RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17978
         (174 letters)



>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
           mitochondrial polymerase gamma, N-terminal domain {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 290

 Score = 28.5 bits (63), Expect = 0.36
 Identities = 4/37 (10%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 121 SKTLDEWINFQNNWLYLESIFTGPDIQ-KQLPNESKL 156
            K    + +F      +E+++   D +       +  
Sbjct: 218 RKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVS 254


>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8
          (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 25.6 bits (55), Expect = 2.5
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 40 NGEIVKKGYLKKMKIETTWK 59
          +  IV   +LK      +W 
Sbjct: 5  SSGIVMADWLKIRGTLKSWT 24


>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 24.5 bits (52), Expect = 4.9
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 3/22 (13%)

Query: 42 EIVKKGYLKKMKIETTWKNLEF 63
          ++ K GYL+K K   +     F
Sbjct: 1  DVRKVGYLRKPK---SMHKRFF 19


>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
          (ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 100

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 17 MSKSGMTSGPGPNGPRPGR--KLPRNGEIVKKG 47
          M  S   S P P+  RP +   L RN    + G
Sbjct: 1  MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHG 33


>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 116

 Score = 24.5 bits (52), Expect = 5.7
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 36 KLPRNGEIVKKGYL-KKMKIETTWKNLEFTC 65
           +  +G +VK+GYL K+      WK   F  
Sbjct: 4  TVELSGTVVKQGYLAKQGHKRKNWKVRRFVL 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 659,823
Number of extensions: 28510
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 11
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)