RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17977
         (362 letters)



>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
           9606]}
          Length = 133

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 90  YCAQDTIPWEALTYTFGEVNYGGRVT-DYWDQRTLKTI 126
           YCA ++I   A    + + + G     D W Q T  T+
Sbjct: 94  YCASNSIAGVAAAGDYADYDGGYYYDMDVWGQGTTVTV 131


>d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III
           {Escherichia coli [TaxId: 562]}
          Length = 297

 Score = 27.2 bits (59), Expect = 3.1
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 226 SVIERIKTKIDKDNAHPSLLEKGNRTCQVYLIVPKLWSAKCYPSLKSLGSWIKDLALRID 285
             +ERI  ++    A P  L +     Q    +           +++L   + + A   D
Sbjct: 77  GDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEFAELRD 136

Query: 286 FIAVWLNHGPPVSFWISGFFFPQGFMTGCLQTHARRHDI 324
            +   +   PPV     G     G+     +  A     
Sbjct: 137 LLERAIIDTPPVL-VRDGGVIASGYNEELDEWRALADGA 174


>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Enterococcus faecalis [TaxId: 1351]}
          Length = 329

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 167 EELPIIEEPEIFGMHDNANIAFQMKETKNVIQTIMEVQ 204
           + + II   E     D    A + K+T +++     V+
Sbjct: 50  KNITIIHTDEKIASDDEPVKAIRRKKTASMVLAAQAVK 87


>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 98

 Score = 25.1 bits (55), Expect = 5.3
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 208 GGSSEGKSPDELVLEQCDSVIERIKTKIDK 237
           G  S  +          D V  +++ K +K
Sbjct: 4   GAPSATQPATAETQHIADQVRSQLEEKYNK 33


>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
           9606]}
          Length = 120

 Score = 25.1 bits (54), Expect = 8.8
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 8/46 (17%)

Query: 89  MYCAQDTIPWEALTYTFGEVNYGGRVT--------DYWDQRTLKTI 126
               Q ++   ++T     V Y  R          +YW Q TL T+
Sbjct: 73  TSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTV 118


>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
           thermophilus [TaxId: 274]}
          Length = 230

 Score = 25.8 bits (56), Expect = 9.0
 Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 6/96 (6%)

Query: 243 SLLEKGNRTCQVYLIVPKLWSAKCYPSLKSLGSWIKDLALRIDFIAVWLNHGPPVSFWIS 302
            LL +GNR   V          +    + ++GS++         +             + 
Sbjct: 92  GLLLEGNRVVGVRTWEGPPARGEKV--VLAVGSFLGARLFLGGVVEEAGRLSEASYPDLL 149

Query: 303 GFFFPQGFMTGCLQTHA----RRHDIAIDTLKIDFQ 334
                 GF     +             +  L    +
Sbjct: 150 EDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPE 185


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0519    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,422,304
Number of extensions: 68809
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 11
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)