Query psy17974
Match_columns 583
No_of_seqs 289 out of 2213
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:08:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 1E-118 4E-123 1121.8 41.5 566 1-573 284-1474(3245)
2 4akg_A Glutathione S-transfera 100.0 1E-107 5E-112 1020.1 43.9 564 1-573 343-1436(2695)
3 4b4t_J 26S protease regulatory 99.4 5.2E-12 1.8E-16 133.8 16.2 143 403-571 179-335 (405)
4 2r44_A Uncharacterized protein 99.4 2.3E-12 7.9E-17 133.5 12.6 156 401-570 41-200 (331)
5 4b4t_I 26S protease regulatory 99.3 1.2E-11 4E-16 131.6 14.6 144 405-571 215-369 (437)
6 4b4t_L 26S protease subunit RP 99.3 2.2E-11 7.5E-16 130.7 16.8 142 404-571 213-368 (437)
7 4b4t_M 26S protease regulatory 99.3 1.6E-11 5.4E-16 131.7 13.6 146 404-572 213-369 (434)
8 2chg_A Replication factor C sm 99.3 5.4E-11 1.8E-15 114.0 15.8 171 363-570 3-176 (226)
9 4b4t_K 26S protease regulatory 99.3 1.8E-11 6.1E-16 131.2 12.3 141 405-571 205-360 (428)
10 4b4t_H 26S protease regulatory 99.3 5.6E-11 1.9E-15 127.6 15.9 143 403-571 240-396 (467)
11 3pfi_A Holliday junction ATP-d 99.2 1.2E-10 4.1E-15 120.7 16.8 150 394-570 40-199 (338)
12 1xwi_A SKD1 protein; VPS4B, AA 99.2 1.3E-10 4.4E-15 120.4 16.6 145 406-571 45-195 (322)
13 2bjv_A PSP operon transcriptio 99.2 9E-11 3.1E-15 117.6 14.3 170 389-571 12-197 (265)
14 1jbk_A CLPB protein; beta barr 99.2 9.1E-12 3.1E-16 116.6 4.6 139 406-564 43-194 (195)
15 2qp9_X Vacuolar protein sortin 99.2 1.9E-10 6.7E-15 120.7 15.0 141 406-571 84-233 (355)
16 4akg_A Glutathione S-transfera 99.2 3E-10 1E-14 144.0 18.7 159 384-564 623-789 (2695)
17 3eie_A Vacuolar protein sortin 99.2 1.5E-10 5E-15 119.8 13.3 141 406-571 51-200 (322)
18 3cf0_A Transitional endoplasmi 99.2 1.2E-10 4.1E-15 119.4 12.0 143 404-571 47-202 (301)
19 3h4m_A Proteasome-activating n 99.2 1.9E-10 6.4E-15 116.3 13.0 146 404-571 49-204 (285)
20 1hqc_A RUVB; extended AAA-ATPa 99.2 5.2E-10 1.8E-14 114.9 16.4 140 405-570 37-183 (324)
21 3u61_B DNA polymerase accessor 99.1 2.8E-10 9.5E-15 117.3 13.8 139 398-569 37-179 (324)
22 2zan_A Vacuolar protein sortin 99.1 3.8E-10 1.3E-14 122.1 15.3 148 405-571 166-317 (444)
23 3t15_A Ribulose bisphosphate c 99.1 5.7E-11 1.9E-15 121.5 8.2 151 407-570 37-200 (293)
24 2qz4_A Paraplegin; AAA+, SPG7, 99.1 7.6E-10 2.6E-14 110.0 15.8 146 404-571 37-193 (262)
25 1ofh_A ATP-dependent HSL prote 99.1 7.4E-10 2.5E-14 112.6 15.5 150 405-566 49-213 (310)
26 4fcw_A Chaperone protein CLPB; 99.1 4.2E-10 1.4E-14 114.9 13.2 157 407-571 48-232 (311)
27 3te6_A Regulatory protein SIR3 99.1 4.8E-10 1.6E-14 115.7 13.6 162 394-572 31-215 (318)
28 1qvr_A CLPB protein; coiled co 99.1 4.6E-11 1.6E-15 139.4 5.9 146 406-571 191-348 (854)
29 2p65_A Hypothetical protein PF 99.1 4.3E-11 1.5E-15 111.9 4.1 131 406-556 43-187 (187)
30 3pvs_A Replication-associated 99.1 7.5E-10 2.6E-14 119.8 13.6 140 398-571 40-181 (447)
31 1sxj_A Activator 1 95 kDa subu 99.1 1.3E-09 4.5E-14 120.0 15.7 140 406-569 77-223 (516)
32 3m6a_A ATP-dependent protease 99.1 2E-10 6.9E-15 127.3 8.7 153 406-568 108-266 (543)
33 3bos_A Putative DNA replicatio 99.0 7.7E-10 2.6E-14 107.8 11.6 142 399-570 43-189 (242)
34 1r6b_X CLPA protein; AAA+, N-t 99.0 1.2E-09 4E-14 125.9 14.9 152 408-570 490-668 (758)
35 3pxg_A Negative regulator of g 99.0 6.2E-11 2.1E-15 129.1 3.6 135 405-572 200-342 (468)
36 3vfd_A Spastin; ATPase, microt 99.0 5.4E-10 1.9E-14 118.6 10.6 143 405-571 147-298 (389)
37 1ojl_A Transcriptional regulat 99.0 1.5E-09 5.2E-14 111.5 13.1 166 391-571 10-193 (304)
38 1sxj_D Activator 1 41 kDa subu 99.0 2.1E-09 7.2E-14 111.5 14.3 149 399-569 49-206 (353)
39 3cf2_A TER ATPase, transitiona 99.0 1.2E-09 4.1E-14 125.2 13.4 143 406-571 238-388 (806)
40 1l8q_A Chromosomal replication 99.0 7.3E-10 2.5E-14 114.4 10.5 141 407-570 38-181 (324)
41 3d8b_A Fidgetin-like protein 1 99.0 1.6E-09 5.6E-14 113.7 13.2 143 405-571 116-267 (357)
42 1lv7_A FTSH; alpha/beta domain 99.0 4.1E-09 1.4E-13 105.0 15.4 138 406-570 45-197 (257)
43 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 7.7E-10 2.6E-14 121.1 10.4 155 399-567 34-195 (500)
44 3b9p_A CG5977-PA, isoform A; A 99.0 9E-09 3.1E-13 104.5 17.5 141 405-571 53-205 (297)
45 2chq_A Replication factor C sm 99.0 4.9E-10 1.7E-14 114.4 8.0 169 363-569 3-175 (319)
46 3syl_A Protein CBBX; photosynt 99.0 4.5E-10 1.5E-14 114.7 7.6 144 406-571 67-220 (309)
47 3f9v_A Minichromosome maintena 99.0 9.1E-11 3.1E-15 131.4 2.5 148 408-572 329-494 (595)
48 3cf2_A TER ATPase, transitiona 99.0 1.8E-10 6E-15 132.1 4.6 143 404-571 509-664 (806)
49 1njg_A DNA polymerase III subu 99.0 6.6E-09 2.2E-13 100.4 14.8 143 399-570 35-200 (250)
50 2ce7_A Cell division protein F 99.0 5.5E-09 1.9E-13 113.6 15.4 142 406-570 49-201 (476)
51 3uk6_A RUVB-like 2; hexameric 99.0 4.4E-09 1.5E-13 110.0 14.2 83 475-570 190-274 (368)
52 3pxi_A Negative regulator of g 98.9 1E-09 3.6E-14 126.3 9.4 146 408-571 523-678 (758)
53 1iqp_A RFCS; clamp loader, ext 98.9 3.5E-09 1.2E-13 108.4 12.3 143 399-569 37-183 (327)
54 3hu3_A Transitional endoplasmi 98.9 2.7E-09 9.2E-14 116.6 12.1 144 403-571 235-388 (489)
55 1g8p_A Magnesium-chelatase 38 98.9 5.1E-09 1.7E-13 108.5 13.7 84 475-567 145-231 (350)
56 2qby_B CDC6 homolog 3, cell di 98.9 2.9E-09 1E-13 111.7 11.8 161 393-572 30-214 (384)
57 1r6b_X CLPA protein; AAA+, N-t 98.9 2.8E-10 9.7E-15 131.0 2.0 146 405-571 206-365 (758)
58 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-08 4.5E-13 103.9 14.3 145 399-569 33-180 (323)
59 2v1u_A Cell division control p 98.9 7.1E-09 2.4E-13 108.4 12.4 154 405-570 43-216 (387)
60 3pxi_A Negative regulator of g 98.9 8.5E-10 2.9E-14 127.1 5.7 136 405-573 200-343 (758)
61 2r62_A Cell division protease 98.9 5.9E-10 2E-14 111.6 2.7 142 406-571 44-199 (268)
62 3hws_A ATP-dependent CLP prote 98.9 4.4E-09 1.5E-13 110.4 9.4 154 405-566 50-267 (363)
63 3vkg_A Dynein heavy chain, cyt 98.8 3.5E-08 1.2E-12 126.1 17.7 159 384-564 582-749 (3245)
64 1fnn_A CDC6P, cell division co 98.8 3.4E-08 1.2E-12 103.5 14.7 164 393-571 27-209 (389)
65 1in4_A RUVB, holliday junction 98.8 7.4E-08 2.5E-12 100.0 15.7 136 407-569 52-194 (334)
66 2x8a_A Nuclear valosin-contain 98.8 5.5E-08 1.9E-12 98.3 14.0 140 405-570 43-193 (274)
67 2z4s_A Chromosomal replication 98.8 7.7E-09 2.6E-13 111.7 8.1 143 406-570 130-278 (440)
68 2dhr_A FTSH; AAA+ protein, hex 98.8 6.3E-08 2.1E-12 105.9 15.0 143 406-570 64-216 (499)
69 1um8_A ATP-dependent CLP prote 98.8 2.2E-08 7.5E-13 105.5 10.9 155 405-566 71-284 (376)
70 3n70_A Transport activator; si 98.8 6.9E-09 2.4E-13 94.5 6.0 129 392-554 10-143 (145)
71 1d2n_A N-ethylmaleimide-sensit 98.8 2.5E-08 8.6E-13 100.1 10.5 140 406-566 64-210 (272)
72 3co5_A Putative two-component 98.7 3.6E-09 1.2E-13 96.2 3.8 125 392-553 13-138 (143)
73 1sxj_C Activator 1 40 kDa subu 98.7 8.9E-08 3E-12 99.4 14.8 145 398-569 36-183 (340)
74 1jr3_A DNA polymerase III subu 98.7 1.2E-07 4.1E-12 98.9 14.7 134 408-570 40-193 (373)
75 1ixz_A ATP-dependent metallopr 98.7 3.7E-08 1.3E-12 97.8 8.1 142 406-570 49-201 (254)
76 1iy2_A ATP-dependent metallopr 98.6 6E-08 2E-12 97.8 9.6 142 406-570 73-225 (278)
77 2qby_A CDC6 homolog 1, cell di 98.6 1.4E-07 4.8E-12 98.3 12.7 153 406-572 45-214 (386)
78 1a5t_A Delta prime, HOLB; zinc 98.6 3.6E-07 1.2E-11 94.8 15.5 140 400-568 15-180 (334)
79 1ypw_A Transitional endoplasmi 98.6 1.2E-07 4.1E-12 109.7 12.7 143 404-571 236-388 (806)
80 1qvr_A CLPB protein; coiled co 98.6 8.7E-08 3E-12 111.7 10.7 156 407-570 589-772 (854)
81 1sxj_E Activator 1 40 kDa subu 98.6 4.2E-07 1.4E-11 94.3 14.3 140 408-569 38-207 (354)
82 1ypw_A Transitional endoplasmi 98.5 1.1E-08 3.8E-13 118.3 -0.1 140 404-570 509-663 (806)
83 2gno_A DNA polymerase III, gam 98.5 1E-06 3.5E-11 90.4 13.0 139 399-568 9-152 (305)
84 3ec2_A DNA replication protein 98.4 3E-07 1E-11 86.3 6.5 57 386-442 12-74 (180)
85 3k1j_A LON protease, ATP-depen 98.3 4.3E-06 1.5E-10 93.7 13.0 34 397-430 51-84 (604)
86 2qgz_A Helicase loader, putati 98.3 2.1E-06 7.4E-11 88.1 9.8 47 398-444 139-190 (308)
87 1w5s_A Origin recognition comp 98.3 5E-06 1.7E-10 87.6 12.7 171 393-571 32-231 (412)
88 1ny5_A Transcriptional regulat 98.2 8.9E-06 3E-10 86.1 14.2 165 392-571 146-328 (387)
89 3f8t_A Predicted ATPase involv 98.2 9.7E-07 3.3E-11 94.8 6.3 141 397-559 223-385 (506)
90 2w58_A DNAI, primosome compone 98.2 1.8E-06 6.1E-11 82.3 7.4 46 398-444 40-91 (202)
91 2c9o_A RUVB-like 1; hexameric 98.2 1.7E-05 6E-10 85.6 15.9 75 476-569 297-380 (456)
92 3dzd_A Transcriptional regulat 98.2 1.7E-05 5.9E-10 83.4 14.2 168 390-571 136-319 (368)
93 2kjq_A DNAA-related protein; s 98.0 8.9E-06 3E-10 74.3 6.9 40 405-445 35-74 (149)
94 1g41_A Heat shock protein HSLU 98.0 4E-05 1.4E-09 82.3 12.4 84 475-565 251-346 (444)
95 1u0j_A DNA replication protein 97.9 0.00011 3.7E-09 73.6 14.0 142 393-565 87-248 (267)
96 1tue_A Replication protein E1; 97.9 2.2E-05 7.7E-10 75.4 7.4 130 397-555 46-179 (212)
97 2fna_A Conserved hypothetical 97.8 0.00018 6.2E-09 73.6 14.4 147 403-569 28-223 (357)
98 2qen_A Walker-type ATPase; unk 97.7 0.00035 1.2E-08 71.4 14.6 152 399-569 24-217 (350)
99 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.0002 6.8E-09 73.5 7.3 102 405-533 122-237 (331)
100 3upu_A ATP-dependent DNA helic 96.9 0.002 6.8E-08 69.4 8.6 26 406-431 45-70 (459)
101 2orw_A Thymidine kinase; TMTK, 96.9 0.0011 3.8E-08 62.5 5.7 94 406-506 3-102 (184)
102 2r2a_A Uncharacterized protein 96.7 0.004 1.4E-07 59.5 8.3 22 408-429 7-28 (199)
103 2b8t_A Thymidine kinase; deoxy 96.5 0.0059 2E-07 59.4 8.1 94 404-507 10-116 (223)
104 1jr3_D DNA polymerase III, del 96.4 0.013 4.3E-07 60.3 10.9 136 406-569 18-156 (343)
105 3cmu_A Protein RECA, recombina 96.4 0.0085 2.9E-07 74.6 10.8 49 399-448 1415-1468(2050)
106 1ex7_A Guanylate kinase; subst 96.4 0.0016 5.5E-08 61.6 3.3 25 406-430 1-25 (186)
107 3vaa_A Shikimate kinase, SK; s 96.1 0.0029 9.8E-08 59.9 3.6 28 403-430 22-49 (199)
108 1qhx_A CPT, protein (chloramph 96.0 0.0037 1.3E-07 57.5 3.5 25 406-430 3-27 (178)
109 2qor_A Guanylate kinase; phosp 95.9 0.0039 1.3E-07 59.2 3.3 29 402-430 8-36 (204)
110 3trf_A Shikimate kinase, SK; a 95.8 0.0046 1.6E-07 57.3 3.5 25 406-430 5-29 (185)
111 1kgd_A CASK, peripheral plasma 95.8 0.0045 1.5E-07 57.6 3.4 26 405-430 4-29 (180)
112 1lvg_A Guanylate kinase, GMP k 95.8 0.0047 1.6E-07 58.6 3.5 27 404-430 2-28 (198)
113 2r8r_A Sensor protein; KDPD, P 95.8 0.043 1.5E-06 53.4 10.1 137 407-562 7-171 (228)
114 1kag_A SKI, shikimate kinase I 95.7 0.0062 2.1E-07 55.7 3.8 25 406-430 4-28 (173)
115 2oap_1 GSPE-2, type II secreti 95.7 0.01 3.6E-07 64.8 5.9 35 397-431 251-285 (511)
116 1zp6_A Hypothetical protein AT 95.6 0.0038 1.3E-07 58.2 2.0 27 403-429 6-32 (191)
117 2c95_A Adenylate kinase 1; tra 95.6 0.0082 2.8E-07 55.9 4.3 29 402-430 5-33 (196)
118 3kb2_A SPBC2 prophage-derived 95.6 0.0062 2.1E-07 55.4 3.3 23 408-430 3-25 (173)
119 3iij_A Coilin-interacting nucl 95.6 0.0077 2.6E-07 55.7 3.8 26 405-430 10-35 (180)
120 1nks_A Adenylate kinase; therm 95.5 0.0098 3.4E-07 55.0 4.6 33 408-441 3-35 (194)
121 3lw7_A Adenylate kinase relate 95.5 0.0092 3.2E-07 54.0 4.3 22 408-430 3-24 (179)
122 3e1s_A Exodeoxyribonuclease V, 95.5 0.01 3.6E-07 65.7 5.5 36 405-441 203-238 (574)
123 1kht_A Adenylate kinase; phosp 95.5 0.0074 2.5E-07 55.9 3.5 25 406-430 3-27 (192)
124 1ly1_A Polynucleotide kinase; 95.5 0.0072 2.4E-07 55.4 3.2 21 408-428 4-24 (181)
125 2iut_A DNA translocase FTSK; n 95.4 0.11 3.6E-06 57.3 12.9 77 475-566 344-421 (574)
126 2gza_A Type IV secretion syste 95.4 0.016 5.6E-07 60.3 6.0 34 397-430 166-199 (361)
127 3tau_A Guanylate kinase, GMP k 95.4 0.0073 2.5E-07 57.6 2.9 27 404-430 6-32 (208)
128 1z6g_A Guanylate kinase; struc 95.3 0.0094 3.2E-07 57.4 3.7 31 400-430 17-47 (218)
129 2j41_A Guanylate kinase; GMP, 95.3 0.0086 2.9E-07 56.3 3.4 27 404-430 4-30 (207)
130 1via_A Shikimate kinase; struc 95.3 0.0095 3.2E-07 54.8 3.6 24 407-430 5-28 (175)
131 3ney_A 55 kDa erythrocyte memb 95.3 0.0092 3.1E-07 56.9 3.5 26 405-430 18-43 (197)
132 2rhm_A Putative kinase; P-loop 95.3 0.0069 2.4E-07 56.3 2.5 25 406-430 5-29 (193)
133 2cvh_A DNA repair and recombin 95.2 0.02 6.7E-07 54.3 5.6 48 404-455 18-65 (220)
134 3uie_A Adenylyl-sulfate kinase 95.2 0.01 3.5E-07 56.0 3.5 32 400-431 19-50 (200)
135 3a00_A Guanylate kinase, GMP k 95.2 0.011 3.7E-07 55.2 3.6 25 406-430 1-25 (186)
136 4eun_A Thermoresistant glucoki 95.2 0.011 3.8E-07 55.8 3.6 26 405-430 28-53 (200)
137 3cm0_A Adenylate kinase; ATP-b 95.1 0.0083 2.8E-07 55.5 2.6 26 405-430 3-28 (186)
138 3tr0_A Guanylate kinase, GMP k 95.1 0.011 3.7E-07 55.6 3.4 27 404-430 5-31 (205)
139 1y63_A LMAJ004144AAA protein; 95.1 0.012 4E-07 54.9 3.5 25 405-429 9-33 (184)
140 1n0w_A DNA repair protein RAD5 95.1 0.031 1.1E-06 53.8 6.6 27 403-429 21-47 (243)
141 1knq_A Gluconate kinase; ALFA/ 95.1 0.011 3.7E-07 54.3 3.0 25 406-430 8-32 (175)
142 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.016 5.4E-07 59.7 4.5 35 396-430 161-195 (330)
143 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4.1E-07 55.4 3.3 24 407-430 19-42 (202)
144 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.4E-07 53.4 3.4 24 407-430 8-31 (168)
145 1aky_A Adenylate kinase; ATP:A 95.0 0.014 4.7E-07 55.9 3.6 26 405-430 3-28 (220)
146 1ye8_A Protein THEP1, hypothet 95.0 0.013 4.5E-07 54.7 3.4 23 408-430 2-24 (178)
147 1gvn_B Zeta; postsegregational 94.9 0.01 3.4E-07 59.9 2.7 24 407-430 34-57 (287)
148 2iyv_A Shikimate kinase, SK; t 94.9 0.016 5.3E-07 53.7 3.8 24 407-430 3-26 (184)
149 2bwj_A Adenylate kinase 5; pho 94.9 0.014 4.7E-07 54.5 3.4 26 405-430 11-36 (199)
150 2ze6_A Isopentenyl transferase 94.9 0.013 4.6E-07 57.7 3.3 23 408-430 3-25 (253)
151 2bbw_A Adenylate kinase 4, AK4 94.9 0.015 5.1E-07 56.8 3.6 27 404-430 25-51 (246)
152 1zak_A Adenylate kinase; ATP:A 94.8 0.015 5.2E-07 55.7 3.6 26 405-430 4-29 (222)
153 1s96_A Guanylate kinase, GMP k 94.8 0.015 5.2E-07 56.2 3.5 30 401-430 11-40 (219)
154 3jvv_A Twitching mobility prot 94.8 0.021 7.2E-07 59.5 4.7 30 401-430 118-147 (356)
155 1znw_A Guanylate kinase, GMP k 94.8 0.016 5.4E-07 55.1 3.5 29 402-430 16-44 (207)
156 2yvu_A Probable adenylyl-sulfa 94.8 0.019 6.5E-07 53.3 4.0 26 405-430 12-37 (186)
157 2plr_A DTMP kinase, probable t 94.8 0.014 4.7E-07 55.0 3.0 26 406-431 4-29 (213)
158 2a5y_B CED-4; apoptosis; HET: 94.8 0.078 2.7E-06 58.2 9.5 128 407-567 153-305 (549)
159 1tev_A UMP-CMP kinase; ploop, 94.7 0.016 5.4E-07 53.7 3.3 25 406-430 3-27 (196)
160 2cdn_A Adenylate kinase; phosp 94.7 0.017 5.8E-07 54.4 3.5 24 407-430 21-44 (201)
161 1e6c_A Shikimate kinase; phosp 94.7 0.018 6.2E-07 52.4 3.6 24 407-430 3-26 (173)
162 3fb4_A Adenylate kinase; psych 94.7 0.016 5.5E-07 55.1 3.3 23 408-430 2-24 (216)
163 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.5E-07 55.1 3.3 23 408-430 2-24 (216)
164 1zd8_A GTP:AMP phosphotransfer 94.7 0.017 5.7E-07 55.6 3.4 26 405-430 6-31 (227)
165 1xx6_A Thymidine kinase; NESG, 94.7 0.021 7.2E-07 54.1 4.0 92 406-506 8-107 (191)
166 2bdt_A BH3686; alpha-beta prot 94.7 0.013 4.3E-07 54.6 2.4 24 407-430 3-26 (189)
167 3sr0_A Adenylate kinase; phosp 94.6 0.025 8.5E-07 54.2 4.4 23 408-430 2-24 (206)
168 4b3f_X DNA-binding protein smu 94.6 0.034 1.2E-06 62.4 6.2 32 399-430 198-229 (646)
169 2eyu_A Twitching motility prot 94.6 0.015 5E-07 57.9 2.8 28 403-430 22-49 (261)
170 4gp7_A Metallophosphoesterase; 94.6 0.01 3.6E-07 54.7 1.6 23 405-427 8-30 (171)
171 2v54_A DTMP kinase, thymidylat 94.6 0.019 6.4E-07 53.8 3.4 26 405-430 3-28 (204)
172 4a74_A DNA repair and recombin 94.6 0.037 1.3E-06 52.7 5.5 28 403-430 22-49 (231)
173 2wwf_A Thymidilate kinase, put 94.5 0.019 6.6E-07 54.2 3.4 26 405-430 9-34 (212)
174 2ehv_A Hypothetical protein PH 94.5 0.015 5.1E-07 56.2 2.7 25 403-427 27-51 (251)
175 2fz4_A DNA repair protein RAD2 94.5 0.054 1.8E-06 52.7 6.7 31 399-430 102-132 (237)
176 3tlx_A Adenylate kinase 2; str 94.5 0.034 1.2E-06 54.3 5.3 25 406-430 29-53 (243)
177 1nn5_A Similar to deoxythymidy 94.5 0.02 6.7E-07 54.1 3.4 27 404-430 7-33 (215)
178 1cke_A CK, MSSA, protein (cyti 94.5 0.02 6.8E-07 54.7 3.4 25 406-430 5-29 (227)
179 2jaq_A Deoxyguanosine kinase; 94.5 0.02 6.9E-07 53.5 3.3 23 408-430 2-24 (205)
180 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.02 6.7E-07 54.5 3.3 28 403-430 20-47 (235)
181 1qf9_A UMP/CMP kinase, protein 94.4 0.02 6.9E-07 52.9 3.2 24 407-430 7-30 (194)
182 2vli_A Antibiotic resistance p 94.4 0.016 5.4E-07 53.4 2.5 25 406-430 5-29 (183)
183 2z0h_A DTMP kinase, thymidylat 94.4 0.041 1.4E-06 51.1 5.4 34 409-443 3-36 (197)
184 3cmw_A Protein RECA, recombina 94.4 0.048 1.6E-06 67.2 7.2 40 405-445 1081-1120(1706)
185 3be4_A Adenylate kinase; malar 94.4 0.024 8.1E-07 54.3 3.6 25 406-430 5-29 (217)
186 2pez_A Bifunctional 3'-phospho 94.4 0.029 9.8E-07 51.7 4.1 26 405-430 4-29 (179)
187 2z43_A DNA repair and recombin 94.3 0.054 1.8E-06 55.3 6.5 54 403-456 104-162 (324)
188 3umf_A Adenylate kinase; rossm 94.3 0.028 9.6E-07 54.3 4.1 25 406-430 29-53 (217)
189 1np6_A Molybdopterin-guanine d 94.3 0.037 1.3E-06 51.5 4.7 38 407-445 7-44 (174)
190 2j9r_A Thymidine kinase; TK1, 94.2 0.058 2E-06 51.9 6.0 93 406-507 28-128 (214)
191 1ukz_A Uridylate kinase; trans 94.2 0.024 8.3E-07 53.2 3.3 24 407-430 16-39 (203)
192 2dr3_A UPF0273 protein PH0284; 94.2 0.028 9.5E-07 54.2 3.8 49 403-454 20-68 (247)
193 1ak2_A Adenylate kinase isoenz 94.2 0.025 8.6E-07 54.7 3.5 26 405-430 15-40 (233)
194 2p5t_B PEZT; postsegregational 94.2 0.015 5.3E-07 57.1 1.9 24 407-430 33-56 (253)
195 2pt5_A Shikimate kinase, SK; a 94.1 0.027 9.1E-07 51.1 3.3 23 408-430 2-24 (168)
196 1xjc_A MOBB protein homolog; s 94.1 0.04 1.4E-06 51.1 4.4 37 408-445 6-42 (169)
197 1e4v_A Adenylate kinase; trans 94.1 0.025 8.6E-07 53.8 3.1 23 408-430 2-24 (214)
198 3nwj_A ATSK2; P loop, shikimat 94.1 0.029 9.9E-07 55.4 3.6 25 406-430 48-72 (250)
199 1sky_E F1-ATPase, F1-ATP synth 94.1 0.034 1.2E-06 59.8 4.4 37 393-430 139-175 (473)
200 2pbr_A DTMP kinase, thymidylat 94.0 0.028 9.6E-07 52.0 3.3 33 408-441 2-34 (195)
201 2ewv_A Twitching motility prot 94.0 0.023 7.8E-07 59.5 2.9 28 403-430 133-160 (372)
202 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.025 8.6E-07 55.9 3.1 25 406-430 4-28 (260)
203 1vt4_I APAF-1 related killer D 94.0 0.15 5E-06 60.1 9.6 51 406-456 150-202 (1221)
204 1htw_A HI0065; nucleotide-bind 93.9 0.024 8.2E-07 51.9 2.6 28 403-430 30-57 (158)
205 3ice_A Transcription terminati 93.9 0.047 1.6E-06 57.3 5.0 33 398-430 164-198 (422)
206 1p9r_A General secretion pathw 93.9 0.05 1.7E-06 57.8 5.3 28 404-431 165-192 (418)
207 3c8u_A Fructokinase; YP_612366 93.9 0.024 8.2E-07 53.8 2.6 26 405-430 21-46 (208)
208 1gtv_A TMK, thymidylate kinase 93.9 0.021 7.2E-07 54.0 2.2 23 408-430 2-24 (214)
209 2zts_A Putative uncharacterize 93.9 0.049 1.7E-06 52.4 4.9 50 405-456 29-78 (251)
210 2xb4_A Adenylate kinase; ATP-b 93.8 0.031 1.1E-06 53.7 3.3 23 408-430 2-24 (223)
211 1z6t_A APAF-1, apoptotic prote 93.8 0.082 2.8E-06 58.2 7.1 24 406-429 147-170 (591)
212 1m7g_A Adenylylsulfate kinase; 93.8 0.031 1E-06 53.2 3.2 28 403-430 22-49 (211)
213 1cr0_A DNA primase/helicase; R 93.8 0.04 1.4E-06 55.3 4.1 29 402-430 31-59 (296)
214 2v9p_A Replication protein E1; 93.8 0.031 1E-06 56.9 3.2 32 399-430 119-150 (305)
215 3lnc_A Guanylate kinase, GMP k 93.7 0.018 6.3E-07 55.5 1.5 28 403-430 24-52 (231)
216 4e22_A Cytidylate kinase; P-lo 93.7 0.028 9.7E-07 55.3 2.8 29 402-430 23-51 (252)
217 2i3b_A HCR-ntpase, human cance 93.7 0.041 1.4E-06 51.9 3.7 25 406-430 1-25 (189)
218 1xp8_A RECA protein, recombina 93.7 0.14 4.9E-06 53.3 8.3 39 405-444 73-111 (366)
219 2qmh_A HPR kinase/phosphorylas 93.6 0.027 9.4E-07 53.7 2.3 26 405-430 33-58 (205)
220 3crm_A TRNA delta(2)-isopenten 93.5 0.053 1.8E-06 55.6 4.6 24 407-430 6-29 (323)
221 3b85_A Phosphate starvation-in 93.5 0.048 1.7E-06 52.2 4.0 32 397-429 14-45 (208)
222 1z2a_A RAS-related protein RAB 93.5 0.039 1.3E-06 49.3 3.1 23 407-429 6-28 (168)
223 2dyk_A GTP-binding protein; GT 93.4 0.04 1.4E-06 48.9 3.1 22 408-429 3-24 (161)
224 1ek0_A Protein (GTP-binding pr 93.4 0.04 1.4E-06 49.2 3.0 23 407-429 4-26 (170)
225 1kao_A RAP2A; GTP-binding prot 93.4 0.042 1.4E-06 48.8 3.1 23 407-429 4-26 (167)
226 2if2_A Dephospho-COA kinase; a 93.3 0.041 1.4E-06 51.7 3.2 22 408-430 3-24 (204)
227 2qt1_A Nicotinamide riboside k 93.3 0.03 1E-06 52.9 2.1 25 406-430 21-45 (207)
228 3asz_A Uridine kinase; cytidin 93.3 0.038 1.3E-06 52.2 2.9 26 405-430 5-30 (211)
229 2ga8_A Hypothetical 39.9 kDa p 93.3 0.061 2.1E-06 55.8 4.6 32 399-430 15-48 (359)
230 1svm_A Large T antigen; AAA+ f 93.3 0.038 1.3E-06 58.0 3.1 28 403-430 166-193 (377)
231 3tif_A Uncharacterized ABC tra 93.3 0.031 1.1E-06 54.5 2.2 28 403-430 28-55 (235)
232 2ce2_X GTPase HRAS; signaling 93.2 0.043 1.5E-06 48.6 3.0 22 408-429 5-26 (166)
233 3a8t_A Adenylate isopentenyltr 93.2 0.035 1.2E-06 57.3 2.6 24 407-430 41-64 (339)
234 1z0j_A RAB-22, RAS-related pro 93.2 0.044 1.5E-06 49.0 3.0 23 407-429 7-29 (170)
235 1u8z_A RAS-related protein RAL 93.2 0.045 1.5E-06 48.6 3.0 23 407-429 5-27 (168)
236 2cbz_A Multidrug resistance-as 93.2 0.033 1.1E-06 54.5 2.2 28 403-430 28-55 (237)
237 1wms_A RAB-9, RAB9, RAS-relate 93.1 0.045 1.5E-06 49.5 3.0 23 407-429 8-30 (177)
238 1v5w_A DMC1, meiotic recombina 93.1 0.12 3.9E-06 53.4 6.4 51 405-455 121-176 (343)
239 1g16_A RAS-related protein SEC 93.1 0.047 1.6E-06 48.8 3.0 23 407-429 4-26 (170)
240 1rz3_A Hypothetical protein rb 93.1 0.1 3.5E-06 49.2 5.5 35 396-430 8-46 (201)
241 4eaq_A DTMP kinase, thymidylat 93.1 0.081 2.8E-06 51.3 4.8 35 405-441 25-59 (229)
242 3sop_A Neuronal-specific septi 93.0 0.044 1.5E-06 54.7 3.0 23 408-430 4-26 (270)
243 1jjv_A Dephospho-COA kinase; P 93.0 0.045 1.5E-06 51.6 2.9 21 408-428 4-24 (206)
244 2pcj_A ABC transporter, lipopr 93.0 0.034 1.2E-06 53.8 2.1 28 403-430 27-54 (224)
245 2erx_A GTP-binding protein DI- 93.0 0.037 1.3E-06 49.5 2.1 23 407-429 4-26 (172)
246 1ky3_A GTP-binding protein YPT 93.0 0.051 1.7E-06 49.2 3.1 23 407-429 9-31 (182)
247 3llm_A ATP-dependent RNA helic 93.0 0.071 2.4E-06 51.5 4.3 26 402-427 72-97 (235)
248 2f9l_A RAB11B, member RAS onco 93.0 0.052 1.8E-06 50.7 3.2 23 407-429 6-28 (199)
249 1oix_A RAS-related protein RAB 93.0 0.051 1.7E-06 50.6 3.1 24 407-430 30-53 (191)
250 1z08_A RAS-related protein RAB 92.9 0.052 1.8E-06 48.6 3.1 23 407-429 7-29 (170)
251 1c1y_A RAS-related protein RAP 92.9 0.053 1.8E-06 48.3 3.1 23 407-429 4-26 (167)
252 1sgw_A Putative ABC transporte 92.9 0.04 1.4E-06 53.1 2.4 28 403-430 32-59 (214)
253 3r20_A Cytidylate kinase; stru 92.9 0.058 2E-06 52.7 3.5 26 405-430 8-33 (233)
254 1ltq_A Polynucleotide kinase; 92.8 0.052 1.8E-06 54.3 3.2 22 408-429 4-25 (301)
255 1nrj_B SR-beta, signal recogni 92.8 0.058 2E-06 50.9 3.4 25 406-430 12-36 (218)
256 1uf9_A TT1252 protein; P-loop, 92.8 0.048 1.7E-06 50.9 2.7 24 406-429 8-31 (203)
257 2nzj_A GTP-binding protein REM 92.8 0.055 1.9E-06 48.7 3.1 23 407-429 5-27 (175)
258 3tqf_A HPR(Ser) kinase; transf 92.8 0.051 1.8E-06 50.6 2.8 25 405-429 15-39 (181)
259 1r8s_A ADP-ribosylation factor 92.8 0.059 2E-06 48.0 3.2 22 408-429 2-23 (164)
260 2px0_A Flagellar biosynthesis 92.8 0.12 4E-06 52.3 5.7 41 405-445 104-144 (296)
261 2ged_A SR-beta, signal recogni 92.8 0.064 2.2E-06 49.4 3.5 24 406-429 48-71 (193)
262 1r2q_A RAS-related protein RAB 92.7 0.059 2E-06 48.1 3.1 23 407-429 7-29 (170)
263 1ko7_A HPR kinase/phosphatase; 92.7 0.096 3.3E-06 53.4 5.0 40 390-429 112-167 (314)
264 2lkc_A Translation initiation 92.7 0.057 1.9E-06 48.8 3.0 25 405-429 7-31 (178)
265 2wji_A Ferrous iron transport 92.7 0.058 2E-06 48.7 3.1 23 407-429 4-26 (165)
266 2pze_A Cystic fibrosis transme 92.7 0.041 1.4E-06 53.4 2.2 28 403-430 31-58 (229)
267 1nlf_A Regulatory protein REPA 92.7 0.046 1.6E-06 54.4 2.5 28 403-430 27-54 (279)
268 3bh0_A DNAB-like replicative h 92.6 0.14 4.9E-06 52.0 6.2 50 403-455 65-114 (315)
269 3bc1_A RAS-related protein RAB 92.6 0.061 2.1E-06 49.2 3.1 23 407-429 12-34 (195)
270 2ghi_A Transport protein; mult 92.6 0.044 1.5E-06 54.4 2.2 28 403-430 43-70 (260)
271 3hr8_A Protein RECA; alpha and 92.6 0.096 3.3E-06 54.4 4.9 44 399-443 49-97 (356)
272 3exa_A TRNA delta(2)-isopenten 92.6 0.055 1.9E-06 55.2 3.0 24 407-430 4-27 (322)
273 2ff7_A Alpha-hemolysin translo 92.6 0.044 1.5E-06 53.9 2.2 28 403-430 32-59 (247)
274 2zej_A Dardarin, leucine-rich 92.6 0.052 1.8E-06 50.0 2.6 22 407-428 3-24 (184)
275 2zr9_A Protein RECA, recombina 92.6 0.14 4.9E-06 52.9 6.2 39 405-444 60-98 (349)
276 2bme_A RAB4A, RAS-related prot 92.6 0.071 2.4E-06 48.6 3.5 23 407-429 11-33 (186)
277 2d2e_A SUFC protein; ABC-ATPas 92.6 0.052 1.8E-06 53.4 2.7 27 403-429 26-52 (250)
278 2fn4_A P23, RAS-related protei 92.5 0.061 2.1E-06 48.6 3.0 23 407-429 10-32 (181)
279 1g6h_A High-affinity branched- 92.5 0.044 1.5E-06 54.2 2.2 28 403-430 30-57 (257)
280 2y8e_A RAB-protein 6, GH09086P 92.5 0.062 2.1E-06 48.4 3.0 23 407-429 15-37 (179)
281 2hxs_A RAB-26, RAS-related pro 92.5 0.064 2.2E-06 48.5 3.1 23 407-429 7-29 (178)
282 2zu0_C Probable ATP-dependent 92.5 0.053 1.8E-06 53.9 2.7 27 403-429 43-69 (267)
283 3q85_A GTP-binding protein REM 92.5 0.066 2.2E-06 47.9 3.1 21 408-428 4-24 (169)
284 3foz_A TRNA delta(2)-isopenten 92.5 0.065 2.2E-06 54.6 3.3 23 408-430 12-34 (316)
285 2gj8_A MNME, tRNA modification 92.5 0.056 1.9E-06 49.3 2.6 25 405-429 3-27 (172)
286 1b0u_A Histidine permease; ABC 92.4 0.047 1.6E-06 54.2 2.2 28 403-430 29-56 (262)
287 4edh_A DTMP kinase, thymidylat 92.4 0.1 3.6E-06 50.0 4.6 39 405-444 5-43 (213)
288 2hf9_A Probable hydrogenase ni 92.4 0.11 3.9E-06 49.2 4.9 24 407-430 39-62 (226)
289 1z0f_A RAB14, member RAS oncog 92.4 0.067 2.3E-06 48.2 3.1 23 407-429 16-38 (179)
290 1upt_A ARL1, ADP-ribosylation 92.4 0.067 2.3E-06 47.9 3.1 24 406-429 7-30 (171)
291 1svi_A GTP-binding protein YSX 92.4 0.064 2.2E-06 49.4 3.0 24 406-429 23-46 (195)
292 2atv_A RERG, RAS-like estrogen 92.4 0.064 2.2E-06 49.8 3.0 25 405-429 27-51 (196)
293 3pqc_A Probable GTP-binding pr 92.4 0.064 2.2E-06 49.2 2.9 23 407-429 24-46 (195)
294 1mv5_A LMRA, multidrug resista 92.4 0.042 1.4E-06 53.9 1.7 27 403-429 25-51 (243)
295 1ji0_A ABC transporter; ATP bi 92.3 0.049 1.7E-06 53.3 2.2 28 403-430 29-56 (240)
296 3q72_A GTP-binding protein RAD 92.3 0.064 2.2E-06 47.9 2.8 22 407-428 3-24 (166)
297 1rj9_A FTSY, signal recognitio 92.3 0.1 3.6E-06 52.9 4.7 25 406-430 102-126 (304)
298 3gfo_A Cobalt import ATP-bindi 92.3 0.048 1.6E-06 54.6 2.1 27 403-429 31-57 (275)
299 4dsu_A GTPase KRAS, isoform 2B 92.3 0.07 2.4E-06 48.6 3.1 23 407-429 5-27 (189)
300 2gk6_A Regulator of nonsense t 92.3 0.15 5.3E-06 56.8 6.5 25 406-430 195-219 (624)
301 2efe_B Small GTP-binding prote 92.3 0.071 2.4E-06 48.3 3.1 23 407-429 13-35 (181)
302 3d3q_A TRNA delta(2)-isopenten 92.3 0.071 2.4E-06 55.0 3.4 24 407-430 8-31 (340)
303 2qi9_C Vitamin B12 import ATP- 92.3 0.05 1.7E-06 53.6 2.2 28 403-430 23-50 (249)
304 3clv_A RAB5 protein, putative; 92.2 0.074 2.5E-06 48.9 3.2 23 407-429 8-30 (208)
305 2ixe_A Antigen peptide transpo 92.2 0.051 1.8E-06 54.2 2.2 28 403-430 42-69 (271)
306 2cxx_A Probable GTP-binding pr 92.2 0.066 2.3E-06 48.9 2.8 22 408-429 3-24 (190)
307 4g1u_C Hemin import ATP-bindin 92.2 0.051 1.7E-06 54.1 2.2 28 403-430 34-61 (266)
