RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17974
(583 letters)
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 305 bits (782), Expect = 1e-90
Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 13/301 (4%)
Query: 270 LVDVSKARMICSLMESTLIEPGMLDRSHNSENTGPLLVQTFLWSYLWAVGGNLTDESRDR 329
+ +K L + ++ + ++ ++ S L+A+ G+ T ES+
Sbjct: 1134 VRTFNKLETAVQLAVHLISSYRQWFQNLDDKSLKDVITLLIKRSLLYALAGDSTGESQRA 1193
Query: 330 FEAFAREQFTDEPNVSLGKDPDLRSYFVSKDTKQLTPWTTITPIFTYDP-TMPFFDMMVP 388
F F + + D + ++ D + + + P + + + D+++P
Sbjct: 1194 FIQTINTYFGHDS----QELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRPDIVIP 1249
Query: 389 TIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTS 448
TIDTI+ I LL ++ G G GKT++ + L + + + INFS T+
Sbjct: 1250 TIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNS---SLYDVVGINFSKDTT 1306
Query: 449 SARTQEILEGKLDKRTK----TLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFL 504
+ L + T TLL K L +F D++N+PKL+ YG+Q + LRQ +
Sbjct: 1307 TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLM 1366
Query: 505 DFGGLYDRDKMFWKTLQDVVLCTACAPPGG-GRMPLTPRFVRHFGLLSLPSPTEDTLKVI 563
+ G + + W T++ + + AC PP GR+P++ RF RH +L L P+ +L I
Sbjct: 1367 EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQI 1426
Query: 564 F 564
+
Sbjct: 1427 Y 1427
Score = 259 bits (662), Expect = 9e-75
Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 137 QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSK 196
+ L P A FIT+NPGY GR+ELP+NLK FR +M P G IAE++L GFE SK
Sbjct: 740 EETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQIMGFEDSK 799
Query: 197 NLAQKMVNMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRANPDKNEDVVLIRALRDS 256
+LA K+V+ +L S + S +HY FG+R +K VL L + + ++ +L+
Sbjct: 800 SLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGE--GEKTVVESLKRV 857
Query: 257 NLPKFLADDAGLFL 270
LP D +F
Sbjct: 858 ILPSLGDTDELVFK 871
Score = 133 bits (337), Expect = 1e-32
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELL 60
+ + P+F + L+ I SL ++L+ +R FPRFYFL N++LL
Sbjct: 343 TTRAFQLDTTIEVIHIPNFDTTLKLTIDSLKMIKSSLSTFLERQRRQFPRFYFLGNDDLL 402
Query: 61 EILGQARNPQAVQPHLGKCFDGIA 84
+I+G ++ V + K F I
Sbjct: 403 KIIGSGKHHDQVSKFMKKMFGSIE 426
Score = 57.2 bits (138), Expect = 1e-08
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 11/124 (8%)
Query: 137 QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPD-------YGLIAEVVL-- 187
+ + + P GR + + + + P Y + + +
Sbjct: 1378 KWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKL 1437
Query: 188 YSEGFESSKNLAQKMVNMYKLCSEQLS--QQDHYDFGMRAVKSVLVMAGSLKRANPDKNE 245
E ++ A+ V++Y C + S Q HY F R + ++ + P +
Sbjct: 1438 VPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQTL 1497
Query: 246 DVVL 249
++
Sbjct: 1498 RSLI 1501
Score = 49.8 bits (119), Expect = 2e-06
Identities = 5/67 (7%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 85 GWTPYVKSWLNLLFDKV-----PLIREEFEEVILALFEKYVDPGLNFVRKFCATAIHQ-M 138
+ + LN ++ + ++ +++I F+ + +
Sbjct: 1077 SISSKIDHLLNKSYEALDNKLSMFELDKLKDLISDSFDMASLTNIFTCSNDLVHILGVRT 1136
Query: 139 INLVPSC 145
N + +
Sbjct: 1137 FNKLETA 1143
Score = 28.7 bits (64), Expect = 7.0
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 402 LLLVNHPVMFTGVTGVGKTVV 422
+ ++ G G GKT
Sbjct: 919 MQKTQQALILVGKAGCGKTAT 939
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 296 bits (758), Expect = 2e-87
Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 13/327 (3%)
Query: 245 EDVVLIRALRDSNLPKFLADDAGLFLVDVSKARMICSLMESTLIEPGMLDRSHNSENTGP 304
