RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17974
(583 letters)
>gnl|CDD|193250 pfam12774, AAA_6, Hydrolytic ATP binding site of dynein motor
region D1. the 380 kDa motor unit of dynein belongs to
the AAA class of chaperone-like ATPases. The core of the
380 kDa motor unit contains a concatenated chain of six
AAA modules, of which four correspond to the ATP binding
sites with P-loop signatures described previously, and
two are modules in which the P loop has been lost in
evolution. This particular family is the D1 unit of the
motor and contains the hydrolytic ATP binding site.
Length = 231
Score = 156 bits (396), Expect = 3e-44
Identities = 68/105 (64%), Positives = 88/105 (83%)
Query: 137 QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSK 196
+ I+L+PS FITMNPGYAGRTELP+NLKALFRP AM+VPD+ LI E++L +EGF ++
Sbjct: 127 EEISLIPSVGIFITMNPGYAGRTELPENLKALFRPCAMVVPDFELICEIMLVAEGFLEAR 186
Query: 197 NLAQKMVNMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRANP 241
LA+K + +Y LC E LS+QDHYD+G+RA+KSVLV+AGSLKR +P
Sbjct: 187 LLARKFITLYTLCKELLSKQDHYDWGLRAIKSVLVVAGSLKRGDP 231
>gnl|CDD|219818 pfam08393, DHC_N2, Dynein heavy chain, N-terminal region 2.
Dyneins are described as motor proteins of eukaryotic
cells, as they can convert energy derived from the
hydrolysis of ATP to force and movement along
cytoskeletal polymers, such as microtubules. This region
is found C-terminal to the dynein heavy chain N-terminal
region 1 (pfam08385) in many members of this family. No
functions seem to have been attributed specifically to
this region.
Length = 408
Score = 133 bits (338), Expect = 3e-34
Identities = 44/84 (52%), Positives = 54/84 (64%)
Query: 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELL 60
M K + P P L + N LE I KSL YL+ KRSAFPRFYFLSN++LL
Sbjct: 264 MKKANKDPNVLEVCNIPGLLEKLEKLNEQLEKIQKSLNEYLESKRSAFPRFYFLSNDDLL 323
Query: 61 EILGQARNPQAVQPHLGKCFDGIA 84
EIL Q+++P AVQPHL K F+GI+
Sbjct: 324 EILSQSKDPTAVQPHLKKLFEGIS 347
>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3. the
380 kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This particular family is the D3 and is an ATP binding
site.
Length = 272
Score = 125 bits (316), Expect = 2e-32
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 374 FTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLAS 433
F DP MP +V T +TIR M+ L+ PVM G G GK+V+ + +KL +
Sbjct: 1 FELDPEMPLQACLVHTSETIRVRYFMDLLMERQRPVMLVGNAGTGKSVL---VGDKLASL 57
Query: 434 NTWAALTIN--FSAQTSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETY 491
+ A L N F+ T+SA Q +LE L+K+ G P K+L F+DD+NMP+++ Y
Sbjct: 58 DPDAYLVKNVPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGTKKLVYFIDDMNMPEVDAY 117
Query: 492 GAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLC--TACAPPGGGRMPLTPRFVRHFGL 549
G P L+RQ +D+G YDR K+ TL+++ C +C P G + R RHF +
Sbjct: 118 GTVQPHTLIRQHMDYGHWYDRSKL---TLKEIHNCQYVSCMNPTAGSFTINSRLQRHFCV 174
Query: 550 LSLPSPTEDTLKVIFKV 566
+L P +D L I+ +
Sbjct: 175 FALSFPGQDALSTIYNI 191
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 94.3 bits (234), Expect = 7e-20
Identities = 59/267 (22%), Positives = 101/267 (37%), Gaps = 25/267 (9%)
Query: 313 SYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVS------KDTKQLTP 366
+ G+ ES RF + L KD + RS + + +T
Sbjct: 1402 VLKLRIFGDKCRESTPRF--------YLISDGDLIKDLNERSDYEEMLIMMFNISAVITN 1453
Query: 367 WTTITPIFTYDPT--MPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVAR 424
+I F M ++++PT DT S + L ++ G G GK ++
Sbjct: 1454 NGSI-AGFELRGERVMLRKEVVIPTSDTGFVDSFSNEALNTLRSYIYCGPPGSGKEML-- 1510
Query: 425 SILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT----LLGAPLGKRLAVFV 480
+ L + NFS T + +LE + + T L P+ K L +F
