Query psy17977
Match_columns 362
No_of_seqs 141 out of 1189
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:11:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 100.0 2.7E-73 5.9E-78 601.5 24.5 330 6-338 222-604 (707)
2 COG5245 DYN1 Dynein, heavy cha 99.5 5E-14 1.1E-18 150.9 6.8 179 10-196 2975-3162(3164)
3 PF06115 DUF956: Domain of unk 31.6 8 0.00017 31.7 -1.7 20 95-114 47-66 (118)
4 COG3693 XynA Beta-1,4-xylanase 22.8 1.2E+02 0.0025 29.7 4.1 30 322-351 216-245 (345)
5 COG0089 RplW Ribosomal protein 22.4 1.1E+02 0.0024 24.1 3.3 26 329-355 22-47 (94)
6 KOG0936|consensus 22.3 88 0.0019 26.9 2.9 63 62-125 66-140 (182)
7 PRK14548 50S ribosomal protein 18.1 1.6E+02 0.0035 22.7 3.3 26 330-356 23-48 (84)
8 COG5639 Uncharacterized conser 17.4 1.3E+02 0.0029 22.5 2.5 24 6-29 12-35 (77)
9 COG5227 SMT3 Ubiquitin-like pr 17.3 3.6E+02 0.0078 21.2 5.0 46 311-356 47-102 (103)
10 PRK08208 coproporphyrinogen II 16.7 1.1E+03 0.023 23.7 9.8 79 273-351 69-150 (430)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=100.00 E-value=2.7e-73 Score=601.49 Aligned_cols=330 Identities=40% Similarity=0.781 Sum_probs=230.9
Q ss_pred CCccceEecCChhHHHHHHHHHhccCHHHHhccCcchhhhhHHHHHHHHHHHHHHHhhhCCCCcccccccChhhHHHHHH
Q psy17977 6 SNTTPLVFVLSPGIRSNLKRSLATIDEQVFNTHSLEGAWRKMVFGVCFFHAVIQERKKFGPLGWNILYEFNDSDLECALG 85 (362)
Q Consensus 6 ~~s~kv~~E~P~glk~nl~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~ygplGwn~~Y~F~~sDl~~s~~ 85 (362)
.+|+||+||+|+|+|+||+++|+.++++.++.+.++..+++++|+||||||||+||++|||+|||++|+||++||.+|++
T Consensus 222 ~~s~kv~~E~p~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~ 301 (707)
T PF03028_consen 222 QSSIKVTYEPPPGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALD 301 (707)
T ss_dssp HCSEEEEE---SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHH
T ss_pred HcccceeeCChhHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHH
Confidence 57899999999999999999999988888888878889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC---CCCChHHHHHhhhcccccccccChhhHHHHHHHHHHhcCccCCCCCccccC-CCCccCCCCCCCCCHHH
Q psy17977 86 TLKMYCAQ---DTIPWEALTYTFGEVNYGGRVTDYWDQRTLKTILLTYFGFHTLAPDYVYSA-SGTYYCPETEECNTLEM 161 (362)
Q Consensus 86 ~l~~~~~~---~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ll~~~f~~~~~~~~~~l~~-~~~~~~P~~~~~~~~~~ 161 (362)
++..+++. +.+||++|+|++|+++|||||+|+||+|+|++|+++||+++++++++.+.. ...+.+|. ..++++
T Consensus 302 ~l~~~~~~~~~~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~l~~~~~~~~~P~---~~~~~~ 378 (707)
T PF03028_consen 302 ILDNWLDESSPESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQLSPDSGSYSIPD---SNSLED 378 (707)
T ss_dssp HHHHHHHHCSCCCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-EEET-TTTEE-------SSHHH
T ss_pred HHHHHHhhccccCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhhcccCCCCccCCc---cccHHH
Confidence 99998886 689999999999999999999999999999999999999999999998876 34567898 889999
Q ss_pred HHHHHHhCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCC--CCCCChHHHHHHHHHHHHHhccccCCccc
Q psy17977 162 YREFVEELPIIEEPEIFGMHDNANIAFQMKETKNVIQTIMEVQPREGGS--SEGKSPDELVLEQCDSVIERIKTKIDKDN 239 (362)
Q Consensus 162 ~~~~I~~lP~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~i~~~~~~~--~~~~~~~~~~~~~~~~~l~~lP~~~~~~~ 239 (362)
|.+||++||..++|++||||+||++.+++.++++++++|+.++++.... +.+.+.++.+.+.++++++++|..++.+.
