Query psy17978
Match_columns 174
No_of_seqs 125 out of 894
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 19:13:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17978.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17978hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i5ua1 a.275.1.1 (A:2-75) Unc 19.2 86 0.0063 18.4 4.4 10 132-141 55-64 (74)
2 d1xb4a1 a.4.5.54 (A:2-125) Vac 18.2 32 0.0023 22.7 2.2 46 111-156 20-90 (124)
3 d2o4ta1 a.69.4.1 (A:16-105) Un 17.4 84 0.0061 19.2 4.1 56 112-170 30-87 (90)
4 d2hh6a1 a.69.4.1 (A:1-112) Unc 17.2 1E+02 0.0075 19.7 4.7 47 112-158 50-98 (112)
5 d2o3la1 a.69.4.1 (A:14-95) Hyp 16.8 1.1E+02 0.0078 18.3 4.6 45 113-157 35-81 (82)
6 d2j9ua1 a.24.28.1 (A:148-241) 13.2 1E+02 0.0074 19.1 3.6 43 77-121 24-66 (94)
7 d1wa8a1 a.25.3.1 (A:1-99) ESAT 10.8 1.6E+02 0.012 17.2 5.9 28 101-128 45-72 (99)
8 d2ez9a1 c.31.1.3 (A:183-365) P 10.6 83 0.006 21.2 2.8 46 73-121 137-182 (183)
9 d1p4ea1 a.60.9.1 (A:2-129) Flp 10.2 1.3E+02 0.0097 18.6 3.4 29 38-71 81-109 (128)
10 d2ilka_ a.26.1.3 (A:) Interleu 9.9 1.1E+02 0.0078 20.6 3.1 31 135-165 66-101 (155)
No 1
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=19.18 E-value=86 Score=18.42 Aligned_cols=10 Identities=30% Similarity=0.793 Sum_probs=5.2
Q ss_pred hhHHHhhhhc
Q psy17978 132 NNWLYLESIF 141 (174)
Q Consensus 132 ~~W~yLe~IF 141 (174)
++|-|..+|.
T Consensus 55 ~n~~Yi~~IL 64 (74)
T d2i5ua1 55 RNYNYINAIL 64 (74)
T ss_dssp CSHHHHHHHH
T ss_pred ccHHHHHHHH
Confidence 4555555553
No 2
>d1xb4a1 a.4.5.54 (A:2-125) Vacuolar protein sorting-associated protein VPS25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.23 E-value=32 Score=22.67 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH-H------------------------hhhhcCchhHHhhchHHHhH
Q psy17978 111 EQWRQMLFLFSKTLDEWINFQNNWL-Y------------------------LESIFTGPDIQKQLPNESKL 156 (174)
Q Consensus 111 ~~w~~~L~~~~~~l~~w~~~Q~~W~-y------------------------Le~IF~s~dI~~qLp~E~~~ 156 (174)
..+.+.|..=.+++-.|....|.|. - ..|+|.++.|.|.||.|+.+
T Consensus 20 ~Tr~kQl~~W~~LIL~ycr~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~R~Ls~e~~~ 90 (124)
T d1xb4a1 20 LTRRQQISTWIDIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFID 90 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEETTSBBCCC-----------------CBTTEETTTTEECCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeeeeccccccccccccccccccccccccCCCCccCcccCCcCCHHHHH
Confidence 3444455555666667777776663 2 34599999999999987653
No 3
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=17.35 E-value=84 Score=19.18 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCc--hhHHhhchHHHhHHHHHHHHHHHHHHH
Q psy17978 112 QWRQMLFLFSKTLDEWINFQNNWLYLESIFTG--PDIQKQLPNESKLFTEVDKFWKRIDFR 170 (174)
Q Consensus 112 ~w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s--~dI~~qLp~E~~~F~~vd~~~~~im~~ 170 (174)
+|......+.++|+.+...|..=.-.+.||+. ......|-.+++.|.. .||.-.++
T Consensus 30 ~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~deli~~~k~~~d---k~r~~ln~ 87 (90)
T d2o4ta1 30 ELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDALIGDSKTYAD---LYQESIQQ 87 (90)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHTTSCSHHHHH---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHhhchhhHH---HHHHHHHh
Confidence 45566788899999999999999999999984 4777788777766543 34444443
No 4
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=17.24 E-value=1e+02 Score=19.66 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhhcCc--hhHHhhchHHHhHHH
Q psy17978 112 QWRQMLFLFSKTLDEWINFQNNWLYLESIFTG--PDIQKQLPNESKLFT 158 (174)
Q Consensus 112 ~w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s--~dI~~qLp~E~~~F~ 158 (174)
.|......+.++|+.+.+.|..=.-.+.||+. ......|-.+++++.