Sbjct: 1511 -MCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFC 1569
Query: 481 DDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPL 539
D++N+P Y I LR ++ G + + W T+ ++L AC P GR+
Sbjct: 1570 DEINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKY 1629
Query: 540 TPRFVRHFGLLSLPSPTEDTLKVIFKV 566
RF+R + P +L+ I++
Sbjct: 1630 YERFIRKPVFVFCCYPELASLRNIYEA 1656
Score = 45.0 bits (106), Expect = 1e-04
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 16/98 (16%)
Query: 133 TAIHQMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGF 192
+A+ + PS + +N R + + + +P +G I
Sbjct: 1024 SAVVEHGLKSPSTPVEMIINE----RNIVLEIGRRALDMFLSNIP-FGAIKSR------- 1071
Query: 193 ESSKNLAQKMVNMYKLCSEQLSQQDHYDFGMRAVKSVL 230
++L +++ ++D F + L
Sbjct: 1072 --RESLDREIGAFNNEVDGIAREEDELMF--YPMFKSL 1105
Score = 33.4 bits (76), Expect = 0.45
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 30 LESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARN 68
++ + S+E L ++ R EEL++ + + N
Sbjct: 690 MDQVFMSIEKVLGLRWREVER--ASEVEELMDRVRELEN 726
Score = 33.0 bits (75), Expect = 0.54
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 104 IREEFEEVILALFEKYVDPGLNFVRKFCATAIHQMINLVPSCAAFITMNPGYAGRTELPD 163
I E F+++ + ++ ++ F+ MN GY R EL
Sbjct: 1653 IYEAVLMGSYLCFDEFNRLSEETMS----ASVELYLSSKDKTKFFLQMNYGYKPR-ELTR 1707
Query: 164 NLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQDHYDFGM 223
+L+A+F A D ++ ++ + E+ + ++V K S S+QD YDFG+
Sbjct: 1708 SLRAIFG-YAETRIDTPDVSLIIDWY--CEAIREKIDRLVQQ-KESST--SRQDLYDFGL 1761
Query: 224 RAVKSVLVMAGS 235
RA++ ++
Sbjct: 1762 RAIREMIAGHIG 1773
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 43.7 bits (103), Expect = 4e-05
Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 15/143 (10%)
Query: 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTL 467
++ G G GKT +AR+I N+L L +N S E+ L + L
Sbjct: 21 NLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79
Query: 468 LGAPLGKRLAVFVDDVN-MPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLC 526
A K +F+D+++ + + +L D + + V+
Sbjct: 80 --AEKAKPGVLFIDEIDSLSRGAQNALL---RVLETLNDLRIDRENVR--------VIGA 126
Query: 527 TACAPPGGGRMPLTPRFVRHFGL 549
T G L R +
Sbjct: 127 TNRPLLGDLDRALYDRLDIRIVI 149
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 11/143 (7%)
Query: 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE--GKLDKRTK 465
V+ G G GK+ +A + L + + + T+ +
Sbjct: 1 GVLLVGPPGTGKSELAERLAAAL---SNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVD 57
Query: 466 TLLGAPLGKRLAVFVDDVNMPKLETYGAQ-PPIELLRQFLDFGGLYDRDKMFWKTLQDVV 524
L + +D++N + + ++ R L GG +
Sbjct: 58 GPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPD-----GFR 112
Query: 525 LCTACAPPGGGRMPLTPRFVRHF 547
L P G L+P F
Sbjct: 113 LIATMNPLDRGLNELSPALRSRF 135
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 36.2 bits (83), Expect = 0.013
Identities = 27/156 (17%), Positives = 42/156 (26%), Gaps = 23/156 (14%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK 465
++ G G GKT +AR++ +L I + + L + K
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGV---IYIDGEDILEEVLDQLLLIIVGGKK 58
Query: 466 TLLGAPLGKRLA-----------VFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDK 514
L RLA + +D++ A L
Sbjct: 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL---------LLLLEELRLLL 109
Query: 515 MFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLL 550
+ V+ T G L RF R LL
Sbjct: 110 LLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLL 145
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 34.3 bits (79), Expect = 0.050
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASN 434
V+ G GKT + R +LN L
Sbjct: 3 VLVVGPKDSGKTTLIRKLLNYLKRRG 28
>gnl|CDD|215758 pfam00158, Sigma54_activat, Sigma-54 interaction domain.
