BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1798
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 67/163 (41%), Gaps = 16/163 (9%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDV 174
+ C C S + H RTHTG KPY C ECG + DL +H +R H E
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHT---GEKP 77
Query: 175 RHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRP 234
C C K + L H + + + C C Q AH+R H R HTG +P
Sbjct: 78 YKCPECGKSF--SQRANLRAHQRTHTGEKP--YACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 235 FPCDMCEYSAAQKWNLKMHMH-------FLCHHCNR-FGSRDI 269
+ C C S +++ NL H + C C + F RD
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
Y+C C K D+ +H R HTGEKPY+C C +Q +++ H Q T E
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-----QRTHTGEK 104
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
++C C S L H R ++C C S N H
Sbjct: 105 P-----YACPECGKSFSQ------LAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Query: 135 RTHTGHKPYACTECG 149
RTHTG KPY C ECG
Sbjct: 154 RTHTGEKPYKCPECG 168
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 77/216 (35%), Gaps = 52/216 (24%)
Query: 39 GEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATETEL 98
GEKPY C C +++ + H Q T E + C C S + +L
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEH-----QRTHTGEKP-----YKCPECGKSFSD--KKDL 65
Query: 99 LDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDL 158
H R ++C C S R+N H RTHTG KPYAC ECG + L
Sbjct: 66 TRH----QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 159 RKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQ 218
R H +R H E C C K D
Sbjct: 122 RAH-QRTHT---GEKPYKCPECGKSFSRED------------------------------ 147
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
++ H R HTG +P+ C C S +++ L +H
Sbjct: 148 --NLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 71/210 (33%), Gaps = 75/210 (35%)
Query: 139 GHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKY 198
G KPYAC ECG + S L +H +R H E C C K + +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEH-QRTHT---GEKPYKCPECGKSFSDKKD--------- 64
Query: 199 CPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLC 258
+TR H R HTG +P+ C C S +Q+ NL+ H
Sbjct: 65 ----------------LTR-------HQRTHTGEKPYKCPECGKSFSQRANLRAHQ---- 97
Query: 259 HHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSR---HKGDVKKHV 315
R + + CP + ++ H
Sbjct: 98 --------------------------------RTHTGEKPYACPECGKSFSQLAHLRAHQ 125
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
R HTGEKPY+C C ++ ++H H +
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDV 174
++C C S SN +H RTHTG KPY C ECG + S+DL+KH +R H E
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHT---GEKP 60
Query: 175 RHCVHCNKEMHNLD 188
C C K D
Sbjct: 61 YKCPECGKSFSRSD 74
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
++C C S S+ +H RTHTG KPY C ECG + S L +H +R H
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRH-QRTHQ 84
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y+C C +++KH R HTGEKPY+C C +Q+S + H +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
Y+C C +++KH R HTGEKPY+C C +Q+S + H +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 36/114 (31%)
Query: 141 KPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCP 200
KPY C ECG + S++L+KH +R H E C C K SF
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHT---GEKPYKCPECGK-------SFS-------- 43
Query: 201 SLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
QS+ +++H R HTG +P+ C C S ++ +L H
Sbjct: 44 -----------------QSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQ 80
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
Y+C C D++KH R HTGEKPY+C C +++ + H + N
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQN 85
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y+C C D++KH R HTGEKPY+C C +++ + H +
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 30/147 (20%)
Query: 204 TVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNR 263
+ G +C C +++ H RKHTG +PF C C +K N
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKEN-------------- 50
Query: 264 FGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKP 323
L+EH + + R+ ++ C VC R + +++ H+ HTGE P
Sbjct: 51 --------LLEHEARNCM--------NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 324 YECNLCDYKATQNSSIHFHMKLKHNMP 350
Y+C+ C + Q + HM H+ P
Sbjct: 95 YKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 33/122 (27%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFL 192
H R HTG KP+ C +CG +L +H + R+C++ ++++
Sbjct: 26 HNRKHTGEKPFECPKCGKCYFRKENLLEH-----------EARNCMNRSEQV-------- 66
Query: 193 LKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKM 252
F C +C R+ +R H+ HTG P+ C C QK +L+
Sbjct: 67 --------------FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQS 112
Query: 253 HM 254
HM
Sbjct: 113 HM 114
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%)
Query: 30 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGD 89
+K H RKHTGEKP+EC C + F EN++
Sbjct: 23 LKVHNRKHTGEKPFECPKCG-----------------KCYFRKENLL------------- 52
Query: 90 LSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECG 149
E E + CM S F C C+ + + R H+ +HTG PY C+ C
Sbjct: 53 -----EHEARN-CMNRSEQV-----FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Query: 150 YASILSTDLRKHIERIH 166
+ DL+ H+ ++H
Sbjct: 102 QQFMQKKDLQSHMIKLH 118
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 10 RNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 62
R+ ++ C VC R + +++ H+ HTGE PY+C+ C + Q + HM
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 208 QCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+C C R + ++ HLR HTG +P+ C+ CEY+AAQK +L+ H+
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHL 52
