RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1798
(353 letters)
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 73.3 bits (181), Expect = 3e-16
Identities = 37/152 (24%), Positives = 52/152 (34%), Gaps = 41/152 (26%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
C C K +K H RKHTGEKP+EC C + ++ H + SE
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA--RNCMNRSEQ 65
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
V + C C FR R H+
Sbjct: 66 V-----------FT-------------CSVCQE---------TFRR------RMELRLHM 86
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+HTG PY C+ C + DL+ H+ ++H
Sbjct: 87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 58.7 bits (143), Expect = 5e-11
Identities = 33/142 (23%), Positives = 49/142 (34%), Gaps = 37/142 (26%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKH--IERIHMPQFVE 172
+C C + H R HTG KP+ C +CG +L +H ++ E
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS---E 64
Query: 173 DVRHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGR 232
V C C + +F R+ +R H+ HTG
Sbjct: 65 QVFTCSVCQE-------TF-------------------------RRRMELRLHMVSHTGE 92
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
P+ C C QK +L+ HM
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHM 114
Score = 57.1 bits (139), Expect = 2e-10
Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 44/138 (31%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHH-------CNRFGSRDI 269
+++ H RKHTG +PF C C +K NL H C + C+
Sbjct: 18 LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS------- 70
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 329
C F R + +++ H+ HTGE PY+C+ C
Sbjct: 71 --------VCQ----------------ETF------RRRMELRLHMVSHTGEMPYKCSSC 100
Query: 330 DYKATQNSSIHFHMKLKH 347
+ Q + HM H
Sbjct: 101 SQQFMQKKDLQSHMIKLH 118
Score = 54.0 bits (131), Expect = 2e-09
Identities = 20/133 (15%), Positives = 33/133 (24%), Gaps = 48/133 (36%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATET 96
+G EC C K + H + T E +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-----KHTGEKP-----------F--------- 36
Query: 97 ELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIR---THTGHKPYACTECGYASI 153
C +C + C+ + N L H + + + C+ C
Sbjct: 37 ----ECPKCGK---------CYFRK------ENLLEHEARNCMNRSEQVFTCSVCQETFR 77
Query: 154 LSTDLRKHIERIH 166
+LR H H
Sbjct: 78 RRMELRLH-MVSH 89
Score = 44.4 bits (106), Expect = 4e-06
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
C C K +K H RKHTGEKP+EC C + ++ H
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 71.3 bits (176), Expect = 7e-15
Identities = 56/229 (24%), Positives = 73/229 (31%), Gaps = 80/229 (34%)
Query: 25 RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCV 84
GEKPY C C +++ + H Q T E
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-----QRTHTGEKP--------- 49
Query: 85 HCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
Y C +C + F + + RH RTHTG KPY
Sbjct: 50 --Y-------------KCPECG---------KSFSD------KKDLTRHQRTHTGEKPYK 79
Query: 145 CTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLRT 204
C ECG + +LR H +R H E C C K SF
Sbjct: 80 CPECGKSFSQRANLRAH-QRTHT---GEKPYACPECGK-------SF------------- 115
Query: 205 VGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
Q AH+R H R HTG +P+ C C S +++ NL H
Sbjct: 116 ------------SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 70.9 bits (175), Expect = 7e-15
Identities = 51/223 (22%), Positives = 72/223 (32%), Gaps = 83/223 (37%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHN 186
S+ + G KPYAC ECG + S L +H +R H E C C K
Sbjct: 6 SSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTG---EKPYKCPECGK---- 57
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQ 246
SF + +H R HTG +P+ C C S +Q
Sbjct: 58 ---SF-------------------------SDKKDLTRHQRTHTGEKPYKCPECGKSFSQ 89
Query: 247 KWNLKMH--MH-----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCF 299
+ NL+ H H + C C + F
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGK----------------------------------SF 115
Query: 300 VCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
++ H R HTGEKPY+C C ++ ++H H
Sbjct: 116 ------SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 70.9 bits (175), Expect = 9e-15
Identities = 55/223 (24%), Positives = 77/223 (34%), Gaps = 83/223 (37%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHN 186
+ H RTHTG KPY C ECG + DL +H +R H E C C K
Sbjct: 34 SDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHT---GEKPYKCPECGK---- 85
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQ 246
SF Q A++R H R HTG +P+ C C S +Q
Sbjct: 86 ---SF-------------------------SQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Query: 247 KWNLKMH--MH-----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCF 299
+L+ H H + C C + F
Sbjct: 118 LAHLRAHQRTHTGEKPYKCPECG----------------------------------KSF 143
Query: 300 VCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+ ++ H R HTGEKPY+C C ++ +++ H
Sbjct: 144 ------SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 67.5 bits (166), Expect = 1e-13
Identities = 60/239 (25%), Positives = 79/239 (33%), Gaps = 80/239 (33%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
Y C C + +H R HTGEKPY+C C + + H Q T E
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-----QRTHTGEK 76
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
Y C +C + F R +N H
Sbjct: 77 P-----------Y-------------KCPECG---------KSFSQR------ANLRAHQ 97
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLK 194
RTHTG KPYAC ECG + LR H +R H E C C K SF
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAH-QRTHT---GEKPYKCPECGK-------SF--- 143
Query: 195 HCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+ ++ H R HTG +P+ C C S +++ L +H
Sbjct: 144 ----------------------SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 64.0 bits (157), Expect = 3e-12
Identities = 41/152 (26%), Positives = 53/152 (34%), Gaps = 45/152 (29%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
Y+C C + +++ H R HTGEKPY C C +Q + + H Q T E
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-----QRTHTGEK 132
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
Y C +C + F N H
Sbjct: 133 P-----------Y-------------KCPECG---------KSFSRE------DNLHTHQ 153
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
RTHTG KPY C ECG + L H +R H
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVH-QRTH 184
Score = 49.7 bits (120), Expect = 2e-07