++ + L D+ + D L +++ + M S++ D + EN
Sbjct: 1145 PGGLVHKVLEDAGQRPHIMDFTRLRVLNSFFSLMNRSIVNVIEYNQLHSDFPMSPENQSN 1204
Query: 305 LLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVSKDTKQL 364
+ L+S +W +GG++ R+ F F + L Y VS D
Sbjct: 1205 YITNRLLYSLMWGLGGSMGLVERENFSKFIQTIAITPV---PANTIPLLDYSVSIDDANW 1261
Query: 365 TPWTTITPIFTYDP-TMPFFDMMVPTIDTIRFGSIMEKLLLVNHPVMFTGVTGVGKTVVA 423
+ W P + + D+++PT+DT R ++ L + P++ G G GKT+
Sbjct: 1262 SLWKNKVPSVEVETHKVASPDVVIPTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTL 1321
Query: 424 RSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRT----KTLLGAP-LGKRLAV 478
S L + +++NFS+ T+ + + + + +T+L LGK L V
Sbjct: 1322 TSTLRAF---PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378
Query: 479 FVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPP-GGGRM 537
F D++N+P + YG Q I +RQ ++ GG + W L + AC PP GR+
Sbjct: 1379 FCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRV 1438
Query: 538 PLTPRFVRHFGLLSLPSPTEDTLKVIF 564
LT RF+RH +L + P+ +L I+
Sbjct: 1439 QLTHRFLRHAPILLVDFPSTSSLTQIY 1465
Score = 235 bits (602), Expect = 8e-67
Identities = 72/154 (46%), Positives = 97/154 (62%), Gaps = 20/154 (12%)
Query: 137 QMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSK 196
+ I+L F+TMNPGYAGR+ LPDNLK LFR MAM+ PD +IA+V+LYS+GF++++
Sbjct: 700 KNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVMLYSQGFKTAE 759
Query: 197 NLAQKMVNMYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRANPDK------------- 243
LA K+V ++KLC EQLS Q HYDFG+RA+KSVLV AG +KR
Sbjct: 760 VLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTK 819
Query: 244 -------NEDVVLIRALRDSNLPKFLADDAGLFL 270
E VL+ ++ D+ +PK +ADD L
Sbjct: 820 ADQIYCQYEIGVLLNSINDTMIPKLVADDIPLIQ 853
Score = 128 bits (322), Expect = 7e-31
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 1 MAKTAEKPQAFSTATSPDFLPAFQTNNAHLESILKSLESYLDVKRSAFPRFYFLSNEELL 60
+ K + P + + L + K+L YL+ +RSAF RFYF+ +E+LL
Sbjct: 284 LKKVSGAPLILEVLAIERIQQTMERLSDLLGKVQKALGEYLERQRSAFARFYFVGDEDLL 343
Query: 61 EILGQARNPQAVQPHLGKCFDGIAG 85
EI+G +++ +Q H K F G+A
Sbjct: 344 EIIGNSKDIIKIQKHFRKMFAGLAN 368
Score = 41.8 bits (98), Expect = 8e-04
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 151 MNPGYAGRTELPDNLKALFRPMAMMVPD-------YGLIAEVVL--YSEGFESSKNLAQK 201
P AGR +L + + P YG ++ + NL
Sbjct: 1430 NPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDA 1489
Query: 202 MVNMYKLCSEQL--SQQDHYDFGMRAV-KSVLVMAGSLKRANPDKNEDVV 248
MV Y ++ Q HY + R + + + +++ + E +V
Sbjct: 1490 MVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLV 1539
Score = 28.3 bits (63), Expect = 9.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILN 428
+ ++L +NH VM G +G GKT L
Sbjct: 899 LHQILNINHGVMMVGPSGGGKTTSWEVYLE 928
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 1e-13
Identities = 74/591 (12%), Positives = 150/591 (25%), Gaps = 190/591 (32%)
Query: 18 DFLPAFQTNNAHLESILKSLESY--LDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPH 75
D L F+ ++ + + + D+ +S LS EE+ I+
Sbjct: 20 DILSVFE------DAFVDNFDCKDVQDMPKSI------LSKEEIDHIIMS---------- 57
Query: 76 LGKCFDGIAGWTPYVKSWLNLLFDKVPLIREEFEEVILALFEKYVDPGLNFVRKFCATAI 135
S LF + + EE++ +K+V+ L KF + I
Sbjct: 58 ------------KDAVSGTLRLFW---TLLSKQEEMV----QKFVEEVLRINYKFLMSPI 98
Query: 136 HQMINLVPSCAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESS 195
PS M Y + + N +F V
Sbjct: 99 KTEQR-QPS-----MMTRMYIEQRDRLYNDNQVFAKYN--VS------------------ 132
Query: 196 KNLAQKMVNMYKLCSEQLSQQD----HYDFGMRAV-KSVLVMAGSLKRANPDKNEDVVLI 250
+ + +L G+ K+ + +