T Consensus 379 ~~~~i~~lp~~~~p~~~GL~~na~~~~~~~~s~~ll~~l~~l~~~~~~~~~~~~~s~~~~~~~~i~~l~~~lp~~~~~~~ 458 (707)
T PF03028_consen 379 YIEWIEQLPDEDPPEWFGLPPNAEISLQQQESRELLSSLLSLQPRESSSSGGSSKSREEQVLSLIKELLEKLPQLFPIEE 458 (707)
T ss_dssp HHHHHCTS-SS--CCCCTS-TTHHHHHHHHHHHHHHHHHHHCCCTTT----------HHHHCT-----------------
T ss_pred HHHHHHhCCCCCCccccCCCccHHHHHHHHHHHHHHhhhhhcccccccccccccccchhHHHHHHHHHHHHhhccCCHHH
Confidence 9999999999999999999999999999999999999999999887653 22334567778889999999998777654
Q ss_pred Cch---------hh---h---------------------hcCcch--------hH----Hhh-cCccccccccCCCCCCH
Q psy17977 240 AHP---------SL---L---------------------EKGNRT--------CQ----VYL-IVPKLWSAKCYPSLKSL 273 (362)
Q Consensus 240 ~~~---------~l---~---------------------~~~~~~--------e~----l~~-~VP~~W~~~~~~s~~~l 273 (362)
... .+ + .+..+| +. |+. +||+.|.+++||+.+++
T Consensus 459 ~~~~~~~~~~~~Pl~~fl~qE~~~~~~LL~~I~~sL~~L~~~lkG~~~~t~~l~~l~~~L~~~~VP~~W~~~~~~s~~~l 538 (707)
T PF03028_consen 459 VKSKRPAENSNDPLNRFLEQEIERFNKLLQIIRQSLQELQKALKGEIKMTNELEALAQSLLKGQVPKSWLRYSYPSPKPL 538 (707)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTS--GGG--S---SS--H
T ss_pred HhccCCccccCCceeeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhCCCChhHHhcCCCCCCCH
Confidence 321 11 0 011122 22 333 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCceEecCCccChhHHHHHHHHHHHHHhCCCCcceEEEEEEecc
Q psy17977 274 GSWIKDLALRIDFIAVWLNH-GPPVSFWISGFFFPQGFMTGCLQTHARRHDIAIDTLKIDFQMTNV 338 (362)
Q Consensus 274 ~~wi~dL~~R~~~l~~w~~~-g~p~~~wLs~ff~P~~FLtA~~Q~~AR~~~~plD~L~l~~~v~~~ 338 (362)
.+|++||.+|++|+++|... |.|.+|||||||||++||||+||++||++++|+|+|+|.++|++.
T Consensus 539 ~~Wl~dL~~Rv~~l~~w~~~~~~p~~~wLs~ff~P~aFLtAlrQ~~AR~~~~~ld~L~l~~~v~~~ 604 (707)
T PF03028_consen 539 SSWLQDLIKRVEQLQRWASNSGQPKSFWLSGFFNPQAFLTALRQEYARKNKIPLDQLTLSFEVTSS 604 (707)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------B-GGGSS-HHHHHHHHHHHHHHHTT-----EE--EE----
T ss_pred HHHHHHHHHHHHHHHHHHhccCCceEEecccccChHHHHHHHHHHHHHhcCcCchhcceeEEEEec
Confidence 99999999999999999999 999999999999999999999999999999999999999999977
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.47 E-value=5e-14 Score=150.92 Aligned_cols=179 Identities=15% Similarity=0.045 Sum_probs=138.8
Q ss_pred ceEecCChhHHHHHHHHHhccCHHHHhccCcchhhhhHHHHHHHHHHHHHHHhhhCCCCcccccccChhhHHHHHHHHHH
Q psy17977 10 PLVFVLSPGIRSNLKRSLATIDEQVFNTHSLEGAWRKMVFGVCFFHAVIQERKKFGPLGWNILYEFNDSDLECALGTLKM 89 (362)
Q Consensus 10 kv~~E~P~glk~nl~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~ygplGwn~~Y~F~~sDl~~s~~~l~~ 89 (362)
.++++.-||++.++...+.. . .+.....+...-++.|.|+|+||.+.+|-.++|-|||.+|.|+++||..+.++|.+
T Consensus 2975 sfv~~~~p~~~~~~~dL~e~-~--~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df~f~T~~L~N 3051 (3164)
T COG5245 2975 SFVSSTYPETGCGYADLVEI-D--RYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKN 3051 (3164)
T ss_pred hhhhccCCcccccHHHHHhc-C--cccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchHHHHHHHHHH
Confidence 35788999999999998853 2 12222223444579999999999999999999999999999999999999999988
Q ss_pred hhcC---CCCChHHHHHhhhcccccccccChhhHHHHHHHHHHhcCccCCCCCccccCCCCccCCCCC------CCCCHH
Q psy17977 90 YCAQ---DTIPWEALTYTFGEVNYGGRVTDYWDQRTLKTILLTYFGFHTLAPDYVYSASGTYYCPETE------ECNTLE 160 (362)
Q Consensus 90 ~~~~---~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ll~~~f~~~~~~~~~~l~~~~~~~~P~~~------~~~~~~ 160 (362)
.+-. +.+||...|.+|..|+||||++-..|..+++.||..+++.+.-. +..+ ....|++. +.....
