Query psy17978
Match_columns 174
No_of_seqs 125 out of 894
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:12:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08393 DHC_N2: Dynein heavy 100.0 5.5E-41 1.2E-45 291.1 10.0 168 2-174 95-270 (408)
2 COG5245 DYN1 Dynein, heavy cha 85.4 1.3 2.8E-05 45.6 4.7 102 44-173 565-667 (3164)
3 PF14131 DUF4298: Domain of un 58.4 43 0.00094 23.1 5.7 41 105-145 4-44 (90)
4 PF15110 TMEM141: TMEM141 prot 44.2 15 0.00033 25.9 1.5 14 126-139 79-92 (94)
5 PF08333 DUF1725: Protein of u 32.9 19 0.00042 18.1 0.5 14 130-143 3-16 (20)
6 KOG0994|consensus 30.1 6E+02 0.013 26.4 10.2 92 77-168 1166-1280(1758)
7 PF05871 ESCRT-II: ESCRT-II co 28.9 46 0.00099 25.1 2.1 48 109-156 14-67 (139)
8 PF07436 Curto_V3: Curtovirus 28.1 47 0.001 22.6 1.8 23 138-160 25-47 (87)
9 PF08671 SinI: Anti-repressor 28.0 51 0.0011 18.3 1.7 13 160-172 1-13 (30)
10 PF04644 Motilin_ghrelin: Moti 26.7 43 0.00093 18.3 1.2 17 139-155 2-18 (28)
11 PF05400 FliT: Flagellar prote 25.3 1.9E+02 0.0042 18.5 8.0 54 78-131 8-63 (84)
12 PF12025 Phage_C: Phage protei 25.2 2E+02 0.0044 18.7 4.8 35 101-135 10-52 (68)
13 PF15225 IL32: Interleukin 32 23.8 2E+02 0.0043 20.2 4.4 37 107-143 58-100 (104)
14 KOG2150|consensus 22.6 4E+02 0.0086 24.9 7.2 77 76-165 13-98 (575)
15 cd08815 Death_TNFRSF25_DR3 Dea 20.1 57 0.0012 22.2 1.0 14 1-14 11-24 (77)
No 1
>PF08393 DHC_N2: Dynein heavy chain, N-terminal region 2; InterPro: IPR013602 Dyneins are described as motor proteins of eukaryotic cells, as they can convert energy derived from the hydrolysis of ATP to force and movement along cytoskeletal polymers, such as microtubules. Dyneins generally contain one to three heavy chains, where each heavy chain consists of a C-terminal globular head, a flexible microtubule-binding stalk, and a flexible N-terminal tail known as the cargo-binding domain []. The two categories of dyneins are the axonemal dyneins, which produce the bending motions that propagate along cilia and flagella, and the cytosolic dyneins, which drive a variety of fundamental cellular processes including nuclear migration, organisation of the mitotic spindle, chromosome separation during mitosis, and the positioning and function of many intracellular organelles. Cytoplasmic dyneins contain several accessory subunits ranging from light to intermediate chains. This entry represents a region found C-terminal to the dynein heavy chain N-terminal region 1 (IPR013594 from INTERPRO) in many members of this family. No functions seem to have been attributed specifically to this region. ; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=100.00 E-value=5.5e-41 Score=291.11 Aligned_cols=168 Identities=32% Similarity=0.552 Sum_probs=150.2
Q ss_pred ccHHHHHHhcC-CCCCCCCCCCCCC------C-CCCCCcchhhhhhhhhHHHHhhcchhhHhcccccceeeeeeccCCCC
Q psy17978 2 STIHALCDVSK-RTPPMSKSGMTSG------P-GPNGPRPGRKLPRNGEIVKKGYLKKMKIETTWKNLEFTCIPHRDSKN 73 (174)
Q Consensus 2 ~HW~~L~~~~g-~~~~~~~~~~t~~------~-~~~~~i~~i~~~A~~E~~lE~~L~~~~i~~~W~~~~f~~~~~~~~~~ 73 (174)
