T Consensus 138 ~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 138 VSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HhCeEEEECCCCCHHHHHHHHHH
Confidence 99999999999999998866554
No 315
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.51 E-value=0.026 Score=57.75 Aligned_cols=33 Identities=39% Similarity=0.456 Sum_probs=25.9
Q ss_pred HHHHHh-cCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 399 MEKLLL-VNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 399 l~~~l~-~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+..++. .+..++++||+|||||+++++++..+.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 344444 455799999999999999999988763
No 316
>PHA00729 NTP-binding motif containing protein
Probab=95.51 E-value=0.01 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++++|+||||||+++..++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998865
No 317
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.50 E-value=0.012 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|+-++|+|+||||||++++.+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999998865
No 318
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.49 E-value=0.025 Score=55.22 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=35.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG 458 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~ 458 (583)
|.-++++||||||||+++..++.... ..+..++++.+-. .++..+.+..++
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~e~-~~~~rl~~~~~~ 62 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDTEG-LSPERFKQIAED 62 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECCC-CCHHHHHHHHHh
Confidence 45689999999999999998876542 2244566666643 466666665443
No 319
>KOG1808|consensus
Probab=95.49 E-value=0.0074 Score=74.75 Aligned_cols=158 Identities=20% Similarity=0.193 Sum_probs=106.4
Q ss_pred chhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 390 IDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 390 ~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
+++.-+.+.+-......+|+++.|+||+|||.++.++.... ++..+.+|.|-+|.-..+- |...
T Consensus 1030 ~t~~~nl~~~l~~~~l~~p~~leg~sg~gktsl~~~l~~~~----G~~~~r~nl~~qtdl~dl~------------g~~~ 1093 (1856)
T KOG1808|consen 1030 PTTSENLRRVLRALGLPKPILLEGESGSGKTSLVLALGRLT----GKWTIRLNLSDQTDLADLF------------GSDV 1093 (1856)
T ss_pred hHHHHHHHHHHHhccCCccccccCCCCCCccchhhhhhhhc----ccceeccccccccccchhc------------CccC
Confidence 33444555555666678999999999999999999988864 4456668888888643322 1122
Q ss_pred CCCCCeEEEEecCCCCCCccc--CCCCChHHHHHHHHHhCCe-ee-cCCCeeEeecCeEEEEecCCC--CCCCCCCChhh
Q psy17974 470 APLGKRLAVFVDDVNMPKLET--YGAQPPIELLRQFLDFGGL-YD-RDKMFWKTLQDVVLCTACAPP--GGGRMPLTPRF 543 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~--yg~q~~lElLRq~ld~~g~-yd-~~~~~~~~i~~i~~iaa~~p~--~~gr~~l~~Rl 543 (583)
|-.+.- -.|...-..++ -.+|.++|-|....||.+= |- .-+..|..-.+..+.|+-||. +|||+.++..+
T Consensus 1094 pve~~~----~~d~ell~a~~~~l~sqsv~Eglna~~D~R~e~~i~El~~~~~~~~~~~~fa~~npd~q~g~r~~lp~sf 1169 (1856)
T KOG1808|consen 1094 PVEGEE----WEDSELLAADKNGLASQSVLEGLNACLDHRNEVFIAELDRSFKLPTDERIFACDNPDVQGGGRNGLPESF 1169 (1856)
T ss_pred CCCCcc----ccccHHHhhhhccccchhhhhchhHhhhhhhhhhhhhhhhccccCCcccchhccCcchhccCccCCcchh
Confidence 221111 11222211221 2367889988888887653 43 235577766777888888885 48999999999
Q ss_pred hccceEEEeCCCCHHHHHHHHHHH
Q psy17974 544 VRHFGLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 544 lr~f~vi~i~~p~~~sl~~I~~~~ 567 (583)
..+|..+++.....+.+..|....
T Consensus 1170 ~nrf~~~~~~~~~~~d~~~~~~~~ 1193 (1856)
T KOG1808|consen 1170 INRFPDVFMNDLYEEDILIILFDV 1193 (1856)
T ss_pred hhhhhhhhcccccccccceecccc
Confidence 999999999888887776655443
No 320
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.49 E-value=0.02 Score=51.58 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
|.+....+...+..+.-|+|.|+=|+|||++++.+++.+.
T Consensus 1 T~~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 1 TIRLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3455566677788899999999999999999999999873
No 321
>PRK14532 adenylate kinase; Provisional
Probab=95.48 E-value=0.013 Score=56.33 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=21.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++++||||||||++++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998865
No 322
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.47 E-value=0.026 Score=57.40 Aligned_cols=52 Identities=25% Similarity=0.222 Sum_probs=37.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
+..|..+|++|+||||||+++.+++.+.. .++..++.+.++. ++..+.+...
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e--~~~~l~~~~~ 71 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGA-REGEPVLYVSTEE--SPEELLENAR 71 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHH-hcCCcEEEEEecC--CHHHHHHHHH
Confidence 44678999999999999999999987753 3345566665544 5666665543
No 323
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.46 E-value=0.014 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++||||||||++++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998865
No 324
>PRK07261 topology modulation protein; Provisional
Probab=95.46 E-value=0.011 Score=56.21 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++++|+||||||++++.+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987764
No 325
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.41 E-value=0.014 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...+|+||+|+|||+++.++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999887655
No 326
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.39 E-value=0.017 Score=61.63 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=27.6
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.+.+...+..|+++||+|||||+++++++..+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 455555577899999999999999999998765
No 327
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.35 E-value=0.02 Score=52.56 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=25.6
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
++++||||+|||+++..++..... .+-.+..+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 689999999999999999876632 23345555443
No 328
>PRK03839 putative kinase; Provisional
Probab=95.35 E-value=0.016 Score=55.38 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=21.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|+|+||||||++++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 329
>KOG0741|consensus
Probab=95.34 E-value=0.013 Score=63.95 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=39.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh-hhhh---hcCccccCCCCCeEEEEecC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG-KLDK---RTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~-~l~~---~~~~~~~p~~gk~~vlfiDD 482 (583)
..|||.||||||||+++..++.. +.+..+.+ .+|+++.++-|+ ++.. .-...|. ..-.|+.+||
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKi-----iSpe~miG~sEsaKc~~i~k~F~DAYk---S~lsiivvDd 606 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALS----SDFPFVKI-----ISPEDMIGLSESAKCAHIKKIFEDAYK---SPLSIIVVDD 606 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhh----cCCCeEEE-----eChHHccCccHHHHHHHHHHHHHHhhc---CcceEEEEcc
Confidence 37899999999999999988874 24555544 233443333332 1211 1112222 2234888999
Q ss_pred CCC
Q psy17974 483 VNM 485 (583)
Q Consensus 483 ln~ 485 (583)
|-.
T Consensus 607 iEr 609 (744)
T KOG0741|consen 607 IER 609 (744)
T ss_pred hhh
Confidence 854
No 330
>PRK14531 adenylate kinase; Provisional
Probab=95.34 E-value=0.013 Score=56.26 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++++||||||||++++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998875
No 331
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.33 E-value=0.012 Score=56.01 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|+.+.|+||+|||||++++.++...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 5678999999999999999988754
No 332
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.29 E-value=0.013 Score=56.53 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|..+.|+||+|||||++++.++..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 5689999999999999999987754
No 333
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.28 E-value=0.023 Score=53.56 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=25.3
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..+++. +-++|+|++|+|||++++.++..
T Consensus 29 l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 29 LKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 4455555 89999999999999999999875
No 334
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.28 E-value=0.018 Score=54.79 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
...+.-++++|++|||||++++.+...+.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999999988773
No 335
>PRK13947 shikimate kinase; Provisional
Probab=95.28 E-value=0.017 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=21.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++|+|+||||||++++.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999877
No 336
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.27 E-value=0.077 Score=55.64 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc-ccCC-----CCCeEEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTL-LGAP-----LGKRLAVF 479 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~-~~p~-----~gk~~vlf 479 (583)
.+.+.|.|+-|+|||+|+..+...++... -..++|.. +..-+-..+.+.+|.. ..|+ .+.--|+.