Sbjct: 133 ---RLQPYLKLRQALLELRPAKNVLID---GVLGSGKTWVA------------------L 168
Query: 251 RALRDSNLPKFLADDAGLFLVDVSKARMICSLME-----STLIEPGMLDRSHNSENTGPL 305
+ + +F +++ +++E I+P RS +S N L
Sbjct: 169 DVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KL 225
Query: 306 LVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRSYFVSKDTKQLT 365
+ R +P V + +
Sbjct: 226 R----------------IHSIQAEL----RRLLKSKPYE--------NCLLVLLNVQNAK 257
Query: 366 PWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKL--------LLVNHPVMFTGVTGV 417
W F++ + T RF + + L L +H + T
Sbjct: 258 AWNA-------------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDE 302
Query: 418 GKTVVARSI-------------LNKLLASNTWAAL-----TINFSAQTSSARTQEILEGK 459
K+++ + + N S ++ T + + + I+E
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 460 LDKRTKTLLGAPLGKRLAVFVDDVNMPK--LETYGAQPPIELLRQFLDF---GGLYDRD- 513
L+ + RL+VF ++P L + ++ L ++
Sbjct: 363 LNVLEPAEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 514 KMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLL------SLPSPTED 558
K ++ + L L V H+ + L P D
Sbjct: 422 KESTISIPSIYLELKVKLE--NEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Score = 57.6 bits (138), Expect = 1e-08
Identities = 41/304 (13%), Positives = 84/304 (27%), Gaps = 94/304 (30%)
Query: 243 KNEDVVLIRALRDSNLPKFLADDAGLFLVDVSKARMICSLMESTLIEPGMLDRSH----- 297
+ +D++ + F+ + + D+ K+ + ++ ++ + +
Sbjct: 17 QYKDILSV------FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 298 ---NSENTGPLLVQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKDPDLRS 354
E VQ F V L R ++ F E R
Sbjct: 71 LLSKQEEM----VQKF-------VEEVL----RINYK-FLMSPIKTEQR---QPSMMTRM 111
Query: 355 YFVSKDTKQLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLL-LVNHP-VMFT 412
Y +D Y+ F V + + + LL L V+
Sbjct: 112 YIEQRDR-------------LYNDNQVFAKYNVSRLQPYL--KLRQALLELRPAKNVLID 156
Query: 413 GVTGVGKTVVA----------------------------RSILNKLLASNTWAALTINFS 444
GV G GKT VA ++L L + N++
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--KLLYQIDPNWT 214
Query: 445 AQTSSARTQEILEGKLDKRTKTLLGAPLGKR-LAVFVDDVNMPKLETYGAQPPIELLRQF 503
+++ + ++ + + LL + + L V + +V K F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAK-----------AWNAF 262
Query: 504 LDFG 507
+
Sbjct: 263 -NLS 265
Score = 40.2 bits (93), Expect = 0.002
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 46/189 (24%)
Query: 31 ESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARNPQAVQPH--------LGKCFDG 82
++ L Y V++ + LE+ + N A+ H + K FD
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYAL--HRSIVDHYNIPKTFD- 460
Query: 83 IAGWTPYVKSWLNLLFDKVP--LIREEFEEVILALFEK-YVDPGLNFV-RKFCAT----- 133
+ + L E E + LF ++D F+ +K
Sbjct: 461 --SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-TLFRMVFLD--FRFLEQKIRHDSTAWN 515
Query: 134 AIHQMINLVPSC---AAFITMN-PGYAGRTELPDNLKALFRP--------------MAMM 175
A ++N + +I N P Y + L L + +A+M
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERL--VNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 176 VPDYGLIAE 184
D + E
Sbjct: 574 AEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 76/488 (15%), Positives = 141/488 (28%), Gaps = 151/488 (30%)
Query: 141 LVPSCAAFITMNPGYAGRTELPDN-LKALFRPMAMMVPDYGLIAEVVLYSE--GFESSKN 197
LVP+ + F A ++L + K L P D L + G+ SS
Sbjct: 21 LVPTASFF------IA--SQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL- 71
Query: 198 LAQKMVNMYKLCSEQLSQQDHYDFGMRA--VKSVLVMAGSLKRANPDKNEDVVL--IRAL 253
+ V + + + + + ++ K ++++ I A
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 254 RDSNLPKFLADDAGLF-LVDVSKARMICSLM------ESTLIEPGMLDRSHNSENTGPLL 306
