Query psy17977
Match_columns 362
No_of_seqs 141 out of 1189
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:11:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 100.0 7.7E-76 2.6E-80 679.4 21.5 328 6-338 2746-3144(3245)
2 4akg_A Glutathione S-transfera 100.0 8.2E-47 2.8E-51 436.5 14.2 190 6-204 2493-2692(2695)
3 2ql8_A Putative redox protein; 38.6 62 0.0021 25.9 6.1 49 304-352 45-117 (143)
4 1ukk_A Osmotically inducible p 28.7 1.5E+02 0.005 23.5 6.8 49 304-352 43-119 (142)
5 1n2f_A Organic hydroperoxide r 26.9 1.7E+02 0.006 23.0 6.9 49 304-352 46-120 (142)
6 3q5w_A Protein CUT8; proteasom 26.8 49 0.0017 29.5 3.6 81 76-176 90-177 (245)
7 1zb9_A OHR, organic hydroperox 25.4 1.9E+02 0.0066 22.8 6.9 49 304-352 47-121 (143)
8 1usp_A Organic hydroperoxide r 24.3 2.1E+02 0.0072 22.3 6.9 49 304-352 43-117 (139)
9 1qwi_A OSMC, osmotically induc 22.3 2.4E+02 0.008 22.2 6.8 49 304-352 45-121 (143)
10 3r8s_T 50S ribosomal protein L 19.6 1E+02 0.0034 23.2 3.6 25 330-355 29-53 (93)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=100.00 E-value=7.7e-76 Score=679.45 Aligned_cols=328 Identities=23% Similarity=0.450 Sum_probs=249.2
Q ss_pred CCccceEecCChhHHHHHHHHHhccCHHHHhccCcchhhhhHHHHHHHHHHHHHHHhhhCCCCcccccccChhhHHHHHH
Q psy17977 6 SNTTPLVFVLSPGIRSNLKRSLATIDEQVFNTHSLEGAWRKMVFGVCFFHAVIQERKKFGPLGWNILYEFNDSDLECALG 85 (362)
Q Consensus 6 ~~s~kv~~E~P~glk~nl~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~ygplGwn~~Y~F~~sDl~~s~~ 85 (362)
.+|+|||+|||+|||+||+|+|..++++.+.. ++..|++|+|+||||||||+|||+|||+|||++|+||++||++|++
T Consensus 2746 q~siKit~EpP~GlkaNl~rs~~~~~~~~~~~--~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~ 2823 (3245)
T 3vkg_A 2746 RMSNVFSYENPPGVKANLLHTFIGIPATRMDK--QPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALD 2823 (3245)
T ss_dssp HTSEECCBCCCSSHHHHHHHHHTTSCHHHHTS--SSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHH
T ss_pred HhhhHheeCCChhHHHHHHHHHHhCCHHHhcc--CcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHH
Confidence 47999999999999999999999999887754 4678899999999999999999999999999999999999999999
Q ss_pred HHHHhhcC----------CCCChHHHHHhhhcccccccccChhhHHHHHHHHHHhcCccCCCCCccccCCCCccCCCCCC
Q psy17977 86 TLKMYCAQ----------DTIPWEALTYTFGEVNYGGRVTDYWDQRTLKTILLTYFGFHTLAPDYVYSASGTYYCPETEE 155 (362)
Q Consensus 86 ~l~~~~~~----------~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ll~~~f~~~~~~~~~~l~~~~~~~~P~~~~ 155 (362)
+|++|++. +.|||++|||++|+|+|||||||+||||+|++|+++||++++++++|.+++.+.|.+|.
T Consensus 2824 ~l~~~l~~~~~~~~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~~~~~~~~~~P~--- 2900 (3245)
T 3vkg_A 2824 SIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFPLVPSIGLSVPE--- 2900 (3245)
T ss_dssp HHHHHHHHHSTTCSCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCEEEGGGTEECCC---
T ss_pred HHHHHHHHhcccccccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCcccCCCCCCCCCCC---
Confidence 99999874 47999999999999999999999999999999999999999999999988766677898
Q ss_pred CCCHHHHHHHHHhCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCCC----------------CCCChHHH
Q psy17977 156 CNTLEMYREFVEELPIIEEPEIFGMHDNANIAFQMKETKNVIQTIMEVQPREGGSS----------------EGKSPDEL 219 (362)
Q Consensus 156 ~~~~~~~~~~I~~lP~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~i~~~~~~~~----------------~~~~~~~~ 219 (362)
..++++|.+||++||..++|++||||+||+++++.++++.++++|+.+||+..+++ ++..+++.