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~---k~R~HFh~------FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLC 135 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLPGER---KRRLHFHR------FMARVHQRLHTLQGQTDPLPPIADELAAETRVLC 135 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCCccc---cccccHHH------HHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEE
Confidence 47899999999999999999998874221 12333332 2222333443333322 1122 12233677
Q ss_pred ecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-CC-CCCCCCh--------hhhccceE
Q psy17974 480 VDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GG-GRMPLTP--------RFVRHFGL 549 (583)
Q Consensus 480 iDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-~~-gr~~l~~--------Rllr~f~v 549 (583)
+||+..-... .+--.--|++.++. .+|.+|||.|.+ .. +++-+.. -+.+||.|
T Consensus 136 fDEF~VtDI~--DAMiL~rL~~~Lf~---------------~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v 198 (367)
T COG1485 136 FDEFEVTDIA--DAMILGRLLEALFA---------------RGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEV 198 (367)
T ss_pred eeeeeecChH--HHHHHHHHHHHHHH---------------CCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEE
Confidence 8998763321 11112245556654 358899999964 21 2222222 23579999
Q ss_pred EEeCCC
Q psy17974 550 LSLPSP 555 (583)
Q Consensus 550 i~i~~p 555 (583)
++++.|
T Consensus 199 ~~vD~~ 204 (367)
T COG1485 199 VNVDGP 204 (367)
T ss_pred EEecCC
Confidence 999998
No 337
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.27 E-value=0.014 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-++++||+|||||++++.++..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457999999999999999887765
No 338
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.24 E-value=0.016 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+++|++|+|||++++.++..-
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 339
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.23 E-value=0.025 Score=57.97 Aligned_cols=45 Identities=22% Similarity=0.472 Sum_probs=32.9
Q ss_pred eeeCchhhhHHHHHHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 386 MVPTIDTIRFGSIMEKLLLVNH-PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 386 ~VpT~dt~r~~~ll~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-|||.+-...-.++..++...+ =||+.||+|||||+++.+++..+
T Consensus 104 ~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 104 KIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred cCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHH
Confidence 3556555555555666666655 56888999999999999988766
No 340
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.23 E-value=0.034 Score=58.28 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+++.+++++++|++|+|||+++++++.-.
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~I 167 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDFI 167 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 78889999999999999999999999998765
No 341
>PRK00625 shikimate kinase; Provisional
Probab=95.23 E-value=0.019 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++|+|.||||||++++.+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 342
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.22 Score=51.50 Aligned_cols=133 Identities=11% Similarity=0.121 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccC-----------Cc-eEEEEEeccC----CChHHHHHH
Q psy17974 394 RFGSIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASN-----------TW-AALTINFSAQ----TSSARTQEI 455 (583)
Q Consensus 394 r~~~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----------~~-~~~~i~fS~~----Tt~~~lq~~ 455 (583)
.+..+...+-.. .+..|++||.|+||+.++..+++.+.-.. .+ .+..+ +... .+.+++..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i-~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEF-SPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEE-ecCCCCCcCcHHHHHHH
Confidence 344444443332 35789999999999999998887652100 00 11111 1111 123333222
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
...+. +.|..|++=|++||+.+.-..+ ....+|+-+=| + ..++.|+-.++.+.
T Consensus 84 -~~~~~------~~p~e~~~kv~ii~~ad~mt~~-----AaNaLLK~LEE------P-------p~~~~fiL~~~~~~-- 136 (290)
T PRK05917 84 -KKQIW------IHPYESPYKIYIIHEADRMTLD-----AISAFLKVLED------P-------PQHGVIILTSAKPQ-- 136 (290)
T ss_pred -HHHHh------hCccCCCceEEEEechhhcCHH-----HHHHHHHHhhc------C-------CCCeEEEEEeCChh--
Confidence 12222 3455566667889998765543 34556654433 1 23556666655554
Q ss_pred CCCCChhhhccceEEEeCCCC
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPT 556 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~ 556 (583)
.+.|-+.+|+.++.++.+.
T Consensus 137 --~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 137 --RLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred --hCcHHHHhcceEEEccchh
Confidence 6888999999999998653
No 343
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.22 E-value=0.02 Score=61.36 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++.++..+..++++||+|||||++++++++.+
T Consensus 140 ~~~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 140 DLFNSLLPAAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666677789999999999999999998765
No 344
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.21 E-value=0.029 Score=59.42 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
...++..++..+.+++++|++|+|||++++.++..+.
T Consensus 167 ~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~ 203 (340)
T TIGR03819 167 VARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVA 203 (340)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCC
Confidence 3466788899999999999999999999999887663
No 345
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.21 E-value=0.014 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++||+|||||++++.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4799999999999999988875
No 346
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.20 E-value=0.034 Score=54.29 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=25.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
-++|+||+|+|||+++-.++..+... +..+..++..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D 38 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISAD 38 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCC
Confidence 47999999999999998887765323 5555555543
No 347
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.17 E-value=0.014 Score=56.37 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=23.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++.++|+||+|+|||++++.+++..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998864
No 348
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.017 Score=55.55 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=21.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++.||||+||||+++.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 349
>PRK06762 hypothetical protein; Provisional
Probab=95.14 E-value=0.017 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-++++|+||||||++++.+.+.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998876
No 350
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.14 E-value=0.076 Score=50.96 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEE---EEEeccC---CChHHHHHHHHhhhhhhcCccccCCCCCeE
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAAL---TINFSAQ---TSSARTQEILEGKLDKRTKTLLGAPLGKRL 476 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~---~i~fS~~---Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~ 476 (583)
+..|.-+.|+||+|+|||++++.++.-+...++...+ .+.+-.+ .+..+-|++--.+.- ..++-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral----------~~~p~ 91 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAAL----------LRNAT 91 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHH----------hcCCC
Confidence 4678899999999999999999887644222221111 1222222 222333322111111 12234
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
++++||-- ...|....+.+.++|+++...+
T Consensus 92 lllLDEPt-s~LD~~~~~~l~~~l~~~~~~~ 121 (177)
T cd03222 92 FYLFDEPS-AYLDIEQRLNAARAIRRLSEEG 121 (177)
T ss_pred EEEEECCc-ccCCHHHHHHHHHHHHHHHHcC
Confidence 78899953 3445444445677888776543
No 351
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.14 E-value=0.023 Score=57.24 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.0
Q ss_pred EEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC
Q psy17974 411 FTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS 448 (583)
Q Consensus 411 L~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt 448 (583)
++||+|||||++++.+.+-+. ..+..+..+|+-+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~-~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE-SNGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT-TT-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHH-hccCCceEEEcchHhc
Confidence 589999999999998877653 3456788888877653
No 352
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.036 Score=53.61 Aligned_cols=66 Identities=20% Similarity=0.304 Sum_probs=42.6
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEE
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlf 479 (583)
++-+.+|.-|.+.||+|||||++.+-++--.. +.. -.+.+ .+.....|++.+.|+|
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~-G~i~l----------------------~~r~i~gPgaergvVF 80 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSR-GSIQL----------------------NGRRIEGPGAERGVVF 80 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-ccc-ceEEE----------------------CCEeccCCCccceeEe
Confidence 34477899999999999999999876554321 110 11111 1112224667788999
Q ss_pred ecCCCCCCcc
Q psy17974 480 VDDVNMPKLE 489 (583)
Q Consensus 480 iDDln~p~~d 489 (583)
=+|-=+|..+
T Consensus 81 Q~~~LlPWl~ 90 (259)
T COG4525 81 QNEALLPWLN 90 (259)
T ss_pred ccCccchhhH
Confidence 9998887644
No 353
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.12 E-value=0.016 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=19.7
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++|+||||||++++.+...+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999988764
No 354
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.07 E-value=0.04 Score=54.60 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=35.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
.|.-++++||||+|||+++.+++.+.. ..+..++++.+- ..++..++++.+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~yi~~e-~~~~~r~~~~~~ 72 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIYIDTE-GLSPERFKQIAG 72 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEECC-CCCHHHHHHHHh
Confidence 356789999999999999999887552 234556666655 455566655544
No 355
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.06 E-value=0.017 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-++++||||||||++++.++..+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 356
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.05 E-value=0.023 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+++||||||||++++.+.+.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999988864
No 357
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.05 E-value=0.081 Score=61.95 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEE
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALT 440 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~ 440 (583)
..+..++.++.-++|.|+||||||++++.+...+. ..++.+..
