RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17974
(583 letters)
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 33.7 bits (77), Expect = 0.042
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 400 EKLLLVNHPVMFTGVTGVGKTVVARSI 426
+K+ PV+ TG +GVGK VVAR I
Sbjct: 17 KKISCAECPVLITGESGVGKEVVARLI 43
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 33.2 bits (74), Expect = 0.081
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINF 443
VN G G+GKT +A+ + ++ + LT+
Sbjct: 45 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 83
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 32.6 bits (73), Expect = 0.11
Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 2/163 (1%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKT 466
V+ G G GK+ R++ L ++ +L + ++
Sbjct: 29 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTP 88
Query: 467 LLGAPLGKRLAVFVDDVNMPKLETYGAQPP--IELLRQFLDFGGLYDRDKMFWKTLQDVV 524
++ PLG V +++ + + G + L R + + + + + + ++
Sbjct: 89 VVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLL 148
Query: 525 LCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVR 567
R L+ R F L+ +P E L+ R
Sbjct: 149 DVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDR 191
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 32.3 bits (73), Expect = 0.15
Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 47/234 (20%)
Query: 346 LGKDPDLRSYFVSKDTKQLTPWTTITPIFTYDPTMPFFDMMVPTIDTIRFGSIMEKLLLV 405
L + + S D ++ W + + ++P +D++ + + K ++
Sbjct: 104 LDRMDIMFGSTGSADIEE---WMAG---------VAWLHCLLPKMDSVVYDFL--KCMVY 149
Query: 406 NHP----VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLD 461
N P +F G GKT +A ++L AL +N
Sbjct: 150 NIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLP----------------L 189
Query: 462 KRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPPIEL-----LRQFLD---FGGLYDRD 513
R LG + V +DV E+ + LR +LD L +
Sbjct: 190 DRLNFELG-VAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKH 248
Query: 514 KMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVR 567
+ + T + F + + + + R
Sbjct: 249 LNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKR 302
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 32.1 bits (71), Expect = 0.17
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFS 444
G G GKTV R + T + IN
Sbjct: 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 81
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.8 bits (68), Expect = 0.28
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTI 441
+H + GV+G GK+ VA + ++L A+
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 41
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.7 bits (68), Expect = 0.30
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKRTKTLL 468
V+ TGV GVG T ++ ++ L ++F + +E L D+ K
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEG-VNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 30.4 bits (67), Expect = 0.44
Identities = 22/129 (17%), Positives = 32/129 (24%), Gaps = 12/129 (9%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASN---TWAALTINFSAQTSSARTQEILEGKLDKRTK 465
V TG GVGKT + L +S L G ++
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 466 TLLGAPLGKRLAVFV---------DDVNMPKLETYGAQPPIELLRQFLDFGGLYDRDKMF 516
L P GKR + + +P L +D G +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 517 WKTLQDVVL 525
+ L
Sbjct: 124 FIQAVRQTL 132
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.3 bits (67), Expect = 0.64
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 4/153 (2%)
Query: 398 IMEKLLLVNHP--VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455
+++ V P + G G GKT + +I + + + ++
Sbjct: 22 LIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKL 81
Query: 456 LEGKLDKRTKTLLGAPLGKRLAVFVDDVNMPKLETYGAQPP-IELLRQFLDFGGLYDRDK 514
E + K ++ D +E G L G +
Sbjct: 82 YEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMY 141
Query: 515 MFWKTLQDVVLCTACAP-PGGGRMPLTPRFVRH 546
+ + L T P+T R
Sbjct: 142 VMAVPKINSYLGTIERYETMYADDPMTARATPK 174
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.77
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454
V+ GV GVGKT L + + + ++ TQ
Sbjct: 9 VLVVGVNGVGKTTTIAK-LGRYYQNLGKKVMFCAGDTFRAAGGTQL 53
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 29.6 bits (65), Expect = 0.78
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 6/32 (18%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKL 430
M+KL ++ TG GVGK+ + + +L
Sbjct: 1 MKKLYII------TGPAGVGKSTTCKRLAAQL 26
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 29.3 bits (64), Expect = 0.98
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLA 432
+ TG GK +AR++ L
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQ 32
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 30.1 bits (67), Expect = 0.98
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 14/70 (20%)
Query: 82 GIAGWTPYVKSWLNLLFDKV-PLIREEFEEV--------ILALFEKYVDPGLNFVRKFCA 132
G K + L K+ I + FEEV F + + P
Sbjct: 61 GEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFLQEIKP-----EAVAY 115
Query: 133 TAIHQMINLV 142
I + +
Sbjct: 116 ITIKTTLACL 125