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 29/138 (21%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDI 269
S+ G +P+ C C S ++ +L H H + C C + S
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD-K 62
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIM-----YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
DL H +R Y+C C + +++ H R HTGEKPY
Sbjct: 63 KDLTRH--------------QR--THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPY 106
Query: 325 ECNLCDYKATQNSSIHFH 342
C C +Q + + H
Sbjct: 107 ACPECGKSFSQLAHLRAH 124
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 68.9 bits (169), Expect = 2e-14
Identities = 37/215 (17%), Positives = 50/215 (23%), Gaps = 86/215 (40%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH------MPQFVEDVRHCVHCN 181
L C +L H+ + V C
Sbjct: 11 KQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHV-TMEHVGGPEQNNHVCYWEECPREG 69
Query: 182 KEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDM-- 239
K SF + + H+R HTG +PFPC
Sbjct: 70 K-------SF-------------------------KAKYKLVNHIRVHTGEKPFPCPFPG 97
Query: 240 CEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRN 292
C A+ NLK+H H F C C
Sbjct: 98 CGKIFARSENLKIHKRTHTGEKPFKCEF----------------EGCD------------ 129
Query: 293 VIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
R F + D KKH+ HT +K +
Sbjct: 130 ----RRF------ANSSDRKKHMHVHTSDKSGPSS 154
Score = 52.7 bits (127), Expect = 1e-08
Identities = 26/136 (19%), Positives = 37/136 (27%), Gaps = 38/136 (27%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSS 92
+ CD + + H+ + G H
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-----MEHVG-----GPEQNNHVCY---- 61
Query: 93 ATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT--ECGY 150
W +C R S K + + HIR HTG KP+ C CG
Sbjct: 62 ---------------------WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGK 100
Query: 151 ASILSTDLRKHIERIH 166
S +L+ H R H
Sbjct: 101 IFARSENLKIHK-RTH 115
Score = 41.1 bits (97), Expect = 1e-04
Identities = 24/124 (19%), Positives = 39/124 (31%), Gaps = 44/124 (35%)
Query: 25 RHKGDVKKHVRKHTGEKPYECNLCD-YKA-TQNSSIHFHMKVGVQAIFTSENVVLSGLHS 82
+ K + H+R HTGEKP+ C K ++ ++ H + T E
Sbjct: 73 KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-----THTGEK-----PFK 122
Query: 83 CVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKP 142
C C R R++N S+ +H+ HT K
Sbjct: 123 CEF-----------------EGCDR-------------RFANS--SDRKKHMHVHTSDKS 150
Query: 143 YACT 146
+
Sbjct: 151 GPSS 154
Score = 40.0 bits (94), Expect = 2e-04
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 26/122 (21%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMG 283
+ P C+ + + L H+ H + E +
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTM--EHVGGPEQNNHVCYWEECPREG--- 69
Query: 284 IAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCD-YKA-TQNSSIHF 341
+ F + K + H+R HTGEKP+ C K ++ ++
Sbjct: 70 -------------KSF------KAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKI 110
Query: 342 HM 343
H
Sbjct: 111 HK 112
Score = 38.0 bits (89), Expect = 0.001
Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 56/155 (36%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPF---------PCDMCEYSAAQKWNLKMHM--H 255
C + H+ P C S K+ L H+ H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 256 -----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGD 310
F C C + F +
Sbjct: 86 TGEKPFPCPFP----------------GCG----------------KIF------ARSEN 107
Query: 311 VKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 343
+K H R HTGEKP++C CD + +S HM
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
Score = 31.5 bits (72), Expect = 0.21
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+ CD + + H+ ++H
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 62.4 bits (153), Expect = 1e-12
Identities = 25/130 (19%), Positives = 40/130 (30%), Gaps = 45/130 (34%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATET 96
P++C +C ++ + HM+ H+ V Y
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC----------------HTGVKPY--------- 37
Query: 97 ELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILST 156
C C S+ +H+R H+ +P+ C C YAS S+
Sbjct: 38 ----KCKTCDY---------AAADS------SSLNKHLRIHSDERPFKCQICPYASRNSS 78
Query: 157 DLRKHIERIH 166
L H R H
Sbjct: 79 QLTVH-LRSH 87
Score = 54.0 bits (131), Expect = 1e-09
Identities = 32/123 (26%), Positives = 40/123 (32%), Gaps = 36/123 (29%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDV 174
+C C + H+R HTG KPY C C YA+ S+ L KH RIH E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSD---ERP 64
Query: 175 RHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRP 234
C C + R S+ + HLR HTG
Sbjct: 65 FKCQICPY-------AS-------------------------RNSSQLTVHLRSHTGDSG 92
Query: 235 FPC 237
Sbjct: 93 PSS 95
Score = 53.6 bits (130), Expect = 1e-09
Identities = 32/131 (24%), Positives = 45/131 (34%), Gaps = 44/131 (33%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
++C VC K +K H+R HTG KPY+C CDY A +SS++ H I + E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-----LRIHSDER 63
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
+ C C R S H+
Sbjct: 64 P-----------F-------------KCQICPY---------ASRN------SSQLTVHL 84
Query: 135 RTHTGHKPYAC 145
R+HTG +
Sbjct: 85 RSHTGDSGPSS 95
Score = 51.3 bits (124), Expect = 8e-09
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 36/119 (30%)
Query: 136 THTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKH 195
+ P+ C CG L+ H R H C C+ +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH-MRCHT---GVKPYKCKTCDY-------AA---- 46
Query: 196 CKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
S+ + +HLR H+ RPF C +C Y++ L +H+
Sbjct: 47 ---------------------ADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 47.8 bits (115), Expect = 1e-07
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
Y+C C Y + + KH+R H+ E+P++C +C Y + +S + H++
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 47.4 bits (114), Expect = 2e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++C VC K +K H+R HTG KPY+C CDY A +SS++ H++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 44.0 bits (105), Expect = 3e-06
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 47/117 (40%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDI 269
+ ++ H+R HTG +P+ C C+Y+AA +L H+ H F C C
Sbjct: 19 SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICP------- 71
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