+ P ++ LF V A+ + ++ + E L + T +L
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQGNTDDYFEE---LRDLYQ---TYHVL 183
Query: 307 VQTFLWSYLWAVGGNLTDESRDRFEAFAREQFTDEPNVSLGKD-----------PDLRSY 355
V + S + R E + G + PD + Y
Sbjct: 184 VGDLI------------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD-KDY 230
Query: 356 FVSKDTKQLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGS--IMEKLLLVNHPVM--- 410
+S PI + P I I+ + KLL +
Sbjct: 231 LLS------------IPI-----SCPL-------IGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 411 FTGVTGVGKTVVARSILNKLLASNTWA--------ALTINF-----SAQT--SSARTQEI 455
G TG + +V + +++W A+T+ F + +++ I
Sbjct: 267 LKGATGHSQGLVTAVAIA---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 456 LEGKLDKRTKTLLGAP---LGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFG----- 507
LE L+ G P L + ++ +++ Y + L G
Sbjct: 324 LEDSLENNE----GVPSPMLS------ISNLTQEQVQDY-----VNKTNSHLPAGKQVEI 368
Query: 508 GLYDRDKMFWKTLQDVV---------LCTA----CAPPGG--GRMPLT---PRFVRHFGL 549
L + K VV L AP G R+P + +F F
Sbjct: 369 SLVNGAKNL------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 550 LSLP--SP 555
++ P S
Sbjct: 423 VASPFHSH 430
Score = 38.5 bits (89), Expect = 0.008
Identities = 38/215 (17%), Positives = 57/215 (26%), Gaps = 93/215 (43%)
Query: 388 PTIDTIRFGSIMEKLLLVNHPVMF--TGVTGVGKTVVARSILNKLLASNTWAA------L 439
P TI FG K + N+ M T V G KT +N+ S T+ +
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 440 TINFSAQ-----TSSARTQEILEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQ 494
T Q A +++ L T G LG E Y A
Sbjct: 1729 TQF--TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG---------------E-YAA- 1769
Query: 495 PPIELLRQFLDFGGLYDRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPS 554
L + A ++S+
Sbjct: 1770 ------------------------------LA-SLA-----------------DVMSI-- 1779
Query: 555 PTEDTLKVIFKVR------TSPGKQEGTS--SILA 581
E ++V+F R P + G S ++A
Sbjct: 1780 --ESLVEVVFY-RGMTMQVAVPRDELGRSNYGMIA 1811
Score = 35.8 bits (82), Expect = 0.049
Identities = 37/246 (15%), Positives = 73/246 (29%), Gaps = 75/246 (30%)
Query: 97 LFDKVPLIREEFEEVILALFEKYVDPGLNFVRKFCATAIHQMINLVPSCAAFITMNPGYA 156
L+ ++ + + + F +I ++ P G
Sbjct: 1635 LYKTSKAAQDVWNRA-----DNHFKDTYGF-------SILDIVINNPVNLTI--HFGGEK 1680
Query: 157 GRTELPDNLKALFRPMAMM---VPDYGLIAEVV-------LYSEGFESSKNL------AQ 200
G+ + +N AM+ + D L E + S F S K L Q
Sbjct: 1681 GK-RIRENY------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 201 ------KMVNMYKLCSEQLSQQD-----H----YDFGMRAVKSVLV-MAGSLKRANPDKN 244
+ L S+ L D H Y + L +A +
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY--------AALASLADVMSI------ 1779
Query: 245 EDVVLIRALR----DSNLPKFLADDAGLFLVDVSKARMICSLMESTLIEPGMLDRSHNSE 300
E +V + R +P+ + ++ ++ R+ S + L +++R +
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY--VVER--VGK 1835
Query: 301 NTGPLL 306
TG L+
Sbjct: 1836 RTGWLV 1841
Score = 30.4 bits (68), Expect = 2.4
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 289 EPGM--------------LDR--SHNSENTG-PLL--VQTFLWSYLWAVGGNLTDESRDR 329
E GM +R +H + G +L V + GG R+
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 330 FEAFAREQFTDEPNVSL----GKDPDLRSYFVSKDTKQLTPWTTIT-P-IFT 375
+ A E D + + SY + L+ T T P +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQPALTL 1738
Score = 29.6 bits (66), Expect = 4.2
Identities = 24/126 (19%), Positives = 37/126 (29%), Gaps = 35/126 (27%)
Query: 479 FVDDVNMPKLETYGAQPP---IELLRQFLDF-GGLYDRDKMFWKTLQDVVLCTACAPPGG 534