T Consensus 2901 ~~~~~~y~~~I~~LP~~~~P~~fGLh~NA~i~~~~~~s~~l~~~ll~lq~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 2980 (3245)
T 3vkg_A 2901 GTTRAHFMKWIEALPEISTPIWLGLPENAESLLLSNKARKMINDLQKMQSSEEDGEDDQVSGSSKKESSSSSSEDKGKAK 2980 (3245)
T ss_dssp CSSHHHHHHHHTTSCSCCCGGGGTSCTTHHHHHHHHHHHHHHHHHHHHHHTTTC---------------CHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhCCCCCCccccCCChhHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccccccccccCCCcHHH
Confidence 88999999999999999999999999999999999999999999999999764321 01123455
Q ss_pred HHHHHHHHHHhccccCCcccC-----chhh--------------h----------hcCcch--------hHH----hh-c
Q psy17977 220 VLEQCDSVIERIKTKIDKDNA-----HPSL--------------L----------EKGNRT--------CQV----YL-I 257 (362)
Q Consensus 220 ~~~~~~~~l~~lP~~~~~~~~-----~~~l--------------~----------~~~~~~--------e~l----~~-~ 257 (362)
+.+++++++++||+.++.... ..++ + .+..+| +++ +. +
T Consensus 2981 v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L~~aikG~i~mS~~le~l~~sl~~~~ 3060 (3245)
T 3vkg_A 2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANLLELISGNIKSTNYLRSLTTSISKGI 3060 (3245)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCCcCCHHHHHHHHHHHcCC
Confidence 788999999999998874221 0110 0 011223 333 33 9
Q ss_pred CccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhc--CCCceEecCCccChhHHHHHHHHHHHHHhCCCCcceEE-EEE
Q psy17977 258 VPKLWSAKCYPSLKSLGSWIKDLALRIDFIAVWLNH--GPPVSFWISGFFFPQGFMTGCLQTHARRHDIAIDTLKI-DFQ 334 (362)
Q Consensus 258 VP~~W~~~~~~s~~~l~~wi~dL~~R~~~l~~w~~~--g~p~~~wLs~ff~P~~FLtA~~Q~~AR~~~~plD~L~l-~~~ 334 (362)
||+.|.+.+|||.++|++|++||.+|++|++.|+.. |.|.+|||||||||++||||+||++||+++||+|+|+| .++
T Consensus 3061 VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~~~~~p~~~WLsgff~Pq~FLTA~~Q~~ARk~~~plD~l~l~~~~ 3140 (3245)
T 3vkg_A 3061 VPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVWLGGLLNPEAYITATRQSASQLNGWSLENLRLHASS 3140 (3245)
T ss_dssp -----CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC-------CCGGGSSCHHHHHHHHHHHHHHHTC------CCCBC-
T ss_pred CchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEecCCCcchHHHHHHHHHHHHHHhCCCCccceeeeEE
Confidence 999999999999999999999999999999999997 58999999999999999999999999999999999999 999
Q ss_pred Eecc
Q psy17977 335 MTNV 338 (362)
Q Consensus 335 v~~~ 338 (362)
|++.