R+ + H+R HTG+
Sbjct: 72 ---------------------------YAS------RNSSQLTVHLRSHTGDSGPSS 95
Score = 37.0 bits (87), Expect = 0.001
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMK 344
P++C +C ++ + HM+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR 29
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 59.8 bits (146), Expect = 7e-12
Identities = 23/122 (18%), Positives = 31/122 (25%), Gaps = 40/122 (32%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCY 87
G R HTGEKPY C+ CD Q + H K + + +
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK-----RYHDP-------NFVPAAF 48
Query: 88 GDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
C +C + F R+ RH G
Sbjct: 49 V-------------CSKCGK---------TFTR------RNTMARHADNCAGPDGVEGEN 80
Query: 148 CG 149
G
Sbjct: 81 SG 82
Score = 54.1 bits (131), Expect = 9e-10
Identities = 23/113 (20%), Positives = 31/113 (27%), Gaps = 34/113 (30%)
Query: 129 NFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM-PQFVEDVRHCVHCNKEMHNL 187
+ RTHTG KPYAC+ C L H + + P FV C C K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGK----- 55
Query: 188 DESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
+F + M +H G +
Sbjct: 56 --TF-------------------------TRRNTMARHADNCAGPDGVEGENS 81
Score = 47.1 bits (113), Expect = 2e-07
Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 29/109 (26%)
Query: 221 HMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCS 280
R HTG +P+ C C+ + QK L MH +H F
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPNFVPAA------------ 47
Query: 281 VMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 329
+ C C + + +H G E
Sbjct: 48 ---------------FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 42.9 bits (102), Expect = 7e-06
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
G R HTGEKPY C+ CD Q + H K
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFK 36
Score = 42.5 bits (101), Expect = 8e-06
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG----HKPYACTECGYASILSTDLRKHIERIH 166
+ C C + + + H + + + C++CG + +H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
Score = 39.0 bits (92), Expect = 2e-04
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 48
+ C C + + +H G E
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE----KPYECNLCDYKATQNSSIHFHMKV 64
Y C C R K + H +++ + C+ C T+ +++ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE----KPYECNLCDYKATQNSSIHFHMK 344
Y C C R K + H +++ + C+ C T+ +++ H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 31.7 bits (73), Expect = 0.057
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 217 RQSAHMRQHLRKHTG----RRPFPCDMCEYSAAQKWNLKMHM 254
RQ + H +++ F C C + ++ + H
Sbjct: 26 RQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
+C C Y K ++ H R H ++P++CN C + Q S++ HMK
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 58.3 bits (142), Expect = 1e-11
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+C C Y K ++ H R H ++P++CN C + Q S++ HMK
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 55.2 bits (134), Expect = 2e-10
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+C C Y A +R H R H RPF C+ C + Q NL HM
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 54.8 bits (133), Expect = 3e-10
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+C C YS ++ H R H +P+ C C + + ++L KH+ +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKF 60
Score = 49.4 bits (119), Expect = 2e-08
Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 42/106 (39%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIHM---PQFVEDVRHCVHCNKEMHNLDESF 191
+ + P C+EC Y+ LR H ERIH P
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRP----------------------- 37
Query: 192 LLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
F+C C + T+Q +++ +H++K G P
Sbjct: 38 ---------------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 48.3 bits (116), Expect = 6e-08
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 44/112 (39%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSAT 94
+ P +C+ C Y + +++ H + I ++
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHER-----IHCTDR-------------------- 36
Query: 95 ETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
P F+C C + K SN +H++ G +
Sbjct: 37 -----------------P--FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 47.9 bits (115), Expect = 8e-08
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 33/100 (33%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAY 286
+ P C C YS + K L++H HC R
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI---HC---TDRP------------------ 37
Query: 287 LNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
++C C + ++ ++ KH++K G+
Sbjct: 38 ---------FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 46.0 bits (110), Expect = 4e-07
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHM 343
+ P +C+ C Y + +++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 36.3 bits (85), Expect = 0.001
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
++C C + ++ ++ KH++K G+
Sbjct: 38 FKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 58.2 bits (142), Expect = 5e-11
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 45/136 (33%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLS 91
+K + C C T++ ++ H + T E Y
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIH-----ERTHTDERP-----------Y---- 46
Query: 92 SATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYA 151
C C + FR + + H H+ KP+ C ECG
Sbjct: 47 ---------TCDICHK---------AFRRQ------DHLRDHRYIHSKEKPFKCQECGKG 82
Query: 152 SILSTDLRKHIERIHM 167
S L H + +HM
Sbjct: 83 FCQSRTLAVH-KTLHM 97
Score = 53.6 bits (130), Expect = 2e-09
Identities = 28/127 (22%), Positives = 37/127 (29%), Gaps = 36/127 (28%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNL 187
S K + C CG S +L H ER H E C C+K
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIH-ERTHT---DERPYTCDICHK----- 53
Query: 188 DESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQK 247
+F R+ H+R H H+ +PF C C Q
Sbjct: 54 --AF-------------------------RRQDHLRDHRYIHSKEKPFKCQECGKGFCQS 86
Query: 248 WNLKMHM 254
L +H
Sbjct: 87 RTLAVHK 93
Score = 48.6 bits (117), Expect = 1e-07
Identities = 26/111 (23%), Positives = 28/111 (25%), Gaps = 36/111 (32%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHN 186
N L H RTHT +PY C C A LR H IH E C C K
Sbjct: 30 SYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHS---KEKPFKCQECGK---- 81