308 2wjg_A FEOB, ferrous iron tran 92.2 0.073 2.5E-06 48.7 3.1 23 407-429 8-30 (188)
309 2oil_A CATX-8, RAS-related pro 92.2 0.073 2.5E-06 49.1 3.1 23 407-429 26-48 (193)
310 3kkq_A RAS-related protein M-R 92.2 0.072 2.5E-06 48.5 3.0 23 407-429 19-41 (183)
311 1pzn_A RAD51, DNA repair and r 92.2 0.15 5.2E-06 52.7 5.8 28 403-430 128-155 (349)
312 2a9k_A RAS-related protein RAL 92.2 0.075 2.6E-06 48.3 3.1 23 407-429 19-41 (187)
313 3kta_A Chromosome segregation 92.2 0.072 2.5E-06 49.0 3.0 23 408-430 28-50 (182)
314 2g6b_A RAS-related protein RAB 92.1 0.076 2.6E-06 48.1 3.1 23 407-429 11-33 (180)
315 2olj_A Amino acid ABC transpor 92.1 0.054 1.8E-06 53.9 2.2 28 403-430 47-74 (263)
316 3con_A GTPase NRAS; structural 92.1 0.076 2.6E-06 48.8 3.1 23 407-429 22-44 (190)
317 3b9q_A Chloroplast SRP recepto 92.1 0.059 2E-06 54.7 2.6 26 405-430 99-124 (302)
318 3zvl_A Bifunctional polynucleo 92.1 0.064 2.2E-06 56.9 2.8 25 406-430 258-282 (416)
319 2i1q_A DNA repair and recombin 92.0 0.17 5.9E-06 51.3 6.0 26 404-429 96-121 (322)
320 2nq2_C Hypothetical ABC transp 92.0 0.055 1.9E-06 53.4 2.1 28 403-430 28-55 (253)
321 1vpl_A ABC transporter, ATP-bi 92.0 0.057 2E-06 53.4 2.2 28 403-430 38-65 (256)
322 2jeo_A Uridine-cytidine kinase 92.0 0.072 2.5E-06 51.9 2.9 29 402-430 21-49 (245)
323 2f1r_A Molybdopterin-guanine d 92.0 0.072 2.4E-06 49.4 2.7 37 407-444 3-39 (171)
324 3ake_A Cytidylate kinase; CMP 92.0 0.086 2.9E-06 49.3 3.3 23 408-430 4-26 (208)
325 1uj2_A Uridine-cytidine kinase 91.9 0.085 2.9E-06 51.6 3.4 23 408-430 24-46 (252)
326 2bov_A RAla, RAS-related prote 91.9 0.079 2.7E-06 49.2 3.0 23 407-429 15-37 (206)
327 2yz2_A Putative ABC transporte 91.9 0.059 2E-06 53.6 2.2 27 403-429 30-56 (266)
328 1m7b_A RND3/RHOE small GTP-bin 91.9 0.084 2.9E-06 48.4 3.1 23 407-429 8-30 (184)
329 3tw8_B RAS-related protein RAB 91.9 0.076 2.6E-06 48.0 2.8 23 407-429 10-32 (181)
330 2ihy_A ABC transporter, ATP-bi 91.9 0.059 2E-06 54.1 2.2 28 403-430 44-71 (279)
331 3bwd_D RAC-like GTP-binding pr 91.9 0.097 3.3E-06 47.4 3.5 24 406-429 8-31 (182)
332 1mh1_A RAC1; GTP-binding, GTPa 91.9 0.082 2.8E-06 48.0 3.0 23 407-429 6-28 (186)
333 2gf9_A RAS-related protein RAB 91.9 0.084 2.9E-06 48.5 3.1 23 407-429 23-45 (189)
334 3lda_A DNA repair protein RAD5 91.9 0.21 7.3E-06 52.6 6.5 26 403-428 175-200 (400)
335 1pui_A ENGB, probable GTP-bind 91.8 0.036 1.2E-06 52.0 0.5 25 404-428 24-48 (210)
336 1vht_A Dephospho-COA kinase; s 91.8 0.077 2.6E-06 50.4 2.8 23 406-428 4-26 (218)
337 1z06_A RAS-related protein RAB 91.8 0.086 3E-06 48.5 3.1 23 407-429 21-43 (189)
338 1moz_A ARL1, ADP-ribosylation 91.8 0.056 1.9E-06 49.2 1.8 24 405-428 17-40 (183)
339 2wsm_A Hydrogenase expression/ 91.7 0.17 5.9E-06 47.8 5.2 25 406-430 30-54 (221)
340 2fg5_A RAB-22B, RAS-related pr 91.7 0.087 3E-06 48.7 3.0 23 407-429 24-46 (192)
341 1u94_A RECA protein, recombina 91.7 0.22 7.4E-06 51.7 6.3 38 405-443 62-99 (356)
342 3ihw_A Centg3; RAS, centaurin, 91.7 0.095 3.2E-06 48.4 3.2 23 407-429 21-43 (184)
343 1tq4_A IIGP1, interferon-induc 91.7 0.12 4.2E-06 54.7 4.5 35 395-429 58-92 (413)
344 3dz8_A RAS-related protein RAB 91.7 0.092 3.1E-06 48.5 3.1 23 407-429 24-46 (191)
345 3t5g_A GTP-binding protein RHE 91.6 0.092 3.1E-06 47.7 3.0 23 407-429 7-29 (181)
346 3fvq_A Fe(3+) IONS import ATP- 91.6 0.075 2.6E-06 55.3 2.6 27 403-429 27-53 (359)
347 2npi_A Protein CLP1; CLP1-PCF1 91.6 0.11 3.6E-06 56.0 3.9 32 399-430 131-162 (460)
348 1zj6_A ADP-ribosylation factor 91.6 0.13 4.3E-06 47.3 4.0 25 405-429 15-39 (187)
349 1x3s_A RAS-related protein RAB 91.6 0.095 3.2E-06 48.1 3.1 23 407-429 16-38 (195)
350 3c5c_A RAS-like protein 12; GD 91.6 0.098 3.4E-06 48.3 3.2 23 407-429 22-44 (187)
351 1zd9_A ADP-ribosylation factor 91.6 0.096 3.3E-06 48.3 3.1 24 406-429 22-45 (188)
352 3tkl_A RAS-related protein RAB 91.5 0.096 3.3E-06 48.2 3.1 23 407-429 17-39 (196)
353 2a5j_A RAS-related protein RAB 91.5 0.098 3.4E-06 48.3 3.1 23 407-429 22-44 (191)
354 3l0o_A Transcription terminati 91.5 0.17 5.8E-06 53.1 5.1 34 397-430 164-199 (427)
355 1zbd_A Rabphilin-3A; G protein 91.5 0.093 3.2E-06 48.8 3.0 23 407-429 9-31 (203)
356 1vg8_A RAS-related protein RAB 91.5 0.098 3.3E-06 48.7 3.1 23 407-429 9-31 (207)
357 1m2o_B GTP-binding protein SAR 91.5 0.1 3.4E-06 48.4 3.2 24 406-429 23-46 (190)
358 2onk_A Molybdate/tungstate ABC 91.4 0.094 3.2E-06 51.3 3.1 24 407-430 25-48 (240)
359 1vma_A Cell division protein F 91.4 0.13 4.4E-06 52.3 4.1 36 406-442 104-139 (306)
360 2bcg_Y Protein YP2, GTP-bindin 91.4 0.097 3.3E-06 48.8 3.0 23 407-429 9-31 (206)
361 3dm5_A SRP54, signal recogniti 91.4 0.21 7.2E-06 53.3 5.9 39 407-446 101-139 (443)
362 2p5s_A RAS and EF-hand domain 91.4 0.1 3.5E-06 48.6 3.1 24 406-429 28-51 (199)
363 2gf0_A GTP-binding protein DI- 91.4 0.098 3.4E-06 48.2 3.0 24 406-429 8-31 (199)
364 2iwr_A Centaurin gamma 1; ANK 91.4 0.082 2.8E-06 47.9 2.4 23 407-429 8-30 (178)
365 1z47_A CYSA, putative ABC-tran 91.3 0.084 2.9E-06 54.8 2.7 27 403-429 38-64 (355)
366 1sq5_A Pantothenate kinase; P- 91.3 0.16 5.4E-06 51.5 4.7 27 404-430 78-104 (308)
367 3nh6_A ATP-binding cassette SU 91.3 0.057 2E-06 54.9 1.4 28 403-430 77-104 (306)
368 3cmu_A Protein RECA, recombina 91.3 0.18 6E-06 63.1 5.9 44 402-446 1077-1120(2050)
369 1ksh_A ARF-like protein 2; sma 91.3 0.077 2.6E-06 48.5 2.1 25 405-429 17-41 (186)
370 3sfz_A APAF-1, apoptotic pepti 91.3 0.32 1.1E-05 57.9 8.1 23 407-429 148-170 (1249)
371 2bbs_A Cystic fibrosis transme 91.3 0.074 2.5E-06 53.7 2.1 28 403-430 61-88 (290)
372 3reg_A RHO-like small GTPase; 91.2 0.11 3.7E-06 48.0 3.1 23 407-429 24-46 (194)
373 2pjz_A Hypothetical protein ST 91.2 0.074 2.5E-06 52.9 2.1 27 403-430 28-54 (263)
374 3p32_A Probable GTPase RV1496/ 91.2 0.17 5.7E-06 52.4 4.8 38 408-446 81-118 (355)
375 1q3t_A Cytidylate kinase; nucl 91.2 0.12 4E-06 50.0 3.5 26 405-430 15-40 (236)
376 2qag_B Septin-6, protein NEDD5 91.2 0.077 2.6E-06 56.4 2.3 32 398-429 32-65 (427)
377 2h17_A ADP-ribosylation factor 91.2 0.089 3.1E-06 48.1 2.5 24 406-429 21-44 (181)
378 2grj_A Dephospho-COA kinase; T 91.2 0.15 5.3E-06 48.0 4.2 24 407-430 13-36 (192)
379 1w36_D RECD, exodeoxyribonucle 91.2 0.12 4E-06 57.7 3.9 26 405-430 163-188 (608)
380 2fh5_B SR-beta, signal recogni 91.2 0.11 3.9E-06 48.7 3.3 24 406-429 7-30 (214)
381 3e70_C DPA, signal recognition 91.1 0.19 6.7E-06 51.5 5.2 26 405-430 128-153 (328)
382 2f7s_A C25KG, RAS-related prot 91.1 0.14 4.6E-06 48.3 3.8 23 407-429 26-48 (217)
383 2it1_A 362AA long hypothetical 91.1 0.091 3.1E-06 54.7 2.7 27 403-429 26-52 (362)
384 2yyz_A Sugar ABC transporter, 91.1 0.091 3.1E-06 54.7 2.7 27 403-429 26-52 (359)
385 3rlf_A Maltose/maltodextrin im 91.1 0.092 3.1E-06 55.1 2.7 27 403-429 26-52 (381)
386 3oes_A GTPase rhebl1; small GT 91.1 0.11 3.8E-06 48.4 3.0 24 406-429 24-47 (201)
387 3lxx_A GTPase IMAP family memb 91.1 0.1 3.6E-06 50.3 2.9 23 407-429 30-52 (239)
388 2q6t_A DNAB replication FORK h 91.0 0.23 8E-06 52.9 5.9 50 403-454 197-246 (444)
389 1odf_A YGR205W, hypothetical 3 91.0 0.12 4E-06 52.1 3.3 23 408-430 33-55 (290)
390 3aez_A Pantothenate kinase; tr 91.0 0.095 3.3E-06 53.4 2.6 27 404-430 88-114 (312)
391 2og2_A Putative signal recogni 90.9 0.094 3.2E-06 54.5 2.6 26 405-430 156-181 (359)
392 1fzq_A ADP-ribosylation factor 90.9 0.11 3.7E-06 47.7 2.8 24 406-429 16-39 (181)
393 3cph_A RAS-related protein SEC 90.9 0.12 4.2E-06 48.2 3.2 24 406-429 20-43 (213)
394 2ew1_A RAS-related protein RAB 90.9 0.12 3.9E-06 48.7 3.0 23 407-429 27-49 (201)
395 2o52_A RAS-related protein RAB 90.9 0.11 3.8E-06 48.5 2.9 23 407-429 26-48 (200)
396 1v43_A Sugar-binding transport 90.9 0.099 3.4E-06 54.7 2.7 27 403-429 34-60 (372)
397 1g29_1 MALK, maltose transport 90.9 0.098 3.4E-06 54.7 2.7 27 403-429 26-52 (372)
398 2cjw_A GTP-binding protein GEM 90.9 0.13 4.3E-06 47.9 3.2 22 407-428 7-28 (192)
399 3gd7_A Fusion complex of cysti 90.9 0.097 3.3E-06 55.1 2.6 26 403-428 44-69 (390)
400 1w4r_A Thymidine kinase; type 90.9 0.19 6.6E-06 47.6 4.4 93 405-507 19-117 (195)
401 3d31_A Sulfate/molybdate ABC t 90.8 0.079 2.7E-06 54.9 1.9 27 403-429 23-49 (348)
402 4ag6_A VIRB4 ATPase, type IV s 90.8 0.19 6.6E-06 52.4 4.9 26 405-430 34-59 (392)
403 1lw7_A Transcriptional regulat 90.8 0.1 3.5E-06 54.1 2.7 25 406-430 170-194 (365)
404 1gwn_A RHO-related GTP-binding 90.7 0.13 4.3E-06 48.5 3.1 24 406-429 28-51 (205)
405 2fu5_C RAS-related protein RAB 90.7 0.074 2.5E-06 48.5 1.4 23 407-429 9-31 (183)
406 3t1o_A Gliding protein MGLA; G 90.7 0.13 4.5E-06 47.0 3.1 23 407-429 15-37 (198)
407 3v9p_A DTMP kinase, thymidylat 90.7 0.14 4.7E-06 49.7 3.4 41 404-444 23-66 (227)
408 2r6a_A DNAB helicase, replicat 90.6 0.15 5.1E-06 54.6 3.9 49 403-453 200-248 (454)
409 2q3h_A RAS homolog gene family 90.6 0.13 4.3E-06 47.8 3.0 25 405-429 19-43 (201)
410 3kl4_A SRP54, signal recogniti 90.6 0.16 5.5E-06 54.1 4.1 38 406-444 97-134 (433)
411 2h92_A Cytidylate kinase; ross 90.6 0.16 5.6E-06 48.0 3.8 25 406-430 3-27 (219)
412 2atx_A Small GTP binding prote 90.5 0.13 4.4E-06 47.4 2.9 23 407-429 19-41 (194)
413 1h65_A Chloroplast outer envel 90.5 0.22 7.4E-06 49.2 4.7 37 393-429 23-62 (270)
414 2fv8_A H6, RHO-related GTP-bin 90.5 0.13 4.5E-06 48.2 3.0 24 406-429 25-48 (207)
415 3e2i_A Thymidine kinase; Zn-bi 90.5 0.47 1.6E-05 45.7 6.8 94 404-507 26-128 (219)
416 1f2t_A RAD50 ABC-ATPase; DNA d 90.5 0.14 4.9E-06 46.0 3.1 23 408-430 25-47 (149)
417 3eph_A TRNA isopentenyltransfe 90.5 0.13 4.4E-06 54.2 3.2 24 407-430 3-26 (409)
418 3cmw_A Protein RECA, recombina 90.5 0.33 1.1E-05 59.9 7.1 26 405-430 731-756 (1706)
419 3cbq_A GTP-binding protein REM 90.4 0.11 3.8E-06 48.5 2.4 21 407-427 24-44 (195)
420 1f6b_A SAR1; gtpases, N-termin 90.4 0.12 4.1E-06 48.3 2.6 23 406-428 25-47 (198)
421 2wjy_A Regulator of nonsense t 90.4 0.3 1E-05 56.2 6.4 25 406-430 371-395 (800)
422 2b6h_A ADP-ribosylation factor 90.4 0.12 4.1E-06 47.9 2.6 23 406-428 29-51 (192)
423 3k53_A Ferrous iron transport 90.3 0.12 4.3E-06 51.0 2.8 23 407-429 4-26 (271)
424 4tmk_A Protein (thymidylate ki 90.3 0.3 1E-05 46.8 5.4 37 406-443 3-40 (213)
425 2il1_A RAB12; G-protein, GDP, 90.3 0.13 4.5E-06 47.5 2.8 22 407-428 27-48 (192)
426 2www_A Methylmalonic aciduria 90.3 0.2 6.9E-06 51.7 4.4 24 407-430 75-98 (349)
427 1qde_A EIF4A, translation init 90.3 0.49 1.7E-05 44.7 6.8 27 404-430 49-76 (224)
428 2orv_A Thymidine kinase; TP4A 90.2 0.61 2.1E-05 45.3 7.5 91 405-506 18-115 (234)
429 2rcn_A Probable GTPase ENGC; Y 90.2 0.17 5.9E-06 52.5 3.8 26 405-430 214-239 (358)
430 3llu_A RAS-related GTP-binding 90.2 0.13 4.5E-06 47.7 2.7 24 406-429 20-43 (196)
431 2j1l_A RHO-related GTP-binding 90.2 0.14 4.7E-06 48.4 2.9 23 407-429 35-57 (214)
432 2yhs_A FTSY, cell division pro 90.2 0.14 4.9E-06 55.3 3.3 26 405-430 292-317 (503)
433 2gco_A H9, RHO-related GTP-bin 90.1 0.15 5.1E-06 47.5 3.0 24 406-429 25-48 (201)
434 3cr8_A Sulfate adenylyltranfer 90.1 0.11 3.7E-06 57.2 2.3 29 403-431 366-394 (552)
435 2qu8_A Putative nucleolar GTP- 90.1 0.12 4.2E-06 49.3 2.4 23 407-429 30-52 (228)
436 1oxx_K GLCV, glucose, ABC tran 90.0 0.082 2.8E-06 54.9 1.2 27 403-429 28-54 (353)
437 2f6r_A COA synthase, bifunctio 90.0 0.14 4.9E-06 51.1 3.0 21 408-428 77-97 (281)
438 2hup_A RAS-related protein RAB 90.0 0.16 5.5E-06 47.4 3.1 23 407-429 30-52 (201)
439 4bas_A ADP-ribosylation factor 90.0 0.15 5.1E-06 46.9 2.9 24 406-429 17-40 (199)
440 3lv8_A DTMP kinase, thymidylat 90.0 0.26 9E-06 48.0 4.7 32 405-437 26-57 (236)
441 2h57_A ADP-ribosylation factor 89.9 0.12 4.2E-06 47.5 2.2 24 406-429 21-44 (190)
442 3lxw_A GTPase IMAP family memb 89.9 0.15 5.2E-06 49.8 3.0 24 406-429 21-44 (247)
443 4gzl_A RAS-related C3 botulinu 89.9 0.15 5.3E-06 47.7 2.9 24 406-429 30-53 (204)
444 1tf7_A KAIC; homohexamer, hexa 89.8 0.13 4.3E-06 56.3 2.5 24 403-426 36-59 (525)
445 2x77_A ADP-ribosylation factor 89.8 0.088 3E-06 48.3 1.1 24 405-428 21-44 (189)
446 2qnr_A Septin-2, protein NEDD5 89.8 0.14 4.9E-06 51.7 2.7 22 407-428 19-40 (301)
447 2j0v_A RAC-like GTP-binding pr 89.7 0.17 5.9E-06 47.3 3.1 23 407-429 10-32 (212)
448 3tqc_A Pantothenate kinase; bi 89.7 0.17 6E-06 51.7 3.3 23 408-430 94-116 (321)
449 2obl_A ESCN; ATPase, hydrolase 89.7 0.14 4.9E-06 52.9 2.7 30 401-430 66-95 (347)
450 3tui_C Methionine import ATP-b 89.6 0.15 5E-06 53.2 2.7 27 403-429 51-77 (366)
451 2qm8_A GTPase/ATPase; G protei 89.6 0.19 6.4E-06 51.7 3.5 27 404-430 53-79 (337)
452 3cpj_B GTP-binding protein YPT 89.5 0.18 6.1E-06 47.9 3.1 23 407-429 14-36 (223)
453 2yv5_A YJEQ protein; hydrolase 89.5 0.18 6.1E-06 51.0 3.2 25 405-430 164-188 (302)
454 3io5_A Recombination and repai 89.5 0.34 1.2E-05 49.5 5.2 23 408-430 30-52 (333)
455 1g5t_A COB(I)alamin adenosyltr 89.5 1.2 4.1E-05 42.1 8.7 40 406-446 28-67 (196)
456 1hv8_A Putative ATP-dependent 89.5 0.5 1.7E-05 47.7 6.6 30 398-427 36-65 (367)
457 2xtp_A GTPase IMAP family memb 89.5 0.16 5.6E-06 49.5 2.9 24 406-429 22-45 (260)
458 3iby_A Ferrous iron transport 89.3 0.18 6.2E-06 49.6 3.0 23 407-429 2-24 (256)
459 3q3j_B RHO-related GTP-binding 89.3 0.2 6.8E-06 47.4 3.2 24 406-429 27-50 (214)
460 2g3y_A GTP-binding protein GEM 89.3 0.19 6.5E-06 47.9 3.1 22 407-428 38-59 (211)
461 1yrb_A ATP(GTP)binding protein 89.2 0.38 1.3E-05 46.7 5.3 37 408-446 16-52 (262)
462 2v3c_C SRP54, signal recogniti 89.2 0.18 6E-06 53.8 3.0 37 407-444 100-136 (432)
463 2axn_A 6-phosphofructo-2-kinas 89.2 0.19 6.5E-06 54.9 3.3 24 407-430 36-59 (520)
464 3b6e_A Interferon-induced heli 89.1 0.26 9E-06 46.0 3.9 29 399-428 42-70 (216)
465 2xzl_A ATP-dependent helicase 89.1 0.29 9.9E-06 56.3 4.9 25 406-430 375-399 (802)
466 2p67_A LAO/AO transport system 89.0 0.27 9.2E-06 50.5 4.2 26 405-430 55-80 (341)
467 1zu4_A FTSY; GTPase, signal re 89.0 0.25 8.6E-06 50.4 3.9 38 405-443 104-141 (320)
468 1bif_A 6-phosphofructo-2-kinas 89.0 0.25 8.5E-06 53.1 4.1 25 406-430 39-63 (469)
469 4dkx_A RAS-related protein RAB 89.0 0.22 7.4E-06 47.8 3.2 22 408-429 15-36 (216)
470 2ocp_A DGK, deoxyguanosine kin 89.0 0.2 6.7E-06 48.5 2.9 24 407-430 3-26 (241)
471 2dpy_A FLII, flagellum-specifi 88.9 0.18 6.3E-06 53.8 2.9 30 401-430 152-181 (438)
472 4a1f_A DNAB helicase, replicat 88.9 0.42 1.4E-05 49.2 5.5 51 403-456 43-93 (338)
473 3a1s_A Iron(II) transport prot 88.9 0.21 7.1E-06 49.2 3.1 23 407-429 6-28 (258)
474 1t9h_A YLOQ, probable GTPase E 88.8 0.1 3.6E-06 53.0 0.9 25 405-429 172-196 (307)
475 1u0l_A Probable GTPase ENGC; p 88.7 0.23 7.8E-06 50.1 3.3 26 405-430 168-193 (301)
476 3hjn_A DTMP kinase, thymidylat 88.7 0.48 1.6E-05 44.7 5.4 39 409-448 3-41 (197)
477 3t5d_A Septin-7; GTP-binding p 88.6 0.19 6.6E-06 49.7 2.7 22 407-428 9-30 (274)
478 2yc2_C IFT27, small RAB-relate 88.6 0.094 3.2E-06 48.6 0.4 23 407-429 21-43 (208)
479 3b1v_A Ferrous iron uptake tra 88.5 0.23 7.7E-06 49.5 3.1 23 407-429 4-26 (272)
480 3tmk_A Thymidylate kinase; pho 88.4 0.27 9.2E-06 47.3 3.4 27 405-431 4-30 (216)
481 1knx_A Probable HPR(Ser) kinas 88.4 0.19 6.6E-06 51.1 2.5 23 406-428 147-169 (312)
482 3b5x_A Lipid A export ATP-bind 88.4 0.25 8.5E-06 54.7 3.6 30 401-430 364-393 (582)
483 2gxq_A Heat resistant RNA depe 88.3 0.48 1.6E-05 44.0 5.1 28 403-430 35-63 (207)
484 3gj0_A GTP-binding nuclear pro 88.3 0.13 4.6E-06 48.6 1.2 22 407-428 16-37 (221)
485 1a7j_A Phosphoribulokinase; tr 88.3 0.14 4.9E-06 51.4 1.5 24 407-430 6-29 (290)
486 1p5z_B DCK, deoxycytidine kina 88.2 0.12 4.2E-06 50.7 1.0 27 404-430 22-48 (263)
487 1e9r_A Conjugal transfer prote 88.2 0.29 1E-05 51.7 3.9 26 405-430 52-77 (437)
488 4dhe_A Probable GTP-binding pr 88.1 0.13 4.4E-06 48.6 1.0 24 406-429 29-52 (223)
489 1nij_A Hypothetical protein YJ 88.1 0.21 7.1E-06 50.8 2.6 21 409-429 7-27 (318)
490 2ius_A DNA translocase FTSK; n 88.0 0.3 1E-05 53.1 3.9 25 405-429 166-190 (512)
491 1j8m_F SRP54, signal recogniti 88.0 0.39 1.3E-05 48.4 4.5 41 406-447 98-138 (297)
492 2xau_A PRE-mRNA-splicing facto 88.0 0.34 1.2E-05 55.5 4.5 32 397-428 100-131 (773)
493 3lfu_A DNA helicase II; SF1 he 87.9 0.36 1.2E-05 53.6 4.6 41 405-445 21-64 (647)
494 2qag_C Septin-7; cell cycle, c 87.9 0.21 7.3E-06 53.0 2.6 22 408-429 33-54 (418)
495 1c9k_A COBU, adenosylcobinamid 87.8 0.27 9.4E-06 45.9 3.0 21 409-429 2-22 (180)
496 1tf7_A KAIC; homohexamer, hexa 87.7 0.33 1.1E-05 52.9 4.1 28 403-430 278-305 (525)
497 3qf7_A RAD50; ABC-ATPase, ATPa 87.6 0.27 9.1E-06 51.1 3.1 20 408-427 25-44 (365)
498 1ega_A Protein (GTP-binding pr 87.5 0.27 9.4E-06 49.5 3.0 22 408-429 10-31 (301)
499 3bgw_A DNAB-like replicative h 87.5 0.46 1.6E-05 50.7 4.9 49 403-454 194-242 (444)
500 3gmt_A Adenylate kinase; ssgci 87.5 0.28 9.5E-06 47.7 2.9 24 407-430 9-32 (230)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=1.1e-118 Score=1121.79 Aligned_cols=566 Identities=32% Similarity=0.579 Sum_probs=486.2
Q ss_pred CcccccCcceeeeccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEecCchHHHHHHhcCCCCcchhcchhhhc
Q psy17974 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPHLGKCF 80 (583)
Q Consensus 1 m~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~l~~yLe~kR~~FpRf~Fls~~ell~il~~~~~~~~i~~~l~k~f 80 (583)
|+++.++|+|+++|+.+++++.|+++++.||.|||+|++|||+||.+|||||||||+|||+|||+++||..||+||+|||
T Consensus 284 m~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLE~KR~~FPRFyFlSd~eLLeILs~~~dp~~vq~hl~K~F 363 (3245)
T 3vkg_A 284 LKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLLEIIGNSKDIIKIQKHFRKMF 363 (3245)
T ss_dssp HHHHHHSCBHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHGGGCGGGTGGGGGGTC
T ss_pred HHHHhcCCceEeecCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhccCcHHHHHHHHcCCChHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCc------------------------------CccHHHHHH----HHHHhH-----------H-------------
Q psy17974 81 DGIAGW------------------------------TPYVKSWLN----LLFDKV-----------P------------- 102 (583)
Q Consensus 81 ~~i~~~------------------------------~~~ve~WL~----~m~~tl-----------~------------- 102 (583)
+||+++ .|.||.||+ +|+.|| .
T Consensus 364 ~~I~~l~f~~~~~~i~~m~S~eGE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~~~~~~w 443 (3245)
T 3vkg_A 364 AGLANLTLDDEKTTIIGMSSAEGETVTFKKPISIANGPKIHEWLTMVESEMKSTLATLLSESLQHFNQVDVNDHSKYSEW 443 (3245)
T ss_dssp SSCCEEEECTTSCEEEEEECTTSCEEEEEEEEESSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred hhhheEEecCCCCEEEEEEcCCCCEEEeCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcccHHHH
Confidence 999932 478999998 777777 0
Q ss_pred -------------------------------------HHHH-------HHH---------------HHHHhccc-----c
Q psy17974 103 -------------------------------------LIRE-------EFE---------------EVILALFE-----K 118 (583)
Q Consensus 103 -------------------------------------~~~~-------~l~---------------~~i~~Li~-----r 118 (583)
.+.. .++ .++++||+ |
T Consensus 444 ~~~~p~Qv~l~~~qi~wT~~ve~al~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~v~~~l~~~~R~kl~~Lit~~VH~R 523 (3245)
T 3vkg_A 444 VDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQMILNNLADSVLQDLSAQKRKKFEHLITELVHQR 523 (3245)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHheeHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 000 23444444 3
Q ss_pred cc------------------------------------------------------------------------------
Q psy17974 119 YV------------------------------------------------------------------------------ 120 (583)
Q Consensus 119 dv------------------------------------------------------------------------------ 120 (583)
||
T Consensus 524 Dvv~~L~~~~~v~~~~dF~W~~qlRyy~~~~~~~~~~~~~v~~~~~~f~YgyEYlG~~~rLViTPLTdrcy~tl~~Al~~ 603 (3245)
T 3vkg_A 524 DVVRQLQKCKNLTGNKDFDWLYHMRYYYDATQENVLHKLVIHMANATFYYGFEYLGIGERLVQTPLTDRCYLTLTQALES 603 (3245)
T ss_dssp HHHHHHHTCCSCCSTTCHHHHTSEEEEECSSSSSSGGGEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCcchhHHHhhhheeeccccCCcCceEEEEEcCceecCccccCCCCCCCcCChHHHHHHHHHHHHHHh
Confidence 33
Q ss_pred ----------------------------------cchhhH--HhHhh--------------------------hhcce--
Q psy17974 121 ----------------------------------DPGLNF--VRKFC--------------------------ATAIH-- 136 (583)
Q Consensus 121 ----------------------------------~e~ld~--~~r~~--------------------------a~qi~-- 136 (583)
++++|| |+|+| +||+.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I 683 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTI 683 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 999999 99986 44443
Q ss_pred ----------------eeeeecccccEEEEecCCCCCCCCCchHHHhcccceeeecCCcchhHHHHhhcccccchHHHHH
Q psy17974 137 ----------------QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQ 200 (583)
Q Consensus 137 ----------------~~I~L~~~~~ifiTmnp~y~gr~eLP~nlk~lfr~~~m~~pd~~~I~e~~l~~~gf~~a~~l~~ 200 (583)
++|+++|+|+|||||||||+||+|||||||++||||+|++||+.+|+||+|+++||.+|+.||+
T Consensus 684 ~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~ 763 (3245)
T 3vkg_A 684 QVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAEVLAG 763 (3245)
T ss_dssp HHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHHHHHcccchHHHHHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCccccccchhHHHHHHHhhhhhhhC--------CC------------CchHHHHHHHHHhcCCCc
Q psy17974 201 KMVNMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRAN--------PD------------KNEDVVLIRALRDSNLPK 260 (583)
Q Consensus 201 k~~~~~~~~~~~ls~q~hydfglR~lk~vl~~a~~~~~~~--------~~------------~~E~~i~l~al~d~~lPK 260 (583)
|++.+|++|+||||+|+|||||||||||||++||++||+. |+ .+|+.+++|||+|+|+||
T Consensus 764 k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpK 843 (3245)
T 3vkg_A 764 KIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPK 843 (3245)
T ss_dssp HHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999988 55 579999999999999999
Q ss_pred ccccccccc-----------------------------------------------------------------------
Q psy17974 261 FLADDAGLF----------------------------------------------------------------------- 269 (583)
Q Consensus 261 l~~~D~~lF----------------------------------------------------------------------- 269 (583)
|+.+|+|+|
T Consensus 844 l~~~D~plF~~li~DlFPgv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~ 923 (3245)
T 3vkg_A 844 LVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW 923 (3245)
T ss_dssp SCGGGHHHHHHHHHHHSTTCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH
T ss_pred CchhhHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH
Confidence 999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy17974 270 -------------------------------------------------------------------------------- 269 (583)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (583)
T Consensus 924 ~~L~~al~~l~~~~~~~~~iNPKait~~eLyG~~d~~T~EW~DGvls~i~R~~~~~~~~~~~~~~WIvfDGpVDa~WIEn 1003 (3245)
T 3vkg_A 924 EVYLEAIEQVDNIKSEAHVMDPKAITKDQLFGSLDLTTREWTDGLFTATLRRIIDNVRGESTKRHWIIFDGDVDPEWVEN 1003 (3245)
T ss_dssp HHHHHHHTTTTTCEEEEEEECTTTSCHHHHHEEECTTTCCEEECHHHHHHHHHHTTSSSGGGEEEEEEEESCCCHHHHTT
T ss_pred HHHHHHHHHhhCCCceEEEECCCCCchhhhceeecCCCCeeeccHHHHHHHHHHhcccCCCCCceEEEECCCCCHHHHHH
Confidence
Q ss_pred ---------------------------------------------------cch----------hh--------------
Q psy17974 270 ---------------------------------------------------LVD----------VS-------------- 274 (583)
Q Consensus 270 ---------------------------------------------------~~~----------~~-------------- 274 (583)
..+ ++
T Consensus 1004 lNsVLDDNK~LtL~nGErI~l~~~~~liFEv~dL~~ASPATVSRcGmVy~~~~~l~~~~~~~swl~~~~~~~~~~~~~~~ 1083 (3245)
T 3vkg_A 1004 LNSLLDDNKLLTLPNGERLALPNNVRVMFEVQDLKYATLATISRCGMVWFSEEILTTQMIFQNYLDTLSNEPFDPQEKEQ 1083 (3245)
T ss_dssp THHHHSSSCEECCTTSCCEECCTTEEEEEEESCCTTCCHHHHHTSEEEECCTTSSCHHHHHHHHHHHHTTSCSCHHHHHH
T ss_pred HHHHhcCCCeeecCCCCeeecCCCCEEEEEeccccccChhhheeeeEEEEcccccCchHHHHHHHHhCccccccchhhhh
Confidence 000 00
Q ss_pred -----------------------------------------------hHHHHHHHHHHccCCCC----------CCCC--
Q psy17974 275 -----------------------------------------------KARMICSLMESTLIEPG----------MLDR-- 295 (583)
Q Consensus 275 -----------------------------------------------~v~s~~~ll~~ll~~~~----------~~~~-- 295 (583)
....+..+++.++.... ....
T Consensus 1084 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~l~~~~~~~~i~ 1163 (3245)
T 3vkg_A 1084 QKRNENAQLQQQQQTTITSPILTSPPTTSSSSRSTTSTTSMIPAGLKVQKECAAIISQYFEPGGLVHKVLEDAGQRPHIM 1163 (3245)
T ss_dssp HHHHHTC----------------------------------CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHTSCCSS
T ss_pred hcccccchhhhcccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCccc
Confidence 00001111211110000 0000
Q ss_pred --------------------------------CCCCCChhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCC
Q psy17974 296 --------------------------------SHNSENTGPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPN 343 (583)
Q Consensus 296 --------------------------------~~~~~~~~~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~ 343 (583)
..+.+..+.+++.+|+||++|||||+++.++|.+||+|+++...
T Consensus 1164 ~~~~~~~v~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~faliWs~Gg~l~~~~R~~F~~~~~~~~~---- 1239 (3245)
T 3vkg_A 1164 DFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSNYITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAI---- 1239 (3245)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHTTCS----
T ss_pred CccHHHHHHHHHHHHHHHhhhhcccccccccCCCCHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhcC----
Confidence 00111233467889999999999999999999999999999765
Q ss_pred CCCC-CCCCcceEEEECCCCceeeccccCCccccCCC-CCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHH
Q psy17974 344 VSLG-KDPDLRSYFVSKDTKQLTPWTTITPIFTYDPT-MPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTV 421 (583)
Q Consensus 344 ~~~P-~~~~vfdy~~d~~~~~w~~W~~~~~~~~~~~~-~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~ 421 (583)
.++| .+++|||||+|.+++.|.+|.+.+|.+.+++. .++.+++|||+||+|+.++++.++..++||||+||||||||+
T Consensus 1240 ~~~p~~~~~v~Dy~~~~~~~~w~~W~~~v~~~~~~~~~~~~~~ilVPT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1240 TPVPANTIPLLDYSVSIDDANWSLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp SCCCCTTSCGGGEEECTTTCSEEETTCCC---CCCSTTTTCTTCCCCCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred CCCCCCCCceEEEEEECCCCeeeehhhcCCccccCCccCCcccceecchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 3455 46899999999999999999999999988875 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC---c-cccCCC-CCeEEEEecCCCCCCcccCCCCCh
Q psy17974 422 VARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK---T-LLGAPL-GKRLAVFVDDVNMPKLETYGAQPP 496 (583)
Q Consensus 422 li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~---~-~~~p~~-gk~~vlfiDDln~p~~d~yg~q~~ 496 (583)
++++++..+. ++.++.+|||++|+++.+|+.++++++++++ | +++|+. ||++|+||||+|||..|+||+|+|
T Consensus 1320 li~~~L~~l~---~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ 1396 (3245)
T 3vkg_A 1320 TLTSTLRAFP---DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRV 1396 (3245)
T ss_dssp HHHHHGGGCT---TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHH
T ss_pred HHHHHHHhCC---CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccH
Confidence 9999888763 4678899999999999999999999987653 4 567774 999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhccccc
Q psy17974 497 IELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 497 lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
+|+|||++|+|||||+++.+|+.++|+++|||||||+ |||+++++||+|||+++++++|+.+++.+||++++.+++.