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 120 CRYSNKF-RSNFLR--HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
C Y KF RSN+ H+RTHTG KPY C C YA+ T LR H+ER H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 298 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
C C R + H+R HTGEKPY+C C+Y A Q +S+ +H++ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 17 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
C C R + H+R HTGEKPY+C C+Y A Q +S+ +H++
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLE 53
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 36/119 (30%)
Query: 113 GWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVE 172
G +C C + H+R HTG KPY C C YA+ S+ L KH+ RIH
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIH-----S 60
Query: 173 DVRHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTG 231
D R F+C +C Y +R S+ + HLR HTG
Sbjct: 61 DERP------------------------------FKCQICPYASRNSSQLTVHLRSHTG 89
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 33/114 (28%)
Query: 208 QCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSR 267
+C +C + ++ H+R HTG +P+ C C+Y+AA +L H+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI----------- 58
Query: 268 DIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGE 321
HS D R ++C +CPY SR+ + H+R HTG+
Sbjct: 59 -------HS------------DER---PFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C VC K +K H+R HTG KPY+C CDY A +SS++ H+++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C VC K +K H+R HTG KPY+C CDY A +SS++ H+++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 11 NVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
V Y+C C Y + + KH+R H+ E+P++C +C Y + +S + H++
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 292 NVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
V Y+C C Y + + KH+R H+ E+P++C +C Y + +S + H++
Sbjct: 33 GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
++C C Y S+ + +HLR H+ RPF C +C Y++ L +H+
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE 40
++C +CPY SR+ + H+R HTG+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVED 173
FQC C + + HIRTHTG KP+AC CG S + ++H + H+ +ED
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILED 62
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHNMPFI 352
++C +C + H+R HTGEKP+ C++C K ++ H ++H +P +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPIL 60
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 88
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 121 RYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
R+S+ SN RHIR HTG KP+ C C S L HI
Sbjct: 15 RFSDS--SNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
S+++ +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 19 SSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 88
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+S + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 18 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
RHIR HTG KP+ C C S L HI
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 87
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 16 RCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 297 RCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+S + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 17 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 73
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
RHIR HTG KP+ C C S L HI
Sbjct: 19 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 53
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
FQC C + + HIRTHTG KP+AC CG +D RK +IH+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG-RKFARSDERKRHTKIHL 86
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 16 RCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 297 RCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+S + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 18 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
RHIR HTG KP+ C C S L HI
Sbjct: 20 DELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 88
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S D+ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S D+ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+SA + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 18 RSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
++ RHIR HTG KP+ C C S L HI
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 88
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S G + +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S G + +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
QS + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
+ RHIR HTG KP+ C C S L HI
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
FQC +C+ +S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQ 169
FQC C + + HIRTHTG KP+AC CG +D RK +IH+ Q
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR-KFARSDERKRHTKIHLRQ 88
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+SA + +H+R HTG++PF C +C + ++ +L H+ F C C R +R
Sbjct: 18 RSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
+ RHIR HTG KP+ C C S L HI
Sbjct: 20 AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y+C C R+KG++ H HTGEKPY CN+C + + +++ H ++
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
Y+C C R+KG++ H HTGEKPY CN+C + + +++ H ++
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
++C RC+ S +++ N H HTG KPY C CG +L+ H RIH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT-RIH 68
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
++C C R ++ H HTG +P+ C++C + NLK H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 42