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
F QS + H H
Sbjct: 82 ---GF-------------------------CQSRTLAVHKTLHMQTSSPTA 104
Score = 42.8 bits (102), Expect = 1e-05
Identities = 21/133 (15%), Positives = 34/133 (25%), Gaps = 46/133 (34%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKA-TQNSSIHFHMKVGVQAIFTSE 73
+ C C ++ H R HT E+PY C++C KA + + H + I + E
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICH-KAFRRQDHLRDH-----RYIHSKE 71
Query: 74 NVVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRH 133
+ C +C + F H
Sbjct: 72 KP-----------F-------------KCQECGK---------GFCQ------SRTLAVH 92
Query: 134 IRTHTGHKPYACT 146
H
Sbjct: 93 KTLHMQTSSPTAA 105
Score = 40.5 bits (96), Expect = 6e-05
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 49/134 (36%)
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDIGD 271
S+ ++ F C C + +NL +H H + C C
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDIC---------- 51
Query: 272 LIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDY 331
A+ R + ++ H H+ EKP++C C
Sbjct: 52 -----------HKAF-------------------RRQDHLRDHRYIHSKEKPFKCQECG- 80
Query: 332 KA-TQNSSIHFHMK 344
K Q+ ++ H
Sbjct: 81 KGFCQSRTLAVHKT 94
Score = 39.3 bits (93), Expect = 2e-04
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 49/119 (41%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH--MH-----FLCHHCNR-FGSRD 268
+S ++ H R HT RP+ CD+C + ++ +L+ H +H F C C + F
Sbjct: 28 TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF---- 83
Query: 269 IGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Q L+ HK H
Sbjct: 84 --------CQSR----------------------TLAVHK-------TLHMQTSSPTAA 105
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 57.9 bits (141), Expect = 7e-11
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 49/146 (33%)
Query: 25 RHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHS 82
++ H RKHTGEKPY+C+ C+ + +++ + H + H+
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR----------------HT 62
Query: 83 CVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKP 142
V + C C R F + H RTHTG KP
Sbjct: 63 GVKPF-------------QCKTCQR---------KFSRS------DHLKTHTRTHTGEKP 94
Query: 143 YAC--TECGYASILSTDLRKHIERIH 166
++C C S +L +H +H
Sbjct: 95 FSCRWPSCQKKFARSDELVRH-HNMH 119
Score = 54.1 bits (131), Expect = 2e-09
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 51/139 (36%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAA--QKWNLKMHM--H-----FLCHHCNRFGSR 267
+ +H++ H RKHTG +P+ CD + + LK H H F C C R
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQR---- 74
Query: 268 DIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
F +K H R HTGEKP+ C
Sbjct: 75 ------------------------------KF------SRSDHLKTHTRTHTGEKPFSCR 98
Query: 328 L--CDYKATQNSSIHFHMK 344
C K ++ + H
Sbjct: 99 WPSCQKKFARSDELVRHHN 117
Score = 52.1 bits (126), Expect = 7e-09
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 40/132 (30%)
Query: 127 RSNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEM 184
S+ H R HTG KPY C +C S L++H +R H C C +
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTG---VKPFQCKTCQR-- 74
Query: 185 HNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDM--CEY 242
F +S H++ H R HTG +PF C C+
Sbjct: 75 -----KF-------------------------SRSDHLKTHTRTHTGEKPFSCRWPSCQK 104
Query: 243 SAAQKWNLKMHM 254
A+ L H
Sbjct: 105 KFARSDELVRHH 116
Score = 47.9 bits (115), Expect = 2e-07
Identities = 26/131 (19%), Positives = 38/131 (29%), Gaps = 45/131 (34%)
Query: 38 TGEKPYECN--LCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATE 95
+ ++P+ C C+ + + S + H + T E + C
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR-----KHTGEK-----PYQC------------ 39
Query: 96 TELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILS 155
C R F RH R HTG KP+ C C S
Sbjct: 40 -----DFKDCER---------RFSRS------DQLKRHQRRHTGVKPFQCKTCQRKFSRS 79
Query: 156 TDLRKHIERIH 166
L+ H R H
Sbjct: 80 DHLKTHT-RTH 89
Score = 43.3 bits (103), Expect = 1e-05
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
++C C +K H R HTGEKP+ C C K ++ + H +
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 27.5 bits (62), Expect = 2.9
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 319 TGEKPYECN--LCDYKATQNSSIHFHM 343
+ ++P+ C C+ + + S + H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHS 28
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 56.3 bits (137), Expect = 1e-10
Identities = 23/132 (17%), Positives = 35/132 (26%), Gaps = 46/132 (34%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATET 96
+G C +C ++ H + E
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-----SHSGEK---------------------- 34
Query: 97 ELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTG--HKPYACTECGYASIL 154
P + C C K + H+R+H G KPY C CG
Sbjct: 35 ---------------P--YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSR 77
Query: 155 STDLRKHIERIH 166
L HI+++H
Sbjct: 78 PDHLNGHIKQVH 89
Score = 44.4 bits (106), Expect = 2e-06
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 38/121 (31%)
Query: 137 HTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHC 196
+G AC CG L +H + H E C C F
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH-KLSHSG---EKPYSCPVCGL-------RF----- 45
Query: 197 KYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTG--RRPFPCDMCEYSAAQKWNLKMHM 254
++ M H+R H G +P+ C C ++ +L H+
Sbjct: 46 --------------------KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 255 H 255
Sbjct: 86 K 86
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
C +C + R + +H H+GEKPY C +C + + + +H++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 41.3 bits (98), Expect = 3e-05
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
C +C + R + +H H+GEKPY C +C + + + +H++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Score = 38.2 bits (90), Expect = 3e-04
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMKLKH 347
Y C VC + K + HVR H G KPY C C ++ ++ H+K H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.5 bits (88), Expect = 7e-04
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMK 63
Y C VC + K + HVR H G KPY C C ++ ++ H+K
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 34.8 bits (81), Expect = 0.007
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMK 344
+G C +C ++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL 28
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 53.3 bits (129), Expect = 4e-09
