RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17978
(174 letters)
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 141 bits (356), Expect = 2e-39
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 53 KIETTWKNLEFTCIPHRDSKNVFILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQ 112
+ W LE + ++ ++ G +++ L E L S++ + S E A
Sbjct: 170 GVREFWTTLELDLVNYQRK--CKLVRGWDDLFNKLAEHLNSISAMKMSPYYKVFEEEANH 227
Query: 113 WRQMLFLFSKTLDEWINFQNNWLYLESIFTG-PDIQKQLPNESKLFTEVDKFWKRI 167
W L LD WI+ Q W+YLE IF+G DI + LP ES F ++ + I
Sbjct: 228 WDDRLNKVRSLLDVWIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSINSEFIAI 283
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 136 bits (343), Expect = 1e-37
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 3/116 (2%)
Query: 53 KIETTWKNLEFTCIPHRDSKNVFILAGLEEVQTILDESLISLATILSSRQVAQIRESAEQ 112
+I+ WK ++ I H + ++ + ++ E L L ++ +S +
Sbjct: 229 RIKKFWKEAQYEVIEHSS--GLKLVREWDVLEQACKEDLEELVSMKASNYYKIFEQDCLD 286
Query: 113 WRQMLFLFSKTLDEWINFQNNWLYLESIFTGP-DIQKQLPNESKLFTEVDKFWKRI 167
L S+ W+ Q WL L I DIQ LP E+ F + +K I
Sbjct: 287 LESKLTKLSEIQVNWVEVQFYWLDLYGILGENLDIQNFLPLETSKFKSLTSEYKMI 342
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-05
Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 33/146 (22%)
Query: 57 TWKNLEFTC---IPHRDSKNVFILAG-------LEEVQTIL--DESLISLATILSSRQVA 104
W +C + R + L+ L+ L DE L L R
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQ 316
Query: 105 QIRESAEQWRQMLF-LFSKTLDEWINFQNNWLY-----LESIFTG------PDIQKQL-- 150
+ + ++++ + + +NW + L +I P +++
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 151 -----PNESKLFTEV-DKFWKRIDFR 170
P + + T + W +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKS 402
Score = 40.6 bits (94), Expect = 1e-04
Identities = 25/140 (17%), Positives = 52/140 (37%), Gaps = 27/140 (19%)
Query: 52 MKIETTWKNLEFTCIPHRDSKNVFILAGLE--EVQTILDESLISLATILSSRQVAQIRES 109
M ET ++ +D +VF A ++ + + + D +ILS ++ I S
Sbjct: 7 MDFETG--EHQYQY---KDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIMS 57
Query: 110 AEQWRQMLFLF-------SKTLDEWIN--FQNNWLYLESIFTGPDIQKQLPNE------S 154
+ L LF + + +++ + N+ +L S Q +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 155 KLFTEVDKFWKRIDFRRLKK 174
+L+ + F K + RL+
Sbjct: 118 RLYNDNQVFAKY-NVSRLQP 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.035
Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 51/146 (34%)
Query: 6 ALC---------D----VSKR------TPPMSKSGMTSGPGPNGPRPGRKLPRNGEIVKK 46
AL V R P + G S G PGR + +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR-SNYGMIAINPGRVAASFSQEALQ 1827
Query: 47 GYLKKMKIETTWK----NLEFTCIPHRDSKNV----FILAG----LEEVQTILDESLISL 94
++++ T W N NV ++ AG L+ V +L+ I L
Sbjct: 1828 YVVERVGKRTGWLVEIVNY-----------NVENQQYVAAGDLRALDTVTNVLNF--IKL 1874
Query: 95 ATILSSRQVAQIRESA--EQWRQMLF 118
I + ++++S E+ LF
Sbjct: 1875 QKI----DIIELQKSLSLEEVEGHLF 1896
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription,
resistance, antibiotic; 2.90A {Streptomyces lividans}
Length = 108
Score = 28.7 bits (65), Expect = 0.37
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 75 FILA------GLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLD 125
IL L+EV +LD+ L RQ + + ++M + ++
Sbjct: 50 QILFYRELGFPLDEVAALLDDPAADPRAHL-RRQHELLSARIGKLQKMAAAVEQAME 105
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 28.7 bits (63), Expect = 0.89
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 40 NGEIVKKGYLKKMKIETTWK 59
++ K GYL+K K +
Sbjct: 7 FSDVRKVGYLRKPK---SMH 23
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
seattle structural GE center for infectious disease,
hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
Length = 347
Score = 28.5 bits (64), Expect = 1.0
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 86 IL--DESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLDEWI 128
IL DES ++ S V ++ +R+MLF + ++ I
Sbjct: 23 ILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKEAMESAI 67
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2,
prote structure initiative; 1.70A {Streptomyces
coelicolor} SCOP: a.4.1.9 a.121.1.1
Length = 225
Score = 28.0 bits (63), Expect = 1.4
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 1 MSTIHALCDVSKRTPPMSKSG-MTSGPGPNGPRPGRKLPRN 40
M + H S + G M P RPG + R
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMPDPAAPGTLRPGGRTARI 41
>1r8d_A Transcription activator MTAN; protein-DNA complex,
transcription/DNA complex; 2.70A {Bacillus subtilis}
SCOP: a.6.1.3 PDB: 1jbg_A
Length = 109
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 79 GLEEVQTILDESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLD 125
L+E++ +LD L Q + + ++ +M+ +TL
Sbjct: 61 RLDEIKEMLDHPNFDRKAAL-QSQKEILMKKKQRMDEMIQTIDRTLL 106
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 26.2 bits (58), Expect = 3.0
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 40 NGEIVKKGYLKKM-KIETTWK 59
G I+K+G L K WK
Sbjct: 4 TGVIIKQGCLLKQGHRRKNWK 24
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 26.4 bits (58), Expect = 3.2
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 28 PNGPRPGRKLPRNGEIVKKGYLKKM-KIETTWK 59
+ +G +VK+GYL K WK
Sbjct: 3 SGSSGSLSTVELSGTVVKQGYLAKQGHKRKNWK 35
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
phosphoprotein, schiff base; HET: 13P; 1.70A
{Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A
3dfn_A 3dfo_A 3dfp_A ...
Length = 341
Score = 26.5 bits (59), Expect = 4.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 86 IL--DESLISLATILSSRQVAQIRESAEQWRQMLFLFSKTLDEWI 128
IL DES S+A L S E+ +RQ+L ++ I
Sbjct: 26 ILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNPCI 70
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein,
lipid degradation, phosphatidylinositol (3,
4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo
sapiens} SCOP: b.55.1.1
Length = 125
Score = 25.5 bits (56), Expect = 6.4
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 38 PRNGEIVKKGYLKKM-KIETTWK 59
P++ ++K GY K + WK
Sbjct: 9 PQDSAVIKAGYCVKQGAVMKNWK 31
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 25.5 bits (56), Expect = 6.8
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 36 KLPRNGEIVKKGYLKKM-KIETTWK 59
K G I+K+G L K WK
Sbjct: 11 KEEFRGVIIKQGCLLKQGHRRKNWK 35
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 25.5 bits (55), Expect = 7.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 40 NGEIVKKGYLKKMKIETTWK 59
+ IV +LK +W
Sbjct: 5 SSGIVMADWLKIRGTLKSWT 24
>1f16_A Protein (apoptosis regulator BAX, membrane isoform alpha); helical
protein; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 2k7w_A
Length = 192
Score = 25.5 bits (55), Expect = 9.1
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 94 LATILSSRQVAQIRESAEQWRQMLFLFSKTLDEWINFQNNWLYLESIFTGPDIQKQLPNE 153
L +V ++ + W L + L WI Q W L S F P Q
Sbjct: 120 LVLKALCTKVPELIRTIMGW--TLDFLRERLLGWIQDQGGWDGLLSYFGTPTWQTVTIFV 177
Query: 154 SKLFTEVDKFWKRI 167
+ + T WK++
Sbjct: 178 AGVLTASLTIWKKM 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.409
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,634,185
Number of extensions: 140301
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 31
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)