T Consensus 359 ~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~-~~g~~V~~ 401 (744)
T TIGR02768 359 EAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWE-AAGYRVIG 401 (744)
T ss_pred HHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEE
Confidence 34555666667789999999999999999876552 23454443
No 358
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.01 E-value=0.059 Score=53.04 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHhc----CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 399 MEKLLLV----NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 399 l~~~l~~----~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
++.++.. |.-++++|+||||||+++.+++.... ..+..++++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEE
Confidence 4445544 45589999999999999999887652 2234455554
No 359
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.99 E-value=0.015 Score=56.61 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=23.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|.-+.|+||+|||||++++.++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 457889999999999999999998865
No 360
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.97 E-value=0.018 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+.++|+||+|||||+|++.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46899999999999999987653
No 361
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.94 E-value=0.038 Score=63.15 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=29.4
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+...+..+.+++++||||||||++++.+++.+.
T Consensus 42 ~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 42 VIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred HHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4556677888999999999999999999988773
No 362
>PRK10646 ADP-binding protein; Provisional
Probab=94.92 E-value=0.04 Score=51.52 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 391 DTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 391 dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+|.+....+...+..|.-|+|.|+=|+|||++++.+++.+.
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46777777778888888899999999999999999999884
No 363
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.91 E-value=0.028 Score=51.77 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=24.7
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
|.++|+.|||||++++.+++.+. ..++.+..+
T Consensus 3 v~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~i 34 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIRKLINELK-RRGYRVAVI 34 (140)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH-HTT--EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHh-HcCCceEEE
Confidence 68999999999999999999884 446665533
No 364
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.89 E-value=0.02 Score=55.03 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=22.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++++|+||+|+||+++++.++...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5799999999999999999998864
No 365
>PRK13949 shikimate kinase; Provisional
Probab=94.89 E-value=0.021 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=21.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++|+|++|+|||++++.+.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 369999999999999999988876
No 366
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.89 E-value=0.044 Score=60.89 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=27.1
Q ss_pred HHHHHHhcCCc-eEEEccCCCcHHHHHHHHHHhhc
Q psy17974 398 IMEKLLLVNHP-VMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 398 ll~~~l~~~~~-vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+..++..++. ++++||+|||||++++++++.+.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 44556666555 78999999999999999988773
No 367
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.89 E-value=0.021 Score=52.26 Aligned_cols=23 Identities=26% Similarity=0.689 Sum_probs=20.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++.|+||+|||||++++.+++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998865
No 368
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.88 E-value=0.077 Score=57.98 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhc-ccCCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLL-ASNTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~-~~~~~~~~~i~fS~ 445 (583)
.+..++++||+|+|||+++..++..+. ...+..+..+++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 467899999999999999988876552 12345666666544
No 369
>PLN02772 guanylate kinase
Probab=94.87 E-value=0.046 Score=58.57 Aligned_cols=25 Identities=24% Similarity=0.671 Sum_probs=22.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++++|+||+|+||+++++.++...
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhc
Confidence 5689999999999999999998764
No 370
>KOG2543|consensus
Probab=94.87 E-value=0.19 Score=53.29 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=72.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhh---h---hcCc--------c--cc--
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD---K---RTKT--------L--LG-- 469 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~---~---~~~~--------~--~~-- 469 (583)
+|+|.|.+|||||.+++++++.. +...+.+|+=..-+...+...|..++. + ..++ + |.
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~ 107 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQW 107 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhh
Confidence 45999999999999999999976 223445555444454444333333331 0 0111 0 10
Q ss_pred CC---CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhh--h
Q psy17974 470 AP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRF--V 544 (583)
Q Consensus 470 p~---~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rl--l 544 (583)
|. .++..++++|.++.-. .+++.. |.++++-.-.-+ ...+.++-...++. .... +
T Consensus 108 ~~~t~~d~~~~liLDnad~lr--D~~a~l----l~~l~~L~el~~--------~~~i~iils~~~~e------~~y~~n~ 167 (438)
T KOG2543|consen 108 PAATNRDQKVFLILDNADALR--DMDAIL----LQCLFRLYELLN--------EPTIVIILSAPSCE------KQYLINT 167 (438)
T ss_pred HHhhccCceEEEEEcCHHhhh--ccchHH----HHHHHHHHHHhC--------CCceEEEEeccccH------HHhhccc
Confidence 11 2457888999987654 234432 222222111111 11233333222211 1112 1
Q ss_pred ccc--eEEEeCCCCHHHHHHHHHHH
Q psy17974 545 RHF--GLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 545 r~f--~vi~i~~p~~~sl~~I~~~~ 567 (583)
.++ .++++|.++.+++.+|++.-
T Consensus 168 g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 168 GTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CCCCceEEecCCCCHHHHHHHHhcC
Confidence 233 36899999999999998753
No 371
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.87 E-value=0.056 Score=53.72 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=33.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccC-----CceEEEEEeccCCChHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASN-----TWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
.|.-+.|+||||||||+++.+++.....+. ...++.+......++..+.++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~ 74 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIA 74 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHH
Confidence 456789999999999999998875431121 2345566554433455554443
No 372
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.81 E-value=0.027 Score=56.84 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=20.4
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|+|+|+||||||++++.+.+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998876
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.81 E-value=0.031 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.800 Sum_probs=20.3
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++|+||||||++++.+...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998876
No 374
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.80 E-value=0.041 Score=54.51 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
.|.-+|+.||||||||+++.+++.+-....+-.++.+. ...++..+.+.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs--~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS--FEEPPEELIENMK 68 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE--SSS-HHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE--ecCCHHHHHHHHH
Confidence 35688999999999999999876432111022344444 4456666655543
No 375
>PRK08233 hypothetical protein; Provisional
Probab=94.80 E-value=0.022 Score=54.00 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|.+.|+||||||++++.++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 456788999999999999999876
No 376
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.76 E-value=0.047 Score=53.57 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
+......++.+. ...-|.+.||+|||||.++-+.+..+-....|.-+.+.-+
T Consensus 6 ~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 6 NEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRP 57 (205)
T ss_dssp SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-
T ss_pred CHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 455666777777 6778999999999999998876543322344544444433
No 377
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.75 E-value=0.051 Score=52.44 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=29.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T 447 (583)
.|-+.||||||||+++..+++.+. ++|....|..--.|
T Consensus 15 ~i~v~Gp~GSGKTaLie~~~~~L~--~~~~~aVI~~Di~t 52 (202)
T COG0378 15 RIGVGGPPGSGKTALIEKTLRALK--DEYKIAVITGDIYT 52 (202)
T ss_pred EEEecCCCCcCHHHHHHHHHHHHH--hhCCeEEEeceeec
Confidence 356789999999999999999884 34666666665555
No 378
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.73 E-value=0.019 Score=50.34 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.0
Q ss_pred hcCCceEEEccCCCcHHHHHHHHH
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
..+.-+.|.||+|||||++++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456789999999999999999876
No 379
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.70 E-value=0.088 Score=61.40 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=24.9
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+. .++-++|.|+||||||++++.++..+
T Consensus 332 i~~~~-~~~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 332 LDTAI-QHKVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred HHHHH-hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44444 45689999999999999999988766
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.69 E-value=0.14 Score=52.15 Aligned_cols=51 Identities=29% Similarity=0.289 Sum_probs=33.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..|.-+++.||||+|||+++.+++.......+..+..+ |...++..+..-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i--S~E~~~~~~~~r 77 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI--SLEEPVVRTARR 77 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE--EcccCHHHHHHH
Confidence 445778899999999999999988765422224455554 444455554433
No 381
>PRK10436 hypothetical protein; Provisional
Probab=94.67 E-value=0.06 Score=59.39 Aligned_cols=31 Identities=39% Similarity=0.398 Sum_probs=25.2
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+-..+.-+|++||+|||||+++.+++..+.
