RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1798
         (353 letters)



>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain. 
          Length = 26

 Score = 32.4 bits (74), Expect = 0.017
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 29 DVKKHVRKHTGEKPYECNLCDYKATQ 54
          ++++H+R HTGEKPY+C +C    + 
Sbjct: 1  NLRRHMRTHTGEKPYKCPVCGKSFSS 26



 Score = 32.4 bits (74), Expect = 0.017
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 310 DVKKHVRKHTGEKPYECNLCDYKATQ 335
           ++++H+R HTGEKPY+C +C    + 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26



 Score = 32.0 bits (73), Expect = 0.021
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 129 NFLRHIRTHTGHKPYACTECGYA 151
           N  RH+RTHTG KPY C  CG +
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKS 23



 Score = 32.0 bits (73), Expect = 0.022
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 221 HMRQHLRKHTGRRPFPCDMCEYSAAQ 246
           ++R+H+R HTG +P+ C +C  S + 
Sbjct: 1   NLRRHMRTHTGEKPYKCPVCGKSFSS 26


>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 558

 Score = 31.1 bits (71), Expect = 0.92
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 177 CVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLC 212
           CV C +    L + ++   C  C      G QC  C
Sbjct: 129 CVSCER---FLPDRYVEGTCPKCGGEDARGDQCENC 161


>gnl|CDD|220801 pfam10543, ORF6N, ORF6N domain.  This domain was identified by Iyer
           and colleagues.
          Length = 87

 Score = 28.7 bits (65), Expect = 1.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 124 NKFRSNFLRHIRTHTGHKPYACTECGYA 151
            + RS F+    +    KPY  TE G A
Sbjct: 55  KELRSQFVTSKISGRARKPYLFTERGAA 82


>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional.
          Length = 190

 Score = 28.4 bits (64), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 4/25 (16%)

Query: 212 CLYITRQSAHMRQHLRKHTGRRPFP 236
            L +T++S     HLRKH G+  FP
Sbjct: 45  TLLLTQRSI----HLRKHAGQVAFP 65


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.329    0.139    0.476 

Gapped
Lambda     K      H
   0.267   0.0655    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,754,622
Number of extensions: 1469090
Number of successful extensions: 1743
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1740
Number of HSP's successfully gapped: 58
Length of query: 353
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 255
Effective length of database: 6,590,910
Effective search space: 1680682050
Effective search space used: 1680682050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.7 bits)