Length = 168
Score = 33.9 bits (79), Expect = 0.097
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 400 EKLLLVNHPVMFTGVTGVGKTVVARSI 426
+++ + V+ TG +G GK + AR+I
Sbjct: 16 KRVAPTDATVLITGESGTGKELFARAI 42
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 34.5 bits (80), Expect = 0.17
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 14/78 (17%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSS-ARTQEILEGKLDKRTK 465
H ++ G G GKT +AR L+A T AA SA TS +EI+E +
Sbjct: 49 HSMILWGPPGTGKTTLAR-----LIAGTTNAAF-EALSAVTSGVKDLREIIE-----EAR 97
Query: 466 TLLGAPLGKRLAVFVDDV 483
LG+R +F+D++
Sbjct: 98 KNRL--LGRRTILFLDEI 113
>gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 527
Score = 34.0 bits (78), Expect = 0.27
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H +FTG GVGKT +AR IL K L
Sbjct: 39 HAYLFTGTRGVGKTTLAR-ILAKSL 62
>gnl|CDD|226573 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide transport
and metabolism].
Length = 261
Score = 33.3 bits (76), Expect = 0.27
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAAL------TINFSAQTSSARTQEILEGKLDK 462
++ TG G GKT A+ L K L W + S +E+ K
Sbjct: 4 IILTGYPGSGKTTFAKE-LAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLK 62
Query: 463 RTKTLLGAPLGKRLAVFVDDVN 484
+ LL + L K V VDD N
Sbjct: 63 SVERLLDSAL-KNYLVIVDDTN 83
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 33.9 bits (77), Expect = 0.28
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSA----RTQEILEGKL 460
++H +FTG GVGKT +AR IL K L T T T A R +++E
Sbjct: 36 LHHAYLFTGTRGVGKTTIAR-ILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94
Query: 461 DKRTKT-----LLG----APLGKRLAVF-VDDVNMPKLETYGA------QPP 496
RTK LL AP R V+ +D+V+M ++ A +PP
Sbjct: 95 ASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP 146
>gnl|CDD|225114 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 33.4 bits (77), Expect = 0.35
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 408 PVMFTGVTGVGKTVVARSI 426
V+ TG +G GK +VAR+I
Sbjct: 166 SVLITGESGTGKELVARAI 184
>gnl|CDD|131688 TIGR02640, gas_vesic_GvpN, gas vesicle protein GvpN. Members of
this family are the GvpN protein associated with the
production of gas vesicles produced in some prokaryotes
to give cells buoyancy. This family belongs to a larger
family of ATPases (pfam07728) [Cellular processes,
Other].
Length = 262
Score = 32.8 bits (75), Expect = 0.37
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 387 VPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430
+ T R S + L +PV G G GKT +A + K
Sbjct: 2 IETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR 45
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.8 bits (72), Expect = 0.47
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468
V+ TG +G GKT + R +L LL + S +E+L L + LL
Sbjct: 27 VLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRELAAELL 86
Query: 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLD 505
A+ G Q +ELL + L
Sbjct: 87 LLREALLAAL-------GAELIEGLQDLVELLERLLA 116
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 32.8 bits (75), Expect = 0.55
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H +FTG GVGKT V+R IL K L
Sbjct: 39 HAYLFTGTRGVGKTTVSR-ILAKSL 62
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 30.9 bits (70), Expect = 0.77
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ TG G GKT +A+ + +L
Sbjct: 1 ILITGTPGSGKTTLAKELAERL 22
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 31.6 bits (72), Expect = 1.0
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSAR---TQEI 455
LL V+ G GVGKT++AR++ L + I + + T
Sbjct: 36 ALLALLAGGHVLLEGPPGVGKTLLARALARAL----GLPFVRIQCTPDLLPSDLLGTYAY 91
Query: 456 LEGKLDKRTKTLLGAPL--GKRLAVFVDDVNM 485
L+ + PL R+ + +D++N
Sbjct: 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 32.0 bits (73), Expect = 1.1
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLL 431
V H +FTG GVGKT AR IL K L
Sbjct: 37 VAHAFLFTGARGVGKTSTAR-ILAKAL 62
>gnl|CDD|220440 pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075).