T Consensus 1397 ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~ 1474 (3245)
T 3vkg_A 1397 ITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMK 1474 (3245)
T ss_dssp HHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998 8999999999999999999999999999999999998875
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=1.4e-107 Score=1020.12 Aligned_cols=564 Identities=28% Similarity=0.470 Sum_probs=487.3
Q ss_pred CcccccCcceeeeccCCChHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEecCchHHHHHHhcCCCCcchhcchhhhc
Q psy17974 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPHLGKCF 80 (583)
Q Consensus 1 m~~~~~~~~v~~~~~~~~~~~~l~~~~~~l~~i~k~l~~yLe~kR~~FpRf~Fls~~ell~il~~~~~~~~i~~~l~k~f 80 (583)
|+++.++|+|+++|+.+++++.|+++++.||.|||+|++|||+||.+|||||||||+|||+|||+++||..||+|++|||
T Consensus 343 m~~~~~~~~v~~~~~~~~~~~~L~~~~~~Le~iqk~L~~yLe~KR~~FPRFyFlsd~eLLeiLs~~~dp~~vq~hl~k~F 422 (2695)
T 4akg_A 343 TTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLLKIIGSGKHHDQVSKFMKKMF 422 (2695)
T ss_dssp HHHHHTTCCSGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHCHHHHHHHHHTTTTSGGGHHHHHHHT
T ss_pred HHHHHhCCCeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceecCcHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCc----------------------------CccHHHHHH----HHHHhH---------------------------
Q psy17974 81 DGIAGW----------------------------TPYVKSWLN----LLFDKV--------------------------- 101 (583)
Q Consensus 81 ~~i~~~----------------------------~~~ve~WL~----~m~~tl--------------------------- 101 (583)
+||+++ ++.||.||+ +|+.||
T Consensus 423 ~~i~~l~f~~~~i~~m~s~egE~v~~~~~v~~~~~~~ve~WL~~le~~m~~tl~~~~~~~~~~~~~~~~~~~w~~~~p~Q 502 (2695)
T 4akg_A 423 GSIESIIFLEDFITGVRSVEGEVLNLNEKIELKDSIQAQEWLNILDTEIKLSVFTQFRDCLGQIKDGTDIEVVVSKYIFQ 502 (2695)
T ss_dssp SSEEEEEECSSEEEEEEETTSCEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSCHH
T ss_pred hhhhhEEecCceEEEEEcCCCCEEEeCCceecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHChHH
Confidence 999832 347999998 788887
Q ss_pred ---------------H--------HHHHH------------------HHHHHHhccc-----ccc---------------
Q psy17974 102 ---------------P--------LIREE------------------FEEVILALFE-----KYV--------------- 120 (583)
Q Consensus 102 ---------------~--------~~~~~------------------l~~~i~~Li~-----rdv--------------- 120 (583)
. ..... ...++++||+ |||
T Consensus 503 v~l~~~qi~wt~~ve~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~li~~~vh~rDvv~~l~~~~v~~~~~f 582 (2695)
T 4akg_A 503 AILLSAQVMWTELVEKCLQTNQFSKYWKEVDMKIKGLLDKLNKSSDNVKKKIEALLVEYLHFNNVIGQLKNCSTKEEARL 582 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchH
Confidence 0 00000 0134556655 444
Q ss_pred --------------------------------------------------------------------------------
Q psy17974 121 -------------------------------------------------------------------------------- 120 (583)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (583)
T Consensus 583 ~W~~qlR~y~~~~~~~~~~~~~v~~~~~~~~YgyEYlG~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~v 662 (2695)
T 4akg_A 583 LWAKVQKFYQKNDTLDDLNSVFISQSGYLLQYKFEYIGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETV 662 (2695)
T ss_dssp HHHHSCEEEECSSCSCGGGTEEEEETTEEEECCCCCCCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH
T ss_pred hHHhcceEEEcCccccccceeEEEEcCeEeeccccccCCCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHH
Confidence
Q ss_pred ----------------cchhhH--HhHhh--------------------------hhcce-----------------eee
Q psy17974 121 ----------------DPGLNF--VRKFC--------------------------ATAIH-----------------QMI 139 (583)
Q Consensus 121 ----------------~e~ld~--~~r~~--------------------------a~qi~-----------------~~I 139 (583)
+|++|+ |+++| ++|+. +++
T Consensus 663 k~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i 742 (2695)
T 4akg_A 663 KAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEET 742 (2695)
T ss_dssp HHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEE
T ss_pred HHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEE
Confidence 888888 88876 33332 579
Q ss_pred eecccccEEEEecCCCCCCCCCchHHHhcccceeeecCCcchhHHHHhhcccccchHHHHHHHHHHHHHHHhhCCCCccc
Q psy17974 140 NLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQDHY 219 (583)
Q Consensus 140 ~L~~~~~ifiTmnp~y~gr~eLP~nlk~lfr~~~m~~pd~~~I~e~~l~~~gf~~a~~l~~k~~~~~~~~~~~ls~q~hy 219 (583)
+++|++++||||||||+||++||+|||++||||+|++||+..|+||+|++.||.+|+.||+|++.+|++|++|+|+|.||
T Consensus 743 ~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hy 822 (2695)
T 4akg_A 743 PLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHY 822 (2695)
T ss_dssp ECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTC
T ss_pred ecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHhhhhhhhCCCCchHHHHHHHHHhcCCCcccccccccc------------------------------
Q psy17974 220 DFGMRAVKSVLVMAGSLKRANPDKNEDVVLIRALRDSNLPKFLADDAGLF------------------------------ 269 (583)
Q Consensus 220 dfglR~lk~vl~~a~~~~~~~~~~~E~~i~l~al~d~~lPKl~~~D~~lF------------------------------ 269 (583)
|||||++|+||+.||++||..+ .|+.++++||+++++|||+.+|.++|
T Consensus 823 dfglRalksvL~~ag~lkr~~~--~e~~~l~~al~~~~lpk~~~~D~~lf~~li~dlFp~~~~~~~~~~l~~~i~~~~~~ 900 (2695)
T 4akg_A 823 HFGLRTLKGVLRNCSPLISEFG--EGEKTVVESLKRVILPSLGDTDELVFKDELSKIFDSAGTPLNSKAIVQCLKDAGQR 900 (2695)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSC--SSHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHCCCCSCCSSSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhccCC--cHHHHHHHHHHHhccccCchhhHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999985 58889999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17974 270 -------------------------------------------------------------------------------- 269 (583)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (583)
T Consensus 901 ~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~e 980 (2695)
T 4akg_A 901 SGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLE 980 (2695)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCC
T ss_pred cCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy17974 270 -------------------------------------------------------------------------------- 269 (583)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (583)
T Consensus 981 W~DGils~~~R~~~~~~~~~~~~~~~WivfDG~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv~dL~~ASP 1060 (2695)
T 4akg_A 981 WRDGLFTSILRRVNDDITGTFKNSRIWVVFDSDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFETDNLDHTTP 1060 (2695)
T ss_dssp EECCSHHHHHHHHHTCCCSSCSSEEEEEEECSCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEESCCTTSCH
T ss_pred EecChHHHHHHHHHhccccccCCCCeEEEECCCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEecccccCCc
Confidence
Q ss_pred ------------cch-------------------------------------------------------------hhhH
Q psy17974 270 ------------LVD-------------------------------------------------------------VSKA 276 (583)
Q Consensus 270 ------------~~~-------------------------------------------------------------~~~v 276 (583)
..+ .+.+
T Consensus 1061 ATVSRcGmvy~~~~~l~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1140 (2695)
T 4akg_A 1061 ATITRCGLLWFSTDVCSISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLVHILGVRTFNKL 1140 (2695)
T ss_dssp HHHHHSEEEECCSCSSCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHSSCCSSCCCHHHHH
T ss_pred cceeeeeEEEecCCcCChHHHHHHHHHhcchhhhhhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHhccCccccchHHHHH
Confidence 000 0000
Q ss_pred HHHHHHHHHccCCCCCCCCCCCCCChhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCCCCCCCCCCCcceEE
Q psy17974 277 RMICSLMESTLIEPGMLDRSHNSENTGPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYF 356 (583)
Q Consensus 277 ~s~~~ll~~ll~~~~~~~~~~~~~~~~~~i~~~f~fa~iWs~Gg~L~~~~r~~Fd~~i~~~~~~~~~~~~P~~~~vfdy~ 356 (583)
.+++.++++++....+.....+....+.+++.+|+||++|||||.++.++|.+|++|+++.+. ...+|. +++|||+
T Consensus 1141 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~iWs~g~~l~~~~R~~f~~~~~~~~~---~~~~p~-~~~~dy~ 1216 (2695)
T 4akg_A 1141 ETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRAFIQTINTYFG---HDSQEL-SDYSTIV 1216 (2695)
T ss_dssp HHHHHHHHHHHHHTCGGGTSSCHHHHHHHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHSC---SSSCCC-CSSCCCB
T ss_pred HHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc---ccCCCC-CCeeEEE
Confidence 011111111110000000000011123456788999999999999999999999999999986 345675 6899999
Q ss_pred EECCCCceeeccccCCccccCC-CCCCccceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCC
Q psy17974 357 VSKDTKQLTPWTTITPIFTYDP-TMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNT 435 (583)
Q Consensus 357 ~d~~~~~w~~W~~~~~~~~~~~-~~~~~~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~ 435 (583)
+|.++++|.+|.+.+|.+.+++ +.++.+++|||+||+|+.++++.+++.++||||+||||||||+++++++... .+
T Consensus 1217 ~~~~~~~w~~W~~~v~~~~~~~~~~~~~~iiVpT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la~~~l~~~---~~ 1293 (2695)
T 4akg_A 1217 IANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNS---SL 1293 (2695)
T ss_dssp CCSSSCCCBCCCCCCCCCCCCSGGGSCSSCCCCCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHHHHHHHSC---SS
T ss_pred EECCCCceeechhcCCCcccCccccCccceeEeccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHhcC---CC
Confidence 9999999999999999988877 5788999999999999999999999999999999999999999999888864 36
Q ss_pred ceEEEEEeccCCChHHHHHHHHhhhhhh---cCccccCC-CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeee
Q psy17974 436 WAALTINFSAQTSSARTQEILEGKLDKR---TKTLLGAP-LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYD 511 (583)
Q Consensus 436 ~~~~~i~fS~~Tt~~~lq~~ie~~l~~~---~~~~~~p~-~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd 511 (583)
+.+..+|||+.|++.++|+.+++.++++ .+.+++|+ +|+++|+||||+|||..|+||+|+++|+|||++|+||||+
T Consensus 1294 ~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd 1373 (2695)
T 4akg_A 1294 YDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWK 1373 (2695)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEEC
T ss_pred CceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEE
Confidence 7889999999999999999999988753 24467875 8999999999999999999999999999999999999999
Q ss_pred cCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhccccc
Q psy17974 512 RDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 512 ~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~~l~ 573 (583)
+.+..|+.++|+++|||||||+ +||+.|++||+|||++++++.|+.+++.+||++++.+++.
T Consensus 1374 ~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~ 1436 (2695)
T 4akg_A 1374 TPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFK 1436 (2695)
T ss_dssp TTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTT
T ss_pred cCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 9888999999999999999997 8999999999999999999999999999999999999985
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=5.2e-12 Score=133.76 Aligned_cols=143 Identities=17% Similarity=0.280 Sum_probs=97.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
+...+.|||+||||||||+++++++... +..++.++.|...+. ....+.+..-+.. +....++|+||
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~sk~vGese~~vr~lF~~-------Ar~~aP~IIFi 247 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQKYIGEGSRMVRELFVM-------AREHAPSIIFM 247 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSCSSTTHHHHHHHHHHHH-------HHHTCSEEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhccccchHHHHHHHHHHH-------HHHhCCceEee
Confidence 4446899999999999999999999986 456777777664432 1112222222221 11234789999
Q ss_pred cCCCCCCcccCC-----CCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-
Q psy17974 481 DDVNMPKLETYG-----AQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG- 548 (583)
Q Consensus 481 DDln~p~~d~yg-----~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~- 548 (583)
||++.-...... ... ..++|.++ | |+-. -.++.+|||+|.|. .|+++++| ||.
T Consensus 248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-D--g~~~--------~~~V~vIaATNrpd----~LDpAllRpGRfD~ 312 (405)
T 4b4t_J 248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL-D--GFET--------SKNIKIIMATNRLD----ILDPALLRPGRIDR 312 (405)
T ss_dssp ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH-H--TTTC--------CCCEEEEEEESCSS----SSCHHHHSTTSSCC
T ss_pred ecchhhccCCCCCCCCCcHHHHHHHHHHHHhh-h--ccCC--------CCCeEEEeccCChh----hCCHhHcCCCcCce
Confidence 999975443211 111 23344333 2 2211 24788999999987 89999999 885
Q ss_pred EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.|+++.|+.++...|+..+++.+
T Consensus 313 ~I~i~lPd~~~R~~Il~~~~~~~ 335 (405)
T 4b4t_J 313 KIEFPPPSVAARAEILRIHSRKM 335 (405)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTS
T ss_pred EEEcCCcCHHHHHHHHHHHhcCC
Confidence 89999999999999999888754
No 4
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.37 E-value=2.3e-12 Score=133.53 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=109.2
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc--cCCCCCeEEE
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL--GAPLGKRLAV 478 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~--~p~~gk~~vl 478 (583)
..+..+.|+||+||||||||++++.+.+.+. .....+++++.+++.++.. ........+.+ .+..-...|+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~la~~~~----~~~~~i~~~~~~~~~~l~g---~~~~~~~~~~~~~~~g~l~~~vl 113 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNTLAKTMD----LDFHRIQFTPDLLPSDLIG---TMIYNQHKGNFEVKKGPVFSNFI 113 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHHHHHHTT----CCEEEEECCTTCCHHHHHE---EEEEETTTTEEEEEECTTCSSEE
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHHHHHHhC----CCeEEEecCCCCChhhcCC---ceeecCCCCceEeccCcccccEE
Confidence 3445588999999999999999999998762 3466788887777665432 11111111211 1111113589
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceE-EEeCCCC
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGL-LSLPSPT 556 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~v-i~i~~p~ 556 (583)
||||+|....+ ..+.|.+.++.+.+.. .......-.++.++||+||.. .|+..+++++++||.+ +.+++|+
T Consensus 114 ~iDEi~~~~~~------~~~~Ll~~l~~~~~~~-~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~ 186 (331)
T 2r44_A 114 LADEVNRSPAK------VQSALLECMQEKQVTI-GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLD 186 (331)
T ss_dssp EEETGGGSCHH------HHHHHHHHHHHSEEEE-TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCC
T ss_pred EEEccccCCHH------HHHHHHHHHhcCceee-CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCC
Confidence 99999986543 4677788888775543 222233345688999999875 4777899999999985 9999999
Q ss_pred HHHHHHHHHHHhcc
Q psy17974 557 EDTLKVIFKVRTSP 570 (583)
Q Consensus 557 ~~sl~~I~~~~l~~ 570 (583)
.++...|.......
T Consensus 187 ~~~~~~il~~~~~~ 200 (331)
T 2r44_A 187 KESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccc
Confidence 99999999887754
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.2e-11 Score=131.61 Aligned_cols=144 Identities=22% Similarity=0.281 Sum_probs=95.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..+.|||+||||||||+++++++.+. +..++.++.|...+. ....+.+..-+.. +....++|+||||
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~l~sk~vGesek~ir~lF~~-------Ar~~aP~IIfiDE 283 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSELIQKYLGDGPRLCRQIFKV-------AGENAPSIVFIDE 283 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGGGCCSSSSHHHHHHHHHHHH-------HHHTCSEEEEEEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHHhhhccCchHHHHHHHHHHH-------HHhcCCcEEEEeh
Confidence 45789999999999999999999986 455666766554331 1111222222221 1123478999999
Q ss_pred CCCCCcccCC-----CCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeC
Q psy17974 483 VNMPKLETYG-----AQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLP 553 (583)
Q Consensus 483 ln~p~~d~yg-----~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~ 553 (583)
++.......+ .......+-++++. .|+ + .-.++.+|||+|.|. .|+++|+| ||. .|+++
T Consensus 284 iDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-~-------~~~~ViVIaATNrpd----~LDpALlRpGRfD~~I~v~ 351 (437)
T 4b4t_I 284 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF-D-------DRGDVKVIMATNKIE----TLDPALIRPGRIDRKILFE 351 (437)
T ss_dssp ESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-C-------CSSSEEEEEEESCST----TCCTTSSCTTTEEEEECCC
T ss_pred hhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc-C-------CCCCEEEEEeCCChh----hcCHHHhcCCceeEEEEcC
Confidence 9976544321 21122222233321 121 1 124788999999987 89999999 885 79999
Q ss_pred CCCHHHHHHHHHHHhccc
Q psy17974 554 SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~ 571 (583)
.|+.++...|+..++..+
T Consensus 352 lPd~~~R~~Il~~~l~~~ 369 (437)
T 4b4t_I 352 NPDLSTKKKILGIHTSKM 369 (437)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHHHHhcCC
Confidence 999999999999888754
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.2e-11 Score=130.74 Aligned_cols=142 Identities=23% Similarity=0.356 Sum_probs=96.0
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
...+.|||+||||||||+++++++..+ +..++.++.|...+. ....+.+..-+.. +....++|+|||
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~l~sk~~Gese~~ir~~F~~-------A~~~~P~IifiD 281 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASGIVDKYIGESARIIREMFAY-------AKEHEPCIIFMD 281 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGTCCSSSSHHHHHHHHHHHH-------HHHSCSEEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhhhccccchHHHHHHHHHHHH-------HHhcCCceeeee
Confidence 345899999999999999999999987 456777777664431 1111222222221 112357999999
Q ss_pred CCCCCCcccC--CC---CC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc--ce-E
Q psy17974 482 DVNMPKLETY--GA---QP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH--FG-L 549 (583)
Q Consensus 482 Dln~p~~d~y--g~---q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~--f~-v 549 (583)
|++....... |. .. ..++|.++ | |+-. ..++.+|||+|.|. .|+++|+|. |. .
T Consensus 282 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-D--g~~~--------~~~vivI~ATNrp~----~LDpAllRpGRfD~~ 346 (437)
T 4b4t_L 282 EVDAIGGRRFSEGTSADREIQRTLMELLTQM-D--GFDN--------LGQTKIIMATNRPD----TLDPALLRPGRLDRK 346 (437)
T ss_dssp CCCSSSCCCSSSCCSSTTHHHHHHHHHHHHH-H--SSSC--------TTSSEEEEEESSTT----SSCTTTTSTTSEEEE
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHh-h--cccC--------CCCeEEEEecCCch----hhCHHHhCCCcccee
Confidence 9997654332 11 11 22344333 2 2221 24688999999987 799999996 74 7
Q ss_pred EEeCCCCHHHHHHHHHHHhccc
Q psy17974 550 LSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l~~~ 571 (583)
|+++.|+.++...|+..++...
T Consensus 347 I~i~lPd~~~R~~Il~~~~~~~ 368 (437)
T 4b4t_L 347 VEIPLPNEAGRLEIFKIHTAKV 368 (437)
T ss_dssp ECCCCCCHHHHHHHHHHHHHTS
T ss_pred eecCCcCHHHHHHHHHHHhcCC
Confidence 9999999999999999888754
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.6e-11 Score=131.73 Aligned_cols=146 Identities=16% Similarity=0.263 Sum_probs=94.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
...+.|||+||||||||+++++++..+ +..++.++.|...+. ....+.+..-+.. +....++|+|||
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~~~~vGese~~ir~lF~~-------A~~~aP~IifiD 281 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAAPQLVQMYIGEGAKLVRDAFAL-------AKEKAPTIIFID 281 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCSSCSSHHHHHHHHHHHH-------HHHHCSEEEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEehhhhhhcccchHHHHHHHHHHH-------HHhcCCeEEeec
Confidence 345789999999999999999999987 456666766654321 1111122111111 111247899999
Q ss_pred CCCCCCccc-----CCCCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEe
Q psy17974 482 DVNMPKLET-----YGAQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSL 552 (583)
Q Consensus 482 Dln~p~~d~-----yg~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i 552 (583)
|++.-.... .|.......+.+++.. .|+-. -.++.+|||+|.|. .|+++++| ||. .|++
T Consensus 282 EiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--------~~~ViVIaaTNrp~----~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 282 ELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--------DDRVKVLAATNRVD----VLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp CTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--------SCSSEEEEECSSCC----CCCTTTCSTTSEEEEEEC
T ss_pred chhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--------CCCEEEEEeCCCch----hcCHhHhcCCceeEEEEe
Confidence 998643322 1211222222333321 23221 23688999999987 79999999 885 7999
Q ss_pred CCCCHHHHHHHHHHHhcccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~l 572 (583)
+.|+.++...|+..+++..-
T Consensus 350 ~lPd~~~R~~Il~~~~~~~~ 369 (434)
T 4b4t_M 350 PLPSEDSRAQILQIHSRKMT 369 (434)
T ss_dssp CCCCHHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHhcCCC
Confidence 99999999999998887553
No 8
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=5.4e-11 Score=114.03 Aligned_cols=171 Identities=12% Similarity=0.146 Sum_probs=111.3
Q ss_pred ceeeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhccc-CCceEE
Q psy17974 363 QLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLAS-NTWAAL 439 (583)
Q Consensus 363 ~w~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~ 439 (583)
.|.+|.+..++.. +.+ ++...+.. .-+..++..+ .+++|+||+|||||++++.+++.+... .....+
T Consensus 3 ~~~~~~~~~~p~~------~~~-~~g~~~~~---~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~ 72 (226)
T 2chg_A 3 NFEIWVEKYRPRT------LDE-VVGQDEVI---QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (226)
T ss_dssp -CCCHHHHTSCSS------GGG-CCSCHHHH---HHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEE
T ss_pred chhhHHHhcCCCC------HHH-HcCcHHHH---HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceE
Confidence 4778877654321 222 33222222 2234444444 369999999999999999998865211 123456
Q ss_pred EEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEe
Q psy17974 440 TINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKT 519 (583)
Q Consensus 440 ~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~ 519 (583)
.++.+.......+...+...... .....+++.+++|||++....+ ..+.|+++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vliiDe~~~l~~~------~~~~l~~~l~~~~----------- 130 (226)
T 2chg_A 73 EMNASDERGIDVVRHKIKEFART-----APIGGAPFKIIFLDEADALTAD------AQAALRRTMEMYS----------- 130 (226)
T ss_dssp EEETTCTTCHHHHHHHHHHHHTS-----CCSTTCSCEEEEEETGGGSCHH------HHHHHHHHHHHTT-----------
T ss_pred EeccccccChHHHHHHHHHHhcc-----cCCCccCceEEEEeChhhcCHH------HHHHHHHHHHhcC-----------
Confidence 67766666655555444332221 0122356789999999876543 4667777777531
Q ss_pred ecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 520 LQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 520 i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.++.+|++++.+. .+.+++.++|.++.+++|+.+++..++...+..
T Consensus 131 -~~~~~i~~~~~~~----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 176 (226)
T 2chg_A 131 -KSCRFILSCNYVS----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK 176 (226)
T ss_dssp -TTEEEEEEESCGG----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEeCChh----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH
Confidence 3567888888764 688999999999999999999999999887653
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.8e-11 Score=131.21 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=94.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..+.+||+||||||||++++++++.+ +..++.++.+...+. ....+.+..-+..- ....++|+|+||
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A-------~~~aP~IifiDE 273 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA-------RENAPSIIFIDE 273 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHH-------HHTCSEEEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhccccchhHHHHHHHHHHH-------HHcCCCeeechh
Confidence 35679999999999999999999987 456777777664331 11122222222211 123478999999
Q ss_pred CCCCCccc-----CCCCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EE
Q psy17974 483 VNMPKLET-----YGAQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LL 550 (583)
Q Consensus 483 ln~p~~d~-----yg~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi 550 (583)
++.-.... .+... ..++|.++- |+.. -.++.+|||+|.|. .|+++++| ||. .|
T Consensus 274 iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld---g~~~--------~~~v~vI~aTN~~~----~LD~AllRpGRfd~~I 338 (428)
T 4b4t_K 274 VDSIATKRFDAQTGSDREVQRILIELLTQMD---GFDQ--------STNVKVIMATNRAD----TLDPALLRPGRLDRKI 338 (428)
T ss_dssp THHHHCSCSSSCSCCCCHHHHHHHHHHHHHH---HSCS--------SCSEEEEEEESCSS----SCCHHHHSSSSEEEEE
T ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHhh---CCCC--------CCCEEEEEecCChh----hcChhhhcCCcceEEE
Confidence 98643322 11111 344554432 2221 24688999999987 79999999 785 68
Q ss_pred EeC-CCCHHHHHHHHHHHhccc
Q psy17974 551 SLP-SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~-~p~~~sl~~I~~~~l~~~ 571 (583)
.+| .|+.+....|+..+++.+
T Consensus 339 ~~p~lPd~~~R~~Il~~~~~~~ 360 (428)
T 4b4t_K 339 EFPSLRDRRERRLIFGTIASKM 360 (428)
T ss_dssp ECCSSCCHHHHHHHHHHHHHSS
T ss_pred EcCCCCCHHHHHHHHHHHhcCC
Confidence 996 799999999999988754
No 10
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5.6e-11 Score=127.56 Aligned_cols=143 Identities=20% Similarity=0.325 Sum_probs=96.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
+...+.|||+||||||||++++++++++ +..++.++.+...+. ....+.+..-+.. +....++|+||
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~s~L~sk~vGesek~ir~lF~~-------Ar~~aP~IIfi 308 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIGSELVQKYVGEGARMVRELFEM-------ARTKKACIIFF 308 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCCCSSSHHHHHHHHHHHH-------HHHTCSEEEEE
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEhHHhhcccCCHHHHHHHHHHHH-------HHhcCCceEee
Confidence 3456899999999999999999999987 455667776654331 1111222211211 11234789999
Q ss_pred cCCCCCCcccC--CCC---C----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-
Q psy17974 481 DDVNMPKLETY--GAQ---P----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG- 548 (583)
Q Consensus 481 DDln~p~~d~y--g~q---~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~- 548 (583)
||++....... ++. . ..++|.++ | |+-. -.++.+|||+|.|. .|+++++| ||.
T Consensus 309 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l-D--g~~~--------~~~ViVIaATNrpd----~LDpALlRpGRFD~ 373 (467)
T 4b4t_H 309 DEIDAVGGARFDDGAGGDNEVQRTMLELITQL-D--GFDP--------RGNIKVMFATNRPN----TLDPALLRPGRIDR 373 (467)
T ss_dssp ECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHH-H--SSCC--------TTTEEEEEECSCTT----SBCHHHHSTTTCCE
T ss_pred cccccccccccCcCCCccHHHHHHHHHHHHHh-h--ccCC--------CCcEEEEeCCCCcc----cCChhhhccccccE
Confidence 99997654332 111 1 22334333 2 2211 24688999999987 89999999 885
Q ss_pred EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.|+++.|+.++...|+..+++..
T Consensus 374 ~I~i~lPd~~~R~~Ilk~~l~~~ 396 (467)
T 4b4t_H 374 KVEFSLPDLEGRANIFRIHSKSM 396 (467)
T ss_dssp EECCCCCCHHHHHHHHHHHHTTS
T ss_pred EEEeCCcCHHHHHHHHHHHhcCC
Confidence 89999999999999999888754
No 11
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.24 E-value=1.2e-10 Score=120.70 Aligned_cols=150 Identities=19% Similarity=0.177 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC
Q psy17974 394 RFGSIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA 470 (583)
Q Consensus 394 r~~~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p 470 (583)
+....+......+ .+|||+||||||||++++.+.+.+ +..++.++++.......+...+..
T Consensus 40 ~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------ 103 (338)
T 3pfi_A 40 NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----SANIKTTAAPMIEKSGDLAAILTN------------ 103 (338)
T ss_dssp HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----TCCEEEEEGGGCCSHHHHHHHHHT------------
T ss_pred HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----CCCeEEecchhccchhHHHHHHHh------------
Confidence 3444444443223 699999999999999999998876 335677888776666555544322
Q ss_pred CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecC------CCeeEeecCeEEEEecCCCCCCCCCCChhhh
Q psy17974 471 PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRD------KMFWKTLQDVVLCTACAPPGGGRMPLTPRFV 544 (583)
Q Consensus 471 ~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~------~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rll 544 (583)
.++..++||||++....+ ..+.|++.++.+...-.. ...-....++.+|+|+|.++ .+++.+.
T Consensus 104 -~~~~~vl~lDEi~~l~~~------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~----~l~~~L~ 172 (338)
T 3pfi_A 104 -LSEGDILFIDEIHRLSPA------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG----MLSNPLR 172 (338)
T ss_dssp -CCTTCEEEEETGGGCCHH------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG----GSCHHHH
T ss_pred -ccCCCEEEEechhhcCHH------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc----ccCHHHH
Confidence 123568999999965433 466777778766532110 00011123689999999865 5889999
Q ss_pred ccc-eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 545 RHF-GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 545 r~f-~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
+|| .++.++.|+.+++..|+......
T Consensus 173 ~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 173 DRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 999 79999999999999999887653
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.3e-10 Score=120.45 Aligned_cols=145 Identities=16% Similarity=0.236 Sum_probs=93.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+++||+||||||||++++++++.+. ...++.++.+...+. ....+.+..-++.. ...+++|+||||+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a-------~~~~~~vl~iDEi 114 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSKWLGESEKLVKNLFQLA-------RENKPSIIFIDEI 114 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCCSSCCSCHHHHHHHHHHH-------HHTSSEEEEEETT
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH-------HhcCCcEEEeecH
Confidence 46899999999999999999998762 335566666543221 00111111111110 1235679999999
Q ss_pred CCCCcccCCCC-C-hHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCCHHH
Q psy17974 484 NMPKLETYGAQ-P-PIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPTEDT 559 (583)
Q Consensus 484 n~p~~d~yg~q-~-~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~~~s 559 (583)
+.......+.+ . ....+.+++.. .|.-. ...++.+|||+|.|. .++++++||| ..++++.|+.++
T Consensus 115 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-------~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 115 DSLCGSRSENESEAARRIKTEFLVQMQGVGV-------DNDGILVLGATNIPW----VLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-------CCTTEEEEEEESCTT----TSCHHHHHTCCEEEECCCCCHHH
T ss_pred HHhccccccccchHHHHHHHHHHHHHhcccc-------cCCCEEEEEecCCcc----cCCHHHHhhcCeEEEeCCcCHHH
Confidence 97644332222 1 22333333321 11110 124789999999985 7999999999 689999999999
Q ss_pred HHHHHHHHhccc
Q psy17974 560 LKVIFKVRTSPG 571 (583)
Q Consensus 560 l~~I~~~~l~~~ 571 (583)
...|+..++...
T Consensus 184 r~~il~~~l~~~ 195 (322)
T 1xwi_A 184 RAAMFKLHLGTT 195 (322)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC
Confidence 999999987644
No 13
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.22 E-value=9e-11 Score=117.59 Aligned_cols=170 Identities=14% Similarity=0.152 Sum_probs=107.0
Q ss_pred CchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 389 TIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 389 T~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
.....+....+..+...+.||||+||||||||++++.+.+... .....++.++++..+ ... +++.+-...++.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~-~~~~~~~~v~~~~~~-~~~----~~~~l~g~~~~~~ 85 (265)
T 2bjv_A 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS-RWQGPFISLNCAALN-ENL----LDSELFGHEAGAF 85 (265)
T ss_dssp CHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST-TTTSCEEEEEGGGSC-HHH----HHHHHHCCC----
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC-ccCCCeEEEecCCCC-hhH----HHHHhcCCccccc
Confidence 3334445556667777889999999999999999999988763 334567888888753 222 2232221111111
Q ss_pred cC-C--------CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CC
Q psy17974 469 GA-P--------LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GR 536 (583)
Q Consensus 469 ~p-~--------~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr 536 (583)
.. . .....++||||++....+ ..+.|.++++.+.+... ......-.++.+|+|+|++-. ..
T Consensus 86 ~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~------~q~~Ll~~l~~~~~~~~-g~~~~~~~~~~iI~atn~~~~~~~~~ 158 (265)
T 2bjv_A 86 TGAQKRHPGRFERADGGTLFLDELATAPMM------VQEKLLRVIEYGELERV-GGSQPLQVNVRLVCATNADLPAMVNE 158 (265)
T ss_dssp -----CCCCHHHHTTTSEEEEESGGGSCHH------HHHHHHHHHHHCEECCC-CC--CEECCCEEEEEESSCHHHHHHH
T ss_pred ccccccccchhhhcCCcEEEEechHhcCHH------HHHHHHHHHHhCCeecC-CCcccccCCeEEEEecCcCHHHHHHc
Confidence 10 0 012358999999976554 45677888988866432 222333467899999998521 12
Q ss_pred CCCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 537 MPLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 537 ~~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
..+.++|.+||.+ +.+|+..+ +++..+...++...
T Consensus 159 ~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~ 197 (265)
T 2bjv_A 159 GTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQM 197 (265)
T ss_dssp TSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHH
Confidence 2467999999964 56666554 67777776666543
No 14
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.18 E-value=9.1e-12 Score=116.63 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=90.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCC----hHHHHHHHHhhhhhhcCccccCCCCCe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTS----SARTQEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt----~~~lq~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
+.+++|+||+|||||++++.+++.+... ....++.++++.... .......+...+..-. ..+++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 116 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA------KQEGN 116 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH------HSTTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh------hcCCC
Confidence 4789999999999999999998876211 234566666654321 1222222222222110 12346
Q ss_pred EEEEecCCCCCCcc--cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceEEEe
Q psy17974 476 LAVFVDDVNMPKLE--TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGLLSL 552 (583)
Q Consensus 476 ~vlfiDDln~p~~d--~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi~i 552 (583)
.|++|||++..... ..+.+...++|+.+++.+ ++.+|++++++. .....+++++.++|..+.+
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~ 182 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG--------------ELHCVGATTLDEYRQYIEKDAALERRFQKVFV 182 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHTT--------------SCCEEEEECHHHHHHHTTTCHHHHTTEEEEEC
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--------------CeEEEEeCCHHHHHHHHhcCHHHHHHhceeec
Confidence 78999999874322 233556788898888743 456788887653 2233578999999999999
Q ss_pred CCCCHHHHHHHH
Q psy17974 553 PSPTEDTLKVIF 564 (583)
Q Consensus 553 ~~p~~~sl~~I~ 564 (583)
+.|+.++...|+
T Consensus 183 ~~p~~~~~~~il 194 (195)
T 1jbk_A 183 AEPSVEDTIAIL 194 (195)
T ss_dssp CCCCHHHHHTTC
T ss_pred CCCCHHHHHHHh
Confidence 999999887653
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.18 E-value=1.9e-10 Score=120.71 Aligned_cols=141 Identities=19% Similarity=0.280 Sum_probs=88.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+++||+||||||||++++++++.+ +..++.++++.... .....+.+..-+.. ...++++||||||+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~-------a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSKWMGESEKLVKQLFAM-------ARENKPSIIFIDQV 152 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEHHHHHSCC---CHHHHHHHHHH-------HHHTSSEEEEEECG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeHHHHhhhhcchHHHHHHHHHHH-------HHHcCCeEEEEech
Confidence 4689999999999999999999987 34556666543111 00001111111111 11235689999999
Q ss_pred CCCCcccCCCCC------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCC
Q psy17974 484 NMPKLETYGAQP------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPT 556 (583)
Q Consensus 484 n~p~~d~yg~q~------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~ 556 (583)
+.......+.+. ..++|.++ +.-. ....++.+|||+|.|. .+++.++||| ..++++.|+
T Consensus 153 d~l~~~r~~~~~~~~~~~~~~ll~~l-~~~~---------~~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~ 218 (355)
T 2qp9_X 153 DALTGTRGEGESEASRRIKTELLVQM-NGVG---------NDSQGVLVLGATNIPW----QLDSAIRRRFERRIYIPLPD 218 (355)
T ss_dssp GGGTC------CTHHHHHHHHHHHHH-HHCC------------CCEEEEEEESCGG----GSCHHHHHTCCEEEECCCCC
T ss_pred HhhcccCCCCcchHHHHHHHHHHHHh-hccc---------ccCCCeEEEeecCCcc----cCCHHHHcccCEEEEeCCcC
Confidence 975443222221 12333332 2110 0124689999999886 7899999999 689999999
Q ss_pred HHHHHHHHHHHhccc
Q psy17974 557 EDTLKVIFKVRTSPG 571 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~ 571 (583)
.++...|+..++...
T Consensus 219 ~~~r~~il~~~l~~~ 233 (355)
T 2qp9_X 219 LAARTTMFEINVGDT 233 (355)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999888654
No 16
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.17 E-value=3e-10 Score=143.98 Aligned_cols=159 Identities=15% Similarity=0.090 Sum_probs=125.0
Q ss_pred cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~ 463 (583)
.-+|-|+-|.|...-+-..+..+.|+++.||+|||||.+++++++.+ +..++.+||+..+++.++.+++.+-+..
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l----g~~~v~~nc~e~ld~~~lg~~~~g~~~~- 697 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL----GRVVVVFNCDDSFDYQVLSRLLVGITQI- 697 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT----TCCCEEEETTSSCCHHHHHHHHHHHHHH-
T ss_pred CcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh----CCcEEEEECCCCCChhHhhHHHHHHHhc-
Confidence 35899999999988888899999999999999999999999999987 3457789999999998887665443321
Q ss_pred cCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHH-------H-HHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 464 TKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLR-------Q-FLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 464 ~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLR-------q-~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
| .++++||+|....+ +++.|- . +.+...-+...+....-..++.+++||||..+|
T Consensus 698 ---------G--aw~~~DE~nr~~~e------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 698 ---------G--AWGCFDEFNRLDEK------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp ---------T--CEEEEETTTSSCHH------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred ---------C--CEeeehhhhhcChH------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 2 35678999998775 455442 2 223333333333344445678999999998789
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHH
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIF 564 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~ 564 (583)
|.++|+.+.++|+.++++.|+.+.+..|.
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHH
Confidence 99999999999999999999999888874
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.17 E-value=1.5e-10 Score=119.82 Aligned_cols=141 Identities=18% Similarity=0.264 Sum_probs=90.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+++||+||||||||++++++++.+ +..++.++++...+ .....+.+..-+..- ...++.|+||||+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a-------~~~~~~vl~iDEi 119 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSKWMGESEKLVKQLFAMA-------RENKPSIIFIDQV 119 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHH-------HHTSSEEEEEECG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHHHhhcccchHHHHHHHHHHHH-------HhcCCeEEEechh
Confidence 3579999999999999999999876 34566666654211 111122222111111 1234679999999
Q ss_pred CCCCcccCC--CCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCC
Q psy17974 484 NMPKLETYG--AQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPT 556 (583)
Q Consensus 484 n~p~~d~yg--~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~ 556 (583)
+.......+ ... ..++++++-. .-. .-.++.+|||+|.|. .+++++.|+| ..++++.|+
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~-------~~~~v~vi~atn~~~----~ld~al~~Rf~~~i~~~~p~ 185 (322)
T 3eie_A 120 DALTGTRGEGESEASRRIKTELLVQMNG---VGN-------DSQGVLVLGATNIPW----QLDSAIRRRFERRIYIPLPD 185 (322)
T ss_dssp GGGSCC------CCTHHHHHHHHHHHGG---GGT-------SCCCEEEEEEESCGG----GSCHHHHHHCCEEEECCCCC
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcc---ccc-------cCCceEEEEecCChh----hCCHHHHcccCeEEEeCCCC
Confidence 965432211 111 1234433321 110 123688999999886 6999999999 579999999
Q ss_pred HHHHHHHHHHHhccc
Q psy17974 557 EDTLKVIFKVRTSPG 571 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~ 571 (583)
.++...|+..++...
T Consensus 186 ~~~r~~il~~~~~~~ 200 (322)
T 3eie_A 186 LAARTTMFEINVGDT 200 (322)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987654
No 18
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.16 E-value=1.2e-10 Score=119.37 Aligned_cols=143 Identities=22% Similarity=0.359 Sum_probs=90.8
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDD 482 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDD 482 (583)
..++++||+||||||||+++++++..+ ....+.++++. +.....+..++..+..|. +....++|+|+||
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~~~~------l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDE 116 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPE------LLTMWFGESEANVREIFDKARQAAPCVLFFDE 116 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEECHHH------HHHHHHTTCTTHHHHHHHHHHHTCSEEEEECS
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEEhHH------HHhhhcCchHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456789999999999999999999876 23445554332 111111111111111221 1123468999999
Q ss_pred CCCCCcccCC-------C-CC-hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EE
Q psy17974 483 VNMPKLETYG-------A-QP-PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LL 550 (583)
Q Consensus 483 ln~p~~d~yg-------~-q~-~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi 550 (583)
++....+..+ . .. ..++|+.+ + |... -.++.+|||+|.|. .++++++| +|. ++
T Consensus 117 id~l~~~~~~~~~~~~~~~~~~~~~lL~~l-~--~~~~--------~~~v~vi~atn~~~----~ld~al~r~gRf~~~i 181 (301)
T 3cf0_A 117 LDSIAKARGGNIGDGGGAADRVINQILTEM-D--GMST--------KKNVFIIGATNRPD----IIDPAILRPGRLDQLI 181 (301)
T ss_dssp TTHHHHHHTTTTCCSSCSCCHHHHHHHHHH-H--SSCT--------TSSEEEEEEESCGG----GSCGGGGSTTSSCEEE
T ss_pred hHHHhhccCCCcCCcchHHHHHHHHHHHHh-h--cccC--------CCCEEEEEecCCcc----ccChHHhcCCccceEE
Confidence 9964332211 1 11 34555443 3 1111 14689999999885 68999998 884 89
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+++.|+.++...|+..+++..
T Consensus 182 ~i~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 182 YIPLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp ECCCCCHHHHHHHHHHHHTTS
T ss_pred ecCCcCHHHHHHHHHHHHccC
Confidence 999999999999998887643
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=1.9e-10 Score=116.25 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=94.8
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
..+.++||+||||||||++++.+++.+ +..++.++.+..... ......+...+.... .+++.|+|||
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vl~iD 117 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET----NATFIRVVGSELVKKFIGEGASLVKDIFKLAK-------EKAPSIIFID 117 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT----TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH-------HTCSEEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehHHHHHhccchHHHHHHHHHHHHH-------HcCCeEEEEE
Confidence 456789999999999999999999876 345666666553221 111222222222111 1235799999
Q ss_pred CCCCCCcccCC-----CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeC
Q psy17974 482 DVNMPKLETYG-----AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLP 553 (583)
Q Consensus 482 Dln~p~~d~yg-----~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~ 553 (583)
|++.......+ .....+.+.++++....+.. -.++.+|+|+|++. .++++++| +|. ++.++
T Consensus 118 Eid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-------~~~~~vI~ttn~~~----~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 118 EIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA-------RGDVKIIGATNRPD----ILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp TTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS-------SSSEEEEEECSCGG----GBCHHHHSTTSEEEEEECC
T ss_pred CHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC-------CCCEEEEEeCCCch----hcCHHHcCCCcCCeEEEEC
Confidence 99875332211 22234445555543211111 13688999999885 68999998 885 89999
Q ss_pred CCCHHHHHHHHHHHhccc
Q psy17974 554 SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~ 571 (583)
.|+.++...|+..++...
T Consensus 187 ~p~~~~r~~il~~~~~~~ 204 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKM 204 (285)
T ss_dssp CCCHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999887644
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.15 E-value=5.2e-10 Score=114.86 Aligned_cols=140 Identities=19% Similarity=0.132 Sum_probs=98.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
...+++|+||||||||++++.+.+.+ ......++++.......+.+.+.. ..+++.++||||++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~----~~~~~~~~~~~~~~~~~l~~~l~~------------~~~~~~~l~lDEi~ 100 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL----GVNLRVTSGPAIEKPGDLAAILAN------------SLEEGDILFIDEIH 100 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH----TCCEEEECTTTCCSHHHHHHHHTT------------TCCTTCEEEETTTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeccccCChHHHHHHHHH------------hccCCCEEEEECCc
Confidence 34799999999999999999998876 234566777776665555443322 11234589999998
Q ss_pred CCCcccCCCCChHHHHHHHHHhCCeeecC-----CCeeE-eecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCCH
Q psy17974 485 MPKLETYGAQPPIELLRQFLDFGGLYDRD-----KMFWK-TLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPTE 557 (583)
Q Consensus 485 ~p~~d~yg~q~~lElLRq~ld~~g~yd~~-----~~~~~-~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~~ 557 (583)
....+ ..+.|..+++.+...-.. ...+. ...++.+|+|+|.++ .+.+.+.++| .++.++.|+.