YRC +C ++K H R H+GEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 323
YRC +C ++K H R H+GEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 9 RRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+R Y+C C H D+ KH R HTGEKPY+C+ C Q S + H +V
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
++C C S S+ +H RTHTG KPY C ECG A I + L H R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHT 70
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 290 RRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
+R Y+C C H D+ KH R HTGEKPY+C+ C Q S + H ++
Sbjct: 13 QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
++C C S+ + +H R HTG +P+ CD C + Q+ +L H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
FQC +C+ Q A + H+R HTG +PF CD+C
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDIC 68
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S K ++ H+R HTG+KP++C +C +Q +S++ H++
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT 56
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S K ++ H+R HTG+KP++C +C +Q +S++ H++
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR 55
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYK------ATQNSSIHFHMK 63
++C +C + + H+R HTGEKP+ C++C K T+++ IH K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYK------ATQNSSIHFHMK 344
++C +C + + H+R HTGEKP+ C++C K T+++ IH K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECG 149
FQC C + +++ HIRTHTG KP+AC CG
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNR 263
Q ++ H+R HTG++PF C +C + +Q+ +L H+ F C C R
Sbjct: 18 QKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 121 RYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
R+S K +N HIR HTG KP+ C C L HI
Sbjct: 15 RFSQK--TNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
FQC +C+ Q + QH+R HTG +PF CD+C
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDIC 68
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
M R + CP S K ++ H+R HTG+KP++C +C +Q++ ++ H++
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT 56
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 295 MYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
M R + CP S K ++ H+R HTG+KP++C +C +Q++ ++ H++
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR 55
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECG--YASILSTD 157
FQC C + + +HIRTHTG KP+AC CG +A++ + D
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRD 79
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 15 YRCFVC-PYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C S+H G + +H+R HTGEKP+ C++C K + H K+
Sbjct: 35 FQCRICMRNFSQHTG-LNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI 84
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 296 YRCFVC-PYLSRHKGDVKKHVRKHTGEKPYECNLCDYK 332
++C +C S+H G + +H+R HTGEKP+ C++C K
Sbjct: 35 FQCRICMRNFSQHTG-LNQHIRTHTGEKPFACDICGRK 71
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-------FLCHHCNR 263
Q ++ H+R HTG++PF C +C + +Q L H+ F C C R
Sbjct: 18 QKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 121 RYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
R+S K +N HIR HTG KP+ C C T L +HI
Sbjct: 15 RFSQK--TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 23/48 (47%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNK 182
RTHTG KPYAC+ C L H +R H P FV C C K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK 55
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHNMPFIP 353
G R HTGEKPY C+ CD Q + H K H+ F+P
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVP 45
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
G R HTGEKPY C+ CD Q + H K
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHMH-----------FLCHHCNR-FGSRDIGDLIE 274
R HTG +P+ C C+ + QK L MH F+C C + F R+ +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT--MAR 65
Query: 275 HSTQCS 280
H+ C+
Sbjct: 66 HADNCA 71
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
+ C C + S ++H R HTG KPY C ECG A ++ L H +RIH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHT 66
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHNMP 350
Y C C + +H R HTGEKPY+C C +QNS + H ++ + P
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y C C + +H R HTGEKPY+C C +QNS + H ++
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+ C C +S+ + QH R HTG +P+ C C + +Q L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 141 KPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKH 195
KPY C ECG A S+ L +H +R+H E C+ C K S L+ H
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVHTG---EKPYKCLECGKAFS--QNSGLINH 61
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
Y C C K D+KKH HTGEKP++C +C +Q+S++ H +
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
Y C C K D+KKH HTGEKP++C +C +Q+S++ H +
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
F C +C ++S+ + HL H+ RP+PC C QK ++K H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIER 164
+S+ +H HTG KP+ C CG A S++L H +
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 36/117 (30%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDV 174
F C C S K S H+ H+ +PY C CG +D++KH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT------------ 49
Query: 175 RHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTG 231
+H ++ H +C +C QS+++ H RKHTG
Sbjct: 50 --FIHTGEKPH----------------------KCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 52/133 (39%), Gaps = 39/133 (29%)
Query: 126 FRSN--FLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKE 183
FR N +H+ TH G + + C ECG A + S+ L++H Q V C E
Sbjct: 17 FRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-------QLVHTGEKPFQCTFE 68
Query: 184 MHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPF--PCDMCE 241
C ++ F +R H+R HTG RP+ P D C