T Consensus 213 ~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 213 ALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred HHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 3334566799999999999999999888763
No 382
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.65 E-value=0.024 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.++.++|+||+|||||++++.+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 356789999999999999998865
No 383
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.64 E-value=0.052 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++++||+|+|||..+-.++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 478999999999999888776654
No 384
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.64 E-value=0.016 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHH
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSI 426 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~ 426 (583)
.-+..|.-|.++||+|||||++++.+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHH
Confidence 33567889999999999999999865
No 385
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.63 E-value=0.055 Score=59.28 Aligned_cols=33 Identities=33% Similarity=0.423 Sum_probs=25.7
Q ss_pred HHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 399 MEKLLLVNH-PVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 399 l~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+..++...+ =+|+.||+|||||+++.++++.+.
T Consensus 250 ~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 250 LLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred HHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 444455444 568899999999999999999873
No 386
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.61 E-value=0.028 Score=53.52 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=22.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+++|+||+|+|||++++.++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5689999999999999999998865
No 387
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.58 E-value=0.019 Score=51.84 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..+.++||+|||||++++.++...
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 3467889999999999999999887654
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.52 E-value=0.058 Score=51.04 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=27.4
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
++++||||+|||+++.+++..+. ..+..+..+.+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCC
Confidence 68999999999999999887763 23455666665543
No 389
>PRK06217 hypothetical protein; Validated
Probab=94.51 E-value=0.028 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+|.|++|||||++++.+.+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998876
No 390
>KOG0060|consensus
Probab=94.48 E-value=0.024 Score=62.62 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=25.2
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+..-+..|+++|++||+|||||++.+.+..
T Consensus 454 Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 454 LSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred eeeEecCCCeEEEECCCCCchhHHHHHHhc
Confidence 344567899999999999999999997753
No 391
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.48 E-value=0.046 Score=56.44 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=29.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~ 445 (583)
.+..++|+||+|+|||+++..++..+... ..+.+..+.+-.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 45678999999999999999888765322 235666666544
No 392
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.45 E-value=0.1 Score=55.95 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.5
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
..+.++.+.||.|||||.+++.+...+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4677999999999999999999887763
No 393
>PRK14527 adenylate kinase; Provisional
Probab=94.45 E-value=0.023 Score=54.87 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-++++||||||||++++.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45568999999999999999988765
No 394
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.45 E-value=0.067 Score=60.64 Aligned_cols=34 Identities=38% Similarity=0.410 Sum_probs=26.3
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+.+.+-..+-.||++||+|||||+++.++++.+.
T Consensus 308 l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 308 FLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred HHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 3334444566789999999999999999888763
No 395
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.44 E-value=0.033 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.2
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++|++|||||++++.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999876
No 396
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.42 E-value=0.03 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+.||++||+|+|||+++..++..
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999999888874
No 397
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.42 E-value=0.032 Score=49.00 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=19.0
Q ss_pred eEEEccCCCcHHHHHHHHHH
Q psy17974 409 VMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~ 428 (583)
|+++|+||+|||+++++++.
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999986
No 398
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.41 E-value=0.037 Score=54.32 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++++||||||||++++.+.+.+
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 37999999999999999988765
No 399
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.41 E-value=0.076 Score=50.79 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=26.9
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
|.+.|++|||||++++.+.+.+. ..++.++.+.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~-~~g~~v~~~~~ 36 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE-ARGYEVVLTRE 36 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeC
Confidence 67999999999999999988873 44566655544
No 400
>KOG1942|consensus
Probab=94.40 E-value=0.042 Score=55.97 Aligned_cols=33 Identities=15% Similarity=0.345 Sum_probs=27.5
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHh
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l 568 (583)
-+-+++.++.|..+|..-..+++++.+|...-.
T Consensus 348 PhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra 380 (456)
T KOG1942|consen 348 PHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRA 380 (456)
T ss_pred CCCCCHHHhhheeEEeeccCCHHHHHHHHHHHH
Confidence 466899999999999888889999998876543
No 401
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.39 E-value=0.037 Score=55.34 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++|.||||||||++++.+++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998865
No 402
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=94.39 E-value=0.16 Score=49.66 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=65.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.-++|+|+.|+|||+.++.+.... -.-.+ .. .+..+....+ . ...++.+||+..-
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~------~~d~~--~~-~~~kd~~~~l----~------------~~~iveldEl~~~ 107 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY------FSDSI--ND-FDDKDFLEQL----Q------------GKWIVELDELDGL 107 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh------ccCcc--cc-CCCcHHHHHH----H------------HhHheeHHHHhhc
Confidence 456899999999999999874332 11011 11 1112221111 1 1357889998764
Q ss_pred CcccCCCCChHHHHHHHHHhCCee-ecC-CCeeE-eecCeEEEEecCCCCCCCCCCChhhhccceEEEeCC
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLY-DRD-KMFWK-TLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPS 554 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~y-d~~-~~~~~-~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~ 554 (583)
.. .-.+.|+.++....-. .+. ..... ......|+||+|... .--++-=-|||-+|.+..
T Consensus 108 ~k------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~---~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 108 SK------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD---FLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred ch------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc---eeeCCCCCeEEEEEEEcC
Confidence 42 2368899988765433 222 12222 335678899998754 111222347888888876
No 403
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.37 E-value=0.13 Score=61.44 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=30.0
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.+..++..+.-+++.|++|||||++++.+..... ..++.++.+
T Consensus 354 Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e-~~G~~V~~~ 396 (988)
T PRK13889 354 ALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWE-AAGYEVRGA 396 (988)
T ss_pred HHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEe
Confidence 4556666566788999999999999987765442 335555443
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.046 Score=54.06 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=28.5
Q ss_pred HHHHHHhcCC-ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 398 IMEKLLLVNH-PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 398 ll~~~l~~~~-~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++..+.+++. +.|+.||||||||++++.+++.+
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHh
Confidence 6777777776 69999999999999999998865
No 405
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.36 E-value=0.083 Score=52.82 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=31.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+..|.-+++.||+|||||+++.+++.... +.+.....+. ..-++.++.+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~--~e~~~~~~~~ 69 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVS--TQLTTTEFIK 69 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEe--CCCCHHHHHH
Confidence 45577899999999999999877766542 2234455554 3334444433
No 406
>PRK02496 adk adenylate kinase; Provisional
Probab=94.36 E-value=0.031 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++.||||||||++++.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988765
No 407
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.36 E-value=0.046 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.0
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|.++|+||||||++++.+...+
T Consensus 2 i~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999988876
No 408
>KOG0922|consensus
Probab=94.35 E-value=0.41 Score=53.89 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=85.9
Q ss_pred hHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc-ccCCc-----------------------------eEEEEEe
Q psy17974 394 RFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL-ASNTW-----------------------------AALTINF 443 (583)
Q Consensus 394 r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~-~~~~~-----------------------------~~~~i~f 443 (583)
.+..=+-..++.++-++++|++|||||+-+=+++.+-. ..++. .-..|.|
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 34444556677899999999999999998877765421 00010 1112222
Q ss_pred ccCCChHH-----HHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeE
Q psy17974 444 SAQTSSAR-----TQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWK 518 (583)
Q Consensus 444 S~~Tt~~~-----lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~ 518 (583)
-..|+.+. +.+++.+.+ ...|--.+..||.|||.|-=... +.-.+-+||.++...