T Consensus 3141 V~~~ 3144 (3245)
T 3vkg_A 3141 LGKI 3144 (3245)
T ss_dssp ----
T ss_pred EecC
Confidence 9854
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=100.00 E-value=8.2e-47 Score=436.49 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=170.9
Q ss_pred CCccceEecCChhHHHHHHHHHhccCHHHHhccCcchhhhhHHHHHHHHHHHHHHHhhhCCCCcccccccChhhHHHHHH
Q psy17977 6 SNTTPLVFVLSPGIRSNLKRSLATIDEQVFNTHSLEGAWRKMVFGVCFFHAVIQERKKFGPLGWNILYEFNDSDLECALG 85 (362)
Q Consensus 6 ~~s~kv~~E~P~glk~nl~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~ygplGwn~~Y~F~~sDl~~s~~ 85 (362)
.+|+|||+|||+|||+||+|+|. ++.++.|.++..|++++|+||||||||+|||+|||+|||++|+||++||++|++
T Consensus 2493 q~s~K~t~EpP~Glkanl~r~~~---~~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~ 2569 (2695)
T 4akg_A 2493 QRTDRFVYEDIPGILDTVKDLWG---SQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASV 2569 (2695)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHH---HGGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHH
T ss_pred hccceeeecCChhHHHHHHHHhh---hHHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHH
Confidence 36899999999999999999994 456777778889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC---CCCChHHHHHhhhcccccccccChhhHHHHHHHHHHhcCccCCCCCccccCCCCcc-----CCCCCCCC
Q psy17977 86 TLKMYCAQ---DTIPWEALTYTFGEVNYGGRVTDYWDQRTLKTILLTYFGFHTLAPDYVYSASGTYY-----CPETEECN 157 (362)
Q Consensus 86 ~l~~~~~~---~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ll~~~f~~~~~~~~~~l~~~~~~~-----~P~~~~~~ 157 (362)
+|++|++. +.|||++|||++|+|+|||||||+||||+|++|+++||++ +++|.+++...+. .|. ..
T Consensus 2570 ~l~~~l~~~~~~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~---p~ 2643 (2695)
T 4akg_A 2570 YLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDNLQIVPGVRIPQPLLQQSE---EE 2643 (2695)
T ss_dssp HHHHHHHHSCSCSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSBCCSSSSCCCBCCCTTCCH---HH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCCcccCCCcCcCCCCccCCC---CC
Confidence 99999976 5799999999999999999999999999999999999999 5566665431111 111 12
Q ss_pred CHHHHHHHHHhC--CCCCCCccccCCccHHHHHHHHHHHHHHHHHHHhc
Q psy17977 158 TLEMYREFVEEL--PIIEEPEIFGMHDNANIAFQMKETKNVIQTIMEVQ 204 (362)
Q Consensus 158 ~~~~~~~~I~~l--P~~~~p~~~GL~~na~~~~~~~~~~~~l~~l~~i~ 204 (362)
++++|.+||++| |..++|++||||+||+++++.++++.++++++.++
T Consensus 2644 ~~~~y~~~i~~l~~P~~~~p~~fGlh~NA~i~~~~~~~~~~~~~il~i~ 2692 (2695)
T 4akg_A 2644 ERARLTAILSNTIEPADSLSSWLQLPRESILNYERLQAKEVASSTEQLL 2692 (2695)
T ss_dssp HHHHHHHHHHHCCCCTTHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCChhhcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999 99999999999999999999999999999999876
No 3
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=38.59 E-value=62 Score=25.87 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=33.3
Q ss_pred ccChhHHHHH--------HHHHHHHHhCCCCc----------------ceEEEEEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMTG--------CLQTHARRHDIAID----------------TLKIDFQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLtA--------~~Q~~AR~~~~plD----------------~L~l~~~v~~~~~~~~~~~~~~~~~ 352 (362)
=++|..+|.| ....+|++.+++++ .+.+.++|.-.-.++|+.+.+++++
T Consensus 45 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~~~v~~~v~~~~~~~gf~i~~~~~v~~~g~~~e~~~~l~~~a 117 (143)