Sbjct: 69 G--------------CGKRFSLDFN-------------LRTHVRIHTGDRPYVCPFDGCN 101
Query: 242 YSAAQKWNLKMHM 254
AQ NLK H+
Sbjct: 102 KKFAQSTNLKSHI 114
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 117 CFRCRYSNKFRSNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
C C + S RH HTG KP+ CT CG L +LR H+ RIH
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV-RIH 87
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 34/143 (23%)
Query: 203 RTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCN 262
RT+ C + R ++ MR+HL H G R C C + + LK H L H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ--LVH--- 57
Query: 263 RFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEK 322
E QC+ G +R + + +++ HVR HTG++
Sbjct: 58 ---------TGEKPFQCTFEGCG----KRFSLDF-------------NLRTHVRIHTGDR 91
Query: 323 PYECNL--CDYKATQNSSIHFHM 343
PY C C+ K Q++++ H+
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHI 114
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 121 RYSNKFRSNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHI 162
R+S F N H+R HTG +PY C C ST+L+ HI
Sbjct: 73 RFSLDF--NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 29 DVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKVGVQA 68
+++ HVR HTG++PY C C+ K Q++++ H+ +A
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKA 120
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 35/109 (32%)
Query: 220 AHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHST 277
+H++ H RKHTG +P+ CD CE ++ LK H R G
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ-----------RRHTG------- 63
Query: 278 QCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
V ++C C +K H R HTGEKP+ C
Sbjct: 64 ---------------VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 38/112 (33%)
Query: 128 SNFLRHIRTHTGHKPYAC--TECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMH 185
S+ H R HTG KPY C +C S L++H R
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR--------------------- 60
Query: 186 NLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
H P FQC C +S H++ H R HTG +PF C
Sbjct: 61 ---------HTGVKP------FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 61/159 (38%)
Query: 16 RCFVCPYLSRHK-----GDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK--VGV 66
R F+C Y +K ++ H RKHTGEKPY+C+ C+ + +++ + H + GV
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 67 QAIFTSENVVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKF 126
+ FQC C+ KF
Sbjct: 65 KP----------------------------------------------FQCKTCQ--RKF 76
Query: 127 -RSNFLR-HIRTHTGHKPYAC--TECGYASILSTDLRKH 161
RS+ L+ H RTHTG KP++C C S +L +H
Sbjct: 77 SRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 311 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+K+H R+HTG KP++C C K +++ + H +
Sbjct: 54 LKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 297 RCFVCPYLSRHK-----GDVKKHVRKHTGEKPYECNLCD 330
R F+C Y +K ++ H RKHTGEKPY+C+ D
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD 43
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+S +++H R+HTG +PF C C+ ++ +LK H
Sbjct: 50 RSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 11 NVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
V ++C C +K H R HTGEKP+ C
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 285 AYLNDRRNVIMYRCFV--CPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
A+L Y+C C + ++ +H RKHTG KP++C +C+ +++ + H
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Query: 343 MKLKHN 348
MK N
Sbjct: 95 MKRHQN 100
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 4 AYLNDRRNVIMYRCFV--CPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
A+L Y+C C + ++ +H RKHTG KP++C +C+ +++ + H
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Query: 62 MK 63
MK
Sbjct: 95 MK 96
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPC--DMCEYSAAQKWNLKMHMH-------FLCHHCN 262
C + +S+H++ HLR HTG +P+ C + C++ A+ L H F C CN
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 263 RFGSR 267
R SR
Sbjct: 83 RSFSR 87
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
C + +S + +H RKHTG +PF C +C S ++ +L +HM
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 30 VKKHVRKHTGEKPYECNL--CDYKATQNSSI--HFHMKVGVQAI 69
+K H+R HTGEKPY+C CD++ ++ + H+ G +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF 76
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 311 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK 344
+K H+R HTGEKPY+C CD++ ++ + H +
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 128 SNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIER 164
S+ H+RTHTG KPY CT C + S +L +H +
Sbjct: 31 SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 129 NFLRHIRTHTGHKPYACTECGYASILSTDLRKHIER 164
RH R HTG KP+ C C + S L H++R
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
G R H+GEKPYEC +C + TQ+ ++ H+ KH
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 62
G R H+GEKPYEC +C + TQ+ ++ H+
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHM---------HFLCHHCNRFGSR--DIG 270
R H+G +P+ C +C Q +KMH+ F C HC+ +R D+G
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCN 181
RTH+G KPY C C S ++ HI + H + HC HC+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK--FHCPHCD 52
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 207 FQCYLCLYITRQSAHMRQH-LRKHTGR-RPFPCDMCEYSAAQKWNLKMHM 254
++CY+C QS M+ H L+KHT F C C+ A+K +L +H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 62
Y C VC + K + H++ HTG KPYECN+C + S H H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 343
Y C VC + K + H++ HTG KPYECN+C + S H H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
+ C C K + + + H++ HTG KPY C C + +H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