T Consensus 134 ed~ts~~TrikymTDG~LLRE~------l~Dp~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R----------- 193 (674)
T KOG0922|consen 134 EDSTSKDTRIKYMTDGMLLREI------LKDPLLSKYSVIILDEAHERSLH---TDILLGLLKKILKKR----------- 193 (674)
T ss_pred cccCCCceeEEEecchHHHHHH------hcCCccccccEEEEechhhhhhH---HHHHHHHHHHHHhcC-----------
Confidence 22222110 000000000 01244567778999998853221 234678899887633
Q ss_pred eecCeEEE--Ee-cCCCC-----CC--CCCCChhhhccce--EEEeCCCCHHHHHHHHHHHhcccccCCCcccc
Q psy17974 519 TLQDVVLC--TA-CAPPG-----GG--RMPLTPRFVRHFG--LLSLPSPTEDTLKVIFKVRTSPGKQEGTSSIL 580 (583)
Q Consensus 519 ~i~~i~~i--aa-~~p~~-----~g--r~~l~~Rllr~f~--vi~i~~p~~~sl~~I~~~~l~~~l~~~~~~~~ 580 (583)
.+..+| .| .+-.- ++ -..++- |.|. +++.+.|..+-+...+.++++-|+.+..-+|+
T Consensus 194 --~~LklIimSATlda~kfS~yF~~a~i~~i~G---R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDIL 262 (674)
T KOG0922|consen 194 --PDLKLIIMSATLDAEKFSEYFNNAPILTIPG---RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDIL 262 (674)
T ss_pred --CCceEEEEeeeecHHHHHHHhcCCceEeecC---CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEE
Confidence 122222 22 11100 00 001111 2343 58888899999999888888888776554544
No 409
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.33 E-value=0.13 Score=52.42 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=23.8
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHH
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
...+.+..|+||.||+|.|||.+++.+-
T Consensus 202 rva~rsr~p~ll~gptgagksflarriy 229 (531)
T COG4650 202 RVAIRSRAPILLNGPTGAGKSFLARRIY 229 (531)
T ss_pred HHHhhccCCeEeecCCCcchhHHHHHHH
Confidence 3456778999999999999999998764
No 410
>PRK14528 adenylate kinase; Provisional
Probab=94.33 E-value=0.034 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.+++.||||||||++++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999887765
No 411
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.30 E-value=0.095 Score=59.83 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+++.|+||||||+++..++..+
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999887765
No 412
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.25 E-value=0.085 Score=52.89 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=31.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
.|..+|+.||||||||+++.+++.+.. ..+-.++++.+ ..++.++.+-
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~--ee~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVAL--EEHPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEe--eCCHHHHHHH
Confidence 467899999999999999998876421 12334444443 4566665543
No 413
>PLN02674 adenylate kinase
Probab=94.22 E-value=0.052 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...++|.||||||||+.++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999888865
No 414
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.20 E-value=0.041 Score=52.27 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=23.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++.|+|++|+|||++-+.+++.+
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc
Confidence 4689999999999999999999987
No 415
>PRK04040 adenylate kinase; Provisional
Probab=94.20 E-value=0.037 Score=53.59 Aligned_cols=24 Identities=54% Similarity=0.732 Sum_probs=21.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+-++++|+||||||++++.+.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999877
No 416
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.19 E-value=0.069 Score=51.04 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=27.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
+-++|++|||||++++.++..+. ..++.+..|-.+.
T Consensus 9 i~ivG~sgsGKTTLi~~li~~l~-~~g~~vg~Ik~~~ 44 (173)
T PRK10751 9 LAIAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTH 44 (173)
T ss_pred EEEECCCCChHHHHHHHHHHHHh-hcCCeEEEEEEcC
Confidence 57899999999999999998873 3456666665543
No 417
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.16 E-value=0.05 Score=50.35 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=18.4
Q ss_pred EEccCCCcHHHHHHHHHHhh
Q psy17974 411 FTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 411 L~Gp~GtGKT~li~~~l~~l 430 (583)
|.||||||||++++.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999875
No 418
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.15 E-value=0.036 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-++++|+||||||++++.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 47899999999999999998865
No 419
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.14 E-value=0.09 Score=50.61 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
|.-|.+.|++|||||++++.+.+.+. ..++.+..+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~-~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ-ENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeC
Confidence 56689999999999999999998873 33455544443
No 420
>PLN02200 adenylate kinase family protein
Probab=94.14 E-value=0.05 Score=54.59 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-++++||||||||++++.+++.+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999998865
No 421
>PRK06547 hypothetical protein; Provisional
Probab=94.12 E-value=0.041 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=19.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-|++.|++|||||++++.+++.+
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45667999999999999988865
No 422
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.11 E-value=0.033 Score=58.68 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
-++.|.-+.|+||+||||||+++.++-
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356677899999999999999998764
No 423
>PRK04328 hypothetical protein; Provisional
Probab=94.10 E-value=0.11 Score=52.72 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=31.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
.|..+++.||||||||+++.+++.+-. ..+...+.+++ ..++.++.+-
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~--ee~~~~i~~~ 69 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVAL--EEHPVQVRRN 69 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEe--eCCHHHHHHH
Confidence 467899999999999999998876421 22334555544 3466665543
No 424
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.066 Score=50.18 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAAL 439 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~ 439 (583)
-..+.+.|+||+|||+++..++..+. ..+|.+-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~-~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR-EKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH-hcCceee
Confidence 35789999999999999999988773 3334443
No 425
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.08 E-value=0.041 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-|.++|++|||||++++.+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999988876
No 426
>PRK06696 uridine kinase; Validated
Probab=94.06 E-value=0.054 Score=53.74 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
-|.+.|++|||||++++.+...+.
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999998873
No 427
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.02 E-value=0.039 Score=52.09 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=25.4
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..-+..|..+++.||+|||||++.+.++.-.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3445678899999999999999999887643
No 428
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.02 E-value=0.057 Score=55.36 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 395 FGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 395 ~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
...++..+.+.+ ++++++||+|+|||++++.++..+.
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 344455666666 7999999999999999999988763
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.02 E-value=0.066 Score=54.54 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=27.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.|.-++++||||||||+++.+++.+... .+..+.++.+-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEec
Confidence 4677899999999999999988664311 23345555553
No 430
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.02 E-value=0.043 Score=53.21 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.6
Q ss_pred eEEEccCCCcHHHHHHHHHHhh
Q psy17974 409 VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|.|+||+|||||++++.+...+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999987765
No 431
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.00 E-value=0.044 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=20.6
Q ss_pred eEEEccCCCcHHHHHHHHHHhhc
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
|-++||+|||||++++.+...+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999988773
No 432
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.00 E-value=0.058 Score=51.17 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=22.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.++|++|||||++++.+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998876
No 433
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.00 E-value=0.039 Score=51.71 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=17.1
Q ss_pred eEEEccCCCcHHHHHHHHHHh
Q psy17974 409 VMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~ 429 (583)
|.|+|++|||||++++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999998764
No 434
>PRK06851 hypothetical protein; Provisional
Probab=93.98 E-value=0.068 Score=57.02 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T 447 (583)
..+-++|.|+||||||++++.+...+. ..++.+-.+.++..-
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~-~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFL-EKGYDVEFLHCSSDN 70 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEcCCCC
Confidence 345689999999999999999988873 346777666666543
No 435
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.97 E-value=0.043 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.++++|++|+|||++++.++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998753
No 436
>PRK07667 uridine kinase; Provisional
Probab=93.96 E-value=0.084 Score=51.19 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=25.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
.-|-+.|++|||||++++.+...+. ..+..+..+++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~-~~~~~~~~i~~ 53 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK-QEGIPFHIFHI 53 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEEc
Confidence 3568999999999999999988773 22334444443
No 437
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.95 E-value=0.12 Score=51.00 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=34.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccC-----CceEEEEEeccCCChHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASN-----TWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
.|.-+.++||||+|||+++..++....... ...++++.......+..+.++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~ 74 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA 74 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHH
Confidence 467789999999999999998876532121 1455666654444455555443
No 438
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.93 E-value=0.053 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+++||||||||++++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999988865
No 439
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.93 E-value=0.042 Score=51.95 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+.|+|+|++|+|||++++.+...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999998864
No 440
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.91 E-value=0.07 Score=50.02 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=26.6
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
+.++|++|+|||+++..++..+. ..++.+..+-
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~-~~G~~V~viK 34 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALK-ARGYRVATIK 34 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEe
Confidence 56899999999999999999874 3456666664
No 441
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.91 E-value=0.088 Score=55.11 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.....++...+..+.++|++|-+|||||++++++....+
T Consensus 160 ~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 160 RRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred HHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence 345567778888899999999999999999999887663
No 442
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.91 E-value=0.12 Score=51.36 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=30.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSART 452 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~l 452 (583)
+..|..+++.||||+|||+++.+++...... +..++.+ |...+++.+
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~i--s~e~~~~~i 63 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYV--TTEESRESI 63 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEE--EccCCHHHH
Confidence 3457889999999999999999876543222 3334444 444555544
No 443
>PRK05973 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.07 Score=53.61 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=32.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq 453 (583)
+..|.-+++.|+||+|||+++.+++.+.. ..+..++++ |-.-+++++.