|||.+|++++| .++ .+ ..+|++ + .+.+.|.+|+..|++|+.||++|+ +|...|+++.|++.+|+++ |
T Consensus 95 rHW~~l~~~~g~~~~-~~-~~~tL~~Ll~~~l~~~~~~I~~I~~~A~~E~~ie~~L~--~i~~~W~~~~f~~~~~~~~-~ 169 (408)
T PF08393_consen 95 RHWKQLFQILGIQDF-PN-ESLTLQDLLDLGLLDHEDKIEEISEQAQKEYKIEQSLE--KIKEEWKNMEFEFVPYKDK-D 169 (408)
T ss_dssp HHHHHHHHCTT------T-TS-SHHHHHHS-CCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCC-B-EEEEETTT--
T ss_pred HHHHHHHHHhccccc-cc-ccccHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHhceeeeeccccc-h
Confidence 79999999999 777 33 445543 2 367788899999999999999999 9999999999999999996 8
Q ss_pred eeeecChHHHHHHHHHhHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCchhHHhhchHH
Q psy17978 74 VFILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLDEWINFQNNWLYLESIFTGPDIQKQLPNE 153 (174)
Q Consensus 74 ~~il~~~d~i~~~led~~~~L~~m~~S~~~~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s~dI~~qLp~E 153 (174)
+++|+++++|++.|+||+++|++|++|||++||+.+|..|+++|..++++|+.|..||++|+||+|||+++||+++||.|
T Consensus 170 ~~il~~~~~i~~~led~~~~L~~m~~S~~~~~~~~~v~~w~~~L~~~~~il~~w~~~Q~~W~yL~~if~~~di~~~lp~e 249 (408)
T PF08393_consen 170 VFILKNWDEIIQQLEDHLLTLQSMKSSPFVKPFRDEVEEWEKKLNNIQEILEEWMEVQRKWMYLEPIFSSSDIKKQLPKE 249 (408)
T ss_dssp CEEEE-CHHHHHHHHHHHHHHHHTCSSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHCCCTHHH
T ss_pred hheecchHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhHHHHHHHHHHHHHHHHhcC
Q psy17978 154 SKLFTEVDKFWKRIDFRRLKK 174 (174)
Q Consensus 154 ~~~F~~vd~~~~~im~~~~~~ 174 (174)
+++|..|++.|+.+|+++.++
T Consensus 250 ~~~F~~i~~~~~~i~~~~~~~ 270 (408)
T PF08393_consen 250 AKKFSSIDKEWRSIMKRAQKD 270 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcChHHHHHHHHHHhC
Confidence 999999999999999999764
No 2
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=85.38 E-value=1.3 Score=45.64 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=82.0
Q ss_pred HHHhhcchhhHhcccccceeeeeeccCCCCeeeecChHHHHHHHHHhHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHH
Q psy17978 44 VKKGYLKKMKIETTWKNLEFTCIPHRDSKNVFILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFSKT 123 (174)
Q Consensus 44 ~lE~~L~~~~i~~~W~~~~f~~~~~~~~~~~~il~~~d~i~~~led~~~~L~~m~~S~~~~~f~~~v~~w~~~L~~~~~~ 123 (174)
.++.++. .+...|...++. +++.+-+.+.+..+-.|.++.| |+.. .+-+++|...+++
T Consensus 565 iv~~s~~--r~~k~~~e~q~~----------------~~irewc~~~l~~~~~~~~a~~---~e~~-~d~~~~l~~~s~~ 622 (3164)
T COG5245 565 IVQLSGI--RRAKRCVERQID----------------DEIREWCSSVLSDDFLEERAVR---VERG-ADGARRLRASSGS 622 (3164)
T ss_pred HHHHhhh--HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH---HHcC-ccHHHHHHhccCC
Confidence 7888888 888888876643 5666667788888888999888 3334 6677777766654
Q ss_pred HHHHHHHHhhHHHhhhhcC-chhHHhhchHHHhHHHHHHHHHHHHHHHHhc
Q psy17978 124 LDEWINFQNNWLYLESIFT-GPDIQKQLPNESKLFTEVDKFWKRIDFRRLK 173 (174)
Q Consensus 124 l~~w~~~Q~~W~yLe~IF~-s~dI~~qLp~E~~~F~~vd~~~~~im~~~~~ 173 (174)
-- -.|+.+.+|.. ..||..-+|.+..+|..+...+|.|.++++.
T Consensus 623 ~v------~~~ld~y~~~~~~~dl~~~ip~~~~~~~sl~s~~~~i~~r~~~ 667 (3164)
T COG5245 623 PV------LRRLDEYLMMMSLEDLMPLIPHAVHRKMSLVSGVRGIYKRVVS 667 (3164)
T ss_pred cH------HHHHHHHHHHhhhhhhcccccHHHHHHHHHHhhhhhhhhhhhc
Confidence 33 56999999996 6899999999999999999999999999864
No 3
>PF14131 DUF4298: Domain of unknown function (DUF4298)
Probab=58.35 E-value=43 Score=23.12 Aligned_cols=41 Identities=15% Similarity=0.453 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCchh
Q psy17978 105 QIRESAEQWRQMLFLFSKTLDEWINFQNNWLYLESIFTGPD 145 (174)
Q Consensus 105 ~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s~d 145 (174)
-..+....|...|..+.+.++.|...|..-.-|...++|++
T Consensus 4 eme~~y~~~~~~l~~le~~l~~~~~~~~~~~~L~~YY~s~~ 44 (90)
T PF14131_consen 4 EMEKIYNEWCELLEELEEALEKWQEAQPDYRKLRDYYGSEE 44 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHh
Confidence 45667788999999999999999999999999999886643
No 4
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=44.23 E-value=15 Score=25.90 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.2
Q ss_pred HHHHHHhhHHHhhh
Q psy17978 126 EWINFQNNWLYLES 139 (174)
Q Consensus 126 ~w~~~Q~~W~yLe~ 139 (174)
.=..||..|++||.
T Consensus 79 et~~Cq~~W~~lE~ 92 (94)
T PF15110_consen 79 ETQKCQNLWMFLET 92 (94)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34689999999984
No 5
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=32.86 E-value=19 Score=18.13 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=10.4
Q ss_pred HHhhHHHhhhhcCc
Q psy17978 130 FQNNWLYLESIFTG 143 (174)
Q Consensus 130 ~Q~~W~yLe~IF~s 143 (174)
+=.+|+.||+|--|
T Consensus 3 F~~kWmeLE~IiLs 16 (20)
T PF08333_consen 3 FAGKWMELENIILS 16 (20)
T ss_pred hHHHHHHHHHHHHH
Confidence 33579999999644
No 6
>KOG0994|consensus
Probab=30.07 E-value=6e+02 Score=26.40 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=61.8
Q ss_pred ecChHHHHHHHHHhHH----HHHHHhhchhhhhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhH
Q psy17978 77 LAGLEEVQTILDESLI----SLATILSSRQVAQIRESAEQWRQMLFLFSKTL------------------DEWINFQNNW 134 (174)
Q Consensus 77 l~~~d~i~~~led~~~----~L~~m~~S~~~~~f~~~v~~w~~~L~~~~~~l------------------~~w~~~Q~~W 134 (174)
+..||-|++.|.+..- +-..++.+.-.++|..++.+.++||..+..+| ..=..+|-.=
T Consensus 1166 F~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1166 FQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999988543 44578888889999999999999999888888 1111223333
Q ss_pred HHhhhhcC-chhHHhhchHHHhHHHHHHHHHHHHH
Q psy17978 135 LYLESIFT-GPDIQKQLPNESKLFTEVDKFWKRID 168 (174)
Q Consensus 135 ~yLe~IF~-s~dI~~qLp~E~~~F~~vd~~~~~im 168 (174)
-.|.-+=. -.||..++|.-.+..+.+.++...+.
T Consensus 1246 e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~ 1280 (1758)
T KOG0994|consen 1246 EDLPQEEETLSDITNSLPLAGKDLESLQREFNGLL 1280 (1758)
T ss_pred hhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHH
Confidence 33333332 35777778866666666666655544
No 7
>PF05871 ESCRT-II: ESCRT-II complex subunit; InterPro: IPR008570 This entry represents the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo []. ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 [].; PDB: 1W7P_B 1U5T_D 1XB4_D 3HTU_E 3CUQ_C 2ZME_D.
Probab=28.91 E-value=46 Score=25.09 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH-Hh-----hhhcCchhHHhhchHHHhH
Q psy17978 109 SAEQWRQMLFLFSKTLDEWINFQNNWL-YL-----ESIFTGPDIQKQLPNESKL 156 (174)
Q Consensus 109 ~v~~w~~~L~~~~~~l~~w~~~Q~~W~-yL-----e~IF~s~dI~~qLp~E~~~ 156 (174)
....+.+.|..=.+++-.|....|.|. -+ .|+|.++.|.|.||.|+.+
T Consensus 14 n~~Tr~~Ql~~W~~lIl~y~~~~k~~~l~~~e~~~~~lF~N~~I~R~L~~e~~~ 67 (139)
T PF05871_consen 14 NPETREKQLELWSDLILDYCRHHKIFRLSLSEALESPLFNNESINRRLSPEFIR 67 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT-SEEECHHHHCCCTTEETTTTEE--HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhceeeeecccccCCCCccCccccCCCCHHHHH
Confidence 345566666666777888888888773 33 4999999999999998754
No 8
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=28.08 E-value=47 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.9
Q ss_pred hhhcCchhHHhhchHHHhHHHHH
Q psy17978 138 ESIFTGPDIQKQLPNESKLFTEV 160 (174)
Q Consensus 138 e~IF~s~dI~~qLp~E~~~F~~v 160 (174)
.+-|.|+.|.++|..-+.+|+.+
T Consensus 25 YGTfqSgsiS~kLS~l~sr~DeL 47 (87)
T PF07436_consen 25 YGTFQSGSISRKLSSLSSRFDEL 47 (87)
T ss_pred eeeeccchHHHHHHHHHHHHHHH
Confidence 34566899999999999998765
No 9
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=27.97 E-value=51 Score=18.27 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHh
Q psy17978 160 VDKFWKRIDFRRL 172 (174)
Q Consensus 160 vd~~~~~im~~~~ 172 (174)
+|.+|..+|..|.
T Consensus 1 LD~EW~~Li~eA~ 13 (30)
T PF08671_consen 1 LDEEWVELIKEAK 13 (30)
T ss_dssp --HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5789999999875
No 10
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=26.65 E-value=43 Score=18.29 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=10.5
Q ss_pred hhcCchhHHhhchHHHh
Q psy17978 139 SIFTGPDIQKQLPNESK 155 (174)
Q Consensus 139 ~IF~s~dI~~qLp~E~~ 155 (174)
|||.++|+++.=-.|.+
T Consensus 2 p~F~~~e~qr~QekE~n 18 (28)
T PF04644_consen 2 PIFTSSEHQRMQEKERN 18 (28)
T ss_dssp -TT-HHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHhc
Confidence 78999999887444443
No 11
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=25.34 E-value=1.9e+02 Score=18.53 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=40.2
Q ss_pred cChHHHHHHHHHhHHHHHHHhh--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17978 78 AGLEEVQTILDESLISLATILS--SRQVAQIRESAEQWRQMLFLFSKTLDEWINFQ 131 (174)
Q Consensus 78 ~~~d~i~~~led~~~~L~~m~~--S~~~~~f~~~v~~w~~~L~~~~~~l~~w~~~Q 131 (174)
++||.+...+++....+..+.+ .+...++..+...-...+.....-+...+...
T Consensus 8 ~dWe~l~~l~~~R~~ll~~l~~~~~~~~~~~~~~~~~~l~~Il~~d~~i~~ll~~~ 63 (84)
T PF05400_consen 8 GDWEELEELLDERQELLERLFEEQAALSPPEQEELRELLRRILELDQEIRALLQAR 63 (84)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHCHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5799999999999999999888 77777888877777777776666665555443
No 12
>PF12025 Phage_C: Phage protein C; InterPro: IPR016407 This family of phage proteins is functionally uncharacterised. Proteins in this family are typically between 68 to 86 amino acids in length.; GO: 0019073 viral DNA genome packaging
Probab=25.18 E-value=2e+02 Score=18.72 Aligned_cols=35 Identities=14% Similarity=0.412 Sum_probs=24.4
Q ss_pred hhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17978 101 RQVAQIRESA--------EQWRQMLFLFSKTLDEWINFQNNWL 135 (174)
Q Consensus 101 ~~~~~f~~~v--------~~w~~~L~~~~~~l~~w~~~Q~~W~ 135 (174)
.|.+.|+.+. .+=++-|+.+...+..|......|+
T Consensus 10 SYfATfrh~L~~l~KtDalDeEKwLNm~G~llkdWFryE~hfv 52 (68)
T PF12025_consen 10 SYFATFRHQLNVLAKTDALDEEKWLNMLGALLKDWFRYEDHFV 52 (68)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555665554 3446678888888988888877776
No 13
>PF15225 IL32: Interleukin 32
Probab=23.79 E-value=2e+02 Score=20.20 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHhhhhcCc
Q psy17978 107 RESAEQWRQMLF------LFSKTLDEWINFQNNWLYLESIFTG 143 (174)
Q Consensus 107 ~~~v~~w~~~L~------~~~~~l~~w~~~Q~~W~yLe~IF~s 143 (174)
-..+..|.++.- .+..+--.|..+|+-|..|..+|-|
T Consensus 58 w~~vlAWVkk~va~~~~ALv~av~A~Wk~fq~Fcc~la~l~~S 100 (104)
T PF15225_consen 58 WQAVLAWVKKMVAAGMQALVSAVQALWKEFQSFCCSLAELLRS 100 (104)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666766654 4667777899999999999998854
No 14
>KOG2150|consensus
Probab=22.62 E-value=4e+02 Score=24.93 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=59.2
Q ss_pred eecChHHHHHHHHHhHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCchhH---------
Q psy17978 76 ILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLDEWINFQNNWLYLESIFTGPDI--------- 146 (174)
Q Consensus 76 il~~~d~i~~~led~~~~L~~m~~S~~~~~f~~~v~~w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s~dI--------- 146 (174)
+|+-++|=++..||--.++++-.+...-.-++.++..=.++|.++.+-|..|. +|.||
T Consensus 13 ~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~-------------ss~dIKDK~~L~d~ 79 (575)
T KOG2150|consen 13 CLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQ-------------SSSDIKDKDSLLDN 79 (575)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------cccccccHHHHHHH
Confidence 45555666667777777778777777788899999999999999999999884 56666
Q ss_pred HhhchHHHhHHHHHHHHHH
Q psy17978 147 QKQLPNESKLFTEVDKFWK 165 (174)
Q Consensus 147 ~~qLp~E~~~F~~vd~~~~ 165 (174)
|+..-..-.+|+.|+++=|
T Consensus 80 RrlIE~~MErfK~vEke~K 98 (575)
T KOG2150|consen 80 RRLIEQRMERFKAVEKEMK 98 (575)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555567788999988644
No 15
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.10 E-value=57 Score=22.19 Aligned_cols=14 Identities=0% Similarity=-0.145 Sum_probs=11.6
Q ss_pred CccHHHHHHhcCCC
Q psy17978 1 MSTIHALCDVSKRT 14 (174)
Q Consensus 1 ~~HW~~L~~~~g~~ 14 (174)
++.|+++++.+|.+
T Consensus 11 ~~~wk~F~R~LGLs 24 (77)
T cd08815 11 ARRWKEFVRTLGLR 24 (77)
T ss_pred hHHHHHHHHHcCCc
Confidence 46899999999865
Done!