+ C +C + H+ H++ HTG +P+ C++C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCH 259
+ C C ++ + +++H+R HT RP+ C C +S K NL HM H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIE 163
+ C C K S +HIRTHT +PY CT C ++ +L KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLK 346
Y C C + +KKH+R HT +PY C C++ ++ HMK K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
Y C C + +KKH+R HT +PY C C++ ++ HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
C + +S + +H RKHTG RPF C C+ + ++ +L +HM
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 86
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 DVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
++ +H RKHTG +P++C CD +++ + HMK
Sbjct: 53 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 310 DVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++ +H RKHTG +P++C CD +++ + HMK
Sbjct: 53 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+S+H++ HLR HTG +P+ CD C + A+ L H F C C+R SR
Sbjct: 20 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR 78
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 120 CRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIER 164
C + RH R HTGH+P+ C +C A S L H++R
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 88
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 128 SNFLRHIRTHTGHKPYAC--TECGYASILSTDLRKHIER 164
S+ H+RTHTG KPY C CG+ S +L +H +
Sbjct: 22 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 30 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK 63
+K H+R HTGEKPY C+ C +K ++ + H +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 311 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK 344
+K H+R HTGEKPY C+ C +K ++ + H +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
C + +S + +H RKHTG RPF C C+ + ++ +L +HM
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 DVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
++ +H RKHTG +P++C CD +++ + HMK
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 310 DVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++ +H RKHTG +P++C CD +++ + HMK
Sbjct: 52 ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
+S+H++ HLR HTG +P+ CD C + A+ L H F C C+R SR
Sbjct: 19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR 77
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 127 RSNFL-RHIRTHTGHKPYACTECGYASILSTDLRKHIER 164
RS+ L RH R HTGH+P+ C +C A S L H++R
Sbjct: 49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 128 SNFLRHIRTHTGHKPYAC--TECGYASILSTDLRKHIER 164
S+ H+RTHTG KPY C CG+ S +L +H +
Sbjct: 21 SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 30 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK 63
+K H+R HTGEKPY C+ C +K ++ + H +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 311 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMK 344
+K H+R HTGEKPY C+ C +K ++ + H +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGS 266
F C +C + H+++H R HT +P+PC +C + ++ L H + S
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR-------DLLIRHAQKIHS 55
Query: 267 RDIGD 271
++G+
Sbjct: 56 GNLGE 60
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 298 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
C VC + +K+H R HT EKPY C LC+ T+ + H + H+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 17 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
C VC + +K+H R HT EKPY C LC+ T+ + H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVE 172
F C C + + + RH R+HT KPY C C A L +H ++IH E
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 114 WFQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC--TECGYASILSTDLRKH 161
W +C R S K + + HIR HTG KP+ C CG S +L+ H
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH 255
C I +S +++ H R HTG +PF C+ C+ A + K HMH
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMH 143
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 16 RCFVCPY-----LSRHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
+ F CP+ + ++K H R HTGEKP++C CD + +S HM V
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 225 HLRKHTGRRPFPCDM--CEYSAAQKWNLKMH 253
H+R HTG +PFPC C A+ NLK+H
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIH 111
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 297 RCFVCPY-----LSRHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 343
+ F CP+ + ++K H R HTGEKP++C CD + +S HM
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 120 CRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILS--TDLRKHIERIH 166
CR S N H+R+HTG KPY C G + S +D KH R H
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 34/128 (26%)
Query: 225 HLRKHTGRRPFPC--DMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVM 282
H+R+HTG +P C + C S ++ NLK H+ R + + + EH CS
Sbjct: 58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL--------RSHTGEKPYMCEHEG-CS-K 107
Query: 283 GIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIH 340
+ +DR K R H+ EKPY C L C + T SS+
Sbjct: 108 AFSNASDR--------------------AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 341 FHMKLKHN 348
H+K H
Sbjct: 148 KHVKTVHG 155
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 29 DVKKHVRKHTGEKPYECN 46
++K H+R HTGEKPY C
Sbjct: 84 NLKTHLRSHTGEKPYMCE 101
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 21 PYLSRHKG---------DVKKHV-RKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
PY+ H+G D KH R H+ EKPY C L C + T SS+ H+K
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 201 SLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH----- 255
S + G C +C I R H+ +H H+G +P+ C +C +K + H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 256 ----FLCHHCNRFGSR 267
++C C + SR
Sbjct: 62 VGKPYICQSCGKGFSR 77