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyf--SlEes~~~i~ 108 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFF--TLEYTEQDVR 108 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEE--EEeCCHHHHH
Confidence 45678899999999999999998876432 223344444 4344454544
No 444
>PTZ00301 uridine kinase; Provisional
Probab=93.85 E-value=0.047 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=19.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
=|-+.||||||||++++.+.+.+
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 36789999999999999887665
No 445
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.82 E-value=0.11 Score=59.04 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=24.1
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+...+. +.-++|.|+||||||+++..++..+
T Consensus 154 ~~~al~-~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 154 VALALK-SNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred HHHHhh-CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 333343 5788999999999999999887654
No 446
>PRK01184 hypothetical protein; Provisional
Probab=93.81 E-value=0.062 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+.|+||||||||++++ +++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHc
Confidence 47899999999999876 56554
No 447
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.80 E-value=0.13 Score=53.77 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=35.4
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhccc-----CCceEEEEEeccCCChHHHHHHHH
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLAS-----NTWAALTINFSAQTSSARTQEILE 457 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-----~~~~~~~i~fS~~Tt~~~lq~~ie 457 (583)
..|.-++++||||||||+++.+++.+...+ .+-.+++|..-..-+++.+.+.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 345677999999999999999887553211 012566666554446666665554
No 448
>KOG1968|consensus
Probab=93.79 E-value=0.22 Score=58.81 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=76.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhh----hhcCccccCC---CCCeEEEEe
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD----KRTKTLLGAP---LGKRLAVFV 480 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~----~~~~~~~~p~---~gk~~vlfi 480 (583)
-++++||||.|||+.+......+ ++.++-.|-|..-+...+.+.+..... ...+..++.+ .+...||.+
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~----g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~ 434 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKEL----GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILM 434 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhc----ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEE
Confidence 37999999999999988888765 455655554433222222222211110 0111233322 344568899
Q ss_pred cCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHH
Q psy17974 481 DDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTL 560 (583)
Q Consensus 481 DDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl 560 (583)
||++.+..+. ..-+.-|-+++.. ...-+|++||--. ..-+..+.+.+..++++.|+.+.+
T Consensus 435 devD~~~~~d---Rg~v~~l~~l~~k--------------s~~Piv~~cndr~---~p~sr~~~~~~~~l~f~kP~~~~i 494 (871)
T KOG1968|consen 435 DEVDGMFGED---RGGVSKLSSLCKK--------------SSRPLVCTCNDRN---LPKSRALSRACSDLRFSKPSSELI 494 (871)
T ss_pred eccccccchh---hhhHHHHHHHHHh--------------ccCCeEEEecCCC---CccccchhhhcceeeecCCcHHHH
Confidence 9998765421 2223444444431 1234677787422 233445666667899999998887
Q ss_pred HHHHHHHh
Q psy17974 561 KVIFKVRT 568 (583)
Q Consensus 561 ~~I~~~~l 568 (583)
..=..++.
T Consensus 495 ~~ri~si~ 502 (871)
T KOG1968|consen 495 RSRIMSIC 502 (871)
T ss_pred Hhhhhhhh
Confidence 65444443
No 449
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.79 E-value=0.049 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+|+++|++|+|||++++.+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5899999999999999998654
No 450
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.76 E-value=0.054 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=22.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++++|+|++|||||++++.++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 451
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=93.75 E-value=0.46 Score=55.89 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 396 GSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 396 ~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..=+-..+..++-|+|+|||||||||-+-.++-+
T Consensus 55 ~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle 88 (845)
T COG1643 55 RDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLE 88 (845)
T ss_pred HHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHh
Confidence 3445667888999999999999999988766543
No 452
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=93.74 E-value=0.19 Score=46.72 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHH-HHHhh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARS-ILNKL 430 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~-~l~~l 430 (583)
..+..++ .++++++.||+|+|||..+.- ++..+
T Consensus 6 ~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~ 39 (169)
T PF00270_consen 6 EAIEAII-SGKNVLISAPTGSGKTLAYILPALNRL 39 (169)
T ss_dssp HHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhh
Confidence 4555566 688999999999999998763 34434
No 453
>PRK06851 hypothetical protein; Provisional
Probab=93.70 E-value=0.1 Score=55.78 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T 447 (583)
.+-++|.|+||||||++++.++.... ..++.+...+|+..-
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~dP 254 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGFDP 254 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCCC
Confidence 46789999999999999999988773 457888888887643
No 454
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.69 E-value=0.078 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 455
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.69 E-value=0.21 Score=52.47 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-++++||||||||+++.+++...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999988876654
No 456
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.68 E-value=0.047 Score=52.33 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+..|.-+.|+||+|+|||++++.++.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 55688899999999999999998763
No 457
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.66 E-value=0.073 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
No 458
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.65 E-value=0.13 Score=53.85 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccC-----CceEEEEEeccCCChHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASN-----TWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
+..|.-++++||||||||+++.+++.....+. +..+++|.+-..-+++.+.+..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~ 157 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMA 157 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHH
Confidence 33467889999999999999998875431111 1256666654444566655544
No 459
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.64 E-value=0.055 Score=53.02 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=21.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|.-+.++||+|||||++++.+...+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4557899999999999999998765
No 460
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.63 E-value=0.054 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=19.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|||+||+|+|||++...+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 567999999999999999888764
No 461
>PRK13946 shikimate kinase; Provisional
Probab=93.63 E-value=0.062 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++|+|+|.+|||||++++.+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999876
No 462
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=93.60 E-value=0.89 Score=56.16 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+-|-++|++|+|||++++.+.+.+
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 34568899999999999999998765
No 463
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.60 E-value=0.054 Score=49.63 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.++..
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 464
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.57 E-value=0.062 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=22.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|..+.++||+|||||++++.+...+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 36678999999999999999988765
No 465
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.56 E-value=0.057 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998763
No 466
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.55 E-value=0.1 Score=60.09 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=26.0
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+...+.++..+++.||||||||+++..++..+
T Consensus 165 Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~ 197 (637)
T TIGR00376 165 AVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL 197 (637)
T ss_pred HHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 345566666789999999999999888776654
No 467
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.53 E-value=0.07 Score=53.27 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=31.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq 453 (583)
+..|.-++|.|+||+|||+++.+++.......+..+.. ||..-++..+.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly--~s~E~~~~~~~ 58 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLF--FSLEMSKEQLL 58 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEE--EeCCCCHHHHH
Confidence 44567889999999999999998876542222344443 44444444433
No 468
>PF12846 AAA_10: AAA-like domain
Probab=93.51 E-value=0.076 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.|++++|++|+|||++++.++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~ 25 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL 25 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999888765
No 469
>KOG0925|consensus
Probab=93.49 E-value=0.44 Score=51.80 Aligned_cols=160 Identities=20% Similarity=0.261 Sum_probs=82.4
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCC-----------------------c-------eEEEEEeccCCChH
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNT-----------------------W-------AALTINFSAQTSSA 450 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~-----------------------~-------~~~~i~fS~~Tt~~ 450 (583)
.++.+++-++++|++|||||+-+-+..-....... + .-..|.|-..++++
T Consensus 57 ~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~ 136 (699)
T KOG0925|consen 57 KLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPN 136 (699)
T ss_pred HHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccccccccccCChh
Confidence 45667899999999999999965443221100000 0 01134444444444
Q ss_pred HHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC
Q psy17974 451 RTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA 530 (583)
Q Consensus 451 ~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~ 530 (583)
.+.+..-..+--| .-.-.|--++..|+.+||.|--.. .+....-+|++..-.+ .|+.+|.-..