This domain, found in various prokaryotic proteins
(including putative ATP/GTP binding proteins), has no
known function.
Length = 348
Score = 31.4 bits (72), Expect = 1.2
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 412 TGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLLGAP 471
TG G GKTVVA ++ +L S+ T F + + +L L K
Sbjct: 7 TGGPGTGKTVVALNLFAELSDSD--LGRTAVFL--SGNHPLVLVLYEALAGDLKVRKKK- 61
Query: 472 LGKRLAVFVDDVNMPK 487
L ++ F+++++
Sbjct: 62 LFRKPTSFINNLHKAP 77
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 31.8 bits (73), Expect = 1.3
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
M TGV GVGKT AR IL + L
Sbjct: 47 QAFMLTGVRGVGKTTTAR-ILARAL 70
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.9 bits (68), Expect = 1.4
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS-SARTQEILEG---KLDKRT 464
+ TG +G GKT + R + +L + + + + ++IL L T
Sbjct: 7 GVLTGESGSGKTTLLRRLARQLPNRRV---VYVEAPSLGTPKDLLRKILRALGLPLSGGT 63
Query: 465 KTLLGAPLGKRLA------VFVDDVNMPKLETYGAQPPIELLRQFLDFGG 508
L + L + +D+ LE +E LR D
Sbjct: 64 TAELLEAILDALKRRGRPLLIIDEAQHLSLEA------LEELRDLYDLSE 107
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 31.3 bits (71), Expect = 1.4
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 401 KLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431
KL V+H +F G G GKT +AR IL K+L
Sbjct: 33 KLQRVSHAYIFAGPRGTGKTTIAR-ILAKVL 62
>gnl|CDD|224837 COG1926, COG1926, Predicted phosphoribosyltransferases [General
function prediction only].
Length = 220
Score = 30.4 bits (69), Expect = 2.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 50 RFYFLSNEELLEILGQARNPQAVQPH 75
F +S+EE+ +L +A P + H
Sbjct: 195 DFRQVSDEEVRALLRRANAPNLKKEH 220
>gnl|CDD|235331 PRK05022, PRK05022, anaerobic nitric oxide reductase transcription
regulator; Provisional.
Length = 509
Score = 30.9 bits (71), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 408 PVMFTGVTGVGKTVVARSI 426
V+ G TGVGK +VAR+I
Sbjct: 212 NVLILGETGVGKELVARAI 230
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with the
signal sequence when it emerges from the ribosome. SRP54
of the signal recognition particle has a three-domain
structure: an N-terminal helical bundle domain, a GTPase
domain, and the M-domain that binds the 7s RNA and also
binds the signal sequence. The extreme C-terminal region
is glycine-rich and lower in complexity and poorly
conserved between species. The GTPase domain is
evolutionary related to P-loop NTPase domains found in a
variety of other proteins.
Length = 197
Score = 30.1 bits (69), Expect = 2.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 409 VMFTGVTGVGKT 420
++ G GVGKT
Sbjct: 4 ILLVGPNGVGKT 15
>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit
clpA. [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 730
Score = 30.8 bits (70), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 406 NHPV---MFTGVTGVGKTVVARSI 426
N PV +F G TGVGKT +A+ +
Sbjct: 480 NKPVGSFLFVGPTGVGKTELAKQL 503
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 30.6 bits (69), Expect = 2.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H +FTG GVGKT ++R IL K L
Sbjct: 39 HAYLFTGTRGVGKTTLSR-ILAKSL 62
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 30.6 bits (70), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H +F+G GVGKT +AR +L K L
Sbjct: 39 HAYLFSGTRGVGKTTIAR-LLAKGL 62
>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase. The
broader family (TIGR00345) to which the current family
belongs consists of transport-energizing ATPases,
including to TRC40/GET3 family involved in
post-translational insertion of protein C-terminal
transmembrane anchors into membranes from the cyotosolic
face. This family, however, is restricted to ATPases
that energize pumps that export arsenite (or
antimonite).