T Consensus 101 ~l~~~------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~----~~~~~l~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 101 RLSRQ------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG----LITAPLLSRFGIVEHLEYYTP 170 (324)
T ss_dssp SCCHH------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS----SCSCSTTTTCSCEEECCCCCH
T ss_pred ccccc------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc----cCCHHHHhcccEEEecCCCCH
Confidence 75533 356677777766543111 11111 234789999999875 5677888889 5999999999
Q ss_pred HHHHHHHHHHhcc
Q psy17974 558 DTLKVIFKVRTSP 570 (583)
Q Consensus 558 ~sl~~I~~~~l~~ 570 (583)
+++..++..++..
T Consensus 171 ~e~~~~l~~~~~~ 183 (324)
T 1hqc_A 171 EELAQGVMRDARL 183 (324)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999988887653
No 21
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.14 E-value=2.8e-10 Score=117.34 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=96.7
Q ss_pred HHHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCC
Q psy17974 398 IMEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 398 ll~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
.+..++..+. .+|+.||||||||++++.+++.+ +..++.++.+... ...+.+.+...... .+..++
T Consensus 37 ~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~~~-~~~i~~~~~~~~~~------~~~~~~ 105 (324)
T 3u61_B 37 TFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSDCK-IDFVRGPLTNFASA------ASFDGR 105 (324)
T ss_dssp HHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTTCC-HHHHHTHHHHHHHB------CCCSSC
T ss_pred HHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccccC-HHHHHHHHHHHHhh------cccCCC
Confidence 3445555543 45777889999999999999876 3456677765432 44444443332221 233456
Q ss_pred eEEEEecCCCCCC-cccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeC
Q psy17974 475 RLAVFVDDVNMPK-LETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 475 ~~vlfiDDln~p~-~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
+.|+||||++... .+ ..+.|+.+++.. -.++.+|+++|++. .+++++.++|.++.++
T Consensus 106 ~~vliiDEi~~l~~~~------~~~~L~~~le~~------------~~~~~iI~~~n~~~----~l~~~l~sR~~~i~~~ 163 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAE------SQRHLRSFMEAY------------SSNCSIIITANNID----GIIKPLQSRCRVITFG 163 (324)
T ss_dssp EEEEEEESCCCGGGHH------HHHHHHHHHHHH------------GGGCEEEEEESSGG----GSCTTHHHHSEEEECC
T ss_pred CeEEEEECCcccCcHH------HHHHHHHHHHhC------------CCCcEEEEEeCCcc----ccCHHHHhhCcEEEeC
Confidence 7899999999865 43 456677777642 14678999999875 6899999999999999
Q ss_pred CCCHHHHHHHHHHHhc
Q psy17974 554 SPTEDTLKVIFKVRTS 569 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~ 569 (583)
.|+.+++..|+..++.
T Consensus 164 ~~~~~e~~~il~~~~~ 179 (324)
T 3u61_B 164 QPTDEDKIEMMKQMIR 179 (324)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999997776665544
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.14 E-value=3.8e-10 Score=122.05 Aligned_cols=148 Identities=18% Similarity=0.234 Sum_probs=92.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDDV 483 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDDl 483 (583)
..+++||+||||||||++++++++.+. ...++.++++...+. .+ +..++..+..+. ....++.||||||+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~~-----~~-g~~~~~~~~~f~~a~~~~~~vl~iDEi 236 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSK-----WL-GESEKLVKNLFQLARENKPSIIFIDEI 236 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC---------------CCCTHHHHHHHHHHSCSEEEEESCT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHhh-----hc-chHHHHHHHHHHHHHHcCCeEEEEech
Confidence 347899999999999999999998762 334555555432211 00 000000011111 01235689999999
Q ss_pred CCCCcccCC--CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEeCCCCHHHH
Q psy17974 484 NMPKLETYG--AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSLPSPTEDTL 560 (583)
Q Consensus 484 n~p~~d~yg--~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i~~p~~~sl 560 (583)
+.......+ ......++.+++..-..... ...++.+|||+|.|. .++++++||| .+++++.|+.+..
T Consensus 237 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~------~~~~v~vI~atn~~~----~ld~al~rRf~~~i~i~~P~~~~r 306 (444)
T 2zan_A 237 DSLCGSRSENESEAARRIKTEFLVQMQGVGV------DNDGILVLGATNIPW----VLDSAIRRRFEKRIYIPLPEAHAR 306 (444)
T ss_dssp TTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC------CCSSCEEEEEESCGG----GSCHHHHTTCCEEEECCCCCHHHH
T ss_pred HhhccCCCCccccHHHHHHHHHHHHHhCccc------CCCCEEEEecCCCcc----ccCHHHHhhcceEEEeCCcCHHHH
Confidence 965433222 22233455555542211110 124789999999985 7999999999 4899999999999
Q ss_pred HHHHHHHhccc
Q psy17974 561 KVIFKVRTSPG 571 (583)
Q Consensus 561 ~~I~~~~l~~~ 571 (583)
..|+..++...
T Consensus 307 ~~il~~~l~~~ 317 (444)
T 2zan_A 307 AAMFRLHLGST 317 (444)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999987643
No 23
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.14 E-value=5.7e-11 Score=121.47 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=86.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVN 484 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln 484 (583)
..+||+||||||||++++++++.+ +..++.++++...+. ....+.+...+..-. .. ...++++|+||||++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~-~~--~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-EI--IRKGNMCCLFINDLD 109 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHH-HH--HTTSSCCCEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHH-HH--HhcCCCeEEEEechh
Confidence 468999999999999999999987 345666766542211 111111211121110 00 013456799999998
Q ss_pred CCCcccCCCC-------ChHHHHHHHHHhCCeeecCCC-eeEeecCeEEEEecCCCCCCCCCCChhhhc--cceE-EEeC
Q psy17974 485 MPKLETYGAQ-------PPIELLRQFLDFGGLYDRDKM-FWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFGL-LSLP 553 (583)
Q Consensus 485 ~p~~d~yg~q-------~~lElLRq~ld~~g~yd~~~~-~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~v-i~i~ 553 (583)
......-|.. .+...|-+++|.......... ......++.+|+|+|.+. .++++++| +|.. +.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~----~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS----TLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC----C--CHHHHHHHEEEEEE--
T ss_pred hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc----cCCHHHhCCCCCceeEe--
Confidence 7554322222 245677788875443322111 112345799999999876 79999997 6653 54
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy17974 554 SPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~ 570 (583)
.|+.++...|+..++..
T Consensus 184 ~P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 184 APTREDRIGVCTGIFRT 200 (293)
T ss_dssp CCCHHHHHHHHHHHHGG
T ss_pred CcCHHHHHHHHHHhccC
Confidence 47999999999987753
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.13 E-value=7.6e-10 Score=110.02 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=85.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
....++||+||||||||++++.+++.+ ....+.++++...+. ......+..-++... ...+.|+|||
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-------~~~~~vl~iD 105 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR-------ARAPCIVYID 105 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH-------HTCSEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHHHHhhccChhHHHHHHHHHHHH-------hcCCeEEEEe
Confidence 345689999999999999999999876 234566666543221 111111111122111 1235799999
Q ss_pred CCCCCCcccCC------CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEe
Q psy17974 482 DVNMPKLETYG------AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSL 552 (583)
Q Consensus 482 Dln~p~~d~yg------~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i 552 (583)
|++.......+ .....+.+.++++. .+... .-.++.+|+|+|.+. .+++++.| +| ..+++
T Consensus 106 eid~l~~~~~~~~~~~~~~~~~~~l~~ll~~---~~~~~----~~~~~~vi~~tn~~~----~ld~~l~~~~R~~~~i~i 174 (262)
T 2qz4_A 106 EIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE---MDGMG----TTDHVIVLASTNRAD----ILDGALMRPGRLDRHVFI 174 (262)
T ss_dssp CC-------------------CHHHHHHHHH---HHTCC----TTCCEEEEEEESCGG----GGGSGGGSTTSCCEEEEC
T ss_pred CcchhhccccccccCccchhHHHHHHHHHHH---hhCcC----CCCCEEEEecCCChh----hcCHHHhcCCcCCeEEEe
Confidence 99975332211 11111223333321 01000 013688999999875 67889998 88 58999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~ 571 (583)
+.|+.++...|+..++...
T Consensus 175 ~~p~~~~r~~il~~~~~~~ 193 (262)
T 2qz4_A 175 DLPTLQERREIFEQHLKSL 193 (262)
T ss_dssp CSCCHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
No 25
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.12 E-value=7.4e-10 Score=112.65 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=98.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--------HHHHHHHHhhhhhhcCccccCCCCCeE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--------ARTQEILEGKLDKRTKTLLGAPLGKRL 476 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--------~~lq~~ie~~l~~~~~~~~~p~~gk~~ 476 (583)
...++||+||||||||++++.+++.+ +...+.++++..+.. ..+.+..+.. .+.+.. .+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~ 118 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA-----GGAIDA-VEQNG 118 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTT-----TTCHHH-HHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEcchhcccCCccCccHHHHHHHHHHHh-----hHHHhh-ccCCC
Confidence 36799999999999999999999877 234667777665431 1122222111 111000 02256
Q ss_pred EEEecCCCCCCcccCCCCC------hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-E
Q psy17974 477 AVFVDDVNMPKLETYGAQP------PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-L 549 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~------~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-v 549 (583)
|+||||++....+..+... ....|.++++.+.++.... .....++.+|+|+++.......+++++.+||. +
T Consensus 119 vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~ 196 (310)
T 1ofh_A 119 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 196 (310)
T ss_dssp EEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEE
T ss_pred EEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc--cccCCcEEEEEcCCcccCCcccCCHHHHhhCCce
Confidence 9999999986655432222 1455667788665554322 33446788999876433333478999999996 5
Q ss_pred EEeCCCCHHHHHHHHHH
Q psy17974 550 LSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~ 566 (583)
+.+++|+.+++..|...
T Consensus 197 i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 197 VELTALSAADFERILTE 213 (310)
T ss_dssp EECCCCCHHHHHHHHHS
T ss_pred EEcCCcCHHHHHHHHHh
Confidence 99999999999999884
No 26
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.11 E-value=4.2e-10 Score=114.92 Aligned_cols=157 Identities=18% Similarity=0.260 Sum_probs=106.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhh---hhhcCccc-cC-CCCCeEEEEec
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKL---DKRTKTLL-GA-PLGKRLAVFVD 481 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l---~~~~~~~~-~p-~~gk~~vlfiD 481 (583)
.+++|+||||||||++++.++..+. .....++.++++..+........+.... ....++.+ +. ......|+|||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lD 126 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFD 126 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEe
Confidence 5899999999999999999988763 3344577888887665443333331100 00000100 00 01123699999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC------C----------------CCCC
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG------G----------------RMPL 539 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~------g----------------r~~l 539 (583)
|++....+ ....|.++++.+.+.+. ......+.++.+|+|+|++.. + ...+
T Consensus 127 Ei~~l~~~------~~~~Ll~~le~~~~~~~-~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (311)
T 4fcw_A 127 AIEKAHPD------VFNILLQMLDDGRLTDS-HGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 199 (311)
T ss_dssp TGGGSCHH------HHHHHHHHHHHSEEECT-TSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHS
T ss_pred ChhhcCHH------HHHHHHHHHhcCEEEcC-CCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhC
Confidence 99876543 56788888998877653 334556678889999998310 0 2257
Q ss_pred Chhhhccc-eEEEeCCCCHHHHHHHHHHHhccc
Q psy17974 540 TPRFVRHF-GLLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 540 ~~Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
++.|.+|| .++.+++|+.+++..|...++...
T Consensus 200 ~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~ 232 (311)
T 4fcw_A 200 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYL 232 (311)
T ss_dssp CHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHH
T ss_pred CHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 88999999 588899999999999999988654
No 27
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.11 E-value=4.8e-10 Score=115.72 Aligned_cols=162 Identities=9% Similarity=0.057 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhc-
Q psy17974 394 RFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRT- 464 (583)
Q Consensus 394 r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~- 464 (583)
+....+...+..+ .+++|+||||||||++++.+++.+... ..+.++.+|+...+++..+-..|-..+....
T Consensus 31 ~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~ 110 (318)
T 3te6_A 31 RIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL 110 (318)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC
Confidence 3445666666654 469999999999999999999887321 1467889999888887665544444442110
Q ss_pred --C-------cccc---CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC
Q psy17974 465 --K-------TLLG---APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP 532 (583)
Q Consensus 465 --~-------~~~~---p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~ 532 (583)
+ ..|. ...++++|+++||++.-. .| ++|..+++ |.... -.++.+||++|..
T Consensus 111 ~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----~q---~~L~~l~~---~~~~~------~s~~~vI~i~n~~ 173 (318)
T 3te6_A 111 CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----SE---KILQYFEK---WISSK------NSKLSIICVGGHN 173 (318)
T ss_dssp -CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----CT---HHHHHHHH---HHHCS------SCCEEEEEECCSS
T ss_pred CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----cc---hHHHHHHh---ccccc------CCcEEEEEEecCc
Confidence 0 0111 124567899999998765 23 44555554 21111 1357888888765
Q ss_pred CCCCCCCChhhhccc--eEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 533 GGGRMPLTPRFVRHF--GLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 533 ~~gr~~l~~Rllr~f--~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
..-...+++|+.++| .+|.+++++.+++..|...-++...
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 421123566677787 5799999999999999999998653
No 28
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.09 E-value=4.6e-11 Score=139.37 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=87.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHH----HHHHHhhhhhhcCccccCCCCCe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSART----QEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~l----q~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
+.+++|+||||||||++++.++..+... .+..++.++++........ ...+..-+..-. ..+++
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~------~~~~~ 264 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV------QSQGE 264 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHH------TTCSS
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHH------hcCCC
Confidence 4589999999999999999998876221 1456777777665422211 111111111111 12356
Q ss_pred EEEEecCCCCCC--cccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeC
Q psy17974 476 LAVFVDDVNMPK--LETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 476 ~vlfiDDln~p~--~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
.|+||||+|... .+..|++.+..+|+++++.+ ++.+|+|++++...+..++++|.|||.++.++
T Consensus 265 ~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--------------~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~ 330 (854)
T 1qvr_A 265 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--------------ELRLIGATTLDEYREIEKDPALERRFQPVYVD 330 (854)
T ss_dssp EEEEECCC-------------------HHHHHTT--------------CCCEEEEECHHHHHHHTTCTTTCSCCCCEEEC
T ss_pred eEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--------------CeEEEEecCchHHhhhccCHHHHhCCceEEeC
Confidence 899999999743 33456677788899998754 35688998876422246789999999999999
Q ss_pred CCCHHHHHHHHHHHhccc
Q psy17974 554 SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~ 571 (583)
+|+.++...|+..++..+
T Consensus 331 ~p~~~e~~~iL~~~~~~~ 348 (854)
T 1qvr_A 331 EPTVEETISILRGLKEKY 348 (854)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhhh
Confidence 999999999998877644
No 29
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.08 E-value=4.3e-11 Score=111.90 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=83.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCC----ChHHHHHHHHhhhhhhcCccccCCCCCe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQT----SSARTQEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~T----t~~~lq~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
+.+++|+||+|||||++++.+++.+... ....+..++++... ........+...+..-. ..+++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 116 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQ------DAEGQ 116 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHH------HTTTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHH------hcCCc
Confidence 5789999999999999999998876321 14455555554321 11111112221111110 01346
Q ss_pred EEEEecCCCCCCcc---cCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceEEE
Q psy17974 476 LAVFVDDVNMPKLE---TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGLLS 551 (583)
Q Consensus 476 ~vlfiDDln~p~~d---~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi~ 551 (583)
.+++|||++..... ..+.+...++|+++++.+ ++.+|++++++. .....+++++.+||..+.
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~ 182 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG--------------ELRCIGATTVSEYRQFIEKDKALERRFQQIL 182 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--------------CSCEEEEECHHHHHHHTTTCHHHHHHEEEEE
T ss_pred eEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--------------CeeEEEecCHHHHHHHHhccHHHHHhcCccc
Confidence 79999999875422 223466788888888642 467889888753 112357999999999999
Q ss_pred eCCCC
Q psy17974 552 LPSPT 556 (583)
Q Consensus 552 i~~p~ 556 (583)
++.|+
T Consensus 183 i~~p~ 187 (187)
T 2p65_A 183 VEQPS 187 (187)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 99986
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.07 E-value=7.5e-10 Score=119.79 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=92.1
Q ss_pred HHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCe
Q psy17974 398 IMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 398 ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
.+...+..++ ++||+||||||||++++.+.+.+. .....++.+. .....+.+.++...... ..+++
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~----~~f~~l~a~~-~~~~~ir~~~~~a~~~~-------~~~~~ 107 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN----ADVERISAVT-SGVKEIREAIERARQNR-------NAGRR 107 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT----CEEEEEETTT-CCHHHHHHHHHHHHHHH-------HTTCC
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC----CCeEEEEecc-CCHHHHHHHHHHHHHhh-------hcCCC
Confidence 3445555554 699999999999999999998762 2344444332 33445555544322211 13457
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCC
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSP 555 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p 555 (583)
.|+||||++.-..+. .+.|...++.+ .+.+|+|++... ...+.+++.+++.++.++.|
T Consensus 108 ~iLfIDEI~~l~~~~------q~~LL~~le~~--------------~v~lI~att~n~--~~~l~~aL~sR~~v~~l~~l 165 (447)
T 3pvs_A 108 TILFVDEVHRFNKSQ------QDAFLPHIEDG--------------TITFIGATTENP--SFELNSALLSRARVYLLKSL 165 (447)
T ss_dssp EEEEEETTTCC------------CCHHHHHTT--------------SCEEEEEESSCG--GGSSCHHHHTTEEEEECCCC
T ss_pred cEEEEeChhhhCHHH------HHHHHHHHhcC--------------ceEEEecCCCCc--ccccCHHHhCceeEEeeCCc
Confidence 799999999865442 22233445532 266777764322 23789999999999999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.+++..|....+...
T Consensus 166 ~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDK 181 (447)
T ss_dssp CHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998753
No 31
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=1.3e-09 Score=120.04 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=94.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh-cCcccc------CCCCCeEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR-TKTLLG------APLGKRLAV 478 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~-~~~~~~------p~~gk~~vl 478 (583)
.+++||+||||||||++++.+++.+ ++.++.++++...+...+...+....... ..+.+. +..+++.|+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 152 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVI 152 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEE
Confidence 3789999999999999999999976 46777888877666544443332221111 112222 234678899
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHH
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTED 558 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~ 558 (583)
||||++....+ .|..++.|.++++.+ +..+|++|+.... ..-+++.|++..+.++.|+.+
T Consensus 153 iIDEid~l~~~---~~~~l~~L~~~l~~~--------------~~~iIli~~~~~~---~~l~~l~~r~~~i~f~~~~~~ 212 (516)
T 1sxj_A 153 IMDEVDGMSGG---DRGGVGQLAQFCRKT--------------STPLILICNERNL---PKMRPFDRVCLDIQFRRPDAN 212 (516)
T ss_dssp EECSGGGCCTT---STTHHHHHHHHHHHC--------------SSCEEEEESCTTS---STTGGGTTTSEEEECCCCCHH
T ss_pred EEECCCccchh---hHHHHHHHHHHHHhc--------------CCCEEEEEcCCCC---ccchhhHhceEEEEeCCCCHH
Confidence 99999865433 345677788888753 2235555554321 223567888899999999999
Q ss_pred HHHHHHHHHhc
Q psy17974 559 TLKVIFKVRTS 569 (583)
Q Consensus 559 sl~~I~~~~l~ 569 (583)
++..++..+..
T Consensus 213 ~~~~~L~~i~~ 223 (516)
T 1sxj_A 213 SIKSRLMTIAI 223 (516)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.05 E-value=2e-10 Score=127.33 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=89.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC---ccccCCCCCeEEEEecC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK---TLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~---~~~~p~~gk~~vlfiDD 482 (583)
+.+++|+||||||||++++.+...+. .....++++.......+............+ ..+........|+|+||
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~----~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDE 183 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG----RKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDE 183 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT----CEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC----CCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhh
Confidence 67899999999999999999988762 245667776643322221110000000000 11111222334899999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCC---eeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHH
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGG---LYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDT 559 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g---~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~s 559 (583)
++....+..|. +.+.|.+.+|.+. +.+.....-....++.+|+|+|++. .+++.|++||.+|.++.|+.++
T Consensus 184 id~l~~~~~~~--~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~----~l~~aL~~R~~vi~~~~~~~~e 257 (543)
T 3m6a_A 184 IDKMSSDFRGD--PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA----TIPGPLRDRMEIINIAGYTEIE 257 (543)
T ss_dssp SSSCC-----------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT----TSCHHHHHHEEEEECCCCCHHH
T ss_pred hhhhhhhhccC--HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc----cCCHHHHhhcceeeeCCCCHHH
Confidence 99766553221 2333445554321 2221111223346899999999976 7999999999999999999999
Q ss_pred HHHHHHHHh
Q psy17974 560 LKVIFKVRT 568 (583)
Q Consensus 560 l~~I~~~~l 568 (583)
...|+..++
T Consensus 258 ~~~Il~~~l 266 (543)
T 3m6a_A 258 KLEIVKDHL 266 (543)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 999998876
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.05 E-value=7.7e-10 Score=107.84 Aligned_cols=142 Identities=12% Similarity=0.085 Sum_probs=88.2
Q ss_pred HHHHHh--cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeE
Q psy17974 399 MEKLLL--VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRL 476 (583)
Q Consensus 399 l~~~l~--~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~ 476 (583)
+..++. .+.+++|+||||||||++++.+++.+. ...+.+..++++..... + ...+. .-+++.
T Consensus 43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~-~~~~~~~~~~~~~~~~~--~----~~~~~---------~~~~~~ 106 (242)
T 3bos_A 43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN-ELERRSFYIPLGIHASI--S----TALLE---------GLEQFD 106 (242)
T ss_dssp HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEGGGGGGS--C----GGGGT---------TGGGSS
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHH--H----HHHHH---------hccCCC
Confidence 444444 478999999999999999999988763 33456667766542210 0 00111 012345
Q ss_pred EEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeC
Q psy17974 477 AVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLP 553 (583)
Q Consensus 477 vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~ 553 (583)
+++|||++....+....+...++++...+.+ .+.+|.+++.+......+.+++.++| .++.++
T Consensus 107 vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~--------------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~ 172 (242)
T 3bos_A 107 LICIDDVDAVAGHPLWEEAIFDLYNRVAEQK--------------RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQ 172 (242)
T ss_dssp EEEEETGGGGTTCHHHHHHHHHHHHHHHHHC--------------SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECC
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcC--------------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeC
Confidence 8999999875433211111233333333322 12355555543322334568999999 899999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy17974 554 SPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~ 570 (583)
.|+.+++..|+...+..
T Consensus 173 ~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAM 189 (242)
T ss_dssp CCCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999888763
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.04 E-value=1.2e-09 Score=125.88 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=105.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh---hhhhhcCcc-ccC-CCCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG---KLDKRTKTL-LGA-PLGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~---~l~~~~~~~-~~p-~~gk~~vlfiDD 482 (583)
++||+||||||||++++.+++.+ +..++.+++|..+....+.+.+.. ......++. .+. ......|+|+||
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDE 565 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDE 565 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHh----cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeC
Confidence 69999999999999999999877 246778898876542111000000 000000000 000 011257999999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC---------------------CCCCCh
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG---------------------RMPLTP 541 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g---------------------r~~l~~ 541 (583)
++...++ +.+.|.|++|.|.+.+.. .......++.+|+|+|++... +..+++
T Consensus 566 i~~~~~~------~~~~Ll~~le~~~~~~~~-g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 638 (758)
T 1r6b_X 566 IEKAHPD------VFNILLQVMDNGTLTDNN-GRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTP 638 (758)
T ss_dssp GGGSCHH------HHHHHHHHHHHSEEEETT-TEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCH
T ss_pred ccccCHH------HHHHHHHHhcCcEEEcCC-CCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCH
Confidence 9976554 788999999998887754 455666899999999985411 015789
Q ss_pred hhhccc-eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 542 RFVRHF-GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 542 Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|++|| .+|.+++++.+++..|...++..
T Consensus 639 ~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~ 668 (758)
T 1r6b_X 639 EFRNRLDNIIWFDHLSTDVIHQVVDKFIVE 668 (758)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHhhCCcceeeCCCCHHHHHHHHHHHHHH
Confidence 999999 68999999999999999988864
No 35
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.04 E-value=6.2e-11 Score=129.12 Aligned_cols=135 Identities=17% Similarity=0.290 Sum_probs=82.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC-CCCCeEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA-PLGKRLA 477 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p-~~gk~~v 477 (583)
.+.|+||+||||||||++++.++..+... .+..++.++++.... +..+.+.+.++.. ...++.|
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~---------g~~e~~~~~~~~~~~~~~~~i 270 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR---------GEFEDRLKKVMDEIRQAGNII 270 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------CTTHHHHHHHHHTCCCCE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcccc---------chHHHHHHHHHHHHHhcCCeE
Confidence 45699999999999999999998876211 133455555541110 0111111111110 1124569
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChhhhccceEEEeCCCC
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFVRHFGLLSLPSPT 556 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~Rllr~f~vi~i~~p~ 556 (583)
+||| |++.....|+..++.| ++.+|||+|++.. +...++++|.|||.+|.+++|+
T Consensus 271 LfiD----------~~~~a~~~L~~~L~~g--------------~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~ 326 (468)
T 3pxg_A 271 LFID----------AAIDASNILKPSLARG--------------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (468)
T ss_dssp EEEC----------C--------CCCTTSS--------------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred EEEe----------CchhHHHHHHHhhcCC--------------CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCC
Confidence 9999 4444445555555432 5789999998752 2236899999999999999999
Q ss_pred HHHHHHHHHHHhcccc
Q psy17974 557 EDTLKVIFKVRTSPGK 572 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~l 572 (583)
.++...|+..++..+.
T Consensus 327 ~e~~~~iL~~~~~~~~ 342 (468)
T 3pxg_A 327 VDESIQILQGLRDRYE 342 (468)
T ss_dssp HHHHHHHHHHTTTTSG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877643
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.03 E-value=5.4e-10 Score=118.59 Aligned_cols=143 Identities=19% Similarity=0.239 Sum_probs=88.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChH--HHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSA--RTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~--~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
...++||+||||||||++++.++..+ +..++.++++...... .....+...++... ..++.||||||
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-------~~~~~il~iDE 215 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSKYVGEGEKLVRALFAVAR-------ELQPSIIFIDQ 215 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC-------CHHHHHHHHHHHH-------HSSSEEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhccccchHHHHHHHHHHHHH-------hcCCeEEEEEC
Confidence 35799999999999999999998875 3456677765533210 11111111111111 12356999999
Q ss_pred CCCCCccc-CCCCC-h----HHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCC
Q psy17974 483 VNMPKLET-YGAQP-P----IELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSP 555 (583)
Q Consensus 483 ln~p~~d~-yg~q~-~----lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p 555 (583)
++....+. .+.+. . .++++.+-. .... .-.++.+|||+|++. .+++.+.|||. +++++.|
T Consensus 216 id~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~~------~~~~v~vI~atn~~~----~l~~~l~~R~~~~i~i~~p 282 (389)
T 3vfd_A 216 VDSLLCERREGEHDASRRLKTEFLIEFDG---VQSA------GDDRVLVMGATNRPQ----ELDEAVLRRFIKRVYVSLP 282 (389)
T ss_dssp GGGGC--------CTHHHHHHHHHHHHHH---HC-----------CEEEEEEESCGG----GCCHHHHTTCCEEEECCCC
T ss_pred chhhcccCCCccchHHHHHHHHHHHHhhc---cccc------CCCCEEEEEecCCch----hcCHHHHcCcceEEEcCCc
Confidence 98653222 11111 1 234444332 1110 124689999999876 78999999995 8999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.++...|+..++..+
T Consensus 283 ~~~~r~~il~~~~~~~ 298 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQ 298 (389)
T ss_dssp CHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999887653
No 37
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.02 E-value=1.5e-09 Score=111.49 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=103.9
Q ss_pred hhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC
Q psy17974 391 DTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA 470 (583)
Q Consensus 391 dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p 470 (583)
...+....+......+.||||+||||||||++++.+..... ..+..++.+|+++... ..+++.+-...++.|..
T Consensus 10 ~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~~~~~-----~l~~~~lfg~~~g~~tg 83 (304)
T 1ojl_A 10 AMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCAALNE-----SLLESELFGHEKGAFTG 83 (304)
T ss_dssp HHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECSSCCH-----HHHHHHHTCCCSSCCC-
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCCCCCh-----HHHHHHhcCccccccCc
Confidence 34445556666677889999999999999999999988652 3345677888876432 23444443333333321
Q ss_pred -C---C-----CCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-----CCC
Q psy17974 471 -P---L-----GKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-----GGR 536 (583)
Q Consensus 471 -~---~-----gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-----~gr 536 (583)
. . ....++||||++....+ ....|.++++.+.+.. .......-.++.+|+|+|++- .|
T Consensus 84 ~~~~~~g~~~~a~~g~L~LDEi~~l~~~------~q~~Ll~~l~~~~~~~-~g~~~~~~~~~riI~atn~~l~~~v~~g- 155 (304)
T 1ojl_A 84 ADKRREGRFVEADGGTLFLDEIGDISPL------MQVRLLRAIQEREVQR-VGSNQTISVDVRLIAATHRDLAEEVSAG- 155 (304)
T ss_dssp --CCCCCHHHHHTTSEEEEESCTTCCHH------HHHHHHHHHHSSBCCB-TTBCCCCBCCCEEEEEESSCHHHHHHHT-
T ss_pred hhhhhcCHHHhcCCCEEEEeccccCCHH------HHHHHHHHHhcCEeee-cCCcccccCCeEEEEecCccHHHHHHhC-
Confidence 1 0 11358999999976543 3344555666654432 222222235799999999862 13
Q ss_pred CCCChhhhccceEEE--eCCCC--HHHHHHHHHHHhccc
Q psy17974 537 MPLTPRFVRHFGLLS--LPSPT--EDTLKVIFKVRTSPG 571 (583)
Q Consensus 537 ~~l~~Rllr~f~vi~--i~~p~--~~sl~~I~~~~l~~~ 571 (583)
.+.++|..+|+++. +|+.. .+++..+...++..+
T Consensus 156 -~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~ 193 (304)
T 1ojl_A 156 -RFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRF 193 (304)
T ss_dssp -SSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHH
T ss_pred -CcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHH
Confidence 35688988987655 55544 567777777776543
No 38
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=2.1e-09 Score=111.46 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=97.8
Q ss_pred HHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhccc--CCceEEEEEeccCCChHHHHHHHHhhhhhhcCcc-----cc
Q psy17974 399 MEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLAS--NTWAALTINFSAQTSSARTQEILEGKLDKRTKTL-----LG 469 (583)
Q Consensus 399 l~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~--~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~-----~~ 469 (583)
+..++..+ .+++|+||||||||++++.+++.+..+ ....+..++.+.......+.+.+........... -+
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLEN 128 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhccc
Confidence 45556666 579999999999999999998875211 1234556666554454444433322111100000 01
Q ss_pred CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE
Q psy17974 470 APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL 549 (583)
Q Consensus 470 p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v 549 (583)
.+.+++.|++|||++....+ ..+.|+.+++... .+..+|.++|.+. .+.+++.+|+.+
T Consensus 129 ~~~~~~~vliiDE~~~l~~~------~~~~Ll~~le~~~------------~~~~~il~~~~~~----~l~~~l~sR~~~ 186 (353)
T 1sxj_D 129 YPCPPYKIIILDEADSMTAD------AQSALRRTMETYS------------GVTRFCLICNYVT----RIIDPLASQCSK 186 (353)
T ss_dssp SCCCSCEEEEETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGG----GSCHHHHHHSEE
T ss_pred CCCCCceEEEEECCCccCHH------HHHHHHHHHHhcC------------CCceEEEEeCchh----hCcchhhccCce
Confidence 22345679999999876543 2455666666431 2456777787765 588999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhc
Q psy17974 550 LSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l~ 569 (583)
+.+++|+.+++..+...++.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999888765
No 39
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.02 E-value=1.2e-09 Score=125.20 Aligned_cols=143 Identities=20% Similarity=0.310 Sum_probs=93.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+.|||+||||||||++++++++++ +..++.++.+...+ .....+.+..-++. +....++|+||||+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el----g~~~~~v~~~~l~sk~~gese~~lr~lF~~-------A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEE-------AEKNAPAIIFIDEL 306 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT----TCEEEEEEHHHHHSSCTTHHHHHHHHHHHH-------HTTSCSEEEEEESG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh----CCeEEEEEhHHhhcccchHHHHHHHHHHHH-------HHHcCCeEEEEehh
Confidence 4689999999999999999999876 34566676544221 11112222222221 22345799999999
Q ss_pred CCCCcccCC--CCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCCCCH
Q psy17974 484 NMPKLETYG--AQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPSPTE 557 (583)
Q Consensus 484 n~p~~d~yg--~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~p~~ 557 (583)
+.-.+..-+ .+.--..+.|++.. .|+- .-.++.+|||+|.|. .|++.++| +|. .|.++.|+.
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~--------~~~~V~VIaaTN~~d----~LD~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK--------QRAHVIVMAATNRPN----SIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCC--------GGGCEEEEEECSSTT----TSCTTTTSTTSSCEEEECCCCCH
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhccc--------ccCCEEEEEecCChh----hcCHHHhCCcccceEEecCCCCH
Confidence 975443222 22222233333310 0111 123688999999886 79999999 785 799999999
Q ss_pred HHHHHHHHHHhccc
Q psy17974 558 DTLKVIFKVRTSPG 571 (583)
Q Consensus 558 ~sl~~I~~~~l~~~ 571 (583)
+....|+..+++.+
T Consensus 375 ~~R~~IL~~~l~~~ 388 (806)
T 3cf2_A 375 TGRLEILQIHTKNM 388 (806)
T ss_dssp HHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887654
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.02 E-value=7.3e-10 Score=114.35 Aligned_cols=141 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||||||||++++.+++.+. ..+..++.++++.. ...+...+... ....+....+++.++||||++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~-~~~~~~~~i~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~vL~iDEi~~l 110 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSSADDF--AQAMVEHLKKG----TINEFRNMYKSVDLLLLDDVQFL 110 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH--HHHHHHHHHHT----CHHHHHHHHHTCSEEEEECGGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEHHHH--HHHHHHHHHcC----cHHHHHHHhcCCCEEEEcCcccc
Confidence 6999999999999999999988763 22455666765432 12222222111 00001000112458999999875
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc---eEEEeCCCCHHHHHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF---GLLSLPSPTEDTLKVI 563 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f---~vi~i~~p~~~sl~~I 563 (583)
..+....+..+.+++.+.+.+ ...++++.++|. .-..+.+++.++| .++.+++ +.++...|
T Consensus 111 ~~~~~~~~~l~~~l~~~~~~~--------------~~iii~~~~~~~-~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 111 SGKERTQIEFFHIFNTLYLLE--------------KQIILASDRHPQ-KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKI 174 (324)
T ss_dssp TTCHHHHHHHHHHHHHHHHTT--------------CEEEEEESSCGG-GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHCC--------------CeEEEEecCChH-HHHHhhhHhhhcccCceEEEeCC-CHHHHHHH
Confidence 432111112233343333322 123444444443 2235899999999 7899999 99999999
Q ss_pred HHHHhcc
Q psy17974 564 FKVRTSP 570 (583)
Q Consensus 564 ~~~~l~~ 570 (583)
+...+..
T Consensus 175 l~~~~~~ 181 (324)
T 1l8q_A 175 IKEKLKE 181 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888753
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.01 E-value=1.6e-09 Score=113.65 Aligned_cols=143 Identities=18% Similarity=0.252 Sum_probs=91.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..+++||+||||||||++++++++.+ +..++.++++..... ....+.+...+... ...++.|+||||
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a-------~~~~~~vl~iDE 184 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASSLTSKWVGEGEKMVRALFAVA-------RCQQPAVIFIDE 184 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHH-------HHTCSEEEEEET
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHHhhccccchHHHHHHHHHHHH-------HhcCCeEEEEeC
Confidence 46799999999999999999999876 456777777664331 11112222212111 113467999999
Q ss_pred CCCCCccc-CCCCC-h----HHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCC
Q psy17974 483 VNMPKLET-YGAQP-P----IELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSP 555 (583)
Q Consensus 483 ln~p~~d~-yg~q~-~----lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p 555 (583)
++...... -|.+. . .++|.++. |... ..-.++.+|||+|.+. .+++.+.|+|. ++.++.|
T Consensus 185 id~l~~~~~~~~~~~~~~~~~~lL~~l~---~~~~------~~~~~v~vI~atn~~~----~l~~~l~~Rf~~~i~i~~p 251 (357)
T 3d8b_A 185 IDSLLSQRGDGEHESSRRIKTEFLVQLD---GATT------SSEDRILVVGATNRPQ----EIDEAARRRLVKRLYIPLP 251 (357)
T ss_dssp HHHHTBC------CHHHHHHHHHHHHHH---C----------CCCCEEEEEEESCGG----GBCHHHHTTCCEEEECCCC
T ss_pred chhhhccCCCCcchHHHHHHHHHHHHHh---cccc------cCCCCEEEEEecCChh----hCCHHHHhhCceEEEeCCc
Confidence 97643321 11122 2 23443332 1111 0124688999999875 68999999997 8999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.++...|+..++...
T Consensus 252 ~~~~r~~il~~~~~~~ 267 (357)
T 3d8b_A 252 EASARKQIVINLMSKE 267 (357)
T ss_dssp CHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999998887643
No 42
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.01 E-value=4.1e-09 Score=104.97 Aligned_cols=138 Identities=21% Similarity=0.334 Sum_probs=87.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC------hHHHHHHHHhhhhhhcCccccCCCCCeEEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS------SARTQEILEGKLDKRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt------~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlf 479 (583)
.++++|+||||||||++++.++..+. ...+.++.+.... ...+...+ +.. ..+.++++|
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~a-------~~~~~~il~ 109 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFVEMFVGVGASRVRDMF----EQA-------KKAAPCIIF 109 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT----CCEEEECSCSSTTSCCCCCHHHHHHHH----HHH-------HTTCSEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC----CCEEEEeHHHHHHHhhhhhHHHHHHHH----HHH-------HHcCCeeeh
Confidence 56899999999999999999988762 2345555543221 11222221 111 123467999
Q ss_pred ecCCCCCCcccC----CCCC-hHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EE
Q psy17974 480 VDDVNMPKLETY----GAQP-PIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LL 550 (583)
Q Consensus 480 iDDln~p~~d~y----g~q~-~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi 550 (583)
+||++....+.. |.+. ..+.+.+++.. +++.. -.++.+|+|+|.|. .+++++.| +|. .+
T Consensus 110 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~~vI~~tn~~~----~l~~~l~r~~rf~~~i 177 (257)
T 1lv7_A 110 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--------NEGIIVIAATNRPD----VLDPALLRPGRFDRQV 177 (257)
T ss_dssp ETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--------SSCEEEEEEESCTT----TSCGGGGSTTSSCEEE
T ss_pred hhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--------CCCEEEEEeeCCch----hCCHHHcCCCcCCeEE
Confidence 999964332221 1111 22344444322 22211 24688999999885 78899988 774 79
Q ss_pred EeCCCCHHHHHHHHHHHhcc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~ 570 (583)
.++.|+.++...|+..+++.
T Consensus 178 ~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 178 VVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp ECCCCCHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHHHHHHhc
Confidence 99999999999998887754
No 43
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.00 E-value=7.7e-10 Score=121.07 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=89.7
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCC---C
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLG---K 474 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~g---k 474 (583)
+...+..+.||||+||||||||++++.+...+.. ......+++.. ++++.+.+..... .....+.+. ...| .
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~--~~~f~~~~~~~-~t~~dL~G~~~~~-~~~~~g~~~~~~~g~l~~ 109 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN--ARAFEYLMTRF-STPEEVFGPLSIQ-ALKDEGRYERLTSGYLPE 109 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSS--CCEEEEECCTT-CCHHHHHCCBC-----------CBCCTTSGGG
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhh--hhHHHHHHHhc-CCHHHhcCcccHH-HHhhchhHHhhhccCCCc
Confidence 4455667899999999999999999999887631 11223333322 3554443211100 011122222 2222 3
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-CCCCCCCChhhhccceE-EEe
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GGGRMPLTPRFVRHFGL-LSL 552 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-~~gr~~l~~Rllr~f~v-i~i 552 (583)
..|+||||+|...++ ....|.+.++.+.+.. .... .....-.+|+|+|+. ..|. ..+++++||.+ +.+
T Consensus 110 ~~IL~IDEI~r~~~~------~q~~LL~~lee~~v~i-~G~~-~~~~~~~iI~ATN~lpe~~~--~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA------ILNTLLTAINERQFRN-GAHV-EKIPMRLLVAASNELPEADS--SLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCHH------HHHHHHHHHHSSEEEC-SSSE-EECCCCEEEEEESSCCCTTC--TTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcHH------HHHHHHHHHHHHhccC-CCCc-CCcchhhhhhccccCCCccc--cHHHHHHHHHHHHHH
Confidence 568999999875543 4566777787664432 2222 222222357777763 3333 34789999864 899
Q ss_pred CCCCH-HHHHHHHHHH
Q psy17974 553 PSPTE-DTLKVIFKVR 567 (583)
Q Consensus 553 ~~p~~-~sl~~I~~~~ 567 (583)
++|+. ++...|....