Identities = 32/144 (22%), Positives = 49/144 (34%), Gaps = 46/144 (31%)
Query: 25 RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCV 84
R ++KH+ H G + + C C ++S + H V H+
Sbjct: 18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV----------------HTGE 60
Query: 85 HCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
+ QC+ + C G + F N H+R HTG +PY
Sbjct: 61 KPF----------------QCTFEGC--G--KRFSLD------FNLRTHVRIHTGDRPYV 94
Query: 145 C--TECGYASILSTDLRKHIERIH 166
C C ST+L+ HI H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHI-LTH 117
Score = 50.2 bits (121), Expect = 4e-08
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 47/135 (34%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHN 186
S +H+ TH G + + C ECG A + S+ L++H + +H
Sbjct: 20 NSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVH-------------------- 57
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYIT-----RQSAHMRQHLRKHTGRRPFPCDM-- 239
G + + C + ++R H+R HTG RP+ C
Sbjct: 58 ------------------TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Query: 240 CEYSAAQKWNLKMHM 254
C AQ NLK H+
Sbjct: 100 CNKKFAQSTNLKSHI 114
Score = 45.6 bits (109), Expect = 2e-06
Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 48/137 (35%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDI 269
R ++ MR+HL H G R C C + + LK H H F C
Sbjct: 18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF--------- 67
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNL- 328
C + F +++ HVR HTG++PY C
Sbjct: 68 -------EGCG----------------KRF------SLDFNLRTHVRIHTGDRPYVCPFD 98
Query: 329 -CDYKATQNSSIHFHMK 344
C+ K Q++++ H+
Sbjct: 99 GCNKKFAQSTNLKSHIL 115
Score = 44.0 bits (105), Expect = 5e-06
Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 86/196 (43%)
Query: 141 KPYACT--ECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKY 198
+ AC C ++ +RKH H V C C K +F
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH-LHTHG----PRVHVCAECGK-------AF------- 44
Query: 199 CPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHM-- 254
+S+ +++H HTG +PF C C + +NL+ H+
Sbjct: 45 ------------------VESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Query: 255 H-----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKG 309
H ++C C+ + F
Sbjct: 87 HTGDRPYVCPF----------------DGCN----------------KKF------AQST 108
Query: 310 DVKKHVRKHTGEKPYE 325
++K H+ H K +
Sbjct: 109 NLKSHILTHAKAKNNQ 124
Score = 40.6 bits (96), Expect = 9e-05
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 44/131 (33%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKVGVQAIFTS 72
+ C C +K+H HTGEKP++C C + + + ++ H++ I T
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR-----IHTG 89
Query: 73 ENVVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLR 132
+ + C C++ F +N
Sbjct: 90 DR-----PYVCPF-----------------DGCNK---------KFAQ------STNLKS 112
Query: 133 HIRTHTGHKPY 143
HI TH K
Sbjct: 113 HILTHAKAKNN 123
Score = 30.6 bits (70), Expect = 0.25
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 25 RHKGDVKKHVRKHTGEKPYE 44
++K H+ H K +
Sbjct: 105 AQSTNLKSHILTHAKAKNNQ 124
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 54.1 bits (131), Expect = 4e-09
Identities = 30/162 (18%), Positives = 43/162 (26%), Gaps = 52/162 (32%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRK---HTGEKPYECNLCDYKA-----TQNSSIHFHMKVGV 66
R C + + H+ H K + C+ + HM+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR--- 60
Query: 67 QAIFTSENVVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKF 126
T E H C C + +
Sbjct: 61 --RHTGEK-----PHKC-----------------TFEGCRK---------SYSRL----- 82
Query: 127 RSNFLRHIRTHTGHKPYACTE--CGYASILSTDLRKHIERIH 166
N H+R+HTG KPY C C A ++D KH R H
Sbjct: 83 -ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 52.2 bits (126), Expect = 2e-08
Identities = 45/216 (20%), Positives = 65/216 (30%), Gaps = 78/216 (36%)
Query: 141 KPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCP 200
C L HI H +H ++ C +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH-----------IHGERKEF---------VCHWG- 40
Query: 201 SLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHM--H- 255
C L + + H+R+HTG +P C C S ++ NLK H+ H
Sbjct: 41 -------GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 256 ----FLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDV 311
++C H CS + F + D
Sbjct: 94 GEKPYMCEH----------------EGCS----------------KAF------SNASDR 115
Query: 312 KKH-VRKHTGEKPYECNL--CDYKATQNSSIHFHMK 344
KH R H+ EKPY C L C + T SS+ H+K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 43.7 bits (104), Expect = 1e-05
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 39/129 (30%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATETELL 99
E + C + + H+ + I C
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHIN--SEHIHGER-----KEFVCHWG------------- 40
Query: 100 DHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT--ECGYASILSTD 157
C + R F+ +Y + H+R HTG KP+ CT C + +
Sbjct: 41 -GCSRELR---------PFKAQY------MLVVHMRRHTGEKPHKCTFEGCRKSYSRLEN 84
Query: 158 LRKHIERIH 166
L+ H+ R H
Sbjct: 85 LKTHL-RSH 92
Score = 39.9 bits (94), Expect = 3e-04
Identities = 27/147 (18%), Positives = 39/147 (26%), Gaps = 55/147 (37%)
Query: 218 QSAHMRQHLRK---HTGRRPFPCDMCEYSAA-----QKWNLKMHM--H-----FLCHHCN 262
+ H+ H R+ F C S ++ L +HM H C
Sbjct: 15 SQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE- 73
Query: 263 RFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEK 322
C + + ++K H+R HTGEK
Sbjct: 74 ---------------GCR----------------KSY------SRLENLKTHLRSHTGEK 96
Query: 323 PYECN--LCDYKATQNSSIHFHMKLKH 347
PY C C + S H H
Sbjct: 97 PYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 37.6 bits (88), Expect = 0.002
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 128 SNFLRHI-RTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
S+ +H RTH+ KPY C C + LRKH+ +
Sbjct: 113 SDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV-KTV 153
Score = 37.2 bits (87), Expect = 0.002
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 26 HKGDVKKH-VRKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
+ D KH R H+ EKPY C L C + T SS+ H+K
Sbjct: 111 NASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 54.5 bits (132), Expect = 5e-09
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 45/146 (30%)
Query: 25 RHKGDVKKHVRKHTGEKPYECN--LCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHS 82
+ +H HTGEK + C+ CD + T +++ H F + ++