Length = 566
Score = 30.4 bits (69), Expect = 2.7
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 377 DPTMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFT-GVTGVGKTVVARSILNKL 430
+P++ +++++ ++ T G GVGKT VA +I +L
Sbjct: 296 LDITTPQVPDLPSLS-----RLIDEIAKSEKGLIMTMGKGGVGKTTVAAAIAVRL 345
>gnl|CDD|226132 COG3604, FhlA, Transcriptional regulator containing GAF, AAA-type
ATPase, and DNA binding domains [Transcription / Signal
transduction mechanisms].
Length = 550
Score = 30.0 bits (68), Expect = 3.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 406 NHPVMFTGVTGVGKTVVARSI 426
+ V+ G TG GK +VAR+I
Sbjct: 246 DSTVLIRGETGTGKELVARAI 266
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 30.1 bits (68), Expect = 3.7
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLL 431
++H +F G G GKT VAR IL K L
Sbjct: 35 ISHAYIFAGPRGTGKTTVAR-ILAKSL 60
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional.
Length = 675
Score = 29.9 bits (68), Expect = 4.1
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLL--------ASNTWAALTINF 443
PV+ TG TGVGKT S + KLL + + NF
Sbjct: 179 RKPVVLTGGTGVGKT----SQVPKLLLWFNYLFGGFDNLDKIDPNF 220
>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH. This
family describes YqeH, a member of a larger family of
GTPases involved in ribosome biogenesis. Like YqlF, it
shows a cyclical permutation relative to GTPases EngA
(in which the GTPase domain is duplicated), Era, and
others. Members of this protein family are found in a
relatively small number of bacterial species, including
Bacillus subtilis but not Escherichia coli [Protein
synthesis, Other].
Length = 360
Score = 29.9 bits (68), Expect = 4.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNT 435
V GVT VGK+ S++NKLL N
Sbjct: 157 VYVVGVTNVGKS----SLINKLLKQNN 179
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.8 bits (67), Expect = 5.1
Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNK 429
V H +FTG GVGKT AR IL K
Sbjct: 37 VAHAYLFTGPRGVGKTSTAR-ILAK 60
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 29.7 bits (66), Expect = 5.3
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNT 435
V+H +FTG GVGKT + R +L K L T
Sbjct: 37 VHHAYLFTGTRGVGKTTLGR-LLAKCLNCKT 66
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 29.2 bits (66), Expect = 5.6
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 35/135 (25%)
Query: 344 VSLGKDPDLRSYFVSK-----DTKQLTPWTTITPIFTYDPTMPFFDMM---------VPT 389
V DPD + + + + + P + I D +
Sbjct: 86 VVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145
Query: 390 IDTIRFGSIMEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQT 447
+ + G +E+L LL + G +GVGK+ +++N LL
Sbjct: 146 FVSAKNGDGLEELAELLAGKITVLLGQSGVGKS----TLINALLPELN------------ 189
Query: 448 SSARTQEILEGKLDK 462
+T EI E KL +
Sbjct: 190 --QKTGEISE-KLGR 201
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 29.2 bits (66), Expect = 5.7
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ G TG GKT + ++ +L
Sbjct: 45 IIIYGPTGTGKTATVKFVMEEL 66
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 27.9 bits (63), Expect = 6.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443
N ++ TG VGKT + L +LL+ N L IN
Sbjct: 2 NKIIVITGPRQVGKTTLLLQFLKELLSENI---LYINL 36
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 29.2 bits (66), Expect = 6.6
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 378 PTMPFFDMMVPTI-DTIRFGSIMEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLLASN 434
PT+ VP + + + G IMEK+ +F V ++R++L S
Sbjct: 280 PTVMIG---VPRVWEKVYKG-IMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSW 335
Query: 435 TWAALTINFSAQTSSARTQEILEGKLDKRTKTLL--GAPLGKRLAVFVDDVNMPKLETYG 492
A + F + L R + L GAPL L F + +P LE YG
Sbjct: 336 LLVADRLVFRK----------IRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYG 385
>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 29.2 bits (66), Expect = 6.6
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 37 LESYLDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPHLGKCFDGIAGWTPYVKSWLNL 96
E Y + + A R+ NE L +A +A+ L + Y+ +
Sbjct: 300 DEKYAEEIKKAKERYKAKLNEAT-SFLAKA---KALHDKLEEI---------YIP---AM 343
Query: 97 LFDKVPLIREEFEEVILALFEKYV 120
F KV I+EE E IL + V
Sbjct: 344 DFSKVDAIKEEILERILRYAAEVV 367
>gnl|CDD|211402 cd11526, SYLF_FYVE, The SYLF domain (also called DUF500), a novel
lipid-binding module, of FYVE zinc finger domain
containing proteins. This subfamily is composed of
uncharacterized proteins from plants and stramenopiles
containing a FYVE zinc finger domain followed by a SYLF
domain (also called DUF500). The SYLF domain of the
related protein, SH3YL1, binds phosphoinositides with
high affinity, while the N-terminal SYLF domains of both
Ysc84p and Lsb3p have been shown to bind and bundle
actin filaments, as well as bind liposomes with high
affinity.