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMKLKHNMP 350
Y C VC + K + HVR H G KPY C C ++ ++ H+K H+ P
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 17 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
C +C + R + +H H+GEKPY C +C + + + +H++
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 298 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
C +C + R + +H H+GEKPY C +C + + + +H++
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGH--KPYACTECGYASILSTDLRKHIERIH 166
+ C C K + H+R+H G KPY C CG L HI+++H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMK 63
Y C VC + K + HVR H G KPY C C ++ ++ H+K
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHMH 255
+PF C +CEY+ K NLK HM+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMN 30
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
++C +C Y +R K ++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
++C +C Y +R K ++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHT 230
F+C LC Y TR ++++ H+ +H+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHS 33
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 12 VIMYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
V R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 293 VIMYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
V R + CP S ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 200 PSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
P +R C +S + +H+R HTG++PF C +C + ++ +L H+
Sbjct: 15 PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 130 FLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
RHIR HTG KP+ C C S L HI
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 206 GFQCYLCLYITRQSAHMRQHLRKHT---GRRPFPCDMC 240
G QC +C + RQ A + H RKH FPC+ C
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC 44
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIERIH 166
+G KPY C ECG A L + L H ERIH
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIH-ERIH 33
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIERIH 166
+G KPY CTECG A I + H ERIH
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITH-ERIH 33
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y+C C Y S K ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y+C C Y S K ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
++C +C Y++ ++N H+R HTG K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRR 233
++C C Y + A++ HLRKHTG +
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 141 KPYACTECGYASILSTDLRKHIER 164
KPY C +C YAS + +L H+ +
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRK 31
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.66, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKP 142
F+C C+ + +SN + H RTHTG KP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 14/158 (8%)
Query: 205 VGFQCYLCLYITRQSAH-----MRQHLRKHTGRRPFPC--DMCEYSAAQKWNLKMHMHFL 257
V ++ Y+C + +A+ ++ HL KHTG +PFPC + CE +L H L
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS--L 65
Query: 258 CHHCNR-FGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFV--CPYLSRHKGDVKKH 314
H + F G + +T+ ++ + +Y C C + +K H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 315 VRKHTGEKPYEC--NLCDYKATQNSSIHFHMKLKHNMP 350
HT + PYEC CD + + S + H K+ P
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 163
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 19/139 (13%)
Query: 130 FLRHIRTHTGHKPYACTE--CGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEM--H 185
RH THTG K + C C +++KH R H + V H +C K H
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKH 119
Query: 186 NLDESFLLKHCKYCPSLRTVGFQC--YLCLYITRQSAHMRQHLRKHTGRRPFPC---DMC 240
N + H + P ++C C + +++H + H G +PC D C
Sbjct: 120 NQLKVHQFSHTQQLP------YECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSC 170
Query: 241 EYSAAQKWNLKMHMHFLCH 259
+ + W L + CH
Sbjct: 171 SF-VGKTWTLYLKHVAECH 188
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 220 AHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
A +R H R H RPF C+ C + Q NL HM
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 308 KGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
K ++ H R H ++P++CN C + Q S++ HMK H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 27 KGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
K ++ H R H ++P++CN C + Q S++ HMK
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKP++C C + TQNS +H H +V
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMKL 345
EKP++C C + TQNS +H H ++
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRV 34
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
F+C C RQ+ H+ HLR HTG +P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKPYEC++C T+ S +H H ++
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQI 34
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMKL 345
EKPYEC++C T+ S +H H ++
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQI 34
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIE 163
F C C + + S RH R H G++P +C ECG +++ +H++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 298 CFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHNMP 350
C C R + +H R H G +P C C S ++ H+K+ N P
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP 59
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKP++C C + TQNS +H H +V
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMKL 345
EKP++C C + TQNS +H H ++
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
FQC C Q++H+ H R HTG +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMH 253
+S+H++ H R HTG +PF C CE A+ L H
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 30 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
+K H R HTGEKP+ C+ C+ + ++ + H +