T 2ql8_A 45 GTNPEQLLGLSLSTCLEATLEAVEKEHGLPHTGAVRVKVAFIGARAEYQFLVHAQVMVKGVDFDTAKAFTNEI 117 (143)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEEEEETTEEEEEEEEEEEETTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEEeccCCccEEEEEEEEEECCCCHHHHHHHHHHH
Confidence 3889888855 34788999999987 1333344433225788888888876
No 4
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=28.71 E-value=1.5e+02 Score=23.54 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=33.1
Q ss_pred ccChhHHHHH--------HHHHHHHHhCCCCcceEEE--------------------EEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMTG--------CLQTHARRHDIAIDTLKID--------------------FQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLtA--------~~Q~~AR~~~~plD~L~l~--------------------~~v~~~~~~~~~~~~~~~~~ 352 (362)
=+||..+|.| ....+|++.+++++.+..+ +.|.-.-.++|+.+.+++++
T Consensus 43 g~nP~eLl~aalaaC~~~~~~~~a~~~g~~~~~~~v~~~~~~~~~~~g~~it~i~~~~~v~~~~~~~e~~~~l~~~a 119 (142)
T 1ukk_A 43 GTNPEELIAAAHAGAFSMALAASLEREGFPPKRVSTEARVHLEVVDGKPTLTRIELLTEAEVPGISSEKFLEIAEAA 119 (142)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEECTTSSCEEEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEEEEEecCCCcEEEEEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 3789877754 3478899999998875333 33332225677788888876
No 5
>1n2f_A Organic hydroperoxide resistance protein; peroxide reductase, oxidoreductase; 2.01A {Pseudomonas aeruginosa} SCOP: d.227.1.1
Probab=26.95 E-value=1.7e+02 Score=23.02 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=33.1
Q ss_pred ccChhHHHH--------HHHHHHHHHhCCCCc-ce-----------------EEEEEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMT--------GCLQTHARRHDIAID-TL-----------------KIDFQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLt--------A~~Q~~AR~~~~plD-~L-----------------~l~~~v~~~~~~~~~~~~~~~~~ 352 (362)
=+||..+|. .....+|++.+++++ .+ .+.+.|.-.-.++|+++.+++++
T Consensus 46 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~~~~~v~~~~~~~~~~~gf~i~l~~~v~~~~~~~e~~~~l~~~a 120 (142)
T 1n2f_A 46 ATNPEQLFAAGYSACFIGAMKFVAGQRKQTLPADASITGKVGIGQIPGGFGLEVELHINLPGMEREAAEALVAAA 120 (142)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEEecCCceEEEEEEEEEECCCCHHHHHHHHHHH
Confidence 489998884 456889999999985 53 22333332225778888888776
No 6
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=26.81 E-value=49 Score=29.52 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=52.2
Q ss_pred ChhhHHHHHHHHHHhhcCCCCChHHHHHhhhcccccccccChhhHHHHHHHHHHhcCccCCCCCccccCCCCccCCCCCC
Q psy17977 76 NDSDLECALGTLKMYCAQDTIPWEALTYTFGEVNYGGRVTDYWDQRTLKTILLTYFGFHTLAPDYVYSASGTYYCPETEE 155 (362)
Q Consensus 76 ~~sDl~~s~~~l~~~~~~~~ipw~~l~~li~~iiYGGrv~d~~D~r~L~~ll~~~f~~~~~~~~~~l~~~~~~~~P~~~~ 155 (362)
..-|+..+++.|+.+.+ .+...+=|||...|+.=...++..+..|++. +. +|. ...+|+.
T Consensus 90 P~Psl~~al~~L~~~~~----------~i~~a~PY~~~~~dDYaY~RVK~~L~eFl~~--L~-Df~-----~~fLPP~-- 149 (245)
T 3q5w_A 90 PAPSMDTCVETLRKLLI----------NLNDSFPYGGDKRGDYAFNRIREKYMAVLHA--LN-DMV-----PCYLPPY-- 149 (245)
T ss_dssp CCCCHHHHHHHHHHHHH----------HHHHTSCSSSCTTSHHHHHHHHHHHHHHHHH--HH-HHG-----GGGSTBT--
T ss_pred CCCCHHHHHHHHHHHHH----------HHHHhCCCCCCCccchhHHHHHHHHHHHHHH--HH-Hhh-----hccCCCc--
Confidence 34678889999987654 3444455999888998888888888888753 21 121 1122321
Q ss_pred CCC-------HHHHHHHHHhCCCCCCCc
Q psy17977 156 CNT-------LEMYREFVEELPIIEEPE 176 (362)
Q Consensus 156 ~~~-------~~~~~~~I~~lP~~~~p~ 176 (362)
... ++...++|.+||.-+.++
T Consensus 150 e~q~~~SL~FLd~aT~iIh~LP~w~~~s 177 (245)