Length = 201
Score = 28.7 bits (65), Expect = 6.7
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 251 RALRDSNLP-KFLADDAGLFLVDVSKARMICSLMEST-LIEPGMLDRSHNSENTGPLLVQ 308
D ++P L GL + V+KA I S T L+ + R + + P +
Sbjct: 18 NLEPDQSIPHALLRGAKGLAFLTVAKAGFIVSGKVGTGLV----VARLPDGSWSAPSAIG 73
Query: 309 TFLWSYLWAVGGNLTD-----ESRDRFEAFAREQFTDEPNVSLG 347
T + VGG LTD +R A + F VSLG
Sbjct: 74 TAGLGWGAQVGGELTDFVIVLRTRS-----AVKAFCGRGQVSLG 112
>gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 509
Score = 29.3 bits (65), Expect = 6.7
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 29/116 (25%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD--- 461
++H +FTG GVGKT ++R IL K L N ++ N + R EI EG+
Sbjct: 37 LHHAYLFTGTRGVGKTTISR-ILAKCL--NCEKGVSANPCNDCENCR--EIDEGRFPDLF 91
Query: 462 ----------KRTKTLLG----APLGKRLAVF-VDDVNMPKLETYGA------QPP 496
+ T+ LL AP R V+ +D+V+M ++ A +PP
Sbjct: 92 EVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP 147
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.6 bits (66), Expect = 6.7
Identities = 45/178 (25%), Positives = 65/178 (36%), Gaps = 36/178 (20%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALT-INFSAQT-------SSARTQEIL 456
V P++ G GVGKT S++ LA T L IN S QT S +E
Sbjct: 1542 VGKPILLEGSPGVGKT----SLITA-LARKTGKKLIRINLSEQTDLCDLFGSDLPVEE-- 1594
Query: 457 EGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMF 516
G+ L A + V +D++N+ +Q +E L LD R + +
Sbjct: 1595 GGEFRWMDAPFLHA-MRDGGWVLLDEINL------ASQSVLEGLNACLDH-----RREAY 1642
Query: 517 WKTLQDVVLCT------ACAPP---GGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFK 565
L A P GGGR L F+ F ++ + T D + I
Sbjct: 1643 IPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIAN 1700
>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 29.4 bits (66), Expect = 6.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 405 VNHPVMFTGVTGVGKTVVARSI 426
+ ++ G +GVGKT AR I
Sbjct: 34 IPQSILLVGASGVGKTTCARII 55
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 29.3 bits (66), Expect = 6.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 407 HPVMFTGVTGVGKTVVAR 424
H +FTG GVGKT +AR
Sbjct: 39 HAYLFTGTRGVGKTSLAR 56
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 28.3 bits (64), Expect = 7.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443
V+ TGV GVGKT V L KL +NF
Sbjct: 5 VVVTGVPGVGKTTVLNKALEKLKEDYK----IVNF 35
>gnl|CDD|226350 COG3829, RocR, Transcriptional regulator containing PAS, AAA-type
ATPase, and DNA-binding domains [Transcription / Signal
transduction mechanisms].
Length = 560
Score = 29.2 bits (66), Expect = 8.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 408 PVMFTGVTGVGKTVVARSILNK 429
V+ G +G GK + AR+I N
Sbjct: 270 TVLILGESGTGKELFARAIHNL 291
>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated.