T Consensus 137 T~Lky~tDgmLlr-Eams~p~l~~y~viiLDeahERtl---ATDiLmGllk~v~~~r-------------pdLk~vvmSa 199 (699)
T KOG0925|consen 137 TLLKYCTDGMLLR-EAMSDPLLGRYGVIILDEAHERTL---ATDILMGLLKEVVRNR-------------PDLKLVVMSA 199 (699)
T ss_pred HHHHHhcchHHHH-HHhhCcccccccEEEechhhhhhH---HHHHHHHHHHHHHhhC-------------CCceEEEeec
Confidence 4433321111000 000123456778999999885221 1222445666655422 1333332222
Q ss_pred CCCCCC----------CCCChhhhccceEEEeCCCCHHHHHHHHHHHhcccccCCCccc
Q psy17974 531 PPGGGR----------MPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPGKQEGTSSI 579 (583)
Q Consensus 531 p~~~gr----------~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~l~~~~~~~ 579 (583)
|-..++ -.++. ..-.-+++.+.|..+.+..+..+.++-|..+..-+|
T Consensus 200 tl~a~Kfq~yf~n~Pll~vpg--~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 200 TLDAEKFQRYFGNAPLLAVPG--THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred ccchHHHHHHhCCCCeeecCC--CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 211110 01111 112236888899999999999999998877654443
No 470
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.47 E-value=0.051 Score=53.45 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+|||++++.++.-+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999987754
No 471
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.053 Score=54.33 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.-+..|.=|-++||+||||||+.+-++.
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788899999999999999987764
No 472
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.44 E-value=0.63 Score=53.96 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=71.8
Q ss_pred hhhhHHHHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc-CCChHHHHHHHHhhhhh-----
Q psy17974 391 DTIRFGSIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA-QTSSARTQEILEGKLDK----- 462 (583)
Q Consensus 391 dt~r~~~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~-~Tt~~~lq~~ie~~l~~----- 462 (583)
..+.-..+++.+-.. .+=++++-|.|.|||+++-.+.... .++..+.=+++.. ...+..+...+-..+.+
T Consensus 20 ~~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 20 NYVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred cccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccc
Confidence 334444566666654 4678999999999999999887633 2344455455543 23343333322222211
Q ss_pred -------hcCccc-----------c--CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecC
Q psy17974 463 -------RTKTLL-----------G--APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQD 522 (583)
Q Consensus 463 -------~~~~~~-----------~--p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~ 522 (583)
..+..+ . .+-.+++++++||.|..... ...+-||-+++|. .++
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~-----~l~~~l~fLl~~~------------P~~ 160 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDP-----ALHEALRFLLKHA------------PEN 160 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcc-----cHHHHHHHHHHhC------------CCC
Confidence 011111 1 22345789999999996543 3678999999865 356
Q ss_pred eEEEEecC
Q psy17974 523 VVLCTACA 530 (583)
Q Consensus 523 i~~iaa~~ 530 (583)
+++|.++.
T Consensus 161 l~lvv~SR 168 (894)
T COG2909 161 LTLVVTSR 168 (894)
T ss_pred eEEEEEec
Confidence 67776654
No 473
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=93.43 E-value=0.13 Score=47.76 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 391 DTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 391 dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+|.+....+...+..|.-|+|.|+=|+|||++++.+++.+.
T Consensus 10 ~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 10 ATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 46777777888888999999999999999999999999884
No 474
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.41 E-value=0.058 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988764
No 475
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.41 E-value=0.12 Score=48.53 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=27.0
Q ss_pred HHHHHHHhc--CCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 397 SIMEKLLLV--NHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 397 ~ll~~~l~~--~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+++.+-.. ..++++.||+|||||.++-.++..+.
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 334444444 68999999999999999998777763
No 476
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.40 E-value=0.059 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.++++|++|+|||++++.++..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 477
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.054 Score=52.96 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..+.|+||+|+|||++++.++..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578889999999999999999888754
No 478
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.054 Score=53.91 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..+.|+||+|+|||++++.++.-+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999887755
No 479
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.38 E-value=0.16 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+++.|+||||||+++..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998765
No 480
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.38 E-value=0.061 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 481
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.37 E-value=0.05 Score=54.02 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.3
Q ss_pred CCceEEEccCCCcHHHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l 427 (583)
...+|++|+||+|||++++.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999998875
No 482
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=93.35 E-value=0.028 Score=63.21 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=31.8
Q ss_pred CccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 382 FFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 382 ~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+.++-|-|++-.....=++.-+..|..+++.||+|||||++.++++.
T Consensus 395 ~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaG 441 (604)
T COG4178 395 LENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441 (604)
T ss_pred EeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34444444443321122334467899999999999999999998864
No 483
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.35 E-value=0.11 Score=55.59 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=29.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.+..++++||+|+|||+++..++..+. ..+..+..++...+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCcc
Confidence 577889999999999999998876552 23455555655444
No 484
>PRK14526 adenylate kinase; Provisional
Probab=93.32 E-value=0.065 Score=52.93 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++|+||||||||++++.++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999888754
No 485
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.31 E-value=0.057 Score=52.90 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=24.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..+.|+||+|+|||++++.++..+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999888754
No 486
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=93.30 E-value=0.51 Score=49.13 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=64.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
+-++|.|+.|+|||++++-+ ..+-.. +. ++ + +++..+++ ++. .+.....-.||++ +++||+..-
T Consensus 77 ~~~~l~G~g~nGKStl~~~l-~~l~G~--~~---~~--~-~~~~~~~~-----~~~-~~f~~a~l~gk~l-~~~~E~~~~ 140 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLL-SNLLGD--YA---TT--A-VASLKMNE-----FQE-HRFGLARLEGKRA-VIGDEVQKG 140 (304)
T ss_pred EEEEEECCCCCcHHHHHHHH-HHHhCh--hh---cc--C-Ccchhhhh-----ccC-CCchhhhhcCCEE-EEecCCCCC
Confidence 46799999999999998744 443222 11 00 0 11111221 111 0111122345554 567997532
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCC--CeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeC
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDK--MFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~--~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
.. ...+.|+++....-..-+.+ ..+.......+|.++|..- .-..-+..+.||+.+|.++
T Consensus 141 ~~------~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P-~~~~~~~a~~RR~~vi~f~ 202 (304)
T TIGR01613 141 YR------DDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLP-RIRGFDGGIKRRLRIIPFT 202 (304)
T ss_pred cc------ccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCC-ccCCCChhheeeEEEEecc
Confidence 11 12478888886444432221 2232233567777888632 1123467889999888765
No 487
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.28 E-value=0.056 Score=60.44 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=36.1
Q ss_pred CeEEEEecCCCCC---CCCCCChhhhccceEEEeCCCCH-HHHHHHHHHHhcc
Q psy17974 522 DVVLCTACAPPGG---GRMPLTPRFVRHFGLLSLPSPTE-DTLKVIFKVRTSP 570 (583)
Q Consensus 522 ~i~~iaa~~p~~~---gr~~l~~Rllr~f~vi~i~~p~~-~sl~~I~~~~l~~ 570 (583)
|-.+||.+|.+.- -.+.=...|+.|..+|.+|+--. .+=.+||..+++.