F + P P EL+ +FL + L + K D VL
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK---VGQFDQVLNLC------ 87
Query: 535 GRMPLTPRFVRHF--G------LLSLPSPTEDTL----KVI---FKVRTSPGK--QEGTS 577
LT F + G L + TL ++I R + + ++
Sbjct: 88 ----LT-EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 578 SILAEA 583
S L A
Sbjct: 143 SALFRA 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 33.5 bits (77), Expect = 0.10
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468
+ F G GVGKT +A + L + + + + EGK K KT+L
Sbjct: 41 LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK-HLMDEGKDTKFLKTVL 99
Query: 469 GAPLGKRLAVFVDDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDK 514
+P+ + +DD+ +L + EL+ + Y+ K
Sbjct: 100 NSPV-----LVLDDLGSERLSDWQR----ELISYIIT--YRYNNLK 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 33.7 bits (78), Expect = 0.11
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLL 431
++H +F+G GVGKT +AR +L K L
Sbjct: 44 IHHAYLFSGTRGVGKTSIAR-LLAKGL 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 33.4 bits (77), Expect = 0.19
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLL 431
H +F+G GVGKT +AR +L K L
Sbjct: 39 HAYLFSGTRGVGKTSIAR-LLAKGL 62
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 32.1 bits (74), Expect = 0.20
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSI 426
+++L + V G G G+ AR +
Sbjct: 17 LQQLSETDIAVWLYGAPGTGRMTGARYL 44
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.7 bits (72), Expect = 0.51
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468
+ G G+GK+ + ++ ++L + ++F + + I G + + +
Sbjct: 155 LYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK-NAISNGSVKEEIDAVK 213
Query: 469 GAPLGKRLAVFVDDV 483
P+ + +DD+
Sbjct: 214 NVPV-----LILDDI 223
>3co5_A Putative two-component system transcriptional RES regulator;
structural genomics, APC89341.1; 2.40A {Neisseria
gonorrhoeae}
Length = 143
Score = 30.6 bits (70), Expect = 0.54
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILE 457
E PV TG G VAR W + + E+L+
Sbjct: 21 EAAAKRTSPVFLTGEAGSPFETVARYFHKN---GTPWVSP---ARVEYLIDMPMELLQ 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.74
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 6 EKPQAFSTATS------PDFLPAFQTNNAHLE 31
EK QA + D PA A +E
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAI-KATME 47
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 30.8 bits (70), Expect = 0.86
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 415 TGVGKTVVARSILNKLLASNTWAA 438
T VGKTV + ++L A+ A
Sbjct: 11 TEVGKTVASCALLQAAKAAGYRTA 34
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 31.3 bits (70), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
+F G+TG GKT V++ I N++
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEI 69
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 399 MEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLL 431
+++L L + G +GVGK+ SIL++L
Sbjct: 156 IDELVDYLEGFICILAGPSGVGKS----SILSRLT 186
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 30.6 bits (70), Expect = 1.4
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 399 MEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLL 431
+ + + +F G +GVGK+ S+LN +
Sbjct: 164 LADIIPHFQDKTTVFAGQSGVGKS----SLLNAIS 194
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 30.7 bits (69), Expect = 1.4
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 404 LVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEG 458
+ V+ G G GKT +A + L + A+ + ++T+ + +
Sbjct: 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.5 bits (68), Expect = 1.5
