Query psy17977
Match_columns 362
No_of_seqs 141 out of 1189
Neff 7.6
Searched_HMMs 13730
Date Fri Aug 16 19:11:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17977.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17977hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hwna1 a.31.1.1 (A:5-43) cAMP 20.3 79 0.0057 18.3 4.3 38 16-61 2-39 (39)
2 d1in4a1 a.4.5.11 (A:255-329) H 19.3 25 0.0018 23.7 1.9 15 116-130 4-18 (75)
3 d1w32a_ c.1.8.3 (A:) Xylanase 19.2 61 0.0044 27.9 5.2 42 320-361 201-244 (346)
4 d1vqos1 d.12.1.1 (S:1-81) Ribo 15.4 62 0.0045 21.9 3.3 26 330-356 23-48 (81)
5 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 10.6 92 0.0067 20.3 3.0 23 311-333 26-48 (79)
6 d1ur1a_ c.1.8.3 (A:) Xylanase 10.0 1.4E+02 0.01 25.5 4.8 33 320-352 194-226 (350)
7 d1r85a_ c.1.8.3 (A:) Xylanase 9.6 1.1E+02 0.0079 26.5 4.0 42 320-361 214-255 (371)
8 d1x48a1 d.50.1.1 (A:8-83) dsRN 9.4 64 0.0046 21.2 1.7 16 312-327 2-17 (76)
9 d2al3a1 d.15.1.2 (A:10-85) Tet 9.2 1.1E+02 0.0081 20.4 2.9 28 306-333 18-45 (76)
10 d2uuia1 f.56.1.1 (A:2-147) Leu 8.9 2.1E+02 0.015 21.1 4.9 34 56-92 24-57 (146)
No 1
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.34 E-value=79 Score=18.29 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHhccCHHHHhccCcchhhhhHHHHHHHHHHHHHHH
Q psy17977 16 SPGIRSNLKRSLATIDEQVFNTHSLEGAWRKMVFGVCFFHAVIQER 61 (362)
Q Consensus 16 P~glk~nl~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR 61 (362)
|+|++.-|+.. +.+.+... +.+ =+-|+..+|+.+..+|
T Consensus 2 P~gL~~lL~~f----trevLR~q--P~d--i~~faa~YF~~L~~~R 39 (39)
T d2hwna1 2 PPGLTELLQGY----TVEVLRQQ--PPD--LVDFAVEYFTRLREAR 39 (39)
T ss_dssp CTTHHHHHHHH----HHHHHHHC--CSC--HHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHH----HHHHHHHC--Cch--HHHHHHHHHHHHHhcC
Confidence 77877665532 23445542 233 3589999999999876
No 2
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=19.32 E-value=25 Score=23.75 Aligned_cols=15 Identities=47% Similarity=0.773 Sum_probs=13.3
Q ss_pred ChhhHHHHHHHHHHh
Q psy17977 116 DYWDQRTLKTILLTY 130 (362)
Q Consensus 116 d~~D~r~L~~ll~~~ 130 (362)
|..|+++|+++++.|
T Consensus 4 d~~Dr~yL~~l~~~f 18 (75)
T d1in4a1 4 DEFDRKILKTIIEIY 18 (75)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh
Confidence 789999999999864
No 3
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]}
Probab=19.21 E-value=61 Score=27.93 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHhCCCCcceEEEEEEecccCCHHHHHHHHHhh--cCccccccc
Q psy17977 320 RRHDIAIDTLKIDFQMTNVVLSQEEIELAHRKA--GGEEICLYI 361 (362)
Q Consensus 320 R~~~~plD~L~l~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~ 361 (362)
++.++|+|-+.++.++...+.+.++++++.++. +|...+++|
T Consensus 201 ~~~g~pIDgIG~Q~H~~~~~p~~~~~~~~l~~~~~~g~~l~v~I 244 (346)
T d1w32a_ 201 LNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPTLKIKI 244 (346)
T ss_dssp HHTTCCCCEEEECCEEESSSSCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred HhcCCccceEEEEeeccCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 457899999999999988878888888777653 354455554
No 4
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=15.39 E-value=62 Score=21.92 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.8
Q ss_pred EEEEEEecccCCHHHHHHHHHhhcCcc
Q psy17977 330 KIDFQMTNVVLSQEEIELAHRKAGGEE 356 (362)
Q Consensus 330 ~l~~~v~~~~~~~~~~~~~~~~~~~~~ 356 (362)
++.|.|... .+.-||..++++.||-.