T Consensus 180 ~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQ 195 (500)
T ss_dssp CSCCCHHHHHHHHTCC
T ss_pred HHhhhhhhHHHHHhcc
Confidence 99987 6667776654
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.00 E-value=9e-09 Score=104.51 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=89.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC-----hHHHHHHHHhhhhhhcCccccCCCCCeEEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS-----SARTQEILEGKLDKRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt-----~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlf 479 (583)
.++++||+||||||||++++.++..+ ....+.++++.... .....+.+..... ..++.|+|
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~vl~ 118 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC----SATFLNISAASLTSKYVGDGEKLVRALFAVAR----------HMQPSIIF 118 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT----TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH----------HTCSEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh----CCCeEEeeHHHHhhcccchHHHHHHHHHHHHH----------HcCCcEEE
Confidence 46899999999999999999999876 34566677655322 1111111111111 13457999
Q ss_pred ecCCCCCCcccCC--CCC----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc-eEEEe
Q psy17974 480 VDDVNMPKLETYG--AQP----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF-GLLSL 552 (583)
Q Consensus 480 iDDln~p~~d~yg--~q~----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f-~vi~i 552 (583)
|||++........ ... ..++|+.+-..... ..-.++.+|+|+|.|. .+++.+.|+| ..+.+
T Consensus 119 iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~----~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 119 IDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ----ELDEAALRRFTKRVYV 186 (297)
T ss_dssp EETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG----GBCHHHHHHCCEEEEC
T ss_pred eccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh----hCCHHHHhhCCeEEEe
Confidence 9999875433211 111 12344443321110 0113578999999885 6899999999 58999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~ 571 (583)
+.|+.+....|+..++...
T Consensus 187 ~~p~~~~r~~il~~~~~~~ 205 (297)
T 3b9p_A 187 SLPDEQTRELLLNRLLQKQ 205 (297)
T ss_dssp CCCCHHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 9999999999998887643
No 45
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.99 E-value=4.9e-10 Score=114.37 Aligned_cols=169 Identities=12% Similarity=0.153 Sum_probs=104.2
Q ss_pred ceeeccccCCccccCCCCCCccceeeCchhhhHHHHHHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccC-CceEE
Q psy17974 363 QLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASN-TWAAL 439 (583)
Q Consensus 363 ~w~~W~~~~~~~~~~~~~~~~~i~VpT~dt~r~~~ll~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~ 439 (583)
+|.||.++..+.. +.+ ++-..+. ...+..++..+. +++|+||+|||||++++.+++.+.... ...++
T Consensus 3 ~~~~~~~k~~p~~------~~~-~~g~~~~---~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 3 NFEIWVEKYRPRT------LDE-VVGQDEV---IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp ---CTTTTTSCSS------GGG-SCSCHHH---HHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred ccccHHHhcCCCC------HHH-HhCCHHH---HHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 4678888764422 222 2222221 122344454444 799999999999999999988752111 23355
Q ss_pred EEEeccCCChHHHHHHHHhhhhhhcCccccCC-CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeE
Q psy17974 440 TINFSAQTSSARTQEILEGKLDKRTKTLLGAP-LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWK 518 (583)
Q Consensus 440 ~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~-~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~ 518 (583)
.++.+.......+.+.+...... .|. .+++.|++|||++....+ ..+.|+.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~vliiDe~~~l~~~------~~~~L~~~le~~----------- 129 (319)
T 2chq_A 73 EMNASDERGIDVVRHKIKEFART------APIGGAPFKIIFLDEADALTAD------AQAALRRTMEMY----------- 129 (319)
T ss_dssp EEETTSTTCTTTSSHHHHHHHHS------CCSSSCCCEEEEEETGGGSCHH------HHHTTGGGTSSS-----------
T ss_pred EEeCccccChHHHHHHHHHHHhc------CCCCCCCceEEEEeCCCcCCHH------HHHHHHHHHHhc-----------
Confidence 66766544433333333222111 122 356789999999875443 234444454421
Q ss_pred eecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 519 TLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 519 ~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
..++.+|++++.+. .+.+.+.+++.++.+++|+.+++..+...++.
T Consensus 130 -~~~~~~i~~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 130 -SKSCRFILSCNYVS----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp -SSSEEEEEEESCGG----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEeCChh----hcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 24677888888764 68899999999999999999999998887765
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.99 E-value=4.5e-10 Score=114.68 Aligned_cols=144 Identities=19% Similarity=0.176 Sum_probs=91.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccC---CceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASN---TWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~---~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
+.++||+||||||||++++.+++.+.... ...++.++.+..... ......+...++.. +..|+||
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----------~~~vl~i 136 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----------MGGVLFI 136 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----------TTSEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----------CCCEEEE
Confidence 45799999999999999998887662211 124555554432210 00111111222221 1248999
Q ss_pred cCCCCCCccc---CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccc-eEEEeCCC
Q psy17974 481 DDVNMPKLET---YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHF-GLLSLPSP 555 (583)
Q Consensus 481 DDln~p~~d~---yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f-~vi~i~~p 555 (583)
||++...... -.++..++.|.++++.+. .++.+|++++++. .....+++++.+|| .++.++.|
T Consensus 137 DEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~ 204 (309)
T 3syl_A 137 DEAYYLYRPDNERDYGQEAIEILLQVMENNR------------DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDY 204 (309)
T ss_dssp ETGGGSCCCC---CCTHHHHHHHHHHHHHCT------------TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCC
T ss_pred EChhhhccCCCcccccHHHHHHHHHHHhcCC------------CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCc
Confidence 9998653221 123345667777777542 4678889887653 11123468999999 79999999
Q ss_pred CHHHHHHHHHHHhccc
Q psy17974 556 TEDTLKVIFKVRTSPG 571 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~~ 571 (583)
+.+++..|+..++...
T Consensus 205 ~~~~~~~il~~~l~~~ 220 (309)
T 3syl_A 205 SDEELFEIAGHMLDDQ 220 (309)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999999888643
No 47
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=9.1e-11 Score=131.36 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=93.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCC-----CCCeEEEEecC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP-----LGKRLAVFVDD 482 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~-----~gk~~vlfiDD 482 (583)
||||+||||||||++++.+++.+. ...+ .+...+++..+-. ........+.+... .....|+||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~-r~~~-----~~~~~~~~~~l~~---~~~~~~~~g~~~~~~G~l~~A~~gil~IDE 399 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP-RAVY-----TTGKGSTAAGLTA---AVVREKGTGEYYLEAGALVLADGGIAVIDE 399 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS-CEEC-----CCTTCSTTTTSEE---ECSSGGGTSSCSEEECHHHHHSSSEECCTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCC-Ccee-----cCCCccccccccc---eeeeccccccccccCCeeEecCCCcEEeeh
Confidence 999999999999999998887652 1111 1111111111100 00000011111100 11235899999
Q ss_pred CCCCCcccCCCCChHHHHHHHHHhCCeeec-CCCeeEeecCeEEEEecCCCCCCCC----------CCChhhhccc--eE
Q psy17974 483 VNMPKLETYGAQPPIELLRQFLDFGGLYDR-DKMFWKTLQDVVLCTACAPPGGGRM----------PLTPRFVRHF--GL 549 (583)
Q Consensus 483 ln~p~~d~yg~q~~lElLRq~ld~~g~yd~-~~~~~~~i~~i~~iaa~~p~~~gr~----------~l~~Rllr~f--~v 549 (583)
++...++ ..+.|.+.+|.+.+.-. .......-.++.+|||+||+. |+. .+++.+++|| ..
T Consensus 400 id~l~~~------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~-G~~~~~~~~~~ni~l~~aLl~RFDl~~ 472 (595)
T 3f9v_A 400 IDKMRDE------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF-GRYISERPVSDNINLPPTILSRFDLIF 472 (595)
T ss_dssp TTCCCSH------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTT-CCSCTTSCSCTTTCSCSSSGGGCSCCE
T ss_pred hhhCCHh------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcC-CccCcccCchhccCCCHHHHhhCeEEE
Confidence 9976554 46788899998876532 233334446899999999984 444 8999999999 46
Q ss_pred EEeCCCCHHHHHHHHHHHhcccc
Q psy17974 550 LSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 550 i~i~~p~~~sl~~I~~~~l~~~l 572 (583)
+..++|+.+ ...|...++..+-
T Consensus 473 ~~~~~~~~e-~~~i~~~il~~~~ 494 (595)
T 3f9v_A 473 ILKDQPGEQ-DRELANYILDVHS 494 (595)
T ss_dssp EECCTTHHH-HHHHHHHHHTTTC
T ss_pred EeCCCCCHH-HHHHHHHHHHHhh
Confidence 777888888 7888888877654
No 48
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.98 E-value=1.8e-10 Score=132.10 Aligned_cols=143 Identities=22% Similarity=0.357 Sum_probs=84.5
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEEEEecC
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLAVFVDD 482 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~vlfiDD 482 (583)
...+.+||+||||||||+++++++.++ +...+.+..+. +.....+.-++.-+.+|. +....++|+||||
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~------l~s~~vGese~~vr~lF~~Ar~~~P~IifiDE 578 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPE------LLTMWFGESEANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHH------HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSC
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh----CCceEEeccch------hhccccchHHHHHHHHHHHHHHcCCceeechh
Confidence 345789999999999999999999976 33344332222 111000011111112221 1234579999999
Q ss_pred CCCCCcccC-------CC-C-ChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EE
Q psy17974 483 VNMPKLETY-------GA-Q-PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LL 550 (583)
Q Consensus 483 ln~p~~d~y-------g~-q-~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi 550 (583)
++.-..... |. . -..+||.++ | |+-. -.++.+|||+|.|. .|++.++| ||. .|
T Consensus 579 iDsl~~~R~~~~~~~~~~~~rv~~~lL~~m-d--g~~~--------~~~V~vi~aTN~p~----~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEM-D--GMST--------KKNVFIIGATNRPD----IIDPAILRPGRLDQLI 643 (806)
T ss_dssp GGGCC--------------CHHHHHHHHHH-H--SSCS--------SSSEEEECC-CCSS----SSCHHHHSTTTSCCEE
T ss_pred hhHHhhccCCCCCCCchHHHHHHHHHHHHH-h--CCCC--------CCCEEEEEeCCCch----hCCHhHcCCCcceEEE
Confidence 997543221 11 1 134555444 2 2211 24688999999986 89999999 885 89
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+++.|+.++...|+..+++..
T Consensus 644 ~v~lPd~~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 644 YIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp EC-----CHHHHTTTTTSSCC
T ss_pred EECCcCHHHHHHHHHHHhcCC
Confidence 999999999999998887654
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.97 E-value=6.6e-09 Score=100.43 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=90.9
Q ss_pred HHHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccCC--------------------ceEEEEEeccCCChHHHHHH
Q psy17974 399 MEKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASNT--------------------WAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 399 l~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~~--------------------~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..++..+. +++|+||+|+|||++++.+++.+..... .....+..+.......+...
T Consensus 35 l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (250)
T 1njg_A 35 LANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDL 114 (250)
T ss_dssp HHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHH
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHH
Confidence 334444444 6999999999999999999876632110 01222222222222223322
Q ss_pred HHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 456 ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
++. + ...+..+++.+++|||++....+ ..+.|..+++.. -.++.+|++++.+.
T Consensus 115 ~~~-~------~~~~~~~~~~vlviDe~~~l~~~------~~~~l~~~l~~~------------~~~~~~i~~t~~~~-- 167 (250)
T 1njg_A 115 LDN-V------QYAPARGRFKVYLIDEVHMLSRH------SFNALLKTLEEP------------PEHVKFLLATTDPQ-- 167 (250)
T ss_dssp HHS-C------CCSCSSSSSEEEEEETGGGSCHH------HHHHHHHHHHSC------------CTTEEEEEEESCGG--
T ss_pred HHH-h------hhchhcCCceEEEEECcccccHH------HHHHHHHHHhcC------------CCceEEEEEeCChH--
Confidence 211 1 11233566789999999875432 345555666532 13577888877654
Q ss_pred CCCCChhhhccceEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 536 RMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 536 r~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.+.+.+++.++.+++++.+++..++...+..
T Consensus 168 --~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 168 --KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp --GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred --hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 578899999999999999999999999887753
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.97 E-value=5.5e-09 Score=113.56 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=88.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.+++||+||||||||++++.++... +..++.++.+..... ..-...+...+.. ...+.++|+||||+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~~~~~~~~~g~~~~~~r~lf~~-------A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----NVPFFHISGSDFVELFVGVGAARVRDLFAQ-------AKAHAPCIVFIDEI 117 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGGGTTTCCTTHHHHHHHHHHHH-------HHHTCSEEEEEETG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCHHHHHHHHhcccHHHHHHHHHH-------HHhcCCCEEEEech
Confidence 4689999999999999999999876 334566666553321 0000001111111 11234789999999
Q ss_pred CCCCccc----CCCCC-hHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeCC
Q psy17974 484 NMPKLET----YGAQP-PIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLPS 554 (583)
Q Consensus 484 n~p~~d~----yg~q~-~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~~ 554 (583)
+...... .|..+ ..+.+.+++.. .|+- .-.++.+|||+|.|. .++++++| +|. .+.++.
T Consensus 118 d~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaTn~~~----~Ld~allR~gRFd~~i~i~~ 185 (476)
T 2ce7_A 118 DAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATNRPD----ILDPALLRPGRFDKKIVVDP 185 (476)
T ss_dssp GGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEESCGG----GSCGGGGSTTSSCEEEECCC
T ss_pred hhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEecCChh----hhchhhcccCcceeEeecCC
Confidence 8754432 12222 12334443321 1111 124789999999885 68899988 786 899999
Q ss_pred CCHHHHHHHHHHHhcc
Q psy17974 555 PTEDTLKVIFKVRTSP 570 (583)
Q Consensus 555 p~~~sl~~I~~~~l~~ 570 (583)
|+.+....|+..+++.
T Consensus 186 Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 186 PDMLGRKKILEIHTRN 201 (476)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998877764
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.97 E-value=4.4e-09 Score=109.96 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeE--eecCeEEEEecCCCCCCCCCCChhhhccceEEEe
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWK--TLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSL 552 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~--~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i 552 (583)
+.|+||||++....+ ..+.|+..++.... .... .-.++.+|++++.. ....+++++.+||.++.+
T Consensus 190 ~~vl~IDEi~~l~~~------~~~~L~~~le~~~~-----~~~ii~t~~~~~~i~~t~~~--~~~~l~~~l~sR~~~i~~ 256 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE------SFSFLNRALESDMA-----PVLIMATNRGITRIRGTSYQ--SPHGIPIDLLDRLLIVST 256 (368)
T ss_dssp BCEEEEESGGGSBHH------HHHHHHHHTTCTTC-----CEEEEEESCSEEECBTSSCE--EETTCCHHHHTTEEEEEE
T ss_pred CceEEEhhccccChH------HHHHHHHHhhCcCC-----CeeeeecccceeeeeccCCC--CcccCCHHHHhhccEEEe
Confidence 469999999976543 45666666653211 0000 01123344333210 123689999999999999
Q ss_pred CCCCHHHHHHHHHHHhcc
Q psy17974 553 PSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~ 570 (583)
++|+.+++..|+...+..
T Consensus 257 ~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 257 TPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999987764
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.95 E-value=1e-09 Score=126.32 Aligned_cols=146 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH-HHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ-EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq-~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
++||+||||||||++++.+.+.+. ..+..++.+++|..+...... +.+...+.+ +...|+|+||++..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~-~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~----------~~~~vl~lDEi~~~ 591 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF-GDEESMIRIDMSEYMEKHSTSGGQLTEKVRR----------KPYSVVLLDAIEKA 591 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH-SCTTCEEEEEGGGGCSSCCCC---CHHHHHH----------CSSSEEEEECGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-CCCcceEEEechhcccccccccchhhHHHHh----------CCCeEEEEeCcccc
Confidence 599999999999999999988763 335578899998865432110 001111111 11349999999876
Q ss_pred CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC--------CCCCChhhhccc-eEEEeCCCCH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG--------RMPLTPRFVRHF-GLLSLPSPTE 557 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g--------r~~l~~Rllr~f-~vi~i~~p~~ 557 (583)
.++ +...|.+++|.|.+.+... .-....++.+|+|+|.+... +..+.|.|.+|| .++.+++|+.
T Consensus 592 ~~~------~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~ 664 (758)
T 3pxi_A 592 HPD------VFNILLQVLEDGRLTDSKG-RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK 664 (758)
T ss_dssp CHH------HHHHHHHHHHHSBCC------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH
T ss_pred CHH------HHHHHHHHhccCeEEcCCC-CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH
Confidence 544 6788889999887776432 23445789999999976532 122789999999 6999999999
Q ss_pred HHHHHHHHHHhccc
Q psy17974 558 DTLKVIFKVRTSPG 571 (583)
Q Consensus 558 ~sl~~I~~~~l~~~ 571 (583)
+++..|...++...
T Consensus 665 ~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 665 KHLTEIVSLMSDQL 678 (758)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.95 E-value=3.5e-09 Score=108.37 Aligned_cols=143 Identities=14% Similarity=0.232 Sum_probs=94.6
Q ss_pred HHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhcccC-CceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCC-CC
Q psy17974 399 MEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLASN-TWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPL-GK 474 (583)
Q Consensus 399 l~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~-gk 474 (583)
+..++..+. +++|+||+|+|||++++.+++.+.... ...++.++.+.......+...+..... ..|.. ++
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 110 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR------TKPIGGAS 110 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHH------SCCGGGCS
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHh------hCCcCCCC
Confidence 344555554 799999999999999999988762111 123445554432222223222222111 12222 56
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPS 554 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~ 554 (583)
+.|++|||++....+ ..+.|+.+++... .++.+|++++.+. .+.+.+.+++.++.+++
T Consensus 111 ~~vliiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~i~~~~~~~----~l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 111 FKIIFLDEADALTQD------AQQALRRTMEMFS------------SNVRFILSCNYSS----KIIEPIQSRCAIFRFRP 168 (327)
T ss_dssp CEEEEEETGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGG----GSCHHHHHTEEEEECCC
T ss_pred CeEEEEeCCCcCCHH------HHHHHHHHHHhcC------------CCCeEEEEeCCcc----ccCHHHHhhCcEEEecC
Confidence 779999999876543 3566677776431 3567888887764 58899999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy17974 555 PTEDTLKVIFKVRTS 569 (583)
Q Consensus 555 p~~~sl~~I~~~~l~ 569 (583)
++.+++..++..++.
T Consensus 169 l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 169 LRDEDIAKRLRYIAE 183 (327)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887764
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.95 E-value=2.7e-09 Score=116.63 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=93.2
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
+....+|||+||||||||++++++.+.+ +..++.++++...+. ......+...++. ...++++++||
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~-------A~~~~p~iLfL 303 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEE-------AEKNAPAIIFI 303 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEHHHHHTSCTTHHHHHHHHHHHH-------HHHTCSEEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEchHhhhhhcchhHHHHHHHHHH-------HHhcCCcEEEe
Confidence 3456789999999999999999998875 346777776553211 1111111111221 12244689999
Q ss_pred cCCCCCCcccCCCCC-----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEe
Q psy17974 481 DDVNMPKLETYGAQP-----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSL 552 (583)
Q Consensus 481 DDln~p~~d~yg~q~-----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i 552 (583)
||++.......+.+. ....|..+++.. ..-.++.+|||+|.|. .+++++.| +|. ++.+
T Consensus 304 DEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~----------~~~~~v~vIaaTn~~~----~Ld~al~r~gRf~~~i~i 369 (489)
T 3hu3_A 304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGL----------KQRAHVIVMAATNRPN----SIDPALRRFGRFDREVDI 369 (489)
T ss_dssp ESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS----------CTTSCEEEEEEESCGG----GBCGGGGSTTSSCEEEEC
T ss_pred cchhhhccccccccchHHHHHHHHHHHHhhcc----------ccCCceEEEEecCCcc----ccCHHHhCCCcCceEEEe
Confidence 999764433222221 222233334411 0124789999999985 68899988 775 7999
Q ss_pred CCCCHHHHHHHHHHHhccc
Q psy17974 553 PSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 553 ~~p~~~sl~~I~~~~l~~~ 571 (583)
+.|+.++...|+..+++..
T Consensus 370 ~~P~~~eR~~IL~~~~~~~ 388 (489)
T 3hu3_A 370 GIPDATGRLEILQIHTKNM 388 (489)
T ss_dssp CCCCHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999887654
No 55
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.95 E-value=5.1e-09 Score=108.53 Aligned_cols=84 Identities=24% Similarity=0.397 Sum_probs=61.0
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCC-eeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceE-EEe
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGG-LYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGL-LSL 552 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g-~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~v-i~i 552 (583)
..|+||||++....+ ..+.|+++++.+. .+.+.........++.+|||+||.. ..+++++++||.+ +.+
T Consensus 145 ~~vl~iDEi~~l~~~------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~---~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE---GDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp TEEEEETTGGGSCHH------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS---CCCCHHHHTTCSEEEEC
T ss_pred CCEEEEeChhhCCHH------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC---CCCCHHHHhhcceEEEc
Confidence 569999999976544 5678888888764 3444444444456899999999743 2589999999986 999
Q ss_pred CCC-CHHHHHHHHHHH
Q psy17974 553 PSP-TEDTLKVIFKVR 567 (583)
Q Consensus 553 ~~p-~~~sl~~I~~~~ 567 (583)
++| +.+....|....
T Consensus 216 ~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRR 231 (350)
T ss_dssp CCCCSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 999 455555676553
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.94 E-value=2.9e-09 Score=111.71 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHhcC--CceEEEccCCCcHHHHHHHHHHhhccc------C-CceEEEEEeccCC-ChHHHHHHHHhhhhh
Q psy17974 393 IRFGSIMEKLLLVN--HPVMFTGVTGVGKTVVARSILNKLLAS------N-TWAALTINFSAQT-SSARTQEILEGKLDK 462 (583)
Q Consensus 393 ~r~~~ll~~~l~~~--~~vLL~Gp~GtGKT~li~~~l~~l~~~------~-~~~~~~i~fS~~T-t~~~lq~~ie~~l~~ 462 (583)
.+....+..++..+ .+++|+||||||||++++.+++.+... . .+.++.++++... ++..+...+...+..
T Consensus 30 ~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~ 109 (384)
T 2qby_B 30 RDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTG 109 (384)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcC
Confidence 34445556665554 459999999999999999998875211 1 5677888887766 665544433333310
Q ss_pred hc----C----c----cccCCCCCeEEEEecCCCCCCcccCCCCChHHH-HHHHHHhCCeeecCCCeeEeecCeEEEEec
Q psy17974 463 RT----K----T----LLGAPLGKRLAVFVDDVNMPKLETYGAQPPIEL-LRQFLDFGGLYDRDKMFWKTLQDVVLCTAC 529 (583)
Q Consensus 463 ~~----~----~----~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lEl-LRq~ld~~g~yd~~~~~~~~i~~i~~iaa~ 529 (583)
.. + . .......++.|++|||++...... . .+. +..+.+.. .++.+|+++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~--~---~~~~l~~l~~~~-------------~~~~iI~~t 171 (384)
T 2qby_B 110 FSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR--G---GDIVLYQLLRSD-------------ANISVIMIS 171 (384)
T ss_dssp SCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHST--T---SHHHHHHHHTSS-------------SCEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCC--C---CceeHHHHhcCC-------------cceEEEEEE
Confidence 00 0 0 000001122399999998643221 1 234 55555421 578899998
Q ss_pred CCCCCCCCCCChhhhccc-eEEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 530 APPGGGRMPLTPRFVRHF-GLLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 530 ~p~~~gr~~l~~Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
+.+. ....+.+++.++| .++.+++++.+++..|+...+...+
T Consensus 172 ~~~~-~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~ 214 (384)
T 2qby_B 172 NDIN-VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL 214 (384)
T ss_dssp SSTT-TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS
T ss_pred CCCc-hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc
Confidence 8753 2346889998887 5899999999999999999887433
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.89 E-value=2.8e-10 Score=131.02 Aligned_cols=146 Identities=12% Similarity=0.202 Sum_probs=93.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCCh----HHHHHHHHhhhhhhcCccccCCCCC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSS----ARTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~----~~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
.+.+++|+||||||||++++.++..+... .+..+..++++..... ..+.+.+..-++.- ...+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~-------~~~~ 278 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-------EQDT 278 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH-------SSSS
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH-------HhcC
Confidence 46799999999999999999998765211 1223444444332211 11222222222211 1124
Q ss_pred eEEEEecCCCCCCcccC---CCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-CCCCCCChhhhccceEE
Q psy17974 475 RLAVFVDDVNMPKLETY---GAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-GGRMPLTPRFVRHFGLL 550 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~y---g~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-~gr~~l~~Rllr~f~vi 550 (583)
+.|+||||++....... |.+.+..+|+++++. .++.+|+|++++. .++..++++|.|||.++
T Consensus 279 ~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--------------~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i 344 (758)
T 1r6b_X 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--------------GKIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_dssp CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--------------CCCEEEEEECHHHHHCCCCCTTSSGGGEEEE
T ss_pred CeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--------------CCeEEEEEeCchHHhhhhhcCHHHHhCceEE
Confidence 58999999996532211 233344555554442 2577899998765 46677899999999999
Q ss_pred EeCCCCHHHHHHHHHHHhccc
Q psy17974 551 SLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 551 ~i~~p~~~sl~~I~~~~l~~~ 571 (583)
.++.|+.++...|+..+...+
T Consensus 345 ~v~~p~~~e~~~il~~l~~~~ 365 (758)
T 1r6b_X 345 DITEPSIEETVQIINGLKPKY 365 (758)
T ss_dssp ECCCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 58
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.3e-08 Score=103.86 Aligned_cols=145 Identities=16% Similarity=0.261 Sum_probs=97.1
Q ss_pred HHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCe
Q psy17974 399 MEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKR 475 (583)
Q Consensus 399 l~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~ 475 (583)
+..++..+. +++|+||+|+|||++++.+++.+... ....++.++.+...+...+.+.++.-... . .....+++
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~--~~~~~~~~ 108 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK--K--LHLPPGKH 108 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB--C--CCCCTTCC
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhc--c--ccCCCCCc
Confidence 444555543 59999999999999999998875211 12335556655544445554443322111 1 11124567
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCCC
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSP 555 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~p 555 (583)
.|++|||++....+ ..+.|+.+++... .++.+|.+++.+. .+.+++.+++.++.+++|
T Consensus 109 ~viiiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~il~~~~~~----~l~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 109 KIVILDEADSMTAG------AQQALRRTMELYS------------NSTRFAFACNQSN----KIIEPLQSQCAILRYSKL 166 (323)
T ss_dssp EEEEEESGGGSCHH------HHHTTHHHHHHTT------------TTEEEEEEESCGG----GSCHHHHTTSEEEECCCC
T ss_pred eEEEEECcccCCHH------HHHHHHHHHhccC------------CCceEEEEeCChh----hchhHHHhhceEEeecCC
Confidence 89999999875443 3455666666421 3567888887754 688999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy17974 556 TEDTLKVIFKVRTS 569 (583)
Q Consensus 556 ~~~sl~~I~~~~l~ 569 (583)
+.+++..++..++.
T Consensus 167 ~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 167 SDEDVLKRLLQIIK 180 (323)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988765
No 59
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.89 E-value=7.1e-09 Score=108.37 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=100.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc-----CCceEEEEEeccCCChHHHHHHHHhhhhhhc---C----ccc----
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS-----NTWAALTINFSAQTSSARTQEILEGKLDKRT---K----TLL---- 468 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-----~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~---~----~~~---- 468 (583)
.+.+++|+||||||||++++.+++.+... ..+.++.++++...++..+...+...+.... + ..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45789999999999999999998876321 1567788888877776654443333321100 0 000
Q ss_pred --cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhcc
Q psy17974 469 --GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRH 546 (583)
Q Consensus 469 --~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~ 546 (583)
-...+++.|+||||++...... ...+.|.++++...-+. .-.++.+|++++.+. -...+.+++.++
T Consensus 123 ~~l~~~~~~~vlilDEi~~l~~~~----~~~~~l~~l~~~~~~~~-------~~~~~~~I~~t~~~~-~~~~l~~~l~~r 190 (387)
T 2v1u_A 123 KRLSRLRGIYIIVLDEIDFLPKRP----GGQDLLYRITRINQELG-------DRVWVSLVGITNSLG-FVENLEPRVKSS 190 (387)
T ss_dssp HHHTTSCSEEEEEEETTTHHHHST----THHHHHHHHHHGGGCC------------CEEEEECSCST-TSSSSCHHHHTT
T ss_pred HHHhccCCeEEEEEccHhhhcccC----CCChHHHhHhhchhhcC-------CCceEEEEEEECCCc-hHhhhCHHHHhc
Confidence 0124668899999998753321 12355555554211110 013678899888763 223679999999
Q ss_pred c--eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 547 F--GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 547 f--~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
| .++.+++++.+++..|+...+..
T Consensus 191 ~~~~~i~l~~l~~~~~~~il~~~~~~ 216 (387)
T 2v1u_A 191 LGEVELVFPPYTAPQLRDILETRAEE 216 (387)
T ss_dssp TTSEECCBCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHHh
Confidence 9 68999999999999999998874
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.89 E-value=8.5e-10 Score=127.06 Aligned_cols=136 Identities=16% Similarity=0.271 Sum_probs=82.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc------CCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc-CCCCCeEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS------NTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG-APLGKRLA 477 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~------~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~-p~~gk~~v 477 (583)
.+.|+||+||||||||++++.+++.+... .+..++.+++... ..+ ..+.+.+.++. ....++.|
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~-----~~G----~~e~~l~~~~~~~~~~~~~i 270 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK-----YRG----EFEDRLKKVMDEIRQAGNII 270 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------CTTHHHHHHHHHTCCCCE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccccc-----ccc----hHHHHHHHHHHHHHhcCCEE
Confidence 45699999999999999999998876211 1233444444111 000 11111111111 01134679
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC-CCCCCChhhhccceEEEeCCCC
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFVRHFGLLSLPSPT 556 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~-gr~~l~~Rllr~f~vi~i~~p~ 556 (583)
+||| |++.....|+..++.| ++.+|+|+|++.. +...++++|.|||.+|.++.|+
T Consensus 271 LfiD----------~~~~~~~~L~~~l~~~--------------~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~ 326 (758)
T 3pxi_A 271 LFID----------AAIDASNILKPSLARG--------------ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPS 326 (758)
T ss_dssp EEEC----------C--------CCCTTSS--------------SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCC
T ss_pred EEEc----------CchhHHHHHHHHHhcC--------------CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCC
Confidence 9999 3334445555555422 5789999998752 2346899999999999999999
Q ss_pred HHHHHHHHHHHhccccc
Q psy17974 557 EDTLKVIFKVRTSPGKQ 573 (583)
Q Consensus 557 ~~sl~~I~~~~l~~~l~ 573 (583)
.+++..|+..+...+-.
T Consensus 327 ~~~~~~il~~~~~~~~~ 343 (758)
T 3pxi_A 327 VDESIQILQGLRDRYEA 343 (758)
T ss_dssp HHHHHHHHHHTTTTSGG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988776543
No 61
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.86 E-value=5.9e-10 Score=111.61 Aligned_cols=142 Identities=20% Similarity=0.258 Sum_probs=83.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccC-CCCCeEEEEecCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGA-PLGKRLAVFVDDVN 484 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p-~~gk~~vlfiDDln 484 (583)
.+++||+||||||||++++.+++.+. ...+.++++..... ..+.-.+..+..+.. ...++.|+||||++
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~----~~~~~v~~~~~~~~------~~~~~~~~~~~~~~~a~~~~~~vl~iDEid 113 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAH----VPFFSMGGSSFIEM------FVGLGASRVRDLFETAKKQAPSIIFIDEID 113 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHT----CCCCCCCSCTTTTS------CSSSCSSSSSTTHHHHHHSCSCEEEESCGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC----CCEEEechHHHHHh------hcchHHHHHHHHHHHHHhcCCeEEEEeChh
Confidence 56899999999999999999998762 22333333321110 000000011111110 11235799999998
Q ss_pred CCCccc----------CCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEE
Q psy17974 485 MPKLET----------YGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLS 551 (583)
Q Consensus 485 ~p~~d~----------yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~ 551 (583)
....+. ...+...++|+.+- +... .-.++.+|+|+|.+. .+++++.| +|. .+.
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~---~~~~-------~~~~v~vi~ttn~~~----~ld~~l~r~~Rf~~~i~ 179 (268)
T 2r62_A 114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMD---GFGS-------ENAPVIVLAATNRPE----ILDPALMRPGRFDRQVL 179 (268)
T ss_dssp GTTC----------CCCSCSSTTTTTTTTT---CSSC-------SCSCCEEEECBSCCT----TSCGGGGSSSSSCCCCB
T ss_pred hhcccccccccCCCchhHHHHHHHHHHHhh---Cccc-------CCCCEEEEEecCCch----hcCHhHcCCCCCCeEEE
Confidence 654321 11112223333221 1100 123578999999885 68899988 774 799
Q ss_pred eCCCCHHHHHHHHHHHhccc
Q psy17974 552 LPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 552 i~~p~~~sl~~I~~~~l~~~ 571 (583)
++.|+.++...|+..++...
T Consensus 180 i~~p~~~~r~~il~~~~~~~ 199 (268)
T 2r62_A 180 VDKPDFNGRVEILKVHIKGV 199 (268)
T ss_dssp CCCCCTTTHHHHHHHHTSSS
T ss_pred ecCcCHHHHHHHHHHHHhcC
Confidence 99999999999998887643
No 62
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.86 E-value=4.4e-09 Score=110.43 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=92.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhh----hhhhcCccccCCCCCeEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK----LDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~----l~~~~~~~~~p~~gk~~vlfi 480 (583)
.+.++||+||||||||++++.+++.+ +..++.++++..+.+..+-...+.. +.. ..+.+ ....+.|+||
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-~~~~~--~~~~~~vl~l 122 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----DVPFTMADATTLTEAGYVGEDVENIIQKLLQK-CDYDV--QKAQRGIVYI 122 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHH-TTTCH--HHHHHCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEechHHhcccccccccHHHHHHHHHHH-hhhhH--HhcCCcEEEE
Confidence 45799999999999999999999876 3457778887655433222111111 111 11111 1123569999
Q ss_pred cCCCCCCcccCCCC--------ChHHHHHHHHHhCCeeec----------CCCeeEeecCeEEEEecCCCCC--------
Q psy17974 481 DDVNMPKLETYGAQ--------PPIELLRQFLDFGGLYDR----------DKMFWKTLQDVVLCTACAPPGG-------- 534 (583)
Q Consensus 481 DDln~p~~d~yg~q--------~~lElLRq~ld~~g~yd~----------~~~~~~~i~~i~~iaa~~p~~~-------- 534 (583)
||++....+..+.. .+...|.+++| |..... .+...+.-.|+.+|++++..+-
T Consensus 123 DEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~ 201 (363)
T 3hws_A 123 DQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRV 201 (363)
T ss_dssp ECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHH
T ss_pred eChhhhcccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhh
Confidence 99994333221111 15777788888 443211 1111223357777777765310
Q ss_pred CC---------------------------------CCCChhhhccceEEE-eCCCCHHHHHHHHHH
Q psy17974 535 GR---------------------------------MPLTPRFVRHFGLLS-LPSPTEDTLKVIFKV 566 (583)
Q Consensus 535 gr---------------------------------~~l~~Rllr~f~vi~-i~~p~~~sl~~I~~~ 566 (583)
++ ..+.+.|++||.++. +++|+.+.+..|...
T Consensus 202 ~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 202 ETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred hccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 11 017899999998654 789999999999886
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.83 E-value=3.5e-08 Score=126.09 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=120.8
Q ss_pred cceeeCchhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh
Q psy17974 384 DMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR 463 (583)
Q Consensus 384 ~i~VpT~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~ 463 (583)
.-+|.|+-|-|.-.-+-..+..+.+..+.||+|||||.+++++++.+ +..++.+|||...+...+.+++.+-+.
T Consensus 582 ~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~l----gr~~~vfnC~~~~d~~~~g~i~~G~~~-- 655 (3245)
T 3vkg_A 582 ERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQL----GRFVLVFCCDEGFDLQAMSRIFVGLCQ-- 655 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHT----TCCEEEEECSSCCCHHHHHHHHHHHHH--
T ss_pred CCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHh----CCeEEEEeCCCCCCHHHHHHHHhhHhh--
Confidence 45899999999888888889999999999999999999999999988 335678899999998877666544332
Q ss_pred cCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHH--------HHHhCCeeecC-CCeeEeecCeEEEEecCCCCC
Q psy17974 464 TKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQ--------FLDFGGLYDRD-KMFWKTLQDVVLCTACAPPGG 534 (583)
Q Consensus 464 ~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq--------~ld~~g~yd~~-~~~~~~i~~i~~iaa~~p~~~ 534 (583)
.|-++ .+||+|....+ ++..+-| +.++..-+... .....-..++.+++||||...
T Consensus 656 --------~GaW~--cfDEfNrl~~~------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 656 --------CGAWG--CFDEFNRLEER------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp --------HTCEE--EEETTTSSCHH------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred --------cCcEE--EehhhhcCCHH------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 23343 57999998765 3333322 22333333332 222333357999999999768
Q ss_pred CCCCCChhhhccceEEEeCCCCHHHHHHHH
Q psy17974 535 GRMPLTPRFVRHFGLLSLPSPTEDTLKVIF 564 (583)
Q Consensus 535 gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~ 564 (583)
||.++|..+..+|+.+.++.|+.+.+..|.
T Consensus 720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp GCCCSCHHHHTTEEEEECCSCCHHHHHHHH
T ss_pred CcccChHHHHhhcEEEEEeCCCHHHHHHHH
Confidence 999999999999999999999999988874
No 64
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.82 E-value=3.4e-08 Score=103.51 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHhcC--C--ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC--c
Q psy17974 393 IRFGSIMEKLLLVN--H--PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK--T 466 (583)
Q Consensus 393 ~r~~~ll~~~l~~~--~--~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~--~ 466 (583)
.+....+...+..+ . +++|+||+|||||++++.+++.+.....+.++.++++...++..+...+...+..... +
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~ 106 (389)
T 1fnn_A 27 QQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 106 (389)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCC
Confidence 33444555554432 4 7999999999999999999987732214678888888877665544433332211000 0
Q ss_pred c-----c------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC
Q psy17974 467 L-----L------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG 535 (583)
Q Consensus 467 ~-----~------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g 535 (583)
. + -...+++.|++|||++... +..++.|..+++.. .... -.++.+|++++.+.-
T Consensus 107 ~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------~~~~~~L~~~~~~~---~~~~-----~~~~~iI~~~~~~~~- 171 (389)
T 1fnn_A 107 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------PDILSTFIRLGQEA---DKLG-----AFRIALVIVGHNDAV- 171 (389)
T ss_dssp CCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------HHHHHHHHHHTTCH---HHHS-----SCCEEEEEEESSTHH-
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEEECccccc------hHHHHHHHHHHHhC---CCCC-----cCCEEEEEEECCchH-
Confidence 0 0 0012557899999998762 23455555554311 0000 026788888876521
Q ss_pred CCCCChhhhccce--EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 536 RMPLTPRFVRHFG--LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 536 r~~l~~Rllr~f~--vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
...+.+++.++|. ++.+++++.+++..++...+...
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~ 209 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG 209 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh
Confidence 1147888888887 79999999999999998887653
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=7.4e-08 Score=100.03 Aligned_cols=136 Identities=24% Similarity=0.248 Sum_probs=87.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMP 486 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p 486 (583)
.+++|+||||||||++++.++..+. ......+.+......++...+. . ..++.|+||||++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~----~~~~~~sg~~~~~~~~l~~~~~----~---------~~~~~v~~iDE~~~l 114 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ----TNIHVTSGPVLVKQGDMAAILT----S---------LERGDVLFIDEIHRL 114 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT----CCEEEEETTTCCSHHHHHHHHH----H---------CCTTCEEEEETGGGC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC----CCEEEEechHhcCHHHHHHHHH----H---------ccCCCEEEEcchhhc
Confidence 6899999999999999999998762 1122222222223333332221 1 012348999999875
Q ss_pred CcccCCCCChHHHHHHHHHhCCee-----ecCCCe-eEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeCCCCHHH
Q psy17974 487 KLETYGAQPPIELLRQFLDFGGLY-----DRDKMF-WKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLPSPTEDT 559 (583)
Q Consensus 487 ~~d~yg~q~~lElLRq~ld~~g~y-----d~~~~~-~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~~p~~~s 559 (583)
.. .+.|.|...++..+.. ...... -..+..+.++++++.++ .+++.+.++|. ++.+++++.++
T Consensus 115 ~~------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~----~Ls~~l~sR~~l~~~Ld~~~~~~ 184 (334)
T 1in4_A 115 NK------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG----LLSSPLRSRFGIILELDFYTVKE 184 (334)
T ss_dssp CH------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG----GSCHHHHTTCSEEEECCCCCHHH
T ss_pred CH------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc----cCCHHHHHhcCceeeCCCCCHHH
Confidence 43 2567777777654421 000000 11245688888888875 79999999996 68999999999
Q ss_pred HHHHHHHHhc
Q psy17974 560 LKVIFKVRTS 569 (583)
Q Consensus 560 l~~I~~~~l~ 569 (583)
+..|.....+
T Consensus 185 l~~iL~~~~~ 194 (334)
T 1in4_A 185 LKEIIKRAAS 194 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.78 E-value=5.5e-08 Score=98.29 Aligned_cols=140 Identities=19% Similarity=0.248 Sum_probs=85.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..+.++|+||||||||++++.++..+. ...+.++.+...+. ....+.+..-++. +....++++|+||
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~-------a~~~~p~i~~~De 111 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQR-------AKNSAPCVIFFDE 111 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHH-------HHHTCSEEEEEET
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHH-------HHhcCCCeEeeeh
Confidence 345699999999999999999988752 23444544332221 1111111111111 0122367999999
Q ss_pred CCCCCcccC----C-CCCh-HHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-EEEeC
Q psy17974 483 VNMPKLETY----G-AQPP-IELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG-LLSLP 553 (583)
Q Consensus 483 ln~p~~d~y----g-~q~~-lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~-vi~i~ 553 (583)
++....... + .... .+++. .++.| .. -..+.++|++|.|. .+++.++| +|. .|+++
T Consensus 112 id~~~~~r~~~~~~~~~~~~~~~l~-~Lsgg---~~-------~~~~i~ia~tn~p~----~LD~al~r~gRfd~~i~~~ 176 (274)
T 2x8a_A 112 VDALCPRRSDRETGASVRVVNQLLT-EMDGL---EA-------RQQVFIMAATNRPD----IIDPAILRPGRLDKTLFVG 176 (274)
T ss_dssp CTTTCC---------CTTHHHHHHH-HHHTC---CS-------TTCEEEEEEESCGG----GSCHHHHSTTSSCEEEECC
T ss_pred hhhhhcccCCCcchHHHHHHHHHHH-hhhcc---cc-------cCCEEEEeecCChh----hCCHhhcCcccCCeEEEeC
Confidence 997543211 0 1111 12222 22322 11 12467788888886 78999998 885 79999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy17974 554 SPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~ 570 (583)
.|+.++...|+..+++.