T 3q5w_A 150 STCFEKNITFLDAATNVVHELPEFHNPN 177 (245)
T ss_dssp CCCHHHHHHHHHHHHHHHHTSCCCSSSG
T ss_pred cccHHHHHHHHHHHHHHHHHCCCCCchh
Confidence 222 234556788999988763
No 7
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=25.43 E-value=1.9e+02 Score=22.81 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=32.8
Q ss_pred ccChhHHHH--------HHHHHHHHHhCCCCc-ceEE-----------------EEEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMT--------GCLQTHARRHDIAID-TLKI-----------------DFQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLt--------A~~Q~~AR~~~~plD-~L~l-----------------~~~v~~~~~~~~~~~~~~~~~ 352 (362)
=+||..+|. .....+|++.+++++ .+.. .+.|.-.-.++|+++.+++++
T Consensus 47 g~nP~eLllaalaaC~~~~~~~~a~~~g~~~~~~~~v~~~~~~~~~~~gf~i~~~~~v~~~~~~~e~~~~l~~~a 121 (143)
T 1zb9_A 47 GTNPEQLFAAGYSACFIGALKFVANKEKVDLPAEPRVEGRVGIGEIPGGFGLVVELRIAVSGMERSMLQTLVDKA 121 (143)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCeeEEEEEEEEEecCCceEEEEEEEEEECCCCHHHHHHHHHHH
Confidence 489998884 456889999999986 5322 233332225778888888876
No 8
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=24.31 E-value=2.1e+02 Score=22.35 Aligned_cols=49 Identities=22% Similarity=0.189 Sum_probs=32.6
Q ss_pred ccChhHHHHH--------HHHHHHHHhCCCCc-ceEEE-----------------EEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMTG--------CLQTHARRHDIAID-TLKID-----------------FQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLtA--------~~Q~~AR~~~~plD-~L~l~-----------------~~v~~~~~~~~~~~~~~~~~ 352 (362)
=+||..+|.| ....+|++.+++++ .+..+ +.|.-.-.++|+.+.+++++
T Consensus 43 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~~~~~v~~~~~~~~~~~g~~i~~~~~v~~~~~~~e~~~~l~~~a 117 (139)
T 1usp_A 43 GTNPEQLFAAGYAACFQGALGVVSRRQKIDVPADSTITARVGLQKAGLAFALDVELEGHFPGLSREQAEGLMHAA 117 (139)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEEEEEEEecCCceEEEEEEEEEECCCCHHHHHHHHHHH
Confidence 4899988843 45888999999986 53222 33332225677788887764
No 9
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=22.28 E-value=2.4e+02 Score=22.24 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=32.7
Q ss_pred ccChhHHHHH--------HHHHHHHHhCCCCcceEEE--------------------EEEecccCCHHHHHHHHHhh
Q psy17977 304 FFFPQGFMTG--------CLQTHARRHDIAIDTLKID--------------------FQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 304 ff~P~~FLtA--------~~Q~~AR~~~~plD~L~l~--------------------~~v~~~~~~~~~~~~~~~~~ 352 (362)
=+||..+|.| ....+|++.+++++.+..+ +.|.-.-.++|+.+.+++++
T Consensus 45 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~~~~v~~~~~~~~~~~g~~~t~I~l~~~v~~~~~~~e~~~~l~~~a 121 (143)
T 1qwi_A 45 GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKSEVAVPGIDASTFDGIIQKA 121 (143)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEEEEecCCCcEEEEEEEEEEEEeCCCCHHHHHHHHHHH
Confidence 3789877754 3578899999998875333 22322225677788888766
No 10
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=19.56 E-value=1e+02 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.2
Q ss_pred EEEEEEecccCCHHHHHHHHHhhcCc
Q psy17977 330 KIDFQMTNVVLSQEEIELAHRKAGGE 355 (362)
Q Consensus 330 ~l~~~v~~~~~~~~~~~~~~~~~~~~ 355 (362)
++.|.|... .|.-||..++|++|+-
T Consensus 29 ~~~F~V~~~-AnK~eIK~AVE~lf~V 53 (93)
T 3r8s_T 29 TIVLKVAKD-ATKAEIKAAVQKLFEV 53 (93)
T ss_dssp EEEEEECSS-CCHHHHHHHHHHHSCC
T ss_pred EEEEEECCC-CCHHHHHHHHHHHcCC
Confidence 677888776 7899999999999974
Done!