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN-----RFHNIK---ICVYV 106
Query: 83 CVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKP 142
C H C + F+ + H +HT P
Sbjct: 107 C-----------------HFENCGK---------AFKKH------NQLKVHQFSHTQQLP 134
Query: 143 YACTE--CGYASILSTDLRKHIERIH 166
Y C C L + L++H E++H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRH-EKVH 159
Score = 46.0 bits (110), Expect = 3e-06
Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 48/147 (32%)
Query: 25 RHKGDVKKHVRKHTGEK--PYECNL--CDYKA-TQNSSIHFHMKVGVQAIFTSENVVLSG 79
K ++KKH + K Y C+ C KA +++ + H Q T +
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCG-KAFKKHNQLKVH-----QFSHTQQL----- 133
Query: 80 LHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTG 139
+ C H C + F S RH + H G
Sbjct: 134 PYECPHE-----------------GCDK---------RFSLP------SRLKRHEKVHAG 161
Query: 140 HKPYACTECGYASILSTDLRKHIERIH 166
+ C + T KH+ H
Sbjct: 162 YPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 45.7 bits (109), Expect = 5e-06
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 44/136 (32%)
Query: 127 RSNFLRHIRTHTGHKPYACTE--CGYASILSTDLRKHIERIH----MPQFVEDVRHCVHC 180
+ RH THTG K + C C +++KH + +V +C
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFENC--- 112
Query: 181 NKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPC--D 238
++F ++ ++ H HT + P+ C +
Sbjct: 113 -------GKAF-------------------------KKHNQLKVHQFSHTQQLPYECPHE 140
Query: 239 MCEYSAAQKWNLKMHM 254
C+ + LK H
Sbjct: 141 GCDKRFSLPSRLKRHE 156
Score = 41.0 bits (97), Expect = 2e-04
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 49/135 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAA--QKWNLKMHM--H-----FLCHHCNRFGSRDIGDLIE 274
+ + C + AA + W L+ H+ H F C
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG------------ 49
Query: 275 HSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN--LCDYK 332
C + F + +H HTGEK + C+ CD +
Sbjct: 50 ----CE----------------KGF------TSLHHLTRHSLTHTGEKNFTCDSDGCDLR 83
Query: 333 ATQNSSIHFHMKLKH 347
T +++ H H
Sbjct: 84 FTTKANMKKHFNRFH 98
Score = 40.3 bits (95), Expect = 3e-04
Identities = 31/135 (22%), Positives = 43/135 (31%), Gaps = 39/135 (28%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD--MCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIE 274
H+ +H HTG + F CD C+ K N+K H + H +
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR--FHNIKICV-------- 104
Query: 275 HSTQCSVMGIAYLNDRRNVIMYRCFV--CPYLSRHKGDVKKHVRKHTGEKPYECN--LCD 330
Y C C + +K H HT + PYEC CD
Sbjct: 105 ---------------------YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCD 143
Query: 331 YKA-TQNSSIHFHMK 344
K + S + H K
Sbjct: 144 -KRFSLPSRLKRHEK 157
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 25 RHKGDVKKHVRKHTGEKPYECN--LCDYKA-TQNSSIHFHMKV 64
++ H+ KHTGEKP+ C C+ K T + H
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCE-KGFTSLHHLTRHSLT 66
Score = 37.2 bits (87), Expect = 0.004
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 133 HIRTHTGHKPYAC--TECGYASILSTDLRKHIERIH 166
+K Y C +CG A + L+ H H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKH 37
Score = 35.6 bits (83), Expect = 0.010
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 32 KHVRKHTGEKPYECNL--CDYKATQNSSIHFHMKV 64
K Y C+ C +N + H+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK 36
Score = 33.3 bits (77), Expect = 0.059
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD--MCEYSAAQKWNLKMHM 254
++ ++ HL KHTG +PFPC CE +L H
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS 64
Score = 31.8 bits (73), Expect = 0.23
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 306 RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
+K+H + H G + + C + + H+ H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 49.0 bits (118), Expect = 2e-08
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
F C C + + + RH R+HT KPY C C A L +H ++IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.8 bits (94), Expect = 4e-05
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+ C VC + +K+H R HT EKPY C LC+ T+ + H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 39.8 bits (94), Expect = 5e-05
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
+ C VC + +K+H R HT EKPY C LC+ T+ + H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 34.8 bits (81), Expect = 0.003
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH 255
+ H+++H R HT +P+PC +C + ++ L H
Sbjct: 13 ARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 28.6 bits (65), Expect = 0.47
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
+ + C C A L++H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 49.8 bits (120), Expect = 3e-08
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
FQC C + + HIRTHTG KP+AC CG S + ++H +IH
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT-KIH 85
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ RHIR HTG KP+ C C S L HI R H
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTH 57
Score = 45.5 bits (109), Expect = 8e-07
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++C +C + H+R HTGEKP+ C++C K ++ H K+
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 45.5 bits (109), Expect = 8e-07
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++C +C + H+R HTGEKP+ C++C K ++ H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 42.8 bits (102), Expect = 8e-06
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 26 HKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
G + +H+R HTG+KP++C +C +++ + H++
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 42.5 bits (101), Expect = 9e-06
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 307 HKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
G + +H+R HTG+KP++C +C +++ + H++
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 40.5 bits (96), Expect = 5e-05
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 38/116 (32%)
Query: 141 KPYAC--TECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKY 198
+PYAC C S L +HI RIH + C C + +F
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTG---QKPFQCRICMR-------NF------- 44
Query: 199 CPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+S H+ H+R HTG +PF CD+C A+ K H
Sbjct: 45 ------------------SRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 39.0 bits (92), Expect = 2e-04
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDIG 270
QS + +H+R HTG++PF C +C + ++ +L H+ H F C C R +R