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSAR 451
G G GKTV R + T + IN +
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.2 bits (69), Expect = 1.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 399 MEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLL 431
+E+L L G++GVGK+ S+LN +
Sbjct: 160 IEELKEYLKGKISTMAGLSGVGKS----SLLNAIN 190
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 30.3 bits (69), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 399 MEKL--LLVNHPVMFTGVTGVGKTVVARSILNKLL 431
++ L L +F G +GVGK+ S+LN LL
Sbjct: 206 LKPLEEALTGRISIFAGQSGVGKS----SLLNALL 236
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 30.4 bits (68), Expect = 1.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 412 TGVTGVGKTVVARSILNKL 430
G+TG GKT V + +L+KL
Sbjct: 51 YGLTGTGKTAVVKFVLSKL 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 30.7 bits (70), Expect = 1.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 410 MFTGVTGVGKTVVARSI 426
+F G TGVGKT V +
Sbjct: 492 LFAGPTGVGKTEVTVQL 508
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 400 EKLLLVNHP--VMFTGVTGVGKT 420
+K H ++ G TG GKT
Sbjct: 97 DKWQEPIHSKYIVLFGSTGAGKT 119
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 30.1 bits (68), Expect = 1.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 415 TGVGKTVVARSILNKLLASN 434
TGVGKTVV ++ + +
Sbjct: 36 TGVGKTVVCAALASAARQAG 55
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 30.0 bits (67), Expect = 2.0
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 353 RSYFVSKDTKQLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLVNHP---- 408
R + + T I + + + ++P +D++ + + K ++ N P
Sbjct: 114 RFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFL--KCMVYNIPKKRY 171
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKL 460
+F G GKT +A ++L AL +N + ++ L
Sbjct: 172 WLFKGPIDSGKTTLAAALLELCGGK----ALNVNLPLDRLNFELGVAIDQFL 219
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 29.7 bits (67), Expect = 2.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 415 TGVGKTVVARSILNKLLASN 434
T VGKT ++ ++ N
Sbjct: 14 TEVGKTYISTKLIEVCEHQN 33
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 29.8 bits (67), Expect = 2.1
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 415 TGVGKTVVARSILNKLLASN 434
T GKT AR + A
Sbjct: 31 TNAGKTTCARLLAQYCNACG 50
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 404 LVNHP----VMFTGVTGVGKTVVARS 425
LV HP + FTG VG + +
Sbjct: 247 LVEHPRIRFINFTGSLEVGLKIYEAA 272
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 29.3 bits (66), Expect = 2.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLL 431
+ G GVGKT + +I N+L
Sbjct: 54 MKGLYLHGSFGVGKTYLLAAIANELA 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 2.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ +G G GK+ +A ++ N
Sbjct: 12 LLLSGHPGSGKSTIAEALANLP 33
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 29.9 bits (68), Expect = 2.6
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 404 LVNHP----VMFTGVTGVGKTVVARSILNKLLASN 434
LV+HP + FTG VG + R+ + + ++
Sbjct: 246 LVDHPKTSLITFTGSKDVGVRLYERAAVVRPGQNH 280
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.8 bits (66), Expect = 2.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTIN 442
V+ G + GKT ++R++ + L N + L IN
Sbjct: 141 VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 2.9
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 409 VMFTG----VTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQ 453