Length = 313
Score = 28.8 bits (65), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H + G G+GK+++A+ I K+L
Sbjct: 27 HAHIIVGEDGIGKSLLAKEIALKIL 51
>gnl|CDD|225822 COG3284, AcoR, Transcriptional activator of acetoin/glycerol
metabolism [Secondary metabolites biosynthesis,
transport, and catabolism / Transcription].
Length = 606
Score = 28.9 bits (65), Expect = 8.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILN 428
E++ + PV+ G TG GK V+AR+I
Sbjct: 329 AERVAATDLPVLLQGETGTGKEVLARAIHQ 358
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 28.8 bits (65), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
V G TG GKT V + ++ +L
Sbjct: 43 VFIYGKTGTGKTAVTKYVMKEL 64
>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 363
Score = 28.6 bits (64), Expect = 8.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 397 SIMEKLLL--VNHPVMFTGVTGVGKTVVARSILNKLL 431
+I L L ++H + +G GVGKT +AR +L K L
Sbjct: 27 AISNGLSLGRIHHAWLLSGTRGVGKTTIAR-LLAKSL 62
>gnl|CDD|132870 cd07232, Pat_PLPL, Patain-like phospholipase. Patatin-like
phospholipase. This family consists of various patatin
glycoproteins from plants and fungi. The patatin protein
accounts for up to 40% of the total soluble protein in
potato tubers. Patatin is a storage protein, but it also
has the enzymatic activity of a lipid acyl hydrolase,
catalyzing the cleavage of fatty acids from membrane
lipids. Members of this family have been found also in
vertebrates.
Length = 407
Score = 28.8 bits (65), Expect = 8.9
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 158 RTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVNMYKLCSEQLSQQD 217
R + +N + LYSE + +KNL ++ ++ + C + L +
Sbjct: 2 RGCVKNNFAGIENGR--------------LYSETYYGTKNLVEEYIDEVEACLKYLRESS 47
Query: 218 HYD 220
D
Sbjct: 48 QLD 50
>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 28.9 bits (65), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASN 434
+ H +F+G GVGKT +AR + L N
Sbjct: 37 IAHAYLFSGPRGVGKTTIARILAKALNCEN 66
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 28.8 bits (65), Expect = 9.3
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 383 FDMMVPTIDTIRFGSIMEKLLLVNHP----VMFTGVTGVGKTVVARSILNKLLASNTWAA 438
++P D + + + KL++ N P +F G GKT +A ++L+ +
Sbjct: 406 LHCLLPNFDDVIYD--ILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC----GGKS 459
Query: 439 LTINFSA 445
L +N
Sbjct: 460 LNVNCPP 466
>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional.
Length = 184
Score = 28.0 bits (63), Expect = 9.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 404 LVNHPVMFTGVTGVGKTVVARSILNKL 430
L V+ G+ G GK+ V R + L
Sbjct: 8 LGKRTVVLVGLMGAGKSTVGRRLATML 34
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 28.8 bits (65), Expect = 9.6
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 146 AAFITMNPGYAGRTELPDNLKA 167
AF+ + GY EL LK
Sbjct: 450 KAFVVLKDGYQPSPELETELKD 471
>gnl|CDD|220739 pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein
DNA-binding domain. The plasmid conjugative coupling
protein TrwB forms hexamers from six structurally very
similar protomers. This hexamer contains a central
channel running from the cytosolic pole (made up by the
AADs) to the membrane pole ending at the transmembrane
pore shaped by 12 transmembrane helices, rendering an
overall mushroom-like structure. The TrwB_AAD (all-alpha
domain) domain appears to be the DNA-binding domain of
the structure. TrwB, a basic integral inner-membrane
nucleoside-triphosphate-binding protein, is the
structural prototype for the type IV secretion system
coupling proteins, a family of proteins essential for
macromolecular transport between cells and export.
Length = 386
Score = 28.7 bits (65), Expect = 9.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 410 MFTGVTGVGKTVVARSILNKLLA 432
+ G TG GKT R +L+++ A
Sbjct: 19 LIVGTTGTGKTQALRELLDQIRA 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,271,401
Number of extensions: 3016684
Number of successful extensions: 3176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3169
Number of HSP's successfully gapped: 87
Length of query: 583
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 481
Effective length of database: 6,413,494
Effective search space: 3084890614
Effective search space used: 3084890614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.4 bits)