Sbjct: 18 QSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR-SD 76
Query: 271 DLIEH 275
+ H
Sbjct: 77 ERKRH 81
Score = 25.5 bits (57), Expect = 9.9
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
+ C +C + K+H + H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKIHLRQK 89
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.3 bits (118), Expect = 3e-08
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHT---GEKPYECNLCDYKATQNSSIHFHMKLKH 347
+C +C + R K + H RKH + C C + + S+ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 48.9 bits (117), Expect = 4e-08
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHT---GRRPFPCDMCEYSAAQKWNLKMHMHFLCHH 260
QC +C + RQ A + H RKH FPC+ C + ++ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK--SH 62
Score = 47.4 bits (113), Expect = 2e-07
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHT---GEKPYECNLCDYKATQNSSIHFHMKV 64
+C +C + R K + H RKH + C C + + S+ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 45.5 bits (108), Expect = 8e-07
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHT---GHKPYACTECGYASILSTDLRKHIERIH 166
QC C ++ + +++ H R H + C CG + H + H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 42.4 bits (100), Expect = 1e-05
Identities = 16/105 (15%), Positives = 21/105 (20%), Gaps = 34/105 (32%)
Query: 137 HTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHC 196
+G C CG+ L H R H C C K F
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGK-------RF----- 48
Query: 197 KYCPSLRTVGFQCYLCLYITRQSAHMRQHLRK-HTGRRPFPCDMC 240
+ + H K H P +
Sbjct: 49 --------------------EKPDSVAAHRSKSHPALLLAPQESS 73
Score = 38.9 bits (91), Expect = 2e-04
Identities = 13/99 (13%), Positives = 21/99 (21%), Gaps = 30/99 (30%)
Query: 229 HTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLN 288
+G C++C ++ QK +L H H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK---HAETVAALR-------------------- 38
Query: 289 DRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C V H K
Sbjct: 39 -------FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 37.8 bits (88), Expect = 3e-04
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKV 64
+G +C +C + Q +S+++H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 37.4 bits (87), Expect = 5e-04
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMK 344
+G +C +C + Q +S+++H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQR 28
Score = 27.4 bits (61), Expect = 1.8
Identities = 5/32 (15%), Positives = 6/32 (18%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C V H K
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 49.0 bits (118), Expect = 5e-08
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
FQC C + + HIRTHTG KP+AC CG S + ++H I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQ 54
Score = 45.6 bits (109), Expect = 9e-07
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 42/127 (33%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSEN 74
++C +C + H+R HTGEKP+ C++C K ++ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD----------- 52
Query: 75 VVLSGLHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHI 134
+ L + Y + N + +
Sbjct: 53 -------------------IQHILPILEDKVEE---------LLSKNYHLE---NEVARL 81
Query: 135 RTHTGHK 141
+ G +
Sbjct: 82 KKLVGER 88
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++C +C + H+R HTGEKP+ C++C K ++ H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD 52
Score = 40.9 bits (97), Expect = 3e-05
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 43/111 (38%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H----FLCHHCNRFGSRDIGD 271
+S H+ H+R HTG +PF CD+C A+ K H L S+
Sbjct: 15 RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSK---- 70
Query: 272 LIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEK 322
+ H + ++K GE+
Sbjct: 71 ---------------------------------NYHLENEVARLKKLVGER 88
Score = 39.4 bits (93), Expect = 1e-04
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 3/54 (5%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIE--RIH 166
F C C RH P + + L + +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 36.7 bits (86), Expect = 0.001
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+ C +C + K+H P + + ++N + +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVA 79
Score = 35.5 bits (83), Expect = 0.003
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 43/117 (36%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH---MPQFVEDVRHCVHCNKEMHNLDESFLLKHCK 197
KP+ C C S L HI R H P C C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI-RTHTGEKPF------ACDICGR-------KF------ 41
Query: 198 YCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+S ++H P D E ++ ++L+ +
Sbjct: 42 -------------------ARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEV 78
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 49.4 bits (119), Expect = 6e-08
Identities = 24/125 (19%), Positives = 34/125 (27%), Gaps = 46/125 (36%)
Query: 25 RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCV 84
HK +H+ H G +PY C +C K + HMK I T
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-----IHTGIKP--------- 65
Query: 85 HCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
Y C C++ F R +F H + K Y
Sbjct: 66 --Y-------------ECNICAK---------RFMW------RDSF--HRHVTSCTKSYE 93
Query: 145 CTECG 149
+
Sbjct: 94 AAKAE 98
Score = 49.0 bits (118), Expect = 8e-08
Identities = 23/128 (17%), Positives = 35/128 (27%), Gaps = 45/128 (35%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLSSAT 94
+G+K Y C C T S HM +
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS-----MHLGLR-------------------- 36
Query: 95 ETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASIL 154
P + C C K + + + H++ HTG KPY C C +
Sbjct: 37 -----------------P--YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77
Query: 155 STDLRKHI 162
+H+
Sbjct: 78 RDSFHRHV 85
Score = 48.6 bits (117), Expect = 1e-07
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+S RH+ H G +PY C CG + L H +IH
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 60
Score = 45.9 bits (110), Expect = 9e-07
Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 42/132 (31%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLK 194
+G K Y C +CG + + +H +H+ C C K F
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRH-MSMHL---GLRPYGCGVCGK-------KF--- 47
Query: 195 HCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+ H+ H++ HTG +P+ C++C + + H+