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 126 FRSNFLR-HIRTHTGHKPYACTECG 149
F+S+ L+ H RTHTG KP++C+ G
Sbjct: 30 FKSSHLKAHTRTHTGEKPFSCSWKG 54
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 311 VKKHVRKHTGEKPYECNL 328
+K H R HTGEKP+ C+
Sbjct: 35 LKAHTRTHTGEKPFSCSW 52
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 200 PSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH---- 255
PS F C C +S ++ H R HT RP+ CD+C + ++ +L+ H +
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 256 ---FLCHHCNR 263
F C C +
Sbjct: 71 EKPFKCQECGK 81
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 12/95 (12%)
Query: 251 KMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGD 310
K F+C C R ++ LI T D R Y C +C R +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTH---------TDERP---YTCDICHKAFRRQDH 60
Query: 311 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKL 345
++ H H+ EKP++C C Q+ ++ H L
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+ C +C R+ H+R H H+ +PF C C Q L +H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 18 FVCPYLSRH---KGDVKKHVRKHTGEKPYECNLC 48
F+C + RH ++ H R HT E+PY C++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC 51
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 129 NFLRHIRTHTGHKPYACTECGYASILSTDLRKH 161
N L H RTHT +PY C C A LR H
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQA 68
Y C +C R + ++ H H+ EKP++C C Q+ ++ H + +Q
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 210 YLCLYITRQSAH-----MRQHLRKHTGRRPFPC 237
Y+C + +A+ ++ HL KHTG +PFPC
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPC 36
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIHMPQ 169
KPY C ECG A + ++L KH ++IH Q
Sbjct: 11 KPYICAECGKAFTIRSNLIKH-QKIHTKQ 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
KPY+C CG A +LS L +H+ R+H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL-RVH 35
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIERIH 166
+G KPY CT+CG A L + L H +R H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIH-QRTH 33
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
++C +C Q AH+ QH + HTG +P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 42
YRC C K ++ +H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 4.5, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 323
YRC C K ++ +H R HTGEKP
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIHM 167
KPY C ECG A I + L++H +RIH
Sbjct: 11 KPYNCEECGKAFIHDSQLQEH-QRIHT 36
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 111 IPGWFQCFRCRYSNK---FRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
I W + + CRY K +H HTG + Y C CG + I + HI+ +H
Sbjct: 44 IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKPY+CN C TQNS + H +V
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRV 34
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 138 TGHKPYACTECGYASILSTDLRKH 161
+G KPY+C ECG A + L H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVH 29
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
++C +C QS+H++ H R HTG +P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKHN 348
K Y+C C+Y++ +S++ H+K KH+
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHS 27
>pdb|4AJ5|A Chain A, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|B Chain B, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|C Chain C, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|D Chain D, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|E Chain E, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|F Chain F, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|G Chain G, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|H Chain H, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|I Chain I, Crystal Structure Of The Ska Core Complex
pdb|4AJ5|J Chain J, Crystal Structure Of The Ska Core Complex
Length = 91
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 177 CVHCNKEMHNLDESFLLKHCKYCPSLRTV 205
C H N+++ N+ ++ L++C P+L+TV
Sbjct: 10 CSHVNEKIGNIKKTLSLRNCGQEPTLKTV 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
++C C + Q++H+ H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKPY+CN C TQNS + H ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRI 34
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 319 TGEKPYECNLCDYKATQNSSIHFHMKL 345
+GEKPY+C C +Q S+ H +L
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL 32
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 42
Y+C C + RH + +H R HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKP 323
Y+C C + RH + +H R HTGEKP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
EKPY+CN C TQNS + H ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRI 34
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMKL 345
EKPY+CN C TQNS + H ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRI 34
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
++C C + K +S+ + H R+HTG KP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSG 42
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 38 TGEKPYECNLCDYKATQNSSIHFHMKV 64
+GEKPY C C TQ+S + H +V
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRV 32
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 9.8, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIERIH 166
T KPY C+ECG A I ++ L H +R H
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVH-QRTH 35
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.139 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,872,411
Number of Sequences: 62578
Number of extensions: 438097
Number of successful extensions: 2191
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 918
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)