T Consensus 177 ~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 177 LPPPADRLAILKTITKN 193 (274)
T ss_dssp SCCHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHhc
Confidence 99999999999998853
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.77 E-value=7.7e-09 Score=111.67 Aligned_cols=143 Identities=19% Similarity=0.195 Sum_probs=81.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhccc-CCceEEEEEeccCCChHHHHHHHHhh-hhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLAS-NTWAALTINFSAQTSSARTQEILEGK-LDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~-~~~~~~~i~fS~~Tt~~~lq~~ie~~-l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
..|++|+||||||||++++.+.+.+... .+..++.++.+.. ...+.+.+... ... -...+. .++.|+||||+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~-~~~~~~---~~~~vL~IDEi 203 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNE-FREKYR---KKVDILLIDDV 203 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCHHH-HHHHHT---TTCSEEEEECG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHHHHcccHHH-HHHHhc---CCCCEEEEeCc
Confidence 3699999999999999999998765221 1345556654331 12222222211 000 000111 14558999999
Q ss_pred CCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecC-CCCCCCCCCChhhhccc---eEEEeCCCCHHH
Q psy17974 484 NMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACA-PPGGGRMPLTPRFVRHF---GLLSLPSPTEDT 559 (583)
Q Consensus 484 n~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~-p~~~gr~~l~~Rllr~f---~vi~i~~p~~~s 559 (583)
+.-.......+..+..+..+.+. +.++|.+++ ++. .-..+.+|+.++| .++.++.|+.++
T Consensus 204 ~~l~~~~~~q~~l~~~l~~l~~~---------------~~~iIitt~~~~~-~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 204 QFLIGKTGVQTELFHTFNELHDS---------------GKQIVICSDREPQ-KLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHTT---------------TCEEEEEESSCGG-GCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHC---------------CCeEEEEECCCHH-HHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 86443210011122233333321 123444444 443 1224889999999 589999999999
Q ss_pred HHHHHHHHhcc
Q psy17974 560 LKVIFKVRTSP 570 (583)
Q Consensus 560 l~~I~~~~l~~ 570 (583)
+..|+...+..
T Consensus 268 r~~iL~~~~~~ 278 (440)
T 2z4s_A 268 RKSIARKMLEI 278 (440)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 68
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.77 E-value=6.3e-08 Score=105.85 Aligned_cols=143 Identities=22% Similarity=0.302 Sum_probs=86.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCC-CCCeEEEEecCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP-LGKRLAVFVDDVN 484 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~-~gk~~vlfiDDln 484 (583)
.++++|+||||||||++++.++.... ...+.++.+..... .. ....++.+..|.-. ...++++||||++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~--~~----g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEM--FV----GVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSS--CT----THHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHh--hh----hhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 35799999999999999999988752 34556665543221 00 00011111222211 2346799999997
Q ss_pred CCCcccC----CCC-ChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCCC
Q psy17974 485 MPKLETY----GAQ-PPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPSP 555 (583)
Q Consensus 485 ~p~~d~y----g~q-~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~p 555 (583)
....... +.+ ...+.+.+++.. .|+- . -..+.++||+|.|. .++++++| +| .++.++.|
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-~-------~~~viviAatn~p~----~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-K-------DTAIVVMAATNRPD----ILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-S-------SCCCEEEECCSCGG----GSCTTTSSTTSSCCEEECCCC
T ss_pred HHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-c-------CccEEEEEecCChh----hcCcccccccccceEEecCCC
Confidence 5433221 111 122344454432 1111 1 13577889999885 58999988 55 48999999
Q ss_pred CHHHHHHHHHHHhcc
Q psy17974 556 TEDTLKVIFKVRTSP 570 (583)
Q Consensus 556 ~~~sl~~I~~~~l~~ 570 (583)
+.+....|+..+++.
T Consensus 202 d~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 202 DVKGREQILRIHARG 216 (499)
T ss_dssp CHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999877653
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.76 E-value=2.2e-08 Score=105.49 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=88.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHH----HHHHHhhhhhhcCccccCCCCCeEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSART----QEILEGKLDKRTKTLLGAPLGKRLAVFV 480 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~l----q~~ie~~l~~~~~~~~~p~~gk~~vlfi 480 (583)
...++||+||||||||++++.+++.+ +..++.++++..+.+..+ .+.+...+... .+.+ ......|+||
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~--~~~~~~vl~i 143 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDATSLTEAGYVGEDVENILTRLLQAS-DWNV--QKAQKGIVFI 143 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEGGGCC--------CTHHHHHHHHHT-TTCH--HHHTTSEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEecchhhhhcCcCCccHHHHHHHHHhhc-cchh--hhcCCeEEEE
Confidence 35789999999999999999999876 334666777664432211 11111111111 1110 0113458999
Q ss_pred cCCCCCCcccCCC-----C---ChHHHHHHHHHhCCee-ecC--------CCeeEeecCeEEEEecCCCC----------
Q psy17974 481 DDVNMPKLETYGA-----Q---PPIELLRQFLDFGGLY-DRD--------KMFWKTLQDVVLCTACAPPG---------- 533 (583)
Q Consensus 481 DDln~p~~d~yg~-----q---~~lElLRq~ld~~g~y-d~~--------~~~~~~i~~i~~iaa~~p~~---------- 533 (583)
||++....+..+. . .+.+.|.+++|.+... ... +.....-.++.+|+|+|...
T Consensus 144 DEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~ 223 (376)
T 1um8_A 144 DEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTT 223 (376)
T ss_dssp ETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCS
T ss_pred cCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhc
Confidence 9999765442111 0 1667788888833110 010 11112336778888876311
Q ss_pred ----C--C---------------------CCCCChhhhccc-eEEEeCCCCHHHHHHHHHH
Q psy17974 534 ----G--G---------------------RMPLTPRFVRHF-GLLSLPSPTEDTLKVIFKV 566 (583)
Q Consensus 534 ----~--g---------------------r~~l~~Rllr~f-~vi~i~~p~~~sl~~I~~~ 566 (583)
| . ...+.+.|.+|+ .++.+++++.+++..|...
T Consensus 224 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~ 284 (376)
T 1um8_A 224 QNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQK 284 (376)
T ss_dssp SCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred ccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhh
Confidence 0 0 124678899999 6899999999999999973
No 70
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.76 E-value=6.9e-09 Score=94.47 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCC
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP 471 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~ 471 (583)
..+....+..+...+.||||+||||||||++++.+..... ..+..++ ++++...+.....+. ++...+
T Consensus 10 ~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v-~~~~~~~~~~~~~~~----~~~a~~------ 77 (145)
T 3n70_A 10 INQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV-YRELTPDNAPQLNDF----IALAQG------ 77 (145)
T ss_dssp HHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST-TTTSCCE-EEECCTTTSSCHHHH----HHHHTT------
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE-EECCCCCcchhhhcH----HHHcCC------
Confidence 3445556666778899999999999999999999987642 2344566 888776554222222 222111
Q ss_pred CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCCCCChhhhccce
Q psy17974 472 LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRMPLTPRFVRHFG 548 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~~l~~Rllr~f~ 548 (583)
.++||||++....+. .+.|.++++.. -.++.+|+|+|.+-. ....+.+.|..+++
T Consensus 78 ----g~l~ldei~~l~~~~------q~~Ll~~l~~~------------~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~ 135 (145)
T 3n70_A 78 ----GTLVLSHPEHLTREQ------QYHLVQLQSQE------------HRPFRLIGIGDTSLVELAASNHIIAELYYCFA 135 (145)
T ss_dssp ----SCEEEECGGGSCHHH------HHHHHHHHHSS------------SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHH
T ss_pred ----cEEEEcChHHCCHHH------HHHHHHHHhhc------------CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhc
Confidence 368999998765442 23333334210 136789999987521 11245677777765
Q ss_pred E--EEeCC
Q psy17974 549 L--LSLPS 554 (583)
Q Consensus 549 v--i~i~~ 554 (583)
. |.+|+
T Consensus 136 ~~~i~lPp 143 (145)
T 3n70_A 136 MTQIACLP 143 (145)
T ss_dssp HHEEECCC
T ss_pred CCEEeCCC
Confidence 4 55543
No 71
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=2.5e-08 Score=100.11 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC---hHHHHHHHHhhhhhhcCccccCCCCCeEEEEecC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS---SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDD 482 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt---~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDD 482 (583)
..++||+||||||||++++.+++.+ +..++.++.+.... .......+...++... .+++.++||||
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~vl~iDE 132 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY-------KSQLSCVVVDD 132 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHH-------TSSEEEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHH-------hcCCcEEEEEC
Confidence 4589999999999999999999875 33456666554221 1111112222222111 13467999999
Q ss_pred CCCC-CcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh-hhhccc-eEEEeCCCCH-H
Q psy17974 483 VNMP-KLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP-RFVRHF-GLLSLPSPTE-D 558 (583)
Q Consensus 483 ln~p-~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~-Rllr~f-~vi~i~~p~~-~ 558 (583)
++.. .....+....-++++.+.+.-+..... -.++.+|+|+|.+. .+++ ++.++| ..+.+|.++. +
T Consensus 133 id~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~------~~~~~ii~ttn~~~----~l~~~~l~~rf~~~i~~p~l~~r~ 202 (272)
T 1d2n_A 133 IERLLDYVPIGPRFSNLVLQALLVLLKKAPPQ------GRKLLIIGTTSRKD----VLQEMEMLNAFSTTIHVPNIATGE 202 (272)
T ss_dssp HHHHTTCBTTTTBCCHHHHHHHHHHTTCCCST------TCEEEEEEEESCHH----HHHHTTCTTTSSEEEECCCEEEHH
T ss_pred hhhhhccCCCChhHHHHHHHHHHHHhcCccCC------CCCEEEEEecCChh----hcchhhhhcccceEEcCCCccHHH
Confidence 9753 211122222233444443321111111 13577899998874 2334 455665 4688888776 7
Q ss_pred HHHHHHHH
Q psy17974 559 TLKVIFKV 566 (583)
Q Consensus 559 sl~~I~~~ 566 (583)
.+..|...
T Consensus 203 ~i~~i~~~ 210 (272)
T 1d2n_A 203 QLLEALEL 210 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 72
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.75 E-value=3.6e-09 Score=96.21 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=75.5
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCC
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP 471 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~ 471 (583)
..+....+..+...+.||||+||||||||++++.+.... . .++.++++... .. .....++...
T Consensus 13 ~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----~-~~~~~~~~~~~--~~---~~~~~~~~a~------- 75 (143)
T 3co5_A 13 IQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----T-PWVSPARVEYL--ID---MPMELLQKAE------- 75 (143)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----S-CEECCSSTTHH--HH---CHHHHHHHTT-------
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----C-CeEEechhhCC--hH---hhhhHHHhCC-------
Confidence 344556666777889999999999999999999887654 1 34445554311 11 1122222211
Q ss_pred CCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC-CCCCChhhhccceEE
Q psy17974 472 LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG-RMPLTPRFVRHFGLL 550 (583)
Q Consensus 472 ~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g-r~~l~~Rllr~f~vi 550 (583)
..++||||++....+ ....|.++++.+. -.++.+|+|+|.+-.. +..+.++|..++.++
T Consensus 76 ---~~~l~lDei~~l~~~------~q~~Ll~~l~~~~-----------~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~ 135 (143)
T 3co5_A 76 ---GGVLYVGDIAQYSRN------IQTGITFIIGKAE-----------RCRVRVIASCSYAAGSDGISCEEKLAGLFSES 135 (143)
T ss_dssp ---TSEEEEEECTTCCHH------HHHHHHHHHHHHT-----------TTTCEEEEEEEECTTTC--CHHHHHHHHSSSE
T ss_pred ---CCeEEEeChHHCCHH------HHHHHHHHHHhCC-----------CCCEEEEEecCCCHHHHHhCccHHHHHHhcCc
Confidence 237899999986554 2334445565442 2367899999865321 111667777777654
Q ss_pred EeC
Q psy17974 551 SLP 553 (583)
Q Consensus 551 ~i~ 553 (583)
.+.
T Consensus 136 ~i~ 138 (143)
T 3co5_A 136 VVR 138 (143)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=8.9e-08 Score=99.41 Aligned_cols=145 Identities=13% Similarity=0.178 Sum_probs=95.7
Q ss_pred HHHHHHhcCCc--eEEEccCCCcHHHHHHHHHHhhcccC-CceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCC
Q psy17974 398 IMEKLLLVNHP--VMFTGVTGVGKTVVARSILNKLLASN-TWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGK 474 (583)
Q Consensus 398 ll~~~l~~~~~--vLL~Gp~GtGKT~li~~~l~~l~~~~-~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk 474 (583)
.+...+..|.. ++|+||+|||||++++.+++.+.... ...+..++.+.......+.+.+..-.+ ... |..+.
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~--~~~---~~~~~ 110 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS--TRQ---IFSKG 110 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH--BCC---SSSCS
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh--hcc---cCCCC
Confidence 45666777754 99999999999999999988763211 123445555443344444433322111 111 11233
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeCC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPS 554 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~~ 554 (583)
+-|++|||++.-..+ ..+.|+.+++... .++.++.++|.+. .+.+.+.+++.++.+..
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~------------~~~~~il~~n~~~----~i~~~i~sR~~~~~~~~ 168 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYT------------KNTRFCVLANYAH----KLTPALLSQCTRFRFQP 168 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTT------------TTEEEEEEESCGG----GSCHHHHTTSEEEECCC
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCC------------CCeEEEEEecCcc----ccchhHHhhceeEeccC
Confidence 568899999876543 3455667776431 2456777788764 68899999999999999
Q ss_pred CCHHHHHHHHHHHhc
Q psy17974 555 PTEDTLKVIFKVRTS 569 (583)
Q Consensus 555 p~~~sl~~I~~~~l~ 569 (583)
++.+++..+...+++
T Consensus 169 l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 169 LPQEAIERRIANVLV 183 (340)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988887764
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.72 E-value=1.2e-07 Score=98.89 Aligned_cols=134 Identities=19% Similarity=0.276 Sum_probs=87.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCc--------------------eEEEEEeccCCChHHHHHHHHhhhhhhcCcc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTW--------------------AALTINFSAQTSSARTQEILEGKLDKRTKTL 467 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~--------------------~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~ 467 (583)
.++|+||+|||||++++.+++.+...... ....++-+.....+.+.+.++. +.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~------ 112 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQ------ 112 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHH-TT------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHH-Hh------
Confidence 48999999999999999998876311100 1223332222223333333221 11
Q ss_pred ccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc
Q psy17974 468 LGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF 547 (583)
Q Consensus 468 ~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f 547 (583)
..|..+++.|++|||++....+ ..+.|..+++.. ..++.+|.+++.+. .+.+.+.+++
T Consensus 113 ~~~~~~~~~vliiDe~~~l~~~------~~~~Ll~~le~~------------~~~~~~Il~~~~~~----~l~~~l~sr~ 170 (373)
T 1jr3_A 113 YAPARGRFKVYLIDEVHMLSRH------SFNALLKTLEEP------------PEHVKFLLATTDPQ----KLPVTILSRC 170 (373)
T ss_dssp SCCSSSSSEEEEEECGGGSCHH------HHHHHHHHHHSC------------CSSEEEEEEESCGG----GSCHHHHTTS
T ss_pred hccccCCeEEEEEECcchhcHH------HHHHHHHHHhcC------------CCceEEEEEeCChH----hCcHHHHhhe
Confidence 2344567789999999876443 345555555531 23577888877553 5788999999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 548 GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 548 ~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.++.++.|+.+++..+...++..
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998887653
No 75
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.65 E-value=3.7e-08 Score=97.78 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=79.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC--ChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT--SSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T--t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.++++|+||||||||++++.++..+. ...+.++.+... ......+.+..-++. +....+.++|+||+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFET-------AKRHAPCIVFIDEI 117 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHH-------HTTSSSEEEEEETH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHH-------HHhcCCeEEEehhh
Confidence 45699999999999999999988762 223444332110 000001111111111 11123578999999
Q ss_pred CCCCcccCC----CC-ChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCC
Q psy17974 484 NMPKLETYG----AQ-PPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPS 554 (583)
Q Consensus 484 n~p~~d~yg----~q-~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~ 554 (583)
+.......+ .+ ...+.+.+++.. .|. . . -..+.++|+++.|. .++++++| +| .++.++.
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~-~--~-----~~~~i~~a~t~~p~----~ld~~l~r~~rf~~~i~i~~ 185 (254)
T 1ixz_A 118 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-E--K-----DTAIVVMAATNRPD----ILDPALLRPGRFDRQIAIDA 185 (254)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHTC-C--T-----TCCEEEEEEESCGG----GSCGGGGSTTSSCEEEECCS
T ss_pred hhhhcccCccccccchHHHHHHHHHHHHHhCC-C--C-----CCCEEEEEccCCch----hCCHHHcCCCcCCeEEeeCC
Confidence 643222111 11 112223333211 111 0 1 12466778888875 68999998 66 4799999
Q ss_pred CCHHHHHHHHHHHhcc
Q psy17974 555 PTEDTLKVIFKVRTSP 570 (583)
Q Consensus 555 p~~~sl~~I~~~~l~~ 570 (583)
|+.++...|+..+.+.
T Consensus 186 p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 186 PDVKGREQILRIHARG 201 (254)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcC
Confidence 9999999999877654
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.65 E-value=6e-08 Score=97.81 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=81.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC--ChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT--SSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDV 483 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T--t~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDl 483 (583)
.++++|+||||||||++++.++..+. ...+.++.+... ........+..-++.. ....+.++|+||+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~i~~iDei 141 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETA-------KRHAPCIVFIDEI 141 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHH-------HTSCSEEEEEETH
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHH-------HhcCCcEEehhhh
Confidence 45699999999999999999988762 233444432210 0000011111111110 1123578999999
Q ss_pred CCCCcccCC-----CCChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeCC
Q psy17974 484 NMPKLETYG-----AQPPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLPS 554 (583)
Q Consensus 484 n~p~~d~yg-----~q~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~~ 554 (583)
+.......+ .....+.+.+++.. .|.- . -..+.++|+++.|. .++++++| +| .++.++.
T Consensus 142 d~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-~-------~~~~i~~a~t~~p~----~ld~~l~r~~rf~~~i~i~~ 209 (278)
T 1iy2_A 142 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-K-------DTAIVVMAATNRPD----ILDPALLRPGRFDRQIAIDA 209 (278)
T ss_dssp HHHHCC--------CHHHHHHHHHHHHHHTTCC-T-------TCCEEEEEEESCTT----SSCHHHHSTTSSCCEEECCC
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHhCCC-C-------CCCEEEEEecCCch----hCCHhHcCCCcCCeEEEeCC
Confidence 643221111 11122334444321 1111 1 12466788888885 69999998 66 4899999
Q ss_pred CCHHHHHHHHHHHhcc
Q psy17974 555 PTEDTLKVIFKVRTSP 570 (583)
Q Consensus 555 p~~~sl~~I~~~~l~~ 570 (583)
|+.++...|+..+++.
T Consensus 210 p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 210 PDVKGREQILRIHARG 225 (278)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcc
Confidence 9999999999877653
No 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.65 E-value=1.4e-07 Score=98.33 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccC--CceEEEEEeccCCChHHHHHHHHhhhhhh---cC--------cc--ccC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASN--TWAALTINFSAQTSSARTQEILEGKLDKR---TK--------TL--LGA 470 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~--~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~---~~--------~~--~~p 470 (583)
+.+++|+||+|||||++++.+++.+.... ...++.++++...+...+...+...+... .+ .. +-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~ 124 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR 124 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999988763221 46677888766555444333222111100 00 00 001
Q ss_pred CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccc--e
Q psy17974 471 PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHF--G 548 (583)
Q Consensus 471 ~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f--~ 548 (583)
..+++.|++|||++..... ..+..+..|..+++.. . -.++.+|++++.+. ....+.+++.++| .
T Consensus 125 ~~~~~~vlilDE~~~l~~~--~~~~~l~~l~~~~~~~---~--------~~~~~~I~~~~~~~-~~~~~~~~~~~r~~~~ 190 (386)
T 2qby_A 125 DYGSQVVIVLDEIDAFVKK--YNDDILYKLSRINSEV---N--------KSKISFIGITNDVK-FVDLLDPRVKSSLSEE 190 (386)
T ss_dssp TCCSCEEEEEETHHHHHHS--SCSTHHHHHHHHHHSC---C--------C--EEEEEEESCGG-GGGGCTTHHHHTTTTE
T ss_pred ccCCeEEEEEcChhhhhcc--CcCHHHHHHhhchhhc---C--------CCeEEEEEEECCCC-hHhhhCHHHhccCCCe
Confidence 2355889999999764321 1133444444444421 0 13577888877653 1124678888888 6
Q ss_pred EEEeCCCCHHHHHHHHHHHhcccc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSPGK 572 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~~l 572 (583)
.+.+++++.+++..|+...+...+
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~ 214 (386)
T 2qby_A 191 EIIFPPYNAEELEDILTKRAQMAF 214 (386)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHHB
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhc
Confidence 899999999999999998776433
No 78
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.64 E-value=3.6e-07 Score=94.83 Aligned_cols=140 Identities=17% Similarity=0.173 Sum_probs=91.7
Q ss_pred HHHHhcCC---ceEEEccCCCcHHHHHHHHHHhhcccCC--------------------ceEEEEEec---cCCChHHHH
Q psy17974 400 EKLLLVNH---PVMFTGVTGVGKTVVARSILNKLLASNT--------------------WAALTINFS---AQTSSARTQ 453 (583)
Q Consensus 400 ~~~l~~~~---~vLL~Gp~GtGKT~li~~~l~~l~~~~~--------------------~~~~~i~fS---~~Tt~~~lq 453 (583)
...++.|+ .+||+||+|+|||++++.+++.+..... ..+..+.-. ...+.+.+.
T Consensus 15 ~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir 94 (334)
T 1a5t_A 15 VASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVR 94 (334)
T ss_dssp HHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHH
T ss_pred HHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHH
Confidence 33444443 4899999999999999999887632110 123333332 234455555
Q ss_pred HHHHhhhhhhcCccccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 454 EILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 454 ~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++++ .+. ..|..+++-|++|||++.-..+ ..+.|...+|.. ..++.+|.+++.+.
T Consensus 95 ~l~~-~~~------~~~~~~~~kvviIdead~l~~~------a~naLLk~lEep------------~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 95 EVTE-KLN------EHARLGGAKVVWVTDAALLTDA------AANALLKTLEEP------------PAETWFFLATREPE 149 (334)
T ss_dssp HHHH-HTT------SCCTTSSCEEEEESCGGGBCHH------HHHHHHHHHTSC------------CTTEEEEEEESCGG
T ss_pred HHHH-HHh------hccccCCcEEEEECchhhcCHH------HHHHHHHHhcCC------------CCCeEEEEEeCChH
Confidence 4432 121 2344566778999999876543 233444555531 13567787777654
Q ss_pred CCCCCCChhhhccceEEEeCCCCHHHHHHHHHHHh
Q psy17974 534 GGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRT 568 (583)
Q Consensus 534 ~gr~~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l 568 (583)
.+.+.+.+|+.++.++.|+.+++..+.....
T Consensus 150 ----~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 150 ----RLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred ----hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999998877664
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.63 E-value=1.2e-07 Score=109.72 Aligned_cols=143 Identities=20% Similarity=0.295 Sum_probs=91.4
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC--hHHHHHHHHhhhhhhcCccccCCCCCeEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS--SARTQEILEGKLDKRTKTLLGAPLGKRLAVFVD 481 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt--~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiD 481 (583)
..+.+|||+||||||||++++.++..+ ....+.++.+...+ .......+..-++. +..+.+.++|+|
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l----~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~-------a~~~~p~il~iD 304 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLAGESESNLRKAFEE-------AEKNAPAIIFID 304 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT----TCEEEEEEHHHHSSSSTTHHHHHHHHHHHH-------HHHHCSEEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc----CCcEEEEEchHhhhhhhhhHHHHHHHHHHH-------HHhcCCcEEEec
Confidence 446789999999999999999998865 23456666543221 11111111111111 112236799999
Q ss_pred CCCCCCcccCCCCC-----hHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cc-eEEEeC
Q psy17974 482 DVNMPKLETYGAQP-----PIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HF-GLLSLP 553 (583)
Q Consensus 482 Dln~p~~d~yg~q~-----~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f-~vi~i~ 553 (583)
|++.........+. ..+.|..+++ |.-. -.++.+++|+|++. .+++.+.| +| ..+.++
T Consensus 305 Eid~l~~~~~~~~~~~~~~~~~~Ll~ll~--g~~~--------~~~v~vI~atn~~~----~ld~al~r~gRf~~~i~i~ 370 (806)
T 1ypw_A 305 ELDAIAPKREKTHGEVERRIVSQLLTLMD--GLKQ--------RAHVIVMAATNRPN----SIDPALRRFGRFDREVDIG 370 (806)
T ss_dssp SGGGTSCTTSCCCSHHHHHHHHHHHHHHH--SSCT--------TSCCEEEEECSCTT----TSCTTTTSTTSSCEEECCC
T ss_pred cHHHhhhccccccchHHHHHHHHHHHHhh--hhcc--------cccEEEecccCCch----hcCHHHhcccccccccccC
Confidence 99876554333322 2233334443 2211 14688999999986 67888877 77 578999
Q ss_pred CCCHHHHHHHHHHHhccc
Q psy17974 554 SPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l~~~ 571 (583)
.|+.+....|+..+.+..
T Consensus 371 ~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 371 IPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CCCHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999998877654
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.61 E-value=8.7e-08 Score=111.74 Aligned_cols=156 Identities=19% Similarity=0.295 Sum_probs=102.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHh---hhhhhcCcccc-C-CCCCeEEEEec
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG---KLDKRTKTLLG-A-PLGKRLAVFVD 481 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~---~l~~~~~~~~~-p-~~gk~~vlfiD 481 (583)
.++||+||||||||++++.+...+. ..+..++.++++..........++.. ......++.+. . ......|+|+|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~-~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lD 667 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFD 667 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH-SSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEES
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc-CCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEe
Confidence 3789999999999999999988763 33456788888876543221111100 00000011110 0 00123699999
Q ss_pred CCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC--------CC--------------CCCC
Q psy17974 482 DVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG--------GG--------------RMPL 539 (583)
Q Consensus 482 Dln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~--------~g--------------r~~l 539 (583)
|++....+ +...|.|++|.|.+.+.. ..-....++.+|+|+|.+. .| +..+
T Consensus 668 Ei~~l~~~------~~~~Ll~~l~~~~~~~~~-g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f 740 (854)
T 1qvr_A 668 EIEKAHPD------VFNILLQILDDGRLTDSH-GRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHF 740 (854)
T ss_dssp SGGGSCHH------HHHHHHHHHTTTEECCSS-SCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred cccccCHH------HHHHHHHHhccCceECCC-CCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhC
Confidence 99876544 678889999988765543 3345567888999999731 01 3357
Q ss_pred Chhhhccc-eEEEeCCCCHHHHHHHHHHHhcc
Q psy17974 540 TPRFVRHF-GLLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 540 ~~Rllr~f-~vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.+.|++|+ .++.+.+|+.+++..|...++..
T Consensus 741 ~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~ 772 (854)
T 1qvr_A 741 RPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSY 772 (854)
T ss_dssp CHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHH
Confidence 78899999 56777889999999999988764
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=4.2e-07 Score=94.30 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=82.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCC-------------------------ceEEEEEeccCCChH--HHHHHHHhhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNT-------------------------WAALTINFSAQTSSA--RTQEILEGKL 460 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~-------------------------~~~~~i~fS~~Tt~~--~lq~~ie~~l 460 (583)
+++|+||+|+|||++++.++..+..+.. ...+.++.+...... .+.+.++.-.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 117 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVA 117 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHH
Confidence 5999999999999999999885422111 011222222111101 2333332211
Q ss_pred hhhcCcc---ccCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCC
Q psy17974 461 DKRTKTL---LGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRM 537 (583)
Q Consensus 461 ~~~~~~~---~~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~ 537 (583)
....-.. +....+++-|+++||.+.-..+ ..+.|+..++.- ..++.+|.+++.+.
T Consensus 118 ~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~------~~~~L~~~le~~------------~~~~~~Il~t~~~~---- 175 (354)
T 1sxj_E 118 QMEQVDFQDSKDGLAHRYKCVIINEANSLTKD------AQAALRRTMEKY------------SKNIRLIMVCDSMS---- 175 (354)
T ss_dssp TTTC------------CCEEEEEECTTSSCHH------HHHHHHHHHHHS------------TTTEEEEEEESCSC----
T ss_pred HhccccccccccccCCCCeEEEEeCccccCHH------HHHHHHHHHHhh------------cCCCEEEEEeCCHH----
Confidence 1100000 0111345668999999874322 344555566531 13467787777664
Q ss_pred CCChhhhccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 538 PLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 538 ~l~~Rllr~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.+.+.+.+|+.++.++.|+.+++..+...+..
T Consensus 176 ~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~ 207 (354)
T 1sxj_E 176 PIIAPIKSQCLLIRCPAPSDSEISTILSDVVT 207 (354)
T ss_dssp SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhceEEecCCcCHHHHHHHHHHHHH
Confidence 58899999999999999999999999988775
No 82
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.51 E-value=1.1e-08 Score=118.33 Aligned_cols=140 Identities=24% Similarity=0.357 Sum_probs=88.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC------hHHHHHHHHhhhhhhcCccccCCCCCeEE
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS------SARTQEILEGKLDKRTKTLLGAPLGKRLA 477 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt------~~~lq~~ie~~l~~~~~~~~~p~~gk~~v 477 (583)
..+.++||+||||||||++++.++..+. ...+.++.+...+ ...+...+. ... ...++|
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~----~~~i~v~~~~l~~~~~g~~~~~i~~~f~-~a~----------~~~p~v 573 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLTMWFGESEANVREIFD-KAR----------QAAPCV 573 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT----CCCCCCCCSSSTTCCTTTSSHHHHHHHH-HHH----------HHCSBC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC----CCEEEEechHhhhhhcCccHHHHHHHHH-HHH----------hcCCeE
Confidence 3567899999999999999999998762 2233444433211 112222111 111 112468
Q ss_pred EEecCCCCCCcccCCCC-----ChHHHHHHHHHh-CCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhc--cce-
Q psy17974 478 VFVDDVNMPKLETYGAQ-----PPIELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVR--HFG- 548 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q-----~~lElLRq~ld~-~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr--~f~- 548 (583)
+|+||++.-.....+.. ..-+.+.+++.. .|.. .-.++.+|||+|.|. .+++.++| ||.
T Consensus 574 l~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~vI~tTN~~~----~ld~allrpgRf~~ 641 (806)
T 1ypw_A 574 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGATNRPD----IIDPAILRPGRLDQ 641 (806)
T ss_dssp CCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------------CCBCCCCCBSCG----GGSCTTSSGGGTTS
T ss_pred EEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc--------ccCCeEEEEecCCcc----cCCHHHhCccccCc
Confidence 99999986443332221 123455555532 1211 225788999999886 68999999 996
Q ss_pred EEEeCCCCHHHHHHHHHHHhcc
Q psy17974 549 LLSLPSPTEDTLKVIFKVRTSP 570 (583)
Q Consensus 549 vi~i~~p~~~sl~~I~~~~l~~ 570 (583)
.|+++.|+.++...|+..+++.
T Consensus 642 ~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 642 LIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCCCCCCCSHHHHHTTTTTSC
T ss_pred eeecCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999887754
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.47 E-value=1e-06 Score=90.41 Aligned_cols=139 Identities=12% Similarity=0.102 Sum_probs=93.9
Q ss_pred HHHHHhcCC--ceEEEccCCCcHHHHHHHHHHhhc--ccCCceEEEEEecc-CCChHHHHHHHHhhhhhhcCccccCCCC
Q psy17974 399 MEKLLLVNH--PVMFTGVTGVGKTVVARSILNKLL--ASNTWAALTINFSA-QTSSARTQEILEGKLDKRTKTLLGAPLG 473 (583)
Q Consensus 399 l~~~l~~~~--~vLL~Gp~GtGKT~li~~~l~~l~--~~~~~~~~~i~fS~-~Tt~~~lq~~ie~~l~~~~~~~~~p~~g 473 (583)
+...++.++ ..||+||+|+|||++++.+++... ......+..++.+. .++.+++.++++ .+. ..|..+
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~-~~~------~~p~~~ 81 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKD-FLN------YSPELY 81 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHH-HHT------SCCSSS
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHH-HHh------hccccC
Confidence 445566554 689999999999999999987531 11122345555543 456666666543 222 234445
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEeC
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLP 553 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i~ 553 (583)
++-|++|||.+.-..+ ..+.|+..+|.. ..++.||.+|+.|. .+.+.+.+| ++.++
T Consensus 82 ~~kvviIdead~lt~~------a~naLLk~LEep------------~~~t~fIl~t~~~~----kl~~tI~SR--~~~f~ 137 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ------AANAFLKALEEP------------PEYAVIVLNTRRWH----YLLPTIKSR--VFRVV 137 (305)
T ss_dssp SSEEEEETTGGGBCHH------HHHHTHHHHHSC------------CTTEEEEEEESCGG----GSCHHHHTT--SEEEE
T ss_pred CceEEEeccHHHhCHH------HHHHHHHHHhCC------------CCCeEEEEEECChH----hChHHHHce--eEeCC
Confidence 6678899999986554 245566667632 23567777776653 688999999 99999
Q ss_pred CCCHHHHHHHHHHHh
Q psy17974 554 SPTEDTLKVIFKVRT 568 (583)
Q Consensus 554 ~p~~~sl~~I~~~~l 568 (583)
.|+.+++.......+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999998887765
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=3e-07 Score=86.26 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=36.8
Q ss_pred eee-CchhhhHHHHHHHHH-----hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 386 MVP-TIDTIRFGSIMEKLL-----LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 386 ~Vp-T~dt~r~~~ll~~~l-----~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
++| +.+.......+..++ ..+.+++|+||+|||||++++.++..+....+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 12 YHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444 443444444444444 457899999999999999999998876322344444443
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.27 E-value=4.3e-06 Score=93.73 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+...+..+.+++|+||||||||++++.++..+
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5577788899999999999999999999999876
No 86
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.27 E-value=2.1e-06 Score=88.06 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=34.1
Q ss_pred HHHHHHhc-----CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 398 IMEKLLLV-----NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 398 ll~~~l~~-----~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.+..++.. +.+++|+||||||||+++.+++..+....++.+..++++
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 44455554 689999999999999999999887631334566666543
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.26 E-value=5e-06 Score=87.64 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=93.8
Q ss_pred hhHHHHH-HHHHhc----CCceEE--EccCCCcHHHHHHHHHHhhccc-----CCceEEEEEeccCCChHHHHHHHHhhh
Q psy17974 393 IRFGSIM-EKLLLV----NHPVMF--TGVTGVGKTVVARSILNKLLAS-----NTWAALTINFSAQTSSARTQEILEGKL 460 (583)
Q Consensus 393 ~r~~~ll-~~~l~~----~~~vLL--~Gp~GtGKT~li~~~l~~l~~~-----~~~~~~~i~fS~~Tt~~~lq~~ie~~l 460 (583)
.+....+ ...... +..+++ +||+|+|||++++.+++.+... ..+.++.++++...++..+...+...+
T Consensus 32 ~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 111 (412)
T 1w5s_A 32 EALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT 111 (412)
T ss_dssp HHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344444 444433 456888 8999999999999998876321 145677788766666655554443333
Q ss_pred hhhcC--c-----ccc------CCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEE
Q psy17974 461 DKRTK--T-----LLG------APLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCT 527 (583)
Q Consensus 461 ~~~~~--~-----~~~------p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~ia 527 (583)
..... + .+. ...++++|++|||++......-+.+..++.|-.+++.. ..... -.++.+|+
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~---~~~~~----~~~v~lI~ 184 (412)
T 1w5s_A 112 GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI---PSRDG----VNRIGFLL 184 (412)
T ss_dssp TCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS---CCTTS----CCBEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc---ccCCC----CceEEEEE
Confidence 21100 0 000 01256889999999864321001223343222233321 00000 13577887
Q ss_pred ecCCCCCCCCCCC---hhhhccce-EEEeCCCCHHHHHHHHHHHhccc
Q psy17974 528 ACAPPGGGRMPLT---PRFVRHFG-LLSLPSPTEDTLKVIFKVRTSPG 571 (583)
Q Consensus 528 a~~p~~~gr~~l~---~Rllr~f~-vi~i~~p~~~sl~~I~~~~l~~~ 571 (583)
+++.+.- ...+. +++.+++. .+.+++++.+++..++...+...
T Consensus 185 ~~~~~~~-~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~ 231 (412)
T 1w5s_A 185 VASDVRA-LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG 231 (412)
T ss_dssp EEEETHH-HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EeccccH-HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc
Confidence 7764320 00122 44444443 38999999999999998776543
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.24 E-value=8.9e-06 Score=86.12 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc-cC
Q psy17974 392 TIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL-GA 470 (583)
Q Consensus 392 t~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~-~p 470 (583)
..+....+..+...+.||+++|++||||+++++.+.... ....-.++.+||++.. . ..+++.+-...+|.| |.
T Consensus 146 m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s-~r~~~~fv~v~~~~~~-~----~~~~~elfg~~~g~~tga 219 (387)
T 1ny5_A 146 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS-DRSKEPFVALNVASIP-R----DIFEAELFGYEKGAFTGA 219 (387)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS-TTTTSCEEEEETTTSC-H----HHHHHHHHCBCTTSSTTC
T ss_pred hhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc-CCCCCCeEEEecCCCC-H----HHHHHHhcCCCCCCCCCc
Confidence 444555666777788999999999999999998776543 2334467788888743 2 234555544444444 21
Q ss_pred C---C-----CCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC-----CCCC
Q psy17974 471 P---L-----GKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG-----GGRM 537 (583)
Q Consensus 471 ~---~-----gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~-----~gr~ 537 (583)
. . ....++|+||++....+ ....|-++++.|.+....... ..-.|+++|+|+|.+- .|
T Consensus 220 ~~~~~g~~~~a~~gtlfldei~~l~~~------~q~~Ll~~l~~~~~~~~g~~~-~~~~~~rii~at~~~l~~~~~~g-- 290 (387)
T 1ny5_A 220 VSSKEGFFELADGGTLFLDEIGELSLE------AQAKLLRVIESGKFYRLGGRK-EIEVNVRILAATNRNIKELVKEG-- 290 (387)
T ss_dssp CSCBCCHHHHTTTSEEEEESGGGCCHH------HHHHHHHHHHHSEECCBTCCS-BEECCCEEEEEESSCHHHHHHTT--
T ss_pred ccccCCceeeCCCcEEEEcChhhCCHH------HHHHHHHHHhcCcEEeCCCCc-eeeccEEEEEeCCCCHHHHHHcC--
Confidence 1 1 12358999999865443 344555677766655433222 2236899999999752 23
Q ss_pred CCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 538 PLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 538 ~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
.+.+.|..++++ |.+|+.-+ +++..+...++..+
T Consensus 291 ~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~ 328 (387)
T 1ny5_A 291 KFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKF 328 (387)
T ss_dssp SSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHH
Confidence 345666666665 45555433 77877777777654
No 89
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.22 E-value=9.7e-07 Score=94.76 Aligned_cols=141 Identities=14% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHHHHhcCC-------ceEEEccCCCcHHHHHHHH-HHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 397 SIMEKLLLVNH-------PVMFTGVTGVGKTVVARSI-LNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 397 ~ll~~~l~~~~-------~vLL~Gp~GtGKT~li~~~-l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
..+..++..|. ||||+|+||| ||++++.+ .+.++ . .++..-. ..++.. +..+ .... .| +
T Consensus 223 ~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p-R----~~ft~g~-~ss~~g---Lt~s-~r~~-tG-~ 289 (506)
T 3f8t_A 223 KMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP-R----GVYVDLR-RTELTD---LTAV-LKED-RG-W 289 (506)
T ss_dssp HHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS-S----EEEEEGG-GCCHHH---HSEE-EEES-SS-E
T ss_pred HHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC-C----eEEecCC-CCCccC---ceEE-EEcC-CC-c
Confidence 33445555666 9999999999 99999999 55442 2 1111110 111112 1111 1111 23 3
Q ss_pred cCCC-----CCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCC-------C
Q psy17974 469 GAPL-----GKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGG-------R 536 (583)
Q Consensus 469 ~p~~-----gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~g-------r 536 (583)
.... ....++|+||+|...++ ..+.|++.++.+..--. .. ..-.++.+|||+||-+.. .