>d2i0xa1 d.58.58.1 (A:1-84) Hypothetical protein PF1117
{Pyrococcus furiosus [TaxId: 2261]}
Length = 84
Score = 27.7 bits (62), Expect = 1.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 26 NNAHLESILKSLESYLDVKRSAFPRFYFLSNEELLEILGQARNP 69
A E I + L+ +D + S Y L + E LG +NP
Sbjct: 38 TLAEFERIKEGLKKIID-ENSDSVIIYKLRSMPPRETLGIEKNP 80
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.2 bits (64), Expect = 1.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
+ TG+ GVGK+ V + L
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEIL 25
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 28.8 bits (63), Expect = 1.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ G + GK+ + R + + L
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVL 27
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.8 bits (63), Expect = 1.5
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ +G G GK+ +A ++ N
Sbjct: 7 LLLSGHPGSGKSTIAEALANLP 28
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 1.7
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 408 PVM-FTGVTGVGKTVVARSILNKLLASNTWAALTIN 442
P++ F +G GKT + + ++ L A L +
Sbjct: 3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 38
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 28.2 bits (61), Expect = 1.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
+ G G GK+ + R + +L
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQL 26
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 2.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 407 HPVMFTGVTGVGKT 420
+ +M GV G GK
Sbjct: 13 YVIMLVGVQGTGKA 26
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.1 bits (62), Expect = 2.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 407 HPVMFTGVTGVGKT 420
++ GV GVGKT
Sbjct: 10 FVILMVGVNGVGKT 23
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.2 bits (62), Expect = 2.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 407 HPVMFTGVTGVGKT 420
+M GV G GKT
Sbjct: 12 FVIMVVGVNGTGKT 25
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.4 bits (62), Expect = 2.2
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLA 432
++ G+ GKT +++ + L
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNF 28
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 28.0 bits (61), Expect = 2.5
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKL 430
P+ G G G T V R + L
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARAL 26
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.2 bits (62), Expect = 2.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLAS 433
+ F+G G GK+ + I N L+
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEK 54
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 2.7
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 409 VMFTGVTGVGKT 420
G+ G GKT
Sbjct: 13 WFLVGLQGSGKT 24
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.4 bits (59), Expect = 2.9
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 399 MEKLLLVNHPVMFTGVTGVGKTVVARSILNKLL 431
M+K+ ++ G G GK+ AR + K
Sbjct: 1 MKKI------ILTIGCPGSGKSTWAREFIAKNP 27
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 2.9
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQE 454
+ P++ +G +G GK+ ++L KL A + + S+ T + R E
Sbjct: 1 SRPIVISGPSGTGKS----TLLKKLFAEYP-DSFGFSVSSTTRTPRAGE 44
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 27.7 bits (60), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
V TG++G GKT V+ ++ L
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYL 43
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 3.5
Identities = 8/48 (16%), Positives = 16/48 (33%)
Query: 393 IRFGSIMEKLLLVNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALT 440
+ + ++ G TG GK+V+ R + L +
Sbjct: 37 VTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV 84
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 27.4 bits (59), Expect = 4.0
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEI 455
++ G G GK ++L + + T+S R E+
Sbjct: 34 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 82
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.6 bits (61), Expect = 4.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 405 VNHPVM-FTGVTGVGKTVVARSILNKLLASNTWAAL 439
HP++ TG +G G + V + A
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 37
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 122
Score = 26.6 bits (59), Expect = 4.5
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 14/55 (25%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSARTQEILEGKLDKR 463
++ V + ++ ++L+ L Q R +I E
Sbjct: 9 IVLGNSLTVSREQLSIALLSTFL--------------QFGGGRYYKIFEHNNKTE 49
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 4.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLA 432
+ +G T GK+ V I+ L
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQ 28
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 27.2 bits (60), Expect = 5.4
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 97 LFDKVPLIREEFEEVILALFEKY----VDPGLNFVRKFCA-----TAIHQMI-------N 140
+ D L+ +E +L L E+Y VDP L KF T H ++
Sbjct: 64 IIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKA 123