V F +TG GK + +L LL A + +++ S T
Sbjct: 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQG---GAKVVVTTSRFSKQVTD 517
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.1 bits (64), Expect = 3.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLAS 433
N T K + ++++L+ S
Sbjct: 45 NKLFYITNADDSTKFQLVNDVMDELITS 72
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 3.8
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASN 434
V TG GVGKT + L +S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSG 29
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 384 DMMVPTIDTIRFGSIMEKLLLVNHP--VMFTGVTGVGKT 420
+ + ++T R ++E++ P +MF G G GKT
Sbjct: 105 EAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKT 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 28.5 bits (63), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKL 430
+H + GV+G GK+ VA + ++L
Sbjct: 8 HHIYVLMGVSGSGKSAVASEVAHQL 32
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP
complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 29.0 bits (66), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 404 LVNHP----VMFTGVTGVGKTVVARS 425
L HP + FTG T GK V+A +
Sbjct: 216 LTEHPLIEKISFTGGTSTGKKVMASA 241
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 28.4 bits (63), Expect = 4.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430
M+KL ++ TG GVGK+ + + +L
Sbjct: 1 MKKLYII------TGPAGVGKSTTCKRLAAQL 26
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 28.6 bits (63), Expect = 4.9
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 400 EKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGK 459
L +G G GK+ + + L+ T ++F T + T +
Sbjct: 21 RTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTL----LHFRNTTEAGATSGSRDKG 76
Query: 460 LDKRTKT 466
L + K
Sbjct: 77 LHGKLKA 83
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 5.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 412 TGVTGVGKTVVARSILNKLLASNTWAAL 439
+G G GK+ ++ + L A A +
Sbjct: 28 SGAPGSGKSTLSNPLAAALSAQGLPAEV 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription
activation, gene regulation, sigma54 activator, enhancer
binding protein, PSPF; 1.7A {Escherichia coli} PDB:
2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Length = 265
Score = 28.6 bits (65), Expect = 5.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 408 PVMFTGVTGVGKTVVARSI 426
PV+ G G GK ++A +
Sbjct: 31 PVLIIGERGTGKELIASRL 49
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 29.1 bits (66), Expect = 5.3
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 404 LVNHP----VMFTGVTGVGKTVVA 423
LVNHP V TG G+ V A
Sbjct: 223 LVNHPDVAKVSLTGSVPTGRKVAA 246
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate,
protein binding; NMR {Mycobacterium tuberculosis}
Length = 132
Score = 27.5 bits (61), Expect = 5.6
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 312 WSYLWAVGGNLTDESRDRFEAFAREQ---FTDEPNVSLGKDPDLRS 354
+ L A + + +EQ + V + +L +
Sbjct: 71 FEKLGADPELKSTGFARDLADYIQEQGWQTYGDVVVRFEQSSNLHT 116
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 28.4 bits (63), Expect = 5.8
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ TG GKT +++++ L
Sbjct: 8 IIVTGHPATGKTTLSQALATGL 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 28.6 bits (64), Expect = 5.8
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSAR 451
++F G G GKT ++ +L + + + +A S R
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA--SDER 101
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 5.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