T Consensus 290 ~~~~G~l~LAdgGvl~lDEIn~~~~~------~qsaLlEaMEe~~VtI~--G~-~lparf~VIAA~NP~~~yd~~~s~~~ 360 (506)
T 3f8t_A 290 ALRAGAAVLADGGILAVDHLEGAPEP------HRWALMEAMDKGTVTVD--GI-ALNARCAVLAAINPGEQWPSDPPIAR 360 (506)
T ss_dssp EEEECHHHHTTTSEEEEECCTTCCHH------HHHHHHHHHHHSEEEET--TE-EEECCCEEEEEECCCC--CCSCGGGG
T ss_pred ccCCCeeEEcCCCeeehHhhhhCCHH------HHHHHHHHHhCCcEEEC--CE-EcCCCeEEEEEeCcccccCCCCCccc
Confidence 2221 12458999999976544 57888899998866432 33 555789999999997511 2
Q ss_pred CCCChhhhccceE--EEeCCCCHHH
Q psy17974 537 MPLTPRFVRHFGL--LSLPSPTEDT 559 (583)
Q Consensus 537 ~~l~~Rllr~f~v--i~i~~p~~~s 559 (583)
..+++.++.||-+ +.+++|+.+.
T Consensus 361 ~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 361 IDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCSCHHHHTTCSEEEETTC------
T ss_pred cCCChHHhhheeeEEEecCCCChhH
Confidence 3899999999954 4467776543
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=1.8e-06 Score=82.27 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=33.4
Q ss_pred HHHHHHhcC------CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 398 IMEKLLLVN------HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 398 ll~~~l~~~------~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.+..++... .+++|+||+|||||++++.++..+. .....+..++++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~~~ 91 (202)
T 2w58_A 40 FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVYVP 91 (202)
T ss_dssp HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEEHH
T ss_pred HHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEhH
Confidence 444555544 7999999999999999999988763 334556666553
No 91
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.21 E-value=1.7e-05 Score=85.64 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=49.9
Q ss_pred EEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-------C--CCCCCCChhhhcc
Q psy17974 476 LAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-------G--GGRMPLTPRFVRH 546 (583)
Q Consensus 476 ~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-------~--~gr~~l~~Rllr~ 546 (583)
.|+||||+|+-..+ ..+.|...++.. ..++.++++ |+. . .+...+++.+++|
T Consensus 297 ~VliIDEa~~l~~~------a~~aLlk~lEe~------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR 357 (456)
T 2c9o_A 297 GVLFVDEVHMLDIE------CFTYLHRALESS------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDR 357 (456)
T ss_dssp CEEEEESGGGCBHH------HHHHHHHHTTST------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTT
T ss_pred eEEEEechhhcCHH------HHHHHHHHhhcc------------CCCEEEEec-CCccccccccccccccccCChhHHhh
Confidence 37788888876543 455555555522 123323343 441 0 1234789999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 547 FGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 547 f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
|.++.+++++.+++..|......
T Consensus 358 ~~~~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 358 VMIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 92
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.16 E-value=1.7e-05 Score=83.37 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=106.2
Q ss_pred chhhhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCcccc
Q psy17974 390 IDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLG 469 (583)
Q Consensus 390 ~dt~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~ 469 (583)
+...+....+........+|++.|++||||+.+++.+..... ...- .+.+||++.... .+++.+-...+|.|.
T Consensus 136 ~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~-r~~~-fv~vnc~~~~~~-----~~~~~lfg~~~g~~t 208 (368)
T 3dzd_A 136 PKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG-RKGA-FVDLNCASIPQE-----LAESELFGHEKGAFT 208 (368)
T ss_dssp HHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC-CCSC-EEEEESSSSCTT-----THHHHHHEECSCSSS
T ss_pred hHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc-ccCC-cEEEEcccCChH-----HHHHHhcCccccccC
Confidence 344555666777778889999999999999999998765432 2222 778898875432 334555333444442
Q ss_pred C-CC--------CCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCC---CCC
Q psy17974 470 A-PL--------GKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG---GRM 537 (583)
Q Consensus 470 p-~~--------gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~---gr~ 537 (583)
. .. ....++|+||++--..+ ....|-++++.|.+....... ..-.|+++|+|+|.+-. ...
T Consensus 209 ga~~~~~g~~~~a~~gtlfldei~~l~~~------~Q~~Ll~~l~~~~~~~~g~~~-~~~~~~rii~at~~~l~~~v~~g 281 (368)
T 3dzd_A 209 GALTRKKGKLELADQGTLFLDEVGELDQR------VQAKLLRVLETGSFTRLGGNQ-KIEVDIRVISATNKNLEEEIKKG 281 (368)
T ss_dssp SCCCCEECHHHHTTTSEEEEETGGGSCHH------HHHHHHHHHHHSEECCBTCCC-BEECCCEEEEEESSCHHHHHHTT
T ss_pred CcccccCChHhhcCCCeEEecChhhCCHH------HHHHHHHHHHhCCcccCCCCc-ceeeeeEEEEecCCCHHHHHHcC
Confidence 1 11 12347999999876544 345566677777666443322 22458999999986521 111
Q ss_pred CCChhhhccceE--EEeCCCCH--HHHHHHHHHHhccc
Q psy17974 538 PLTPRFVRHFGL--LSLPSPTE--DTLKVIFKVRTSPG 571 (583)
Q Consensus 538 ~l~~Rllr~f~v--i~i~~p~~--~sl~~I~~~~l~~~ 571 (583)
.+.+.|..+.++ |.+|+..+ +++..+...++..+
T Consensus 282 ~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~ 319 (368)
T 3dzd_A 282 NFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKF 319 (368)
T ss_dssp SSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHH
T ss_pred CccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHH
Confidence 345667667765 55777666 67777777777654
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=8.9e-06 Score=74.34 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=30.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
.+.++.|+||+|+|||++++.++..+. ..+...+.++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-EAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-TTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEcHHH
Confidence 688999999999999999999988763 2344566665443
No 94
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.96 E-value=4e-05 Score=82.27 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCccc--CCCCChH----HHHHHHHHhCCeeecCCCeeEeecCeEEEEec-----CCCCCCCCCCChhh
Q psy17974 475 RLAVFVDDVNMPKLET--YGAQPPI----ELLRQFLDFGGLYDRDKMFWKTLQDVVLCTAC-----APPGGGRMPLTPRF 543 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~--yg~q~~l----ElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~-----~p~~~gr~~l~~Rl 543 (583)
..++|+||++-...+. ++..+.- ..|-+++|.. --..+ .--....++.||||. +|. .+.|.|
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~-~~~~~-~~~~d~~~ilfI~~gaf~~~~~~-----dlipel 323 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS-TVSTK-HGMVKTDHILFIASGAFQVARPS-----DLIPEL 323 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCC-EEEET-TEEEECTTCEEEEEECCSSCCGG-----GSCHHH
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccc-ccccc-cceecCCcEEEEeccccccCChh-----hcchHH
Confidence 3489999998654432 2322222 3455667732 21111 112345678899885 332 355889
Q ss_pred hccceE-EEeCCCCHHHHHHHHH
Q psy17974 544 VRHFGL-LSLPSPTEDTLKVIFK 565 (583)
Q Consensus 544 lr~f~v-i~i~~p~~~sl~~I~~ 565 (583)
+.||.+ +.++..+.+++.+|..
T Consensus 324 ~~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 324 QGRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHH
T ss_pred hcccceeeeCCCCCHHHHHHHHH
Confidence 999987 8999999999999983
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.93 E-value=0.00011 Score=73.60 Aligned_cols=142 Identities=13% Similarity=0.124 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHhcC---C-ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccc
Q psy17974 393 IRFGSIMEKLLLVN---H-PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468 (583)
Q Consensus 393 ~r~~~ll~~~l~~~---~-~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~ 468 (583)
+.....+..+++.. + .++|+||||||||++++++++.+. . .-.++++. ....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~---l--~G~vn~~~------------------~~f~l 143 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP---F--YGCVNWTN------------------ENFPF 143 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS---C--EEECCTTC------------------SSCTT
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc---c--cceeeccc------------------ccccc
Confidence 45556677787764 2 599999999999999999998641 1 11224432 11223
Q ss_pred cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCee-ecCCCeeEeecCeEEEEecCCCC-C---C---CCCCC
Q psy17974 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLY-DRDKMFWKTLQDVVLCTACAPPG-G---G---RMPLT 540 (583)
Q Consensus 469 ~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~y-d~~~~~~~~i~~i~~iaa~~p~~-~---g---r~~l~ 540 (583)
.+..+++ +++.||.++.. ...+.+|.+++.+..- |.+...-..+...-+|.++|..- . | .....
T Consensus 144 ~~~~~k~-i~l~Ee~~~~~-------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~ 215 (267)
T 1u0j_A 144 NDCVDKM-VIWWEEGKMTA-------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ 215 (267)
T ss_dssp GGGSSCS-EEEECSCCEET-------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH
T ss_pred ccccccE-EEEeccccchh-------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh
Confidence 3333444 55688887743 2457799988644332 32222223677788888888621 1 1 12456
Q ss_pred hhhhccceEEEeC--------CCCHHHHHHHHH
Q psy17974 541 PRFVRHFGLLSLP--------SPTEDTLKVIFK 565 (583)
Q Consensus 541 ~Rllr~f~vi~i~--------~p~~~sl~~I~~ 565 (583)
+.|.+|..++.++ ..+.++....|.
T Consensus 216 ~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 216 QPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp HHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred HHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH
Confidence 7899999999998 788999988887
No 96
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.86 E-value=2.2e-05 Score=75.43 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=73.4
Q ss_pred HHHHHHHhc---CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCC
Q psy17974 397 SIMEKLLLV---NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLG 473 (583)
Q Consensus 397 ~ll~~~l~~---~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~g 473 (583)
..++.+++. +..++++||||||||+++.++++.+.. . .+.|....+ ...+.+..+
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g--~----i~~fans~s----------------~f~l~~l~~ 103 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG--A----VISFVNSTS----------------HFWLEPLTD 103 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC--E----ECCCCCSSS----------------CGGGGGGTT
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC--C----eeeEEeccc----------------hhhhcccCC
Confidence 334455543 125999999999999999999987731 1 122311110 011223233
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCe-eecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccceEEEe
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGL-YDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSL 552 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~-yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~vi~i 552 (583)
.+ ++++||+..+..+ -.-+.+|.++|.... -|.+-..-..+...-+|-|+|.+-.. ...-+++.+|..++..
T Consensus 104 ~k-IiiLDEad~~~~~-----~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~-~~~~~~L~SRi~~f~F 176 (212)
T 1tue_A 104 TK-VAMLDDATTTCWT-----YFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK-DNRWPYLESRITVFEF 176 (212)
T ss_dssp CS-SEEEEEECHHHHH-----HHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS-SSSCHHHHTSCEEEEC
T ss_pred CC-EEEEECCCchhHH-----HHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc-ccchhhhhhhEEEEEc
Confidence 34 6789998753211 123678888885432 12222223345555677888875322 1223788889998888
Q ss_pred CCC
Q psy17974 553 PSP 555 (583)
Q Consensus 553 ~~p 555 (583)
+.|
T Consensus 177 ~~~ 179 (212)
T 1tue_A 177 PNA 179 (212)
T ss_dssp CSC
T ss_pred CCC
Confidence 844
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=0.00018 Score=73.63 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=85.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC-----CChHHHHHHHHhhhhh-------------hc
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ-----TSSARTQEILEGKLDK-------------RT 464 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~-----Tt~~~lq~~ie~~l~~-------------~~ 464 (583)
+.. ..++++||+|+|||++++.+++... . ..+.+++... .+...+...+...+.. ..
T Consensus 28 l~~-~~v~i~G~~G~GKT~L~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~ 102 (357)
T 2fna_A 28 LRA-PITLVLGLRRTGKSSIIKIGINELN--L--PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNI 102 (357)
T ss_dssp TCS-SEEEEEESTTSSHHHHHHHHHHHHT--C--CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTS
T ss_pred hcC-CcEEEECCCCCCHHHHHHHHHHhcC--C--CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhccc
Confidence 444 6899999999999999999988762 1 2456776542 2333333332222210 00
Q ss_pred ------------------Cccc-------cCCCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEe
Q psy17974 465 ------------------KTLL-------GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKT 519 (583)
Q Consensus 465 ------------------~~~~-------~p~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~ 519 (583)
...+ .....++++++|||++..... .+...+++||.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~--~~~~~~~~l~~~~~~~------------ 168 (357)
T 2fna_A 103 QGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL--RGVNLLPALAYAYDNL------------ 168 (357)
T ss_dssp TTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC--TTCCCHHHHHHHHHHC------------
T ss_pred ceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc--CchhHHHHHHHHHHcC------------
Confidence 0000 000103889999999875431 1234688898887742
Q ss_pred ecCeEEEEecCCCCC-C----CCCCChhhhcc-ceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 520 LQDVVLCTACAPPGG-G----RMPLTPRFVRH-FGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 520 i~~i~~iaa~~p~~~-g----r~~l~~Rllr~-f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
.++.+|.+..+... . .......+..+ ...+.+++.+.++...++...+.
T Consensus 169 -~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 169 -KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp -TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred -CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 24566766554310 0 01112223333 36899999999999998887654
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.74 E-value=0.00035 Score=71.40 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC------ChHHHHHHHHhhhhh------hc--
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT------SSARTQEILEGKLDK------RT-- 464 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T------t~~~lq~~ie~~l~~------~~-- 464 (583)
+..++..+..++++||+|+|||++++.+++.. + .+.+++.... +...+...+...+.. ..
T Consensus 24 L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 97 (350)
T 2qen_A 24 LEESLENYPLTLLLGIRRVGKSSLLRAFLNER----P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKI 97 (350)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHHHS----S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTC
T ss_pred HHHHHhcCCeEEEECCCcCCHHHHHHHHHHHc----C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhcee
Confidence 34445557899999999999999999998864 2 5567765432 333433333222211 00
Q ss_pred -----C-------c----ccc-----CCCCCeEEEEecCCCCCCcc-cCCCCChHHHHHHHHHhCCeeecCCCeeEeecC
Q psy17974 465 -----K-------T----LLG-----APLGKRLAVFVDDVNMPKLE-TYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQD 522 (583)
Q Consensus 465 -----~-------~----~~~-----p~~gk~~vlfiDDln~p~~d-~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~ 522 (583)
+ . .+. ....++++++|||++....- +-.....+++|+.+.+.. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-------------~~ 164 (350)
T 2qen_A 98 SLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-------------PN 164 (350)
T ss_dssp CCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-------------TT
T ss_pred EEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-------------CC
Confidence 0 0 000 00012789999999875430 001123578888887742 24
Q ss_pred eEEEEecCCCCC-CC----CCCChhhh-ccceEEEeCCCCHHHHHHHHHHHhc
Q psy17974 523 VVLCTACAPPGG-GR----MPLTPRFV-RHFGLLSLPSPTEDTLKVIFKVRTS 569 (583)
Q Consensus 523 i~~iaa~~p~~~-gr----~~l~~Rll-r~f~vi~i~~p~~~sl~~I~~~~l~ 569 (583)
+.+|.+..+... .+ ......+. |....+.+++.+.++...++...+.
T Consensus 165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~ 217 (350)
T 2qen_A 165 LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFR 217 (350)
T ss_dssp EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHH
Confidence 566666443210 00 01122233 3345899999999999888876543
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.42 E-value=0.0002 Score=73.52 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=54.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe------ccC-CChHHHHHHHHhhhhhhcCccccCCCCCeEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF------SAQ-TSSARTQEILEGKLDKRTKTLLGAPLGKRLA 477 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f------S~~-Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~v 477 (583)
.+..++|+||||||||+++.+++... .. .+.++.+ +.. ...+.+.+.+...+.+ .+ +
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~--G~--~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-----------~~-L 185 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL--GG--KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-----------HR-V 185 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH--HT--TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-----------CS-E
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC--CC--CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-----------CC-E
Confidence 34567999999999999999988752 11 2223333 111 2233332223333332 12 7
Q ss_pred EEecCCCCCCcccCC-------CCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC
Q psy17974 478 VFVDDVNMPKLETYG-------AQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG 533 (583)
Q Consensus 478 lfiDDln~p~~d~yg-------~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~ 533 (583)
++||++........+ .+...++|+.+...- .-.++.++++.||..
T Consensus 186 LVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~-----------k~~gvtVIlttnp~s 237 (331)
T 2vhj_A 186 IVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMA-----------ASRGCVVIASLNPTS 237 (331)
T ss_dssp EEEECCTTTC-----------CCHHHHHHHHHHHHHH-----------HHHTCEEEEECCCSS
T ss_pred EEEecccccccccccccccchHHHHHHHHHHHHHHHH-----------hhCCCEEEEEeCCcc
Confidence 899999976443333 122345555554311 012567788888654
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.86 E-value=0.002 Score=69.43 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=22.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+.++++.|++|||||+++..++..+.
T Consensus 45 ~~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 45 KHHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44999999999999999999887763
No 101
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.85 E-value=0.0011 Score=62.47 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCCh--HHHHHHHHhhhh----hhcCccccCCCCCeEEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS--ARTQEILEGKLD----KRTKTLLGAPLGKRLAVF 479 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~--~~lq~~ie~~l~----~~~~~~~~p~~gk~~vlf 479 (583)
++-++++||+|+|||+++..++.+.. ..+..+..+.+...+.. ..+..-+..... ......+....++.-+++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvvi 81 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVF 81 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEE
Confidence 45678999999999999877666542 22344444444322110 000000000000 000011111113456899
Q ss_pred ecCCCCCCcccCCCCChHHHHHHHHHh
Q psy17974 480 VDDVNMPKLETYGAQPPIELLRQFLDF 506 (583)
Q Consensus 480 iDDln~p~~d~yg~q~~lElLRq~ld~ 506 (583)
|||++.-.+ ..++.|+.+.+.
T Consensus 82 IDE~Q~~~~------~~~~~l~~l~~~ 102 (184)
T 2orw_A 82 IDEVQFFNP------SLFEVVKDLLDR 102 (184)
T ss_dssp ECCGGGSCT------THHHHHHHHHHT
T ss_pred EECcccCCH------HHHHHHHHHHHC
Confidence 999987533 367888888874
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.68 E-value=0.004 Score=59.46 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
-.|++|+||||||+.+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999998776543
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0059 Score=59.39 Aligned_cols=94 Identities=15% Similarity=0.084 Sum_probs=51.7
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC--------ccc---c--C
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK--------TLL---G--A 470 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~--------~~~---~--p 470 (583)
..|.=++++||+|+|||+++..++.+.. ..+..+..+++...+. . . ..+-+++.-... ..+ . .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~r-~-~-~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDTR-S-I-RNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCGG-G-C-SSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCch-H-H-HHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 4466789999999999999888877663 2344555565544221 0 0 001111100000 000 0 0
Q ss_pred CCCCeEEEEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 471 PLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 471 ~~gk~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
..++.-+|+|||++.-..+ .++.++.+.+.|
T Consensus 86 ~~~~~dvViIDEaQ~l~~~------~ve~l~~L~~~g 116 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDR------ICEVANILAENG 116 (223)
T ss_dssp SCTTCCEEEECSGGGSCTH------HHHHHHHHHHTT
T ss_pred hCCCCCEEEEecCccCcHH------HHHHHHHHHhCC
Confidence 1234558999999864332 678888887753
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.45 E-value=0.013 Score=60.27 Aligned_cols=136 Identities=10% Similarity=0.016 Sum_probs=82.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCccccCCCCCeEEEEecCCCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNM 485 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~~~~p~~gk~~vlfiDDln~ 485 (583)
.+..|++||+|.||+..++.+++.+...+......+.+.+..+...+.+. +.. .|-.+.+-|++|||.++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~------~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSL----CQA------MSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHH----HHH------HHHCCSCEEEEEECCSS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHH----hcC------cCCccCCeEEEEECCCC
Confidence 35678899999999999998887652221111122344443343333222 111 12123445788999987
Q ss_pred -CCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCC--CCCCCCChhhhccceEEEeCCCCHHHHHH
Q psy17974 486 -PKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPG--GGRMPLTPRFVRHFGLLSLPSPTEDTLKV 562 (583)
Q Consensus 486 -p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~--~gr~~l~~Rllr~f~vi~i~~p~~~sl~~ 562 (583)
...+ ..+.|..+++.- ..++.+|-+++.+. ..+..+.+.+.+++.++.+..++.+++..
T Consensus 88 kl~~~------~~~aLl~~le~p------------~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPNAA------INEQLLTLTGLL------------HDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCCTT------HHHHHHHHHTTC------------BTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred CCChH------HHHHHHHHHhcC------------CCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 5433 445555666521 13455555544322 33556788889999999999999999887
Q ss_pred HHHHHhc
Q psy17974 563 IFKVRTS 569 (583)
Q Consensus 563 I~~~~l~ 569 (583)
.....++
T Consensus 150 ~l~~~~~ 156 (343)
T 1jr3_D 150 WVAARAK 156 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.42 E-value=0.0085 Score=74.62 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHh-----cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC
Q psy17974 399 MEKLLL-----VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS 448 (583)
Q Consensus 399 l~~~l~-----~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt 448 (583)
++.++. .+..++|+||||||||+++.+++.+.. ..+..+.++.+.....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~ 1468 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALD 1468 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccC
Confidence 555555 678999999999999999999877653 3355677776655433
No 106
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.0016 Score=61.63 Aligned_cols=25 Identities=20% Similarity=0.662 Sum_probs=22.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+|++|+||+|+|||++++.++...
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3799999999999999999998875
No 107
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0029 Score=59.88 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=24.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+..++|+||+|||||++++.++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999876
No 108
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.98 E-value=0.0037 Score=57.51 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+|+||||||++++.+.+.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999999876
No 109
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.89 E-value=0.0039 Score=59.21 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=25.1
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+..++|+||+|||||++++.++..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35578899999999999999999998876
No 110
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.84 E-value=0.0046 Score=57.31 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++.++|+||+|||||++++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998876
No 111
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0045 Score=57.63 Aligned_cols=26 Identities=19% Similarity=0.540 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+.+.|+||+|+|||++++.++..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999988764
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.81 E-value=0.0047 Score=58.56 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=21.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|+.+.|+||+|+|||++++.++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999887754
No 113
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.77 E-value=0.043 Score=53.36 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=76.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcCc--cc-----c-----C-CCC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT--LL-----G-----A-PLG 473 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~~--~~-----~-----p-~~g 473 (583)
.++++.|++|+|||+++-+++..+. ..++.+..+...++..+.... .+. .++..... .+ . . -..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~V~v~d~D~q~~~~~~a-l~~-gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVRVMAGVVETHGRAETEA-LLN-GLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCTTCHHHHH-HHT-TSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCCEEEEEeCCCCChhHHH-Hhc-CccccCcceeecCCcccccccHHHHHhc
Confidence 4799999999999999888877663 346677777776665544322 222 12210000 00 0 0 012
Q ss_pred CeEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCC-------------C-CCCCCC
Q psy17974 474 KRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-------------G-GGRMPL 539 (583)
Q Consensus 474 k~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~-------------~-~gr~~l 539 (583)
++-++.|||+-.-..+...+.--.+.+-..++.| +.+++|.|-. | .-+..+
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg---------------idVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG---------------IDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT---------------CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC---------------CCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 3457889998753333333333445554444433 2233333311 1 235678
Q ss_pred Chhhhccce-EEEeCCCCHHHHHH
Q psy17974 540 TPRFVRHFG-LLSLPSPTEDTLKV 562 (583)
Q Consensus 540 ~~Rllr~f~-vi~i~~p~~~sl~~ 562 (583)
+.+++.... |..+|-|.++ |.+
T Consensus 149 pd~~~~~a~~v~lvD~~p~~-l~~ 171 (228)
T 2r8r_A 149 PDWVLQEAFDLVLIDLPPRE-LLE 171 (228)
T ss_dssp CHHHHHTCSEEEEBCCCHHH-HHH
T ss_pred ccHHHhhCCeEEEecCCHHH-HHH
Confidence 999999884 6777766555 444
No 114
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.71 E-value=0.0062 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=22.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+||+|||||++++.+...+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999988865
No 115
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.65 E-value=0.01 Score=64.78 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
..+...+..|..++++||+||||||+++.++.-+.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45667788999999999999999999999887663
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.64 E-value=0.0038 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|..+.|+||+||||||+++.++..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 345678999999999999999988775
No 117
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0082 Score=55.92 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.0
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+...+..+.|+|++|||||++++.+.+.+
T Consensus 5 ~m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 5 KLKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HHTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34566789999999999999999998876
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.59 E-value=0.0062 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+|+||+|||||++++.+.+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.56 E-value=0.0077 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=23.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..++|+|++|||||++++.+...+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 120
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.55 E-value=0.0098 Score=55.04 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=25.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.++|+|++|||||++++.+.+.+. ..++.+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD-NQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEE
Confidence 479999999999999999988773 223334444
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.54 E-value=0.0092 Score=54.01 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-++|+||||||||++++.+ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999988 654
No 122
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.54 E-value=0.01 Score=65.75 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=27.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.+..+++.||||||||+++..++..+. ..+..+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~-~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE-SLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 467899999999999999999887663 234444433
No 123
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.50 E-value=0.0074 Score=55.87 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+|++|||||++++.+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998876
No 124
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.46 E-value=0.0072 Score=55.40 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.3
Q ss_pred ceEEEccCCCcHHHHHHHHHH
Q psy17974 408 PVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~ 428 (583)
-++++|+||||||++++.+.+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999999887
No 125
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.44 E-value=0.11 Score=57.32 Aligned_cols=77 Identities=14% Similarity=0.139 Sum_probs=51.3
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCChhhhccce-EEEeC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFG-LLSLP 553 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~Rllr~f~-vi~i~ 553 (583)
+++++|||++.-.... + ..+.+.|.++...|.= -++.+|.|+..|+. ..++..+...|. .|.+.
T Consensus 344 ~ivvVIDE~~~L~~~~-~-~~~~~~L~~Iar~GRa-----------~GIhLIlaTQRPs~--d~I~~~Iran~~~RI~lr 408 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-G-KKVEELIARIAQKARA-----------AGIHLILATQRPSV--DVITGLIKANIPTRIAFQ 408 (574)
T ss_dssp EEEEEESCCTTHHHHT-C-HHHHHHHHHHHHHCTT-----------TTEEEEEEESCCCT--TTSCHHHHHTCCEEEEEC
T ss_pred cEEEEEeCHHHHhhhh-h-HHHHHHHHHHHHHHhh-----------CCeEEEEEecCccc--ccccHHHHhhhccEEEEE
Confidence 5799999998432211 1 2356778888776632 25778877777652 257777877776 47777
Q ss_pred CCCHHHHHHHHHH
Q psy17974 554 SPTEDTLKVIFKV 566 (583)
Q Consensus 554 ~p~~~sl~~I~~~ 566 (583)
-.+..+...|+..
T Consensus 409 v~s~~Dsr~ILd~ 421 (574)
T 2iut_A 409 VSSKIDSRTILDQ 421 (574)
T ss_dssp CSCHHHHHHHHSS
T ss_pred cCCHHHHHHhcCc
Confidence 7888887777753
No 126
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.38 E-value=0.016 Score=60.33 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++..+..|..+.++||+|+||||+++.++...
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5567888999999999999999999999998765
No 127
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.35 E-value=0.0073 Score=57.62 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.8
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|.-+.|+||+|+|||++++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457789999999999999999998865
No 128
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.34 E-value=0.0094 Score=57.41 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=23.7
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.-+..|..+.|+||+|+|||++++.++...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3446678999999999999999999888754
No 129
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.33 E-value=0.0086 Score=56.32 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.6
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|..+.|+||+|||||++++.+...+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457789999999999999999888765
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.33 E-value=0.0095 Score=54.82 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=21.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++|+||||||||++++.++..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 369999999999999999998876
No 131
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.33 E-value=0.0092 Score=56.90 Aligned_cols=26 Identities=19% Similarity=0.511 Sum_probs=23.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|+.+.|+||+|+|||++++.++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 57889999999999999999998765
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.29 E-value=0.0069 Score=56.30 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+|+||||||++++.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998876
No 133
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.23 E-value=0.02 Score=54.25 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=33.3
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
..|.-++|+||+|+|||+++..++. . . ...++.+......++..+...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~-~-~--~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL-L-S--GKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH-H-H--CSEEEEEESSCCCCHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH-H-c--CCcEEEEECCCCCCHHHHHHH
Confidence 3567889999999999999999887 2 1 334555655444455555543
No 134
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.22 E-value=0.01 Score=56.03 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 400 ~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
......+.-+.|+||+|||||++++.++..+.
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445677899999999999999999988763
No 135
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.20 E-value=0.011 Score=55.22 Aligned_cols=25 Identities=20% Similarity=0.662 Sum_probs=21.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++.+.|+||+|+|||++++.++..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999988765
No 136
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.16 E-value=0.011 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+||+|||||++++.+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999988765
No 137
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.14 E-value=0.0083 Score=55.54 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=22.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|..+.|+|++|||||++++.+.+.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998765
No 138
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.12 E-value=0.011 Score=55.57 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=23.2
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|.-+.|+||+||||||+++.++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 457788999999999999999887754
No 139
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.12 E-value=0.012 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+..++|+|++|||||++++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999998886
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.09 E-value=0.031 Score=53.76 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+.|+||+|+|||++++.++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 445778999999999999999999874
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.05 E-value=0.011 Score=54.31 Aligned_cols=25 Identities=36% Similarity=0.659 Sum_probs=21.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+||+|||||++++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999887754
No 142
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.03 E-value=0.016 Score=59.72 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 396 GSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 396 ~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...++..+..|..+.++||+|||||++++.++.-+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567778899999999999999999999988765
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.01 E-value=0.012 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|+|+|++|||||++++.+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999988865
No 144
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.98 E-value=0.013 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=22.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+++.|+|++|||||++++.+.+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998876
No 145
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.96 E-value=0.014 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..++|+|+||||||++++.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999998876
No 146
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.96 E-value=0.013 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.778 Sum_probs=20.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.|+||+|+|||++++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999887654
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.95 E-value=0.01 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-++|+||||||||++++.++..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998865
No 148
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.92 E-value=0.016 Score=53.68 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=21.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|+|+|+||||||++++.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999998876
No 149
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.91 E-value=0.014 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-|.|+|++|||||++++.+.+.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998876
No 150
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.86 E-value=0.013 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=21.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++++||+|||||++++.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999876
No 151
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.85 E-value=0.015 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=22.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.-+.|+||+||||||+++.+++.+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998765
No 152
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.83 E-value=0.015 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
....++|+||+|||||++++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998876
No 153
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.82 E-value=0.015 Score=56.22 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=23.8
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.....|..+.|+||+|+|||++++.++...
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 345678899999999999999999988765
No 154
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.79 E-value=0.021 Score=59.45 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.....+..++++||+||||||+++.++..+
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345556689999999999999999988765
No 155
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.78 E-value=0.016 Score=55.08 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=23.5
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+..|.-+-|+||+|+|||++++.++.-+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46678899999999999999999887754
No 156
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.78 E-value=0.019 Score=53.30 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+.|+|++|||||++++.+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998876
No 157
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.76 E-value=0.014 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+.-|.|+|++|||||++++.+.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999988773
No 158
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.76 E-value=0.078 Score=58.22 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=70.0
Q ss_pred CceEEEccCCCcHHHHHHHHHH----hhcccCCc-eEEEEEeccCC--ChHHHHHHHHhhhhhhcC-----cc-------
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN----KLLASNTW-AALTINFSAQT--SSARTQEILEGKLDKRTK-----TL------- 467 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~----~l~~~~~~-~~~~i~fS~~T--t~~~lq~~ie~~l~~~~~-----~~------- 467 (583)
.-|.++|+.|+|||++++.+.+ .. ...+ ..+.++.|... +...+++.|-..+..... ..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~--~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLI--GINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTB--TTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHH--hccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 4578999999999999999986 23 2223 23445666543 345555444444432110 00
Q ss_pred ----cc-CCCCC-eEEEEecCCCCCCcccCCCCChHHHHHHHHHhCCeeecCCCeeEeecCeEEEEecCCCCCCCCCCCh
Q psy17974 468 ----LG-APLGK-RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTP 541 (583)
Q Consensus 468 ----~~-p~~gk-~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~g~yd~~~~~~~~i~~i~~iaa~~p~~~gr~~l~~ 541 (583)
+. --.++ ++++++||+.-.. . + .|... .+..+|.|+.... +..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~~~----------~-~-~~~~~--------------~gs~ilvTTR~~~-----v~~ 279 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQEE----------T-I-RWAQE--------------LRLRCLVTTRDVE-----ISN 279 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECCHH----------H-H-HHHHH--------------TTCEEEEEESBGG-----GGG
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCch----------h-h-ccccc--------------CCCEEEEEcCCHH-----HHH
Confidence 00 01354 8899999986521 1 1 22211 2445666654321 111
Q ss_pred hhhccceEEEeCCCCHHHHHHHHHHH
Q psy17974 542 RFVRHFGLLSLPSPTEDTLKVIFKVR 567 (583)
Q Consensus 542 Rllr~f~vi~i~~p~~~sl~~I~~~~ 567 (583)
..-..-.++.++..+.++-..+|...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 11001146888888888888887776
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|+|+|+||||||++++.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999988765
No 160
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.72 E-value=0.017 Score=54.36 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++|+|+||||||++++.+.+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998876
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.72 E-value=0.018 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++|+|++|||||++++.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 162
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.71 E-value=0.016 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|+||||||||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999988866
No 163
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.69 E-value=0.016 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=20.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|+||||||||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999988865
No 164
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.67 E-value=0.017 Score=55.65 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
....++|+|++|||||++++.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998866
No 165
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.66 E-value=0.021 Score=54.07 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=49.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc--Cc------cccCCCCCeEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT--KT------LLGAPLGKRLA 477 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~--~~------~~~p~~gk~~v 477 (583)
|+=.+++||.|+|||+.+-..+.+.. ..+..+..+.++..+.... ..+.+++.-.. .. .+....++.-+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~r~~~--~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dv 84 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDNRYSK--EDVVSHMGEKEQAVAIKNSREILKYFEEDTEV 84 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC---------CEEECTTSCEEECEEESSSTHHHHHCCTTCSE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCccchH--HHHHhhcCCceeeEeeCCHHHHHHHHhccCCE
Confidence 45678999999999998887777652 3455666666554332110 01111110000 00 00001123458
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHh
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDF 506 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~ 506 (583)
|+|||.+.-.++ .+++|+.+.+.
T Consensus 85 ViIDEaqfl~~~------~v~~l~~l~~~ 107 (191)
T 1xx6_A 85 IAIDEVQFFDDE------IVEIVNKIAES 107 (191)
T ss_dssp EEECSGGGSCTH------HHHHHHHHHHT
T ss_pred EEEECCCCCCHH------HHHHHHHHHhC
Confidence 999998875443 48899988775
No 166
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.65 E-value=0.013 Score=54.64 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+.|+||+|+|||++++.++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 457899999999999999998643
No 167
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.61 E-value=0.025 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|.|||||||+|.++.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 168
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.59 E-value=0.034 Score=62.43 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+...+..+...|+.||||||||+++-.++..+
T Consensus 198 V~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 198 VLFALSQKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44455555678999999999999877766554
No 169
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.58 E-value=0.015 Score=57.91 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.++||+|||||++++.++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 6778899999999999999999887755
No 170
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.58 E-value=0.01 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
.|.-+.|+||+|||||++++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 46678999999999999999643
No 171
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.57 E-value=0.019 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+.|+|++|||||++++.+.+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46679999999999999999998865
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.55 E-value=0.037 Score=52.67 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+|||++++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4467789999999999999999997643
No 173
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.52 E-value=0.019 Score=54.15 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+|++|||||++++.+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998876
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.52 E-value=0.015 Score=56.23 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
+..|.-+.|+||+|+|||++++.++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 5578899999999999999999887
No 175
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.52 E-value=0.054 Score=52.74 Aligned_cols=31 Identities=35% Similarity=0.445 Sum_probs=24.0
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+++ +.+++++||+|+|||.++..++...
T Consensus 102 i~~~~~-~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 102 LERWLV-DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHTT-TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHh-CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 344444 4569999999999999988777754
No 176
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.50 E-value=0.034 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+||||||||++++.+.+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998865
No 177
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.49 E-value=0.02 Score=54.13 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=23.6
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+..+.|+|++|||||++++.+.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346679999999999999999998876
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.48 E-value=0.02 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+||+||||||+++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999888765
No 179
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.46 E-value=0.02 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.|+|++||||||+++.+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999998876
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.45 E-value=0.02 Score=54.54 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-++|+||+|+|||++++.++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3457789999999999999999988654
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.44 E-value=0.02 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.|+|++|||||++++.+.+.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999988866
No 182
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.43 E-value=0.016 Score=53.36 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=18.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+|++|||||++++.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568999999999999999998876
No 183
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.42 E-value=0.041 Score=51.07 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=25.0
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
+.|.|++||||||+++.+.+.+. ..++.++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~-~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH-HCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEeeC
Confidence 68999999999999999888763 23455554443
No 184
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.048 Score=67.18 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=28.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
.|+++|++||||||||+++++++.+-. ..+-..++|.+-.
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~-~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEH 1120 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEECTTS
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhh-hcCCceeEEEccc
Confidence 356699999999999999999987532 1233455666533
No 185
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.35 E-value=0.024 Score=54.26 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..++|+|+||||||++++.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.35 E-value=0.029 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|..+.|+|++|||||++++.+...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999888765
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.35 E-value=0.054 Score=55.34 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=35.2
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccC-----CceEEEEEeccCCChHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASN-----TWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~-----~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
+..|.-++++||||+|||+++.+++....... +..++++.+-...++..+....
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999999999887542221 2345555544333466555443
No 188
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.34 E-value=0.028 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+-++|.|||||||+|.++.+++.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457889999999999999998876
No 189
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.29 E-value=0.037 Score=51.51 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=27.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
.-+.++|++|+|||++++.++..+. ...+.+..+....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc-ccCCceeEEeeCC
Confidence 4578999999999999999988763 3344555555543
No 190
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.23 E-value=0.058 Score=51.92 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=48.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhc--------CccccCCCCCeEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT--------KTLLGAPLGKRLA 477 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~--------~~~~~p~~gk~~v 477 (583)
|+=.+++||.|+|||+.+-..+.+.. ..+..+..+.+...+.... ..+.+++.-.. ...+.-..++.-+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~d~R~ge--~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dv 104 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCIDNRYSE--EDVVSHNGLKVKAVPVSASKDIFKHITEEMDV 104 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC-------------------CCEEECSSGGGGGGGCCSSCCE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCCcchH--HHHHhhcCCeeEEeecCCHHHHHHHHhcCCCE
Confidence 44457899999999998777766552 3455666666655432211 11222221000 0111111223458
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
|+|||++.-..+ .+++|+.+.+.|
T Consensus 105 ViIDEaQF~~~~------~V~~l~~l~~~~ 128 (214)
T 2j9r_A 105 IAIDEVQFFDGD------IVEVVQVLANRG 128 (214)
T ss_dssp EEECCGGGSCTT------HHHHHHHHHHTT
T ss_pred EEEECcccCCHH------HHHHHHHHhhCC
Confidence 999999985544 468999887753
No 191
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.21 E-value=0.024 Score=53.23 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=21.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.|+|++|||||++++.+++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998865
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.028 Score=54.16 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=32.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+..|.-++++||||+|||+++.+++..... .+..++.+. ...++.++.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~--~e~~~~~~~~ 68 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVA--LEEHPVQVRQ 68 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEE--SSSCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE--ccCCHHHHHH
Confidence 456788999999999999998888765422 233444443 3344444443
No 193
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.19 E-value=0.025 Score=54.71 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..++|+|++|||||++++.+.+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998876
No 194
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.15 E-value=0.015 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++|+|+||||||++++.+...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999998876
No 195
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.14 E-value=0.027 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.|+|++|||||++++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988866
No 196
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.08 E-value=0.04 Score=51.09 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=28.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
-+.++|++|||||+++..++..+. ..++.+..+....
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV-REGWRVGTVKHHG 42 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCC
Confidence 468999999999999999998773 3455666665433
No 197
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.06 E-value=0.025 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|+|+||||||++++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998866
No 198
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.06 E-value=0.029 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=23.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+|++|||||++++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999998866
No 199
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.06 E-value=0.034 Score=59.82 Aligned_cols=37 Identities=22% Similarity=0.457 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 393 ~r~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+|....+..+. .|+.++|+||+|+|||++++.++...
T Consensus 139 ir~ID~L~pi~-kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 139 IKVVDLLAPYI-KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CHHHHHHSCEE-TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred chHHHHHhhhc-cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444443333 36789999999999999999887754
No 200
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.05 E-value=0.028 Score=52.01 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=24.5
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.+.|+|++|||||++++.+.+.+. ..++.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~-~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK-QKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 478999999999999999988762 224444433
No 201
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.02 E-value=0.023 Score=59.49 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|..++++||+|||||++++.++..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5677889999999999999999988765
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.00 E-value=0.025 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.568 Sum_probs=21.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..-++|+|+||||||++++.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998865
No 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.96 E-value=0.15 Score=60.07 Aligned_cols=51 Identities=25% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh--hcccCCceEEEEEeccCCChHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK--LLASNTWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~--l~~~~~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
.+-|.++|+.|+|||++++.+.+. ...........++.+...+...+...+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 356899999999999999988753 111111234566777665655544433
No 204
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.94 E-value=0.024 Score=51.92 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||.|+|||++++.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3567789999999999999999998866
No 205
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.90 E-value=0.047 Score=57.28 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=25.6
Q ss_pred HHHHHH--hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 398 IMEKLL--LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 398 ll~~~l--~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++.++ ..|+.++++||+|+|||++++.+++..