T Consensus 296 D~vIiaHsNE~E~~~F~~nk~nEA~~DRi~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 296 DGIILAHSNESEWQTFRNNKNNEAFLDRIYIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred ceeEEecCCHHHHHHHhcCccchhhhceEEEEeCCccCChhHHHHHHHHHhcC
Confidence 5567888877641 12445689999999999999755 5556799999865
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.28 E-value=0.058 Score=51.92 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..+.|+||+|+|||++++.++.-.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578899999999999999999887654
No 489
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.27 E-value=0.11 Score=50.84 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.+-++||+|+|||++++.++..+.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 478999999999999999998763
No 490
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.27 E-value=0.11 Score=48.81 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=25.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.-+.|+|.+|+|||++++.+.+.+. ..++.+..+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~-~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLF-ARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEe
Confidence 4578999999999999999988773 334445444
No 491
>PRK08356 hypothetical protein; Provisional
Probab=93.27 E-value=0.06 Score=52.23 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.3
Q ss_pred CceEEEccCCCcHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l 427 (583)
..++|+||||||||++++.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 357899999999999999883
No 492
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.25 E-value=0.062 Score=48.73 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.8
Q ss_pred eEEEccCCCcHHHHHHHHHHh
Q psy17974 409 VMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~ 429 (583)
|.++|++|+|||++++.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999988764
No 493
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.24 E-value=0.13 Score=51.03 Aligned_cols=133 Identities=18% Similarity=0.225 Sum_probs=74.7
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhh----hhcC--------------
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD----KRTK-------------- 465 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~----~~~~-------------- 465 (583)
..|+.+++.|++|+|||+++..+++... .+ .. +.+-+.. ....+.++++.-.+ ++.-
T Consensus 13 g~Gqr~~I~g~~g~GKt~Ll~~i~~~~~-~d-~~-V~~~iGe--r~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~ 87 (215)
T PF00006_consen 13 GRGQRIGIFGGAGVGKTVLLQEIANNQD-AD-VV-VYALIGE--RGREVTEFIEELKGEGALERTVVVAATSDEPPAARY 87 (215)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHCT-TT-EE-EEEEESE--CHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHH
T ss_pred ccCCEEEEEcCcccccchhhHHHHhccc-cc-ce-eeeeccc--cchhHHHHHHHHhhcccccccccccccchhhHHHHh
Confidence 3578999999999999999999998762 22 22 3332222 33444444432211 1100
Q ss_pred ----------ccccCCCCCeEEEEecCCCC---------------CCcccCCCCChHHHHHHHHHhCCeeecCCCeeEee
Q psy17974 466 ----------TLLGAPLGKRLAVFVDDVNM---------------PKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTL 520 (583)
Q Consensus 466 ----------~~~~p~~gk~~vlfiDDln~---------------p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i 520 (583)
..| .-.|+..++++||+.. |..+.|-. .+...+..++|.-|-+.... .-
T Consensus 88 ~~~~~a~t~AEyf-rd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~-~~~~~l~~l~ERag~~~~~~----~~ 161 (215)
T PF00006_consen 88 RAPYTALTIAEYF-RDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPP-SLFSDLASLYERAGKVNSEE----GG 161 (215)
T ss_dssp HHHHHHHHHHHHH-HHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBT-THHHHHHHHHTTSEEBSTTT----TS
T ss_pred hhhccchhhhHHH-hhcCCceeehhhhhHHHHHHHHhhhcccccccccccccc-hhccchhhHHHHhhcccccc----CC
Confidence 001 1268999999999853 22222211 25677888888777661111 11
Q ss_pred cCeEEEEecCCCCCCC-CCCChhhhccc
Q psy17974 521 QDVVLCTACAPPGGGR-MPLTPRFVRHF 547 (583)
Q Consensus 521 ~~i~~iaa~~p~~~gr-~~l~~Rllr~f 547 (583)
..++.+.+.-+|++.. .+++..+..+.
T Consensus 162 GSIT~~~~v~~~~~d~~~pi~~~~~~~~ 189 (215)
T PF00006_consen 162 GSITAIPTVLVPGDDITDPIPDNTKSIL 189 (215)
T ss_dssp EEEEEEEEEEESTTBTTSHHHHHHHTTS
T ss_pred ceeeeecccccccccccchHHHHHHhhc
Confidence 2477777777776432 33333444443
No 494
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.24 E-value=0.058 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+..|.-+.|+||+|+|||++++.++.-+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 35678899999999999999999887644
No 495
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=93.22 E-value=0.065 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+.|+++|++|+|||++++.++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999988864
No 496
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.22 E-value=0.056 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.++|++|++|+|||+++++++..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~ 27 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNS 27 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999864
No 497
>KOG0479|consensus
Probab=93.21 E-value=0.65 Score=51.67 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=81.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEE------EEeccCCChHHHHHHHHhhhhhhcCccccCC-CCCeEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALT------INFSAQTSSARTQEILEGKLDKRTKTLLGAP-LGKRLAV 478 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~------i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~-~gk~~vl 478 (583)
..|+||+|.|.+.||.|++.+++.-+ . ....+ +-+.+..|.+ |++=|.+|+. |+- -..+.|+
T Consensus 334 DINiLlvGDPSvAKSQLLRyVLntAp-l--AI~TTGRGSSGVGLTAAVTtD--~eTGERRLEA------GAMVLADRGVV 402 (818)
T KOG0479|consen 334 DINILLVGDPSVAKSQLLRYVLNTAP-L--AIATTGRGSSGVGLTAAVTTD--QETGERRLEA------GAMVLADRGVV 402 (818)
T ss_pred ceeEEEecCchHHHHHHHHHHHhccc-c--cccccCCCCCCccceeEEeec--cccchhhhhc------CceEEccCceE
Confidence 46999999999999999999998542 0 00000 1111111111 1222344442 111 2346689
Q ss_pred EecCCCC-CCcccCCCCChHHHHHHHHHhCCeeecCCC-eeEeecCeEEEEecCCCCCC----C-----CCCChhhhccc
Q psy17974 479 FVDDVNM-PKLETYGAQPPIELLRQFLDFGGLYDRDKM-FWKTLQDVVLCTACAPPGGG----R-----MPLTPRFVRHF 547 (583)
Q Consensus 479 fiDDln~-p~~d~yg~q~~lElLRq~ld~~g~yd~~~~-~~~~i~~i~~iaa~~p~~~g----r-----~~l~~Rllr~f 547 (583)
.|||++- ...|. -.+-..+|.+..--.+-. .-.--.++.++||.||-.|- + ..++..|+++|
T Consensus 403 CIDEFDKMsDiDR-------vAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRF 475 (818)
T KOG0479|consen 403 CIDEFDKMSDIDR-------VAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRF 475 (818)
T ss_pred EehhcccccchhH-------HHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhh
Confidence 9999983 33332 123344554543321111 11112579999999997541 1 34788999999
Q ss_pred eEE--EeCCCCHHHHHHHHHHHhccc
Q psy17974 548 GLL--SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 548 ~vi--~i~~p~~~sl~~I~~~~l~~~ 571 (583)
-++ .++..+.+-=..|-...|+-|
T Consensus 476 DLlFv~lD~~d~~~D~~iSeHVLRmH 501 (818)
T KOG0479|consen 476 DLLFVVLDDIDADIDRMISEHVLRMH 501 (818)
T ss_pred cEEEEEeccccchHHHHHHHHHHHHh
Confidence 864 455555555555666666654
No 498
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.19 E-value=0.13 Score=54.17 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
+.-++++||+|+|||+++.+++..+. ..+..+..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEec
Confidence 45789999999999999999987663 33444544443
No 499
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.18 E-value=0.066 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.++++|++|+|||++++.++..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 500
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.18 E-value=0.067 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.7
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..+.++|++|+|||++++.++.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
Done!