T Consensus 3052 Il~~nhln~~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~~~s---Qi~~--~V~~~dp~l~~~~~ee~~rs 3126 (3164)
T COG5245 3052 ILFLNHLNARKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHETSS---QILA--SVPGGDPELVKFHMEEMCRS 3126 (3164)
T ss_pred HHhccccccccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCcccc---hhcc--CCcCCChHHHHhhHHHHHHH
Confidence 6543 78999999999999999999999999999999999999986411 1111 11112100 011222
Q ss_pred HHHHHHHhCCCCCCCccccCCccHHHHHHHHHHHHH
Q psy17977 161 MYREFVEELPIIEEPEIFGMHDNANIAFQMKETKNV 196 (362)
Q Consensus 161 ~~~~~I~~lP~~~~p~~~GL~~na~~~~~~~~~~~~ 196 (362)
.-...|..+|+...|.|+-+|.+.+..+...+++++
T Consensus 3127 Sa~~vigqlpd~~l~~wl~~p~~s~~~~~~vy~s~i 3162 (3164)
T COG5245 3127 SAFGVIGQLPDLALCAWLMGPCDSEYLKAIVYSSRI 3162 (3164)
T ss_pred hhhhhcccCcccccchhhcCchhHHHHHHHHHHHhh
Confidence 233456789999999999999999998888777665
No 3
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=31.58 E-value=8 Score=31.75 Aligned_cols=20 Identities=35% Similarity=0.944 Sum_probs=18.1
Q ss_pred CCChHHHHHhhhcccccccc
Q psy17977 95 TIPWEALTYTFGEVNYGGRV 114 (362)
Q Consensus 95 ~ipw~~l~~li~~iiYGGrv 114 (362)
+|||+.+.+..+++.++||-
T Consensus 47 QIPW~eI~~V~a~V~fkgk~ 66 (118)
T PF06115_consen 47 QIPWEEIDYVIASVSFKGKW 66 (118)
T ss_pred EeChhheeEEEEEEEECCCE
Confidence 59999999999999998873
No 4
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=22.84 E-value=1.2e+02 Score=29.66 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=11.7
Q ss_pred hCCCCcceEEEEEEecccCCHHHHHHHHHh
Q psy17977 322 HDIAIDTLKIDFQMTNVVLSQEEIELAHRK 351 (362)
Q Consensus 322 ~~~plD~L~l~~~v~~~~~~~~~~~~~~~~ 351 (362)
.|.|||-+.++.++.-...+.+....+.++
T Consensus 216 kG~pIDgiG~QsH~~~~~~~~~~~~~a~~~ 245 (345)
T COG3693 216 KGAPIDGIGIQSHFSGDGPSIEKMRAALLK 245 (345)
T ss_pred CCCCccceeeeeeecCCCCCHHHHHHHHHH
Confidence 344444444444433333333333333333
No 5
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=1.1e+02 Score=24.13 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=21.9
Q ss_pred eEEEEEEecccCCHHHHHHHHHhhcCc
Q psy17977 329 LKIDFQMTNVVLSQEEIELAHRKAGGE 355 (362)
Q Consensus 329 L~l~~~v~~~~~~~~~~~~~~~~~~~~ 355 (362)
=++.|.|... .+..||..++|++||=
T Consensus 22 nk~vF~V~~~-AtK~~IK~AvE~lF~V 47 (94)
T COG0089 22 NKYVFIVDPD-ATKPEIKAAVEELFGV 47 (94)
T ss_pred CEEEEEECCC-CCHHHHHHHHHHHhCC
Confidence 4677888877 7899999999999984
No 6
>KOG0936|consensus
Probab=22.29 E-value=88 Score=26.95 Aligned_cols=63 Identities=14% Similarity=0.337 Sum_probs=39.7
Q ss_pred hhhCCCCcccccccChhhHHHHHHHHHHhhcC------------CCCChHHHHHhhhcccccccccChhhHHHHHH
Q psy17977 62 KKFGPLGWNILYEFNDSDLECALGTLKMYCAQ------------DTIPWEALTYTFGEVNYGGRVTDYWDQRTLKT 125 (362)
Q Consensus 62 ~~ygplGwn~~Y~F~~sDl~~s~~~l~~~~~~------------~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ 125 (362)
|.|..+=|--..|=++++|- .++.++.|++. --+.|+.+++++.|++.||-|-...=-++..+
T Consensus 66 rhYATLYFvfvvD~sEsEL~-iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~a 140 (182)