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344443 357899999999999999999877643
No 206
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.90 E-value=0.05 Score=57.84 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.8
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
..+.-++++||+||||||+++.++..+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3455789999999999999999988763
No 207
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.90 E-value=0.024 Score=53.83 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-+-|+||+||||||+++.+...+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999887765
No 208
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.90 E-value=0.021 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.7
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+.++|++||||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998876
No 209
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.87 E-value=0.049 Score=52.41 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=31.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
.|.-++++|+||+|||+++.+++.+.....+..+.. +|...++.++.+.+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~--~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVF--VTLEERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEE--EESSSCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcee--ecccCCHHHHHHHH
Confidence 467799999999999999988764321111223333 45556666655443
No 210
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.83 E-value=0.031 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++|+|++|||||++++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 211
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.83 E-value=0.082 Score=58.20 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+-|.++||+|+|||+++..+++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHhc
Confidence 457899999999999999988753
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.031 Score=53.18 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=24.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+..+.|+|++|||||++++.+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567788999999999999999988766
No 213
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.79 E-value=0.04 Score=55.27 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+..|.-+.|+||||+|||++++.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35678889999999999999999987765
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.75 E-value=0.031 Score=56.94 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..-+..|.-+.|+||+|+|||++++.++.-+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34456778899999999999999999887654
No 215
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.73 E-value=0.018 Score=55.50 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=18.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHH-Hhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSIL-NKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l-~~l 430 (583)
+..|.-+.|+||+|||||++++.++ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4457788999999999999999888 543
No 216
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.72 E-value=0.028 Score=55.27 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=24.7
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+...+..+-|+||+|||||++++.+++.+
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 33556789999999999999999998766
No 217
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.69 E-value=0.041 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
|..+.|+||+|+|||++++.++..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4568999999999999999887654
No 218
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.67 E-value=0.14 Score=53.29 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=28.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.|.-++++||||+|||+++.+++.... ..+..+.++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~-~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ-KAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 567799999999999999998876542 223345555443
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.57 E-value=0.027 Score=53.67 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++.|+++||||+|||+++..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 36789999999999999999998764
No 220
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.55 E-value=0.053 Score=55.60 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++|+||+|||||++++.+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 221
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.49 E-value=0.048 Score=52.19 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+++. +..|.-+.|+||+|+|||++++.++.-
T Consensus 14 ~~l~~-i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDA-IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH-HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHh-ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444 478889999999999999999987653
No 222
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.48 E-value=0.039 Score=49.25 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999874
No 223
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.45 E-value=0.04 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998864
No 224
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.38 E-value=0.04 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 225
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.36 E-value=0.042 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 226
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.34 E-value=0.041 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.|+|++|||||++++.+.. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 588999999999999998887 5
No 227
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.33 E-value=0.03 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.-+.++|++|||||++++.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4568899999999999999887754
No 228
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.30 E-value=0.038 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+-|+||+||||||+++.+...+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999887755
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.30 E-value=0.061 Score=55.80 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=25.2
Q ss_pred HHHHHhcCCc--eEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHP--VMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~--vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+...+..|.. ++|+||+|+|||++++.++..+
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444556655 9999999999999999887765
No 230
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.28 E-value=0.038 Score=57.96 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+..++|+||+|||||++++.++...
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5567889999999999999999988764
No 231
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.25 E-value=0.031 Score=54.53 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+-|+||+||||||+++.++.-+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4467889999999999999999876544
No 232
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.25 E-value=0.043 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 233
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.23 E-value=0.035 Score=57.27 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=22.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.++|+||+|||||+++..+++.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999876
No 234
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.20 E-value=0.044 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999875
No 235
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.17 E-value=0.045 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 236
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.17 E-value=0.033 Score=54.45 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=23.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+||||||+++.++.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568889999999999999999887644
No 237
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.14 E-value=0.045 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.12 E-value=0.12 Score=53.39 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=33.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc-----CCceEEEEEeccCCChHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS-----NTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~-----~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
.|.-++++||||+|||+++.+++.....+ ....++++......++..+...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 45678999999999999999988753111 1334555554433346655544
No 239
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.10 E-value=0.047 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998864
No 240
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.08 E-value=0.1 Score=49.18 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=26.0
Q ss_pred HHHHHHHHh----cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 396 GSIMEKLLL----VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 396 ~~ll~~~l~----~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.+.+.+ .+.-+.|+||+|||||++++.+...+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555554 23458999999999999999887765
No 241
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.06 E-value=0.081 Score=51.29 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=27.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i 441 (583)
.|.-+.+.||+|||||++++.+...+. . .+.++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCceee
Confidence 466789999999999999999998874 2 4445443
No 242
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.05 E-value=0.044 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=20.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++.|+||+|+||||+++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987654
No 243
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.05 E-value=0.045 Score=51.57 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=18.7
Q ss_pred ceEEEccCCCcHHHHHHHHHH
Q psy17974 408 PVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.+.|+||+|||||++++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.99 E-value=0.034 Score=53.79 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567889999999999999999876543
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.98 E-value=0.037 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999863
No 246
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.98 E-value=0.051 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 247
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.97 E-value=0.071 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=20.9
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHH
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
.+..|+.++++||+|||||+++...+
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 34568899999999999998766543
No 248
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.96 E-value=0.052 Score=50.65 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.++|++|+|||++++.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998874
No 249
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.96 E-value=0.051 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.|+|++|+|||++++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999988753
No 250
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.94 E-value=0.052 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 251
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.93 E-value=0.053 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.91 E-value=0.04 Score=53.06 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568889999999999999999877644
No 253
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.88 E-value=0.058 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+.+.||+|||||++++.+...+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998876
No 254
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.84 E-value=0.052 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
-++|+|+||||||++++.+...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4799999999999999998874
No 255
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.81 E-value=0.058 Score=50.91 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...|+++|++|+|||++++.+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998753
No 256
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.80 E-value=0.048 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|.|+|++|||||++++.+.+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 345899999999999999988763
No 257
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.80 E-value=0.055 Score=48.67 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 36899999999999999988753
No 258
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.80 E-value=0.051 Score=50.62 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+.||++|++|+|||+++..++..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4789999999999999999998874
No 259
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.79 E-value=0.059 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998764
No 260
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.78 E-value=0.12 Score=52.32 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~ 445 (583)
.+.-++++||+|+|||+++..++..+....+..+..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46688999999999999999988766322344555555443
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.064 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998874
No 262
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.73 E-value=0.059 Score=48.07 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 263
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.72 E-value=0.096 Score=53.40 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=31.5
Q ss_pred chhhhHHHHHHHHHhc----------------CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 390 IDTIRFGSIMEKLLLV----------------NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 390 ~dt~r~~~ll~~~l~~----------------~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.+....+..++.. |+.|++.|++|+|||+++..++..
T Consensus 112 ~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 112 IATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp SCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3355555556666665 889999999999999999999874
No 264
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.72 E-value=0.057 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....|+++|++|+|||++++.+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 265
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.71 E-value=0.058 Score=48.69 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.++|++|+|||++++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998763
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.69 E-value=0.041 Score=53.41 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=24.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568889999999999999999887654
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.66 E-value=0.046 Score=54.35 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=24.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-++|+||+|+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578899999999999999999987654
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.61 E-value=0.14 Score=52.01 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=34.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ 455 (583)
+..|.-+++.|+||+|||+++.+++...... +.. .+-||...++.++..-
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~--vl~~slE~s~~~l~~R 114 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDV--VNLHSLEMGKKENIKR 114 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCE--EEEEESSSCHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCe--EEEEECCCCHHHHHHH
Confidence 4457789999999999999999887654222 223 3446666777665543
No 269
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.60 E-value=0.061 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 270
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.60 E-value=0.044 Score=54.37 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=23.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4568899999999999999999887643
No 271
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.58 E-value=0.096 Score=54.43 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=30.2
Q ss_pred HHHHHh-----cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 399 MEKLLL-----VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 399 l~~~l~-----~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
++.++. .|.-++|+||||||||+++.+++..... ....++++..
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~ 97 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDA 97 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 455555 3567899999999999999998876532 2233444443
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.57 E-value=0.055 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++++||+|||||+++..+++.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 457899999999999999999876
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.57 E-value=0.044 Score=53.93 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568889999999999999999876643
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.57 E-value=0.052 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.8
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|.++|++|+|||++++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998876
No 275
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.56 E-value=0.14 Score=52.89 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=28.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.|.-++++||||+|||+++.+++.... ..+..+.++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEECC
Confidence 567899999999999999998876542 223345555543
No 276
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.56 E-value=0.071 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 277
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.55 E-value=0.052 Score=53.44 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=23.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+.|+||+|+||||+++.++.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456788999999999999999988763
No 278
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.55 E-value=0.061 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999874
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.53 E-value=0.044 Score=54.18 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567889999999999999999886543
No 280
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.53 E-value=0.062 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 281
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.52 E-value=0.064 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998753
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.50 E-value=0.053 Score=53.94 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=23.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+.|+||+|+||||+++.++.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456788999999999999999988763
No 283
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.47 E-value=0.066 Score=47.95 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.0
Q ss_pred ceEEEccCCCcHHHHHHHHHH
Q psy17974 408 PVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.|+++|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998864
No 284
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.46 E-value=0.065 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.++++||+|||||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 47889999999999999999876
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.45 E-value=0.056 Score=49.33 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+..|.++|++|+|||++++.+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557899999999999999998764
No 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.45 E-value=0.047 Score=54.22 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=23.4
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+-|+||+|+||||+++.++.-+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567788999999999999999876543
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.44 E-value=0.1 Score=50.00 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=29.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
.|.-+.+.|++|+|||+.++.+.+.+. ..++.++.....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~~~p 43 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLTREP 43 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEESS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccccCC
Confidence 466788999999999999999988773 345666555554
No 288
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.44 E-value=0.11 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=21.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.++|++|+|||+++..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 289
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.43 E-value=0.067 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 290
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.43 E-value=0.067 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 291
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.39 E-value=0.064 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 292
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.38 E-value=0.064 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....|+++|++|+|||++++.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999998864
No 293
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.37 E-value=0.064 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998864
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.35 E-value=0.042 Score=53.85 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+.|+||+|+||||+++.++.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456788999999999999999987654
No 295
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.34 E-value=0.049 Score=53.29 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4467889999999999999999887643
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.34 E-value=0.064 Score=47.87 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.5
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|+++|++|+|||++++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999998764
No 297
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.32 E-value=0.1 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+.-+.++||+||||||+++.++.-+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 5678999999999999999887655
No 298
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.31 E-value=0.048 Score=54.62 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+|+||||+++.++.-
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 456788999999999999999987653
No 299
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.31 E-value=0.07 Score=48.64 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 300
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.29 E-value=0.15 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+++.||||||||+++..++..+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999988877655
No 301
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.28 E-value=0.071 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 302
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.071 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|.++||+|||||++++.++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 358999999999999999999876
No 303
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.25 E-value=0.05 Score=53.61 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567889999999999999999876543
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.25 E-value=0.074 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.24 E-value=0.051 Score=54.21 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5568889999999999999999876643
No 306
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.22 E-value=0.066 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+++|++|+|||++++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998864
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.21 E-value=0.051 Score=54.10 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+-|+||+|+||||+++.++.-+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4568889999999999999999886543
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.20 E-value=0.073 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.++|++|+|||++++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998863
No 309
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.19 E-value=0.073 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998874
No 310
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.18 E-value=0.072 Score=48.52 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.18 E-value=0.15 Score=52.69 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=24.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|||||++++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467789999999999999999988764
No 312
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.17 E-value=0.075 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999998864
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.15 E-value=0.072 Score=48.98 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-.+|+||+|+|||++++++.--+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999886644
No 314
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.14 E-value=0.076 Score=48.05 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 315
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.14 E-value=0.054 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+-|+||+|+||||+++.++.-+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4567889999999999999999876543
No 316
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.13 E-value=0.076 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999864
No 317
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.12 E-value=0.059 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-+.|+||+|+||||+++.++..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999887765
No 318
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.06 E-value=0.064 Score=56.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..-|+|+|+||||||++++.++..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999999988765
No 319
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.03 E-value=0.17 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.4
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.-++++||||+|||+++.+++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34667899999999999999998764
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.01 E-value=0.055 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=23.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567889999999999999999887644
No 321
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.00 E-value=0.057 Score=53.43 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=23.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567889999999999999999876543
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.98 E-value=0.072 Score=51.90 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=22.7
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+..+.-+-|+||+||||||+++.+...+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34556668999999999999999887654
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.97 E-value=0.072 Score=49.38 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
+-+.++||+|||||++++.++.-+. +..+..-.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEc
Confidence 3578999999999999999888663 333333344443
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.96 E-value=0.086 Score=49.30 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.|.|++|||||++++.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999988866
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.94 E-value=0.085 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-|.|+|++|||||++++.+...+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999888766
No 326
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.92 E-value=0.079 Score=49.19 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.92 E-value=0.059 Score=53.57 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+.|+||+|+||||+++.++.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456788999999999999999987653
No 328
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.90 E-value=0.084 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 329
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.89 E-value=0.076 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988753
No 330
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.88 E-value=0.059 Score=54.07 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||+|+||||+++.++.-+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4567889999999999999999876543
No 331
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.87 E-value=0.097 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998864
No 332
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.87 E-value=0.082 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 333
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.86 E-value=0.084 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999998864
No 334
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.85 E-value=0.21 Score=52.65 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=22.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+..|.-+.|+||+|||||+++..++-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 44567899999999999999998753
No 335
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.83 E-value=0.036 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..+..|.|+|++|+|||++++.++.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999987754
No 336
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.82 E-value=0.077 Score=50.44 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+.-+.|+|++|||||++++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998865
No 337
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.80 E-value=0.086 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998864
No 338
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.79 E-value=0.056 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
....|+++|++|+|||++++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999988764
No 339
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.75 E-value=0.17 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-..+.++|++|+|||++++.++..+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 340
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.70 E-value=0.087 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 341
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.70 E-value=0.22 Score=51.74 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=28.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
.+.-++++||||+|||+++.+++.... ..+..+.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~-~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeC
Confidence 567899999999999999999876542 22334555554
No 342
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.68 E-value=0.095 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999988874
No 343
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.67 E-value=0.12 Score=54.72 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 395 FGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 395 ~~~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....++.....+..+-|+||+|+||||+++.++.-
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 33445555555558999999999999999988764
No 344
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.65 E-value=0.092 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 47899999999999999999875
No 345
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.61 E-value=0.092 Score=47.71 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999853
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.60 E-value=0.075 Score=55.29 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcC
Confidence 446778899999999999999988753
No 347
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.59 E-value=0.11 Score=56.03 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
++.-+..|.-+.|+||+|||||++++.++.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45557788999999999999999999887643
No 348
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.59 E-value=0.13 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....|+++|++|+|||++++.+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998853
No 349
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.095 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999874
No 350
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.58 E-value=0.098 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 47999999999999999998864
No 351
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.55 E-value=0.096 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999864
No 352
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.55 E-value=0.096 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 353
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.48 E-value=0.098 Score=48.25 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998864
No 354
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.48 E-value=0.17 Score=53.08 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHH--hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 397 SIMEKLL--LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 397 ~ll~~~l--~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..++.++ ..|+..+++|++|+|||+++..+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 3345553 347899999999999999998887643
No 355
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.47 E-value=0.093 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 356
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.46 E-value=0.098 Score=48.66 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999999874
No 357
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.46 E-value=0.1 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=20.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998863
No 358
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.44 E-value=0.094 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+-|+||+|+||||+++.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999887643
No 359
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.40 E-value=0.13 Score=52.28 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=25.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEE
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~ 442 (583)
+.-++++||+|+|||+++..++..+. +.+..+..+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEc
Confidence 45679999999999999999887663 2333444443
No 360
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.39 E-value=0.097 Score=48.84 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 361
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.39 E-value=0.21 Score=53.33 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=29.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.-++++|++|+|||+++..++..+. ..+..+..+.+-..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTW 139 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCS
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCc
Confidence 4679999999999999999987763 34566666655443
No 362
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.38 E-value=0.1 Score=48.57 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 358999999999999999998864
No 363
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.38 E-value=0.098 Score=48.22 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999864
No 364
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.36 E-value=0.082 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998874
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.31 E-value=0.084 Score=54.84 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.2
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456788999999999999999988753
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.31 E-value=0.16 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.3
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.-+-|+||+||||||+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445568899999999999999887755
No 367
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.30 E-value=0.057 Score=54.92 Aligned_cols=28 Identities=18% Similarity=0.456 Sum_probs=24.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+-|+||+|+|||++++.++.-+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4578899999999999999999877643
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.29 E-value=0.18 Score=63.10 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=33.7
Q ss_pred HHhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 402 LLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 402 ~l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.+..+.+++++||||||||+++.+++.+-. +.+..+.++++...
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~-k~Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHA 1120 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSC
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEcccc
Confidence 455789999999999999999999876542 33566777766553
No 369
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.28 E-value=0.077 Score=48.54 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....|+++|++|+|||++++.+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998753
No 370
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.28 E-value=0.32 Score=57.90 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+-|.|+|+.|+|||++++.+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcC
Confidence 45789999999999999988764
No 371
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.26 E-value=0.074 Score=53.67 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-+.|+||.|+|||++++.++.-+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4467889999999999999999887644
No 372
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.23 E-value=0.11 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999874
No 373
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.22 E-value=0.074 Score=52.86 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+. |.-+.|+||+|+||||+++.++.-+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 7889999999999999999876543
No 374
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.20 E-value=0.17 Score=52.38 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=26.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
.|.++|+||+|||+++.+++..+. ..+..+..+....+
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~-~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLI-ERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hCCCceEEEecCCC
Confidence 689999999999999999987653 23445555555443
No 375
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.20 E-value=0.12 Score=49.99 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+.|+|++|||||++++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999988766
No 376
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.19 E-value=0.077 Score=56.45 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=25.6
Q ss_pred HHHHHHhcCCc--eEEEccCCCcHHHHHHHHHHh
Q psy17974 398 IMEKLLLVNHP--VMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 398 ll~~~l~~~~~--vLL~Gp~GtGKT~li~~~l~~ 429 (583)
-++.-+..|.. +.|+||+|+||||+++.++..
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34556777887 999999999999999988753
No 377
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.19 E-value=0.089 Score=48.07 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998864
No 378
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.18 E-value=0.15 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.|+|++|||||++++.+.+.+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357899999999999999888754
No 379
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.17 E-value=0.12 Score=57.68 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+++.||||||||+++..++..+
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998887655
No 380
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.16 E-value=0.11 Score=48.68 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 381
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.15 E-value=0.19 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+||+|+||||+++.++..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999887755
No 382
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.15 E-value=0.14 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998864
No 383
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.14 E-value=0.091 Score=54.74 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 346778899999999999999988753
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.14 E-value=0.091 Score=54.66 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=22.8
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 446778899999999999999988753
No 385
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.10 E-value=0.092 Score=55.05 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=23.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 446778899999999999999988753
No 386
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.07 E-value=0.11 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 357999999999999999999874
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.05 E-value=0.1 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+|+|++|+|||++++.++..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999999864
No 388
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.01 E-value=0.23 Score=52.92 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=34.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+..|.-++++|+||+|||+++.+++.......+..+. -||...++.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl--~~slE~~~~~l~~ 246 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVG--IYSLEMPAAQLTL 246 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEE--EEESSSCHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE--EEECCCCHHHHHH
Confidence 4456778999999999999999887755322233343 3566667666553
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.00 E-value=0.12 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=19.9
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-|.++||+|||||++++.+...+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999887765
No 390
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.96 E-value=0.095 Score=53.39 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.1
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..|.-+-|+||+||||||+++.+..-+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345568899999999999999887655
No 391
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.93 E-value=0.094 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+||+|+||||+++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45678999999999999999887765
No 392
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.92 E-value=0.11 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999988753
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.92 E-value=0.12 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999998864
No 394
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.91 E-value=0.12 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999998864
No 395
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.90 E-value=0.11 Score=48.48 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 47999999999999999998753
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.90 E-value=0.099 Score=54.67 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|.||+||||||+++.++.-
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 446778899999999999999988753
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.87 E-value=0.098 Score=54.69 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 446778899999999999999988753
No 398
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.86 E-value=0.13 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|+++|++|+|||++++.+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999875
No 399
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.86 E-value=0.097 Score=55.08 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+..|.-+-|+||+|||||++++.++.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhC
Confidence 55688999999999999999998875
No 400
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.85 E-value=0.19 Score=47.57 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=46.7
Q ss_pred cCCceEEEccCCCcHH-HHHHHHHHhhcccCCceEEEEEeccCCCh-----HHHHHHHHhhhhhhcCccccCCCCCeEEE
Q psy17974 405 VNHPVMFTGVTGVGKT-VVARSILNKLLASNTWAALTINFSAQTSS-----ARTQEILEGKLDKRTKTLLGAPLGKRLAV 478 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT-~li~~~l~~l~~~~~~~~~~i~fS~~Tt~-----~~lq~~ie~~l~~~~~~~~~p~~gk~~vl 478 (583)
.++=.+++||.|+||| .+++.+-+.. ..+..+..+.-.-.+.. +.+...++..........+. ....--+|
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~--~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~-~~~~~DvI 95 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQ-EALGVAVI 95 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHH-HHHTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHH-hccCCCEE
Confidence 3567799999999999 5666544332 22344555543222221 11110000000000000000 00112389
Q ss_pred EecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 479 FVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 479 fiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
+|||+..- ++ ..|+++.+.+.|
T Consensus 96 lIDEaQFf-k~------~ve~~~~L~~~g 117 (195)
T 1w4r_A 96 GIDEGQFF-PD------IVEFCEAMANAG 117 (195)
T ss_dssp EESSGGGC-TT------HHHHHHHHHHTT
T ss_pred EEEchhhh-HH------HHHHHHHHHHCC
Confidence 99999987 43 689999888754
No 401
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.85 E-value=0.079 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcC
Confidence 446778899999999999999988753
No 402
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.80 E-value=0.19 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.+++++||+|+|||++++.++..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887655
No 403
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.77 E-value=0.1 Score=54.15 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+||+||||||+++.++.-+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 7789999999999999999888755
No 404
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.74 E-value=0.13 Score=48.54 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 405
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.69 E-value=0.074 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=10.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988753
No 406
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.66 E-value=0.13 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999655544
No 407
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.65 E-value=0.14 Score=49.73 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=26.6
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhhccc---CCceEEEEEec
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKLLAS---NTWAALTINFS 444 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~---~~~~~~~i~fS 444 (583)
..|.-+.+.||+|+|||++++.+.+.+... .++.+....+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 357788999999999999999998877321 04455544443
No 408
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.61 E-value=0.15 Score=54.62 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ 453 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq 453 (583)
+..|.-+++.|+||+|||+++.+++.......+..+. -||...++.++.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl--~~s~E~s~~~l~ 248 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVA--IFSLEMSAQQLV 248 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEE--EEESSSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEE--EEECCCCHHHHH
Confidence 5567789999999999999999987765322233343 345555655544
No 409
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.60 E-value=0.13 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
....|+++|++|+|||++++.++..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999988753
No 410
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.57 E-value=0.16 Score=54.12 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
+.-++++||+|+|||+++..++..+. ..+..+..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecC
Confidence 34679999999999999999887663 345555555543
No 411
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.56 E-value=0.16 Score=48.01 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+.|+|++|||||++++.+...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568999999999999999888865
No 412
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.54 E-value=0.13 Score=47.45 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.8
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999874
No 413
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.51 E-value=0.22 Score=49.17 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcC---CceEEEccCCCcHHHHHHHHHHh
Q psy17974 393 IRFGSIMEKLLLVN---HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 393 ~r~~~ll~~~l~~~---~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+...++..+...+ ..|+++|++|+|||++++.++..
T Consensus 23 ~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34445666666543 37899999999999999999864
No 414
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.13 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999998864
No 415
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.50 E-value=0.47 Score=45.66 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=48.8
Q ss_pred hcCCceEEEccCCCcHHH-HHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhh--------cCccccCCCCC
Q psy17974 404 LVNHPVMFTGVTGVGKTV-VARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR--------TKTLLGAPLGK 474 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~-li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~--------~~~~~~p~~gk 474 (583)
..|.=.+++||-|+|||+ +++. +.+.. ..+..+..+++.-.+... ...+-++..-. ....+.--.++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~-~~r~~-~~g~kvli~kp~~D~R~~--~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~ 101 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRR-LRRGI-YAKQKVVVFKPAIDDRYH--KEKVVSHNGNAIEAINISKASEIMTHDLTN 101 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHH-HHHHH-HTTCCEEEEEEC-------------CBTTBCCEEEEESSGGGGGGSCCTT
T ss_pred CCceEEEEECCCCCCHHHHHHHH-HHHHH-HcCCceEEEEeccCCcch--hhhHHHhcCCceeeEEeCCHHHHHHHHhcC
Confidence 456667999999999999 4554 44332 234555556554433221 11222222110 01111111234
Q ss_pred eEEEEecCCCCCCcccCCCCChHHHHHHHHHhC
Q psy17974 475 RLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG 507 (583)
Q Consensus 475 ~~vlfiDDln~p~~d~yg~q~~lElLRq~ld~~ 507 (583)
.-+|+|||...-..+ .++.++.+.+.|
T Consensus 102 ~dvV~IDEaQFf~~~------~v~~l~~la~~g 128 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDE------IVSIVEKLSADG 128 (219)
T ss_dssp CSEEEECCGGGSCTH------HHHHHHHHHHTT
T ss_pred CCEEEEechhcCCHH------HHHHHHHHHHCC
Confidence 558999999886554 678888888643
No 416
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.48 E-value=0.14 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.2
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-.+++||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35899999999999999876544
No 417
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.48 E-value=0.13 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.++||+|||||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 357899999999999999998876
No 418
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.46 E-value=0.33 Score=59.90 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-++|.||||+|||+++.+++...
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHH
Confidence 56789999999999999999987765
No 419
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.45 E-value=0.11 Score=48.45 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=19.0
Q ss_pred CceEEEccCCCcHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l 427 (583)
..|+++|++|+|||++++.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999875
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.40 E-value=0.12 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
...|+++|++|+|||++++.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998864
No 421
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.37 E-value=0.3 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+++.||||||||+++..++..+
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988877655
No 422
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.36 E-value=0.12 Score=47.93 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.4
Q ss_pred CCceEEEccCCCcHHHHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
...|+++|++|+|||++++.+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998864
No 423
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.35 E-value=0.12 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.|+|++|+|||++++.+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998764
No 424
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.32 E-value=0.3 Score=46.76 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCc-eEEEEEe
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTW-AALTINF 443 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~-~~~~i~f 443 (583)
|.-+.+.|++|+|||+.++.+.+.+. ..++ .+.....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~re 40 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTRE 40 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeC
Confidence 56788999999999999999988774 3344 3443333
No 425
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.29 E-value=0.13 Score=47.52 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.7
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|+++|++|+|||++++.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998864
No 426
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.27 E-value=0.2 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.0
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|.|+|+||+|||++++.++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 467899999999999999998754
No 427
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=90.25 E-value=0.49 Score=44.71 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred hcCCceEEEccCCCcHHHH-HHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVV-ARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~l-i~~~l~~l 430 (583)
..++++++++|+|+|||.. +-.++..+
T Consensus 49 ~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 49 IEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999986 33445443
No 428
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.23 E-value=0.61 Score=45.32 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=49.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHHHhhhhhhcC--ccccCC-----CCCeEE
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK--TLLGAP-----LGKRLA 477 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~ie~~l~~~~~--~~~~p~-----~gk~~v 477 (583)
.|+=.+++||.|+|||+-+-..+.+. ...+..+..+.+...+... . .+-+++.-... .+.... .++.-+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~kvli~kp~~D~Ryg--~-~i~sr~G~~~~a~~i~~~~di~~~~~~~dv 93 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYAKDTRYS--S-SFCTHDRNTMEALPACLLRDVAQEALGVAV 93 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HTTTCCEEEEEETTCCCC--------------CEEEEESSGGGGHHHHTTCSE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEeecCCccch--H-HHHhhcCCeeEEEecCCHHHHHHHhccCCE
Confidence 35666889999999997655555443 2345667777776655432 1 12222211000 000000 023448
Q ss_pred EEecCCCCCCcccCCCCChHHHHHHHHHh
Q psy17974 478 VFVDDVNMPKLETYGAQPPIELLRQFLDF 506 (583)
Q Consensus 478 lfiDDln~p~~d~yg~q~~lElLRq~ld~ 506 (583)
|+|||++... + +.++++.+.+.
T Consensus 94 ViIDEaQF~~-~------v~el~~~l~~~ 115 (234)
T 2orv_A 94 IGIDEGQFFP-D------IVEFCEAMANA 115 (234)
T ss_dssp EEESSGGGCT-T------HHHHHHHHHHT
T ss_pred EEEEchhhhh-h------HHHHHHHHHhC
Confidence 9999999874 1 78888777664
No 429
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.22 E-value=0.17 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-+.|+||+|+||||+++.++...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 57889999999999999999888644
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.20 E-value=0.13 Score=47.70 Aligned_cols=24 Identities=17% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999976654
No 431
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.16 E-value=0.14 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 432
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.16 E-value=0.14 Score=55.33 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=22.0
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.|.-+.|+||+|+||||+++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35568999999999999999887655
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.11 E-value=0.15 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998864
No 434
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.09 E-value=0.11 Score=57.24 Aligned_cols=29 Identities=34% Similarity=0.657 Sum_probs=25.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
+..|..+.|+|++||||||+++.++..+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 55678899999999999999999988763
No 435
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.08 E-value=0.12 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998764
No 436
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.03 E-value=0.082 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+||||||+++.++.-
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 446778899999999999999988753
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.03 E-value=0.14 Score=51.07 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.8
Q ss_pred ceEEEccCCCcHHHHHHHHHH
Q psy17974 408 PVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.|.|+|++|||||++++.+..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998873
No 438
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.01 E-value=0.16 Score=47.44 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 47999999999999999998764
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.99 E-value=0.15 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999988753
No 440
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.98 E-value=0.26 Score=48.03 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=25.8
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCce
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWA 437 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~ 437 (583)
.+.-+.+.|++|+|||+.++.+...+. ...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ-QNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH-HTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCC
Confidence 467789999999999999999988773 33454
No 441
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.90 E-value=0.12 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999988754
No 442
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.89 E-value=0.15 Score=49.78 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.2
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+|+|.||+|||++++.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998864
No 443
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.88 E-value=0.15 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 458999999999999999988864
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.84 E-value=0.13 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.6
Q ss_pred HhcCCceEEEccCCCcHHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSI 426 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~ 426 (583)
+..|.-++|+||+|||||++++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 457889999999999999999985
No 445
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.79 E-value=0.088 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHH
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
....|+++|++|+|||++++.+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456899999999999999998754
No 446
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.78 E-value=0.14 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.3
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|.|+||+|+|||++++.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4669999999999999998764
No 447
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=89.72 E-value=0.17 Score=47.31 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.6
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.72 E-value=0.17 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.6
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+-|.||+||||||+++.+..-+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999876654
No 449
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.69 E-value=0.14 Score=52.86 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+..|.-+.|+||+|+|||++++.++...
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445678899999999999999999988865
No 450
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.65 E-value=0.15 Score=53.20 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.0
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+..|.-+-|+||+|+||||+++.+..-
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 456788999999999999999987653
No 451
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.60 E-value=0.19 Score=51.72 Aligned_cols=27 Identities=33% Similarity=0.325 Sum_probs=22.9
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.-+-|+||||+|||++++.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456678999999999999999987654
No 452
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.53 E-value=0.18 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 453
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.51 E-value=0.18 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.1
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+||+|+|||++++.++ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 36788999999999999999988 54
No 454
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.50 E-value=0.34 Score=49.47 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=19.8
Q ss_pred ceEEEccCCCcHHHHHHHHHHhh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
-+++.||||+|||+++-+++.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999988876654
No 455
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.49 E-value=1.2 Score=42.12 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=30.7
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
+-.|++.+++|.|||+.+-.++-..- ..++.+..+.|-..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKG 67 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCC
Confidence 56899999999999999987754331 34778888888663
No 456
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.49 E-value=0.5 Score=47.72 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=23.4
Q ss_pred HHHHHHhcCCceEEEccCCCcHHHHHHHHH
Q psy17974 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 398 ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l 427 (583)
.+..+++.++++++.+|+|+|||..+-..+
T Consensus 36 ~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~ 65 (367)
T 1hv8_A 36 VIPLFLNDEYNIVAQARTGSGKTASFAIPL 65 (367)
T ss_dssp HHHHHHHTCSEEEEECCSSSSHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEECCCCChHHHHHHHHH
Confidence 456666667899999999999998755433
No 457
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.49 E-value=0.16 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+|+|++|+|||++++.++..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999863
No 458
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.32 E-value=0.18 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.|+|+||+|||++++.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999998764
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.30 E-value=0.2 Score=47.39 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.5
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999998874
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.29 E-value=0.19 Score=47.91 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|+|+|++|+|||++++.+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998874
No 461
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.21 E-value=0.38 Score=46.65 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=28.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccC
Q psy17974 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQ 446 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~ 446 (583)
-++++|.+|+|||+++.+++..+. .+..+..+..-.+
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTG 52 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 568899999999999999987764 3555666665544
No 462
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.21 E-value=0.18 Score=53.83 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=27.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEec
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS 444 (583)
..++++|++|+|||+++.+++..+. ..++.+..+...
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~-~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ-KRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH-HHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecc
Confidence 4789999999999999999887663 224455555444
No 463
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.18 E-value=0.19 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.2
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998765
No 464
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.11 E-value=0.26 Score=45.98 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=22.0
Q ss_pred HHHHHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 399 l~~~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
+..++ .+++++++||+|+|||.++-..+.
T Consensus 42 i~~~~-~~~~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 42 AQPAL-EGKNIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp HHHHH-TTCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHh-cCCCEEEEcCCCCCHHHHHHHHHH
Confidence 33344 478999999999999998765544
No 465
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.08 E-value=0.29 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=20.3
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..+++.||||||||+++..++..+
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 5568999999999999887766544
No 466
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.03 E-value=0.27 Score=50.50 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+..+.++|++|+|||+++++++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999987654
No 467
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.02 E-value=0.25 Score=50.42 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=27.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEe
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~f 443 (583)
.++-++++||+|+|||+++.+++..+. ..+..+..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeC
Confidence 345789999999999999999887663 33444554444
No 468
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.01 E-value=0.25 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...|+|+|.||||||++++.+.+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999999998765
No 469
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.01 E-value=0.22 Score=47.78 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|+|+|.+|+|||++++.++..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5899999999999999998864
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.95 E-value=0.2 Score=48.51 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.5
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+.+.|++|||||++++.+.+.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 458899999999999999998876
No 471
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.92 E-value=0.18 Score=53.80 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+..|.-+.|+||+|||||++++.++...
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 445678899999999999999999888765
No 472
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.89 E-value=0.42 Score=49.22 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=35.9
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEIL 456 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~~i 456 (583)
+..|.=++|.|+||+|||+++.+++..... .+..+ +-||...++.++..-+
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~V--l~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGV--AVFSLEMSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEE--EEEESSSCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeE--EEEeCCCCHHHHHHHH
Confidence 445677999999999999999998776522 23333 3467777777765433
No 473
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.86 E-value=0.21 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.|+|++|+|||++++.+...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999998763
No 474
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.82 E-value=0.1 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.7
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|.-+.|+||+|+||||+++.++..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4789999999999999999987653
No 475
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.69 E-value=0.23 Score=50.13 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.3
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.+.-+.|+||+|+|||++++.++...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 47788999999999999999887643
No 476
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.69 E-value=0.48 Score=44.67 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.8
Q ss_pred eEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCC
Q psy17974 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS 448 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt 448 (583)
+.+.|+.||||||.++.+.+.+. ..++.++...+-..|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~-~~g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCCCc
Confidence 45789999999999998888773 4456676666654443
No 477
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.65 E-value=0.19 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.4
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.+|+++|++|+|||++++.++.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998653
No 478
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.61 E-value=0.094 Score=48.64 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=5.1
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|+++|++|+|||++++.++..
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999988764
No 479
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.47 E-value=0.23 Score=49.47 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred CceEEEccCCCcHHHHHHHHHHh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
..|.|+|+||+|||++++.+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998763
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.41 E-value=0.27 Score=47.30 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.2
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLL 431 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~ 431 (583)
.|.-+.+.|++|+|||+.++.+.+.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 477889999999999999999999884
No 481
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.37 E-value=0.19 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHH
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
|..||+.|++|+|||+++..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 77899999999999999988876
No 482
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.35 E-value=0.25 Score=54.65 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred HHHhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 401 ~~l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-+..|.-+-|+||+|+||||+++.++.-.
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 336678999999999999999999887654
No 483
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.35 E-value=0.48 Score=44.01 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=20.6
Q ss_pred HhcCCceEEEccCCCcHHHHH-HHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVA-RSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li-~~~l~~l 430 (583)
+..++++++++|+|+|||... ..++..+
T Consensus 35 ~~~~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 35 ALEGKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred HcCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 345789999999999999863 3344443
No 484
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.33 E-value=0.13 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.2
Q ss_pred CceEEEccCCCcHHHHHHHHHH
Q psy17974 407 HPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
..|+++|++|+|||++++.++.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999998554
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.26 E-value=0.14 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=17.7
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
.-|.|.||+|||||++++.+...+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999888765
No 486
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.24 E-value=0.12 Score=50.71 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.6
Q ss_pred hcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 404 ~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+.-|.+.|++|||||++++.+.+.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 445678999999999999999888766
No 487
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.19 E-value=0.29 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.4
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
...|++++|+||+|||++++.++..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~ 77 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG 77 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999998877654
No 488
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.14 E-value=0.13 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCceEEEccCCCcHHHHHHHHHHh
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
...|+++|++|+|||++++.++..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 489
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.09 E-value=0.21 Score=50.84 Aligned_cols=21 Identities=48% Similarity=0.790 Sum_probs=19.1
Q ss_pred eEEEccCCCcHHHHHHHHHHh
Q psy17974 409 VMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~ 429 (583)
++|+|+.|+||||+++.++..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEecCCCCHHHHHHHHHhh
Confidence 589999999999999999864
No 490
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.03 E-value=0.3 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.9
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHh
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.+.|+|+.|+||||||++++.++..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~s 190 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILS 190 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999988653
No 491
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.02 E-value=0.39 Score=48.42 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=29.0
Q ss_pred CCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCC
Q psy17974 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447 (583)
Q Consensus 406 ~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~T 447 (583)
+.-+.++|++|+|||+++.+++..+. ..+..+..+....+-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADVYR 138 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCCC
Confidence 44678899999999999999887663 334455556555443
No 492
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.95 E-value=0.34 Score=55.49 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCceEEEccCCCcHHHHHHHHHH
Q psy17974 397 SIMEKLLLVNHPVMFTGVTGVGKTVVARSILN 428 (583)
Q Consensus 397 ~ll~~~l~~~~~vLL~Gp~GtGKT~li~~~l~ 428 (583)
.-+...+..+..++++||+|||||+++..++.
T Consensus 100 ~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 100 DEFLKLYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 33455577788999999999999997776644
No 493
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=87.89 E-value=0.36 Score=53.63 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=26.5
Q ss_pred cCCceEEEccCCCcHHHHHHHHHHhhccc---CCceEEEEEecc
Q psy17974 405 VNHPVMFTGVTGVGKTVVARSILNKLLAS---NTWAALTINFSA 445 (583)
Q Consensus 405 ~~~~vLL~Gp~GtGKT~li~~~l~~l~~~---~~~~~~~i~fS~ 445 (583)
.+.|+++.|+||||||+++-..+..+-.. ....+..++|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~ 64 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTN 64 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccH
Confidence 46899999999999999876543322111 123455666654
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.86 E-value=0.21 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.4
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|.|+||+|+|||++++.++..
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4599999999999999998764
No 495
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.79 E-value=0.27 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.1
Q ss_pred eEEEccCCCcHHHHHHHHHHh
Q psy17974 409 VMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 409 vLL~Gp~GtGKT~li~~~l~~ 429 (583)
+|++|++|||||+++..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999998864
No 496
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.70 E-value=0.33 Score=52.88 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=24.3
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhh
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
+..|.-++|.||+|+|||++++.++...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999987655
No 497
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=87.60 E-value=0.27 Score=51.13 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=17.8
Q ss_pred ceEEEccCCCcHHHHHHHHH
Q psy17974 408 PVMFTGVTGVGKTVVARSIL 427 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l 427 (583)
-++|+||+|+|||+++.++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999998875
No 498
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.49 E-value=0.27 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.1
Q ss_pred ceEEEccCCCcHHHHHHHHHHh
Q psy17974 408 PVMFTGVTGVGKTVVARSILNK 429 (583)
Q Consensus 408 ~vLL~Gp~GtGKT~li~~~l~~ 429 (583)
.|.++|+||+|||++++.++..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999864
No 499
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=87.48 E-value=0.46 Score=50.71 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=34.1
Q ss_pred HhcCCceEEEccCCCcHHHHHHHHHHhhcccCCceEEEEEeccCCChHHHHH
Q psy17974 403 LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454 (583)
Q Consensus 403 l~~~~~vLL~Gp~GtGKT~li~~~l~~l~~~~~~~~~~i~fS~~Tt~~~lq~ 454 (583)
+..|.-+++.|+||+|||+++.+++...... +..+ +-||...++.++..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~v--l~fSlEms~~ql~~ 242 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVV--NLHSLEMGKKENIK 242 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEE--EEECSSSCTTHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEE--EEEECCCCHHHHHH
Confidence 4456789999999999999999887654222 3333 44666666665543
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.45 E-value=0.28 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred CceEEEccCCCcHHHHHHHHHHhh
Q psy17974 407 HPVMFTGVTGVGKTVVARSILNKL 430 (583)
Q Consensus 407 ~~vLL~Gp~GtGKT~li~~~l~~l 430 (583)
..+-|.||||||||+.++.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999988876
Done!