Query: 141 LVPSCAAF--ITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFE 193
+ A + + GY L+ P+ + G + E V+ G
Sbjct: 124 KLKEIVADSDVMLKEGYE---NFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVY 175
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 27.0 bits (58), Expect = 5.5
Identities = 3/25 (12%), Positives = 11/25 (44%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNK 429
+H ++ + G+G + ++
Sbjct: 23 GHHALLIQALPGMGDDALIYALSRY 47
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.0 bits (58), Expect = 5.9
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 409 VMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSAQTSSAR 451
+ G+ GK+ + + +N+L + L S +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYK 74
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 6.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ TG G GKT +A I +L
Sbjct: 8 ILITGTPGTGKTSMAEMIAAEL 29
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.8 bits (58), Expect = 6.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 407 HPVMFTGVTGVGKTVVARSILNKL 430
++ G G+GKT +A I ++L
Sbjct: 36 EHLLLFGPPGLGKTTLAHVIAHEL 59
>d2ogka1 d.77.1.2 (A:4-144) Hypothetical protein AF2318
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 141
Score = 26.3 bits (58), Expect = 6.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 557 EDTLKVIFKVRTSPGKQEGTSSILAEA 583
D + V ++ T P K+E E
Sbjct: 113 GDPIAVKLRLVTYPSKREKVIEFAREL 139
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 27.0 bits (59), Expect = 6.8
Identities = 13/95 (13%), Positives = 29/95 (30%)
Query: 145 CAAFITMNPGYAGRTELPDNLKALFRPMAMMVPDYGLIAEVVLYSEGFESSKNLAQKMVN 204
AF M + PD LK + + + G + + + L+
Sbjct: 71 ITAFNDMLSAHQPYETYPDLLKKACQEVGSVAQVAGGVPAMCDGVTQGQPGMELSLLSRE 130
Query: 205 MYKLCSEQLSQQDHYDFGMRAVKSVLVMAGSLKRA 239
+ + + + +D + ++ G L A
Sbjct: 131 VIAMATAVGLSHNMFDGALLLGICDKIVPGLLIGA 165
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 26.4 bits (57), Expect = 7.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++ TG GVGKT + + + +K
Sbjct: 7 ILLTGTPGVGKTTLGKELASKS 28
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
PAPL {Vaccinia virus [TaxId: 10245]}
Length = 468
Score = 27.1 bits (60), Expect = 7.7
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 354 SYFVSKDTKQLTPWTTITPIFTYDPTMPFFDM--MVPTID------------TIRFGSIM 399
S+ + +DT + P I I+ DPT +M M ID R +++
Sbjct: 243 SFNIRQDTMNVVPKIFIDNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATML 302
Query: 400 EKLLLVNHPVMFTG 413
E + H ++F G
Sbjct: 303 E-YVRYTHGIVFDG 315
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.1 bits (56), Expect = 7.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
+ G+ G GK+ + R + L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKAL 25
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.3 bits (57), Expect = 7.9
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
+ TG++ GK+ +A + ++L
Sbjct: 27 IWLTGLSASGKSTLAVELEHQL 48
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.0 bits (56), Expect = 8.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 409 VMFTGVTGVGKTVVARSILNKL 430
++F G G GK+ +AR++ L
Sbjct: 3 IVFIGFMGSGKSTLARALAKDL 24
>d1xeaa2 d.81.1.5 (A:123-266) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 144
Score = 25.9 bits (56), Expect = 8.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 367 WTTITPIFTYDPTMPFFDMMVPTIDTIRF 395
W D FD + +D++
Sbjct: 27 WEKHRHALPGDIRTFVFDDFIHPLDSVNL 55
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.4 bits (57), Expect = 8.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 403 LLVNHP--VMFTGVTGVGKTVVARSILNKL 430
LL +P V+ G G GK+ + L
Sbjct: 9 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 38
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 27.0 bits (59), Expect = 8.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLA 432
N ++ +G +G GKTV A+ +
Sbjct: 94 NQSIIVSGESGAGKTVSAKYAMRYFAT 120
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.0 bits (59), Expect = 8.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 406 NHPVMFTGVTGVGKTVVARSILNKLLA 432
N ++ TG +G GKT + ++ L +
Sbjct: 125 NQSLLITGESGAGKTENTKKVIQYLAS 151
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 26.2 bits (57), Expect = 9.1
Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 19/181 (10%)
Query: 405 VNHPVMFTGVTGVGKTVVARSILNKLLASNTWAALTINFSA---QTSSARTQEILEGKLD 461
++H +F+G GVGKT +AR + L A + R +++E
Sbjct: 33 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAA 92
Query: 462 KRTK----------TLLGAPLGKRLAVFVDDV-NMPKLETYGAQPPIELLRQFLDFGGLY 510
RTK G+ +D+V + + +E + + F
Sbjct: 93 SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 152
Query: 511 DRDKMFWKTLQDVVLCTACAPPGGGRMPLTPRFVRHFGLLSLPSPTEDTLKVIFKVRTSP 570
+ T+ L ++ + + ++ L+++ R +
Sbjct: 153 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLL--ARAAE 207
Query: 571 G 571
G
Sbjct: 208 G 208
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0537 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,138,636
Number of extensions: 102028
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 53
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)