T KOG0936|consen 66 RHYATLYFVFVVDSSESELG-ILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAA 140 (182)
T ss_pred heeeeEEEEEEEcCCcchhH-HHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHH
Confidence 34444444334455666663 24555555442 23579999999999999999876655555444
No 7
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=18.09 E-value=1.6e+02 Score=22.66 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.6
Q ss_pred EEEEEEecccCCHHHHHHHHHhhcCcc
Q psy17977 330 KIDFQMTNVVLSQEEIELAHRKAGGEE 356 (362)
Q Consensus 330 ~l~~~v~~~~~~~~~~~~~~~~~~~~~ 356 (362)
++.|.|... .|.-||+.++|++||-.
T Consensus 23 ~y~F~V~~~-anK~eIK~AvE~lf~Vk 48 (84)
T PRK14548 23 KLTFIVDRR-ATKPDIKRAVEELFDVK 48 (84)
T ss_pred EEEEEECCC-CCHHHHHHHHHHHhCCc
Confidence 677788766 78999999999999753
No 8
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=17.45 E-value=1.3e+02 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=19.9
Q ss_pred CCccceEecCChhHHHHHHHHHhc
Q psy17977 6 SNTTPLVFVLSPGIRSNLKRSLAT 29 (362)
Q Consensus 6 ~~s~kv~~E~P~glk~nl~~~~~~ 29 (362)
...+|+|+|-|..+++-|.+.-.-
T Consensus 12 ~~pvKlTv~~pa~L~~~L~~Yaai 35 (77)
T COG5639 12 RTPVKLTVELPASLHRALDDYAAI 35 (77)
T ss_pred CCceeEEEecChhHHHHHHHHHHH
Confidence 457999999999999999876543
No 9
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=17.27 E-value=3.6e+02 Score=21.21 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCcceEEEEEEeccc----------CCHHHHHHHHHhhcCcc
Q psy17977 311 MTGCLQTHARRHDIAIDTLKIDFQMTNVV----------LSQEEIELAHRKAGGEE 356 (362)
Q Consensus 311 LtA~~Q~~AR~~~~plD~L~l~~~v~~~~----------~~~~~~~~~~~~~~~~~ 356 (362)
+.-++-.+||..+-.++.|.|-|.=.+.- -+-|+||+..+.++|-+
T Consensus 47 f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~t 102 (103)
T COG5227 47 FKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGAT 102 (103)
T ss_pred HHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCcc
Confidence 45677789999999999999877432221 12367888888888854
No 10
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=16.68 E-value=1.1e+03 Score=23.72 Aligned_cols=79 Identities=13% Similarity=0.210 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEecCC---ccChhHHHHHHHHHHHHHhCCCCcceEEEEEEecccCCHHHHHHHH
Q psy17977 273 LGSWIKDLALRIDFIAVWLNHGPPVSFWISG---FFFPQGFMTGCLQTHARRHDIAIDTLKIDFQMTNVVLSQEEIELAH 349 (362)
Q Consensus 273 l~~wi~dL~~R~~~l~~w~~~g~p~~~wLs~---ff~P~~FLtA~~Q~~AR~~~~plD~L~l~~~v~~~~~~~~~~~~~~ 349 (362)
...|+..|.+-++.+..........++-++| +..|...|..+.....+..++......+.++..+...+.|.++.+.
T Consensus 69 ~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~ 148 (430)
T PRK08208 69 IDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLA 148 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHH
Confidence 4678888888877665443322334555554 3345566666666655555544334566777777777888787776
Q ss_pred Hh
Q psy17977 350 RK 351 (362)
Q Consensus 350 ~~ 351 (362)
+.
T Consensus 149 ~~ 150 (430)
T PRK08208 149 AR 150 (430)
T ss_pred Hc
Confidence 53
Done!