T Consensus 23 ~y~F~V~~~-A~K~~IK~AVe~lf~Vk 48 (81)
T d1vqos1 23 KLQFAVDDR-ASKGEVADAVEEQYDVT 48 (81)
T ss_dssp EEEEEECTT-CCHHHHHHHHHHHHCCC
T ss_pred EEEEEEcCc-CCHHHHHHHHHHHcCCc
Confidence 677888877 78999999999999753
No 5
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=10.64 E-value=92 Score=20.29 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCcceEEEE
Q psy17977 311 MTGCLQTHARRHDIAIDTLKIDF 333 (362)
Q Consensus 311 LtA~~Q~~AR~~~~plD~L~l~~ 333 (362)
+.-++..+|.+.++|.+++.|.|
T Consensus 26 ~~~l~~~~~~~~~i~~~~~~l~f 48 (79)
T d1euvb_ 26 LRRLMEAFAKRQGKEMDSLRFLY 48 (79)
T ss_dssp THHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHHHHhCCChHhEEEEE
Confidence 45578889999999999999988
No 6
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]}
Probab=10.03 E-value=1.4e+02 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=25.8
Q ss_pred HHhCCCCcceEEEEEEecccCCHHHHHHHHHhh
Q psy17977 320 RRHDIAIDTLKIDFQMTNVVLSQEEIELAHRKA 352 (362)
Q Consensus 320 R~~~~plD~L~l~~~v~~~~~~~~~~~~~~~~~ 352 (362)
++.++|+|-+.++..+.....+.+++....+..
T Consensus 194 ~~~GvpiDgIGlQ~H~~~~~~~~~~i~~~l~~~ 226 (350)
T d1ur1a_ 194 QKRGMPIHGLGIQGHLGIDTPPIAEIEKSIIAF 226 (350)
T ss_dssp HHTTCCCCEEEECCEEESSCSCHHHHHHHHHHH
T ss_pred HhCCCCceEEEEeeeccCCCCCHHHHHHHHHHH
Confidence 367999999999988877777888877655543
No 7
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]}
Probab=9.64 E-value=1.1e+02 Score=26.47 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=28.8
Q ss_pred HHhCCCCcceEEEEEEecccCCHHHHHHHHHhhcCccccccc
Q psy17977 320 RRHDIAIDTLKIDFQMTNVVLSQEEIELAHRKAGGEEICLYI 361 (362)
Q Consensus 320 R~~~~plD~L~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (362)
++.++|+|-+.++..+.....+.+++....++...--.|++|
T Consensus 214 ~~~g~pidgIG~Q~H~~~~~~~~~~i~~~l~~~a~~Gl~i~I 255 (371)
T d1r85a_ 214 KEEGVPIDGIGHQSHIQIGWPSEAEIEKTINMFAALGLDNQI 255 (371)
T ss_dssp HHTTCCCCEEEECCEECSSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHCCCCcceeeccccccCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 346889999999888876667788877766664333344443
No 8
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.37 E-value=64 Score=21.24 Aligned_cols=16 Identities=13% Similarity=0.528 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCCCCc
Q psy17977 312 TGCLQTHARRHDIAID 327 (362)
Q Consensus 312 tA~~Q~~AR~~~~plD 327 (362)
.+++|++|.+++++++
T Consensus 2 ~s~L~E~~Qk~~~~~~ 17 (76)
T d1x48a1 2 IGLVNSFAQKKKLSVN 17 (76)
T ss_dssp HHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHhCCCCc
Confidence 3689999999998863
No 9
>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.19 E-value=1.1e+02 Score=20.35 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHHHHhCCCCcceEEEE
Q psy17977 306 FPQGFMTGCLQTHARRHDIAIDTLKIDF 333 (362)
Q Consensus 306 ~P~~FLtA~~Q~~AR~~~~plD~L~l~~ 333 (362)
.|..-|.-++++.+++.+..-++-.|..
T Consensus 18 tP~t~l~~VL~eaC~k~~~~~~~~~Lkh 45 (76)
T d2al3a1 18 TPSTVLLQVLEDTCRRQDFNPSEYDLKF 45 (76)
T ss_dssp CTTSBHHHHHHHHHHHTTCCGGGCEEEE
T ss_pred CCCcCHHHHHHHHHHHhCCChhHceeee
Confidence 6888899999999999999999888876
No 10
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.90 E-value=2.1e+02 Score=21.12 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=25.3
Q ss_pred HHHHHHhhhCCCCcccccccChhhHHHHHHHHHHhhc
Q psy17977 56 AVIQERKKFGPLGWNILYEFNDSDLECALGTLKMYCA 92 (362)
Q Consensus 56 avl~eR~~ygplGwn~~Y~F~~sDl~~s~~~l~~~~~ 92 (362)
-|...|++|+-. -+-+..+.||+.+.+.=.|+++
T Consensus 24 ~V~~~R~k~kv~---~p~~~g~~~fera~RaH~N~~E 57 (146)
T d2uuia1 24 QVISARRAFRVS---PPLTTGPPEFERVYRAQVNCSE 57 (146)
T ss_dssp HHHHHHHHTTCC---SSCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC---CCCCCCCHHHHHHHHHHhhhHh
Confidence 488999999642 2445688899999887777665
Done!