V+ TGV GVG T ++ ++ L
Sbjct: 6 VVVTGVPGVGSTTSSQLAMDNL 27
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 28.7 bits (64), Expect = 6.0
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455
++ G G GK ++L + + T+S R E+
Sbjct: 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 28.3 bits (63), Expect = 6.2
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINF-----SAQTSSARTQEILEGKLDKR 463
++ TG+ GVGK+ +++ L K+L+ N + + S + +E ++ +
Sbjct: 7 IILTGLPGVGKSTFSKN-LAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65
Query: 464 TKTLLGAPLGKRLAVFVDDVN 484
+ L K V VDD N
Sbjct: 66 IDSAL-----KNYWVIVDDTN 81
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 6.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430
ME+ +N ++ TG G GKT +A I +L
Sbjct: 5 MEQPKGIN--ILITGTPGTGKTSMAEMIAAEL 34
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 28.7 bits (65), Expect = 6.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 398 IMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF------SAQTSSAR 451
+ E + + P +FT T A +I KL +NT+ AL + + A++
Sbjct: 210 LKEGAIKQDIPTLFTDSTE------AEAI--KL-FANTYLALRVAYFNELDSYAESQGLN 260
Query: 452 TQEILEG-KLDKR 463
+++I+EG LD R
Sbjct: 261 SKQIIEGVCLDPR 273
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 28.7 bits (64), Expect = 6.6
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 408 PVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDK--RTK 465
M G G+GKT A + +L + L N A S R++ +L +
Sbjct: 79 AAMLYGPPGIGKTTAAHLVAQEL----GYDILEQN--A--SDVRSKTLLNAGVKNALDNM 130
Query: 466 TLLG---------APLGKRLAVFVDDV-NMPKLETYGAQPPIELLRQ 502
+++G GK + +D+V M + G + R+
Sbjct: 131 SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 28.7 bits (65), Expect = 6.7
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 404 LVNHP----VMFTGVTGVGKTVVARS 425
L +HP V FTG GK V+ S
Sbjct: 228 LCHHPNVAKVSFTGSVPTGKKVMEMS 253
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 28.7 bits (65), Expect = 6.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 404 LVNHP----VMFTGVTGVGKTVVA 423
L HP V TG G+ +++
Sbjct: 232 LTGHPKVRMVSLTGSIATGEHIIS 255
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 28.7 bits (65), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 406 NHPV---MFTGVTGVGKTVVARS 425
P+ +F G TGVGKT +AR+
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARA 540
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC
AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC
CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1
d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Length = 513
Score = 28.5 bits (64), Expect = 7.8
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 12/36 (33%)
Query: 104 IREEFE---------EVILALFEKYVDPGLNFVRKF 130
+ E++L L E+Y L+ R
Sbjct: 85 LLSVLPAGPAPEGDAELVLRLLERY---DLHAFRLV 117
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 28.3 bits (64), Expect = 8.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 404 LVNHP----VMFTGVTGVGKTVVARS 425
L ++P FTG + VG+ V R+
Sbjct: 219 LTSNPDIDMFTFTGSSAVGREVGRRA 244
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 8.6
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTK 465
+ TG+ GVGK+ V + ++L + IN+ + + D+ K
Sbjct: 4 GIVTGIPGVGKSTVLA-KVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,932,735
Number of extensions: 552518
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1315
Number of HSP's successfully gapped: 97
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.9 bits)