Sbjct: 48 ----------------------KMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Query: 255 H-----FLCHHC 261
+
Sbjct: 86 TSCTKSYEAAKA 97
Score = 42.0 bits (100), Expect = 3e-05
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 62
Y C VC + K + H++ HTG KPYECN+C + S H H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 42.0 bits (100), Expect = 3e-05
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHM 343
Y C VC + K + H++ HTG KPYECN+C + S H H+
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 41.7 bits (99), Expect = 3e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 306 RHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
HK +H+ H G +PY C +C K + HMK
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Score = 39.7 bits (94), Expect = 1e-04
Identities = 22/129 (17%), Positives = 36/129 (27%), Gaps = 49/129 (37%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDI 269
+ +H+ H G RP+ C +C K +L HM H + C+ C
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA------- 72
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 329
+ F + +HV + K YE
Sbjct: 73 ---------------------------KRF------MWRDSFHRHV--TSCTKSYEAAKA 97
Query: 330 DYKATQNSS 338
+ T+ S
Sbjct: 98 EQNTTEASG 106
Score = 36.7 bits (86), Expect = 0.002
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSS 57
H + K YE + T+ S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASG 106
Score = 31.6 bits (73), Expect = 0.090
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+G+K Y C C T S HM
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMS 30
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 48.3 bits (116), Expect = 7e-08
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 32/105 (30%)
Query: 221 HMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCS 280
R H+G +P+ C +C Q +KMH+ L H + +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI--LQKH---------TENVAK----- 45
Query: 281 VMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRK-HTGEKPY 324
+ C C + K D+ H+RK H+ P
Sbjct: 46 ---------------FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 47.9 bits (115), Expect = 1e-07
Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 43/118 (36%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCY 87
G R H+GEKPYEC +C + TQ+ ++ H+
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ----------------KH----- 39
Query: 88 GDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRT-HTGHKPYA 144
TE HC C +S+ H+R H+ P +
Sbjct: 40 ------TENVAKFHCPHCDT---------VIAR------KSDLGVHLRKQHSYSGPSS 76
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
G R H+GEKPYEC +C + TQ+ ++ H+ KH
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 47.1 bits (113), Expect = 2e-07
Identities = 24/110 (21%), Positives = 34/110 (30%), Gaps = 39/110 (35%)
Query: 129 NFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVR--HCVHCNKEMHN 186
+ RTH+G KPY C C S ++ HI E+V HC HC+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI-LQKH---TENVAKFHCPHCDT---- 53
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRK-HTGRRPF 235
+ + + HLRK H+ P
Sbjct: 54 ---VI-------------------------ARKSDLGVHLRKQHSYSGPS 75
Score = 46.0 bits (110), Expect = 5e-07
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG--HKPYACTECGYASILSTDLRKHIERIH 166
++C+ C HI + C C +DL H+ + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 45.6 bits (109), Expect = 6e-07
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMKLKH 347
Y C++C G +K H+ + E + C CD + S + H++ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 43.3 bits (103), Expect = 4e-06
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE--KPYECNLCDYKATQNSSIHFHMK 63
Y C++C G +K H+ + E + C CD + S + H++
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 33.6 bits (78), Expect = 0.010
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPY 43
+ C C + K D+ H+RK H+ P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 48.2 bits (116), Expect = 8e-08
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
F C C S K S H+ H+ +PY C CG +D++KH IH
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIH 52
Score = 46.6 bits (112), Expect = 2e-07
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+S+ +H HTG KP+ C CG A S++L H R H
Sbjct: 42 KSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKH 80
Score = 40.9 bits (97), Expect = 3e-05
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y C C K D+KKH HTGEKP++C +C +Q+S++ H +
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 40.5 bits (96), Expect = 4e-05
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
Y C C K D+KKH HTGEKP++C +C +Q+S++ H +
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 32 KHVRKHTGEKPYECNLCDYKA-TQNSSIHFHMKV 64
H+ H+ +PY C C K Q S + H +
Sbjct: 19 THLLIHSDTRPYPCQYCG-KRFHQKSDMKKHTFI 51
Score = 36.2 bits (85), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 313 KHVRKHTGEKPYECNLCDYKA-TQNSSIHFHMK 344
H+ H+ +PY C C K Q S + H
Sbjct: 19 THLLIHSDTRPYPCQYCG-KRFHQKSDMKKHTF 50
Score = 33.5 bits (78), Expect = 0.014
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
++S+ + HL H+ RP+PC C QK ++K H
Sbjct: 12 KRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 47.8 bits (115), Expect = 1e-07
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
++C C S S+ +H RTHTG KPY C ECG A I + L H R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVH 69
Score = 47.8 bits (115), Expect = 1e-07
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ R + Y C ECG + S+DL KH R H
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTH 41
Score = 41.7 bits (99), Expect = 2e-05
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 44/118 (37%)
Query: 26 HKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVH 85
G + + + Y+C+ C + +S + H + T E
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH-----RRTHTGEKP---------- 46
Query: 86 CYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPY 143
Y C +C + F RS+ + H R HTG P
Sbjct: 47 -Y-------------KCDECGK---------AFIQ------RSHLIGHHRVHTGSGPS 75
Score = 40.1 bits (95), Expect = 5e-05
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKA-TQNSSIHFH 61
Y+C C H D+ KH R HTGEKPY+C+ C KA Q S + H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGH 65
Score = 40.1 bits (95), Expect = 5e-05
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKA-TQNSSIHFH 342
Y+C C H D+ KH R HTGEKPY+C+ C KA Q S + H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECG-KAFIQRSHLIGH 65
Score = 39.3