T Consensus 50 ~~~~~~~il~~Il~l~eea~~~G~~v~~v~G~D~~~f~deli~~~~~~~ 98 (112)
T d2hh6a1 50 DWQDTKRIFGGILDLFEEGAAEGKKVTDLTGEDVAAFCDELMKDTKTWM 98 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHHHTTSCBHH
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHHhhhhH
Confidence 46677788999999999999999999999984 366666766666654
No 5
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=16.78 E-value=1.1e+02 Score=18.32 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhcCc--hhHHhhchHHHhHH
Q psy17978 113 WRQMLFLFSKTLDEWINFQNNWLYLESIFTG--PDIQKQLPNESKLF 157 (174)
Q Consensus 113 w~~~L~~~~~~l~~w~~~Q~~W~yLe~IF~s--~dI~~qLp~E~~~F 157 (174)
+......+.++|+.+...|..=.-.+.||+. ......|-.++|.|
T Consensus 35 ~~~~~~il~dil~l~eea~~~G~~v~ev~G~D~~~f~deli~~~k~~ 81 (82)
T d2o3la1 35 GMDMLHIQYELIDLFEAGAAEGRQVLDITGEDVASFADELVANAKTY 81 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHHHHhcccc
Confidence 4555677889999999999999999999984 46677777777765
No 6
>d2j9ua1 a.24.28.1 (A:148-241) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.20 E-value=1e+02 Score=19.10 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=31.8
Q ss_pred ecChHHHHHHHHHhHHHHHHHhhchhhhhHHHHHHHHHHHHHHHH
Q psy17978 77 LAGLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFS 121 (174)
Q Consensus 77 l~~~d~i~~~led~~~~L~~m~~S~~~~~f~~~v~~w~~~L~~~~ 121 (174)
+...|+|.-.|.|-+..++.+..+- -..+..|..|..+|+.+.
T Consensus 24 ~~a~DqLhPlL~dL~~slnrl~~~d--fegk~kv~~Wl~~Ln~M~ 66 (94)
T d2j9ua1 24 YNAKDQLHPLLAELLISINRVTRDD--FENRSKLIDWIVRINKLS 66 (94)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHCCCC--CTTHHHHHHHHHHHHTSC
T ss_pred CcchhhhchhHHHHHHHHHhcCccc--cchHHHHHHHHHHHhCCc
Confidence 3568899999999888888874322 233678999999998654
No 7
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.78 E-value=1.6e+02 Score=17.18 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17978 101 RQVAQIRESAEQWRQMLFLFSKTLDEWI 128 (174)
Q Consensus 101 ~~~~~f~~~v~~w~~~L~~~~~~l~~w~ 128 (174)
.-...|......|...+..+.+.|+..-
T Consensus 45 ~A~~af~~~~~~w~~~~~~l~~~L~~i~ 72 (99)
T d1wa8a1 45 AAGTAAQAAVVRFQEAANKQKQELDEIS 72 (99)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355789999999999999988887653
No 8
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=10.62 E-value=83 Score=21.21 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=32.7
Q ss_pred CeeeecChHHHHHHHHHhHHHHHHHhhchhhhhHHHHHHHHHHHHHHHH
Q psy17978 73 NVFILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFS 121 (174)
Q Consensus 73 ~~~il~~~d~i~~~led~~~~L~~m~~S~~~~~f~~~v~~w~~~L~~~~ 121 (174)
++.|+++....+..|-+.+. .-..++....-.+++.+|.+.|..+.
T Consensus 137 ~~~i~~D~~~~l~~L~~~l~---~~~~~~~~~~~~~~~~~wr~~l~~~~ 182 (183)
T d2ez9a1 137 DIAVLADAQKTLAAILAQVS---ERESTPWWQANLANVKNWRAYLASLE 182 (183)
T ss_dssp SEEEESCHHHHHHHHHHTCC---CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECHHHHHHHHHHHhh---hcCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 67888888888777766432 22455566677788899998887664
No 9
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.21 E-value=1.3e+02 Score=18.61 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=22.6
Q ss_pred hhhhhHHHHhhcchhhHhcccccceeeeeeccCC
Q psy17978 38 PRNGEIVKKGYLKKMKIETTWKNLEFTCIPHRDS 71 (174)
Q Consensus 38 ~A~~E~~lE~~L~~~~i~~~W~~~~f~~~~~~~~ 71 (174)
..++--.+|.+|+ ++.-.|+ |.++||...
T Consensus 81 ktqkatileaslk--klipawe---ftiipyngq 109 (128)
T d1p4ea1 81 KTQKATILEASLK--KLIPAWE---FTIIPYNGQ 109 (128)
T ss_dssp SCSCHHHHHHHHH--HHSTTCE---EEEEESSCC
T ss_pred echhhHHHHHHHH--hhcccce---EEEeccCCc
Confidence 3456677899999 8888886 999999753
No 10
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=1.1e+02 Score=20.63 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=18.3
Q ss_pred HHhhhhcC-----chhHHhhchHHHhHHHHHHHHHH
Q psy17978 135 LYLESIFT-----GPDIQKQLPNESKLFTEVDKFWK 165 (174)
Q Consensus 135 ~yLe~IF~-----s~dI~~qLp~E~~~F~~vd~~~~ 165 (174)
.||+.||. .++|.+.++.-+..|..+.+..+
T Consensus 66 FYLe~V~p~~~~~~~~i~~~v~sLan~f~~L~~~L~ 101 (155)
T d2ilka_ 66 FYLEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLR 101 (155)
T ss_dssp HHHHHTHHHHHTTCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHH
Confidence 46777772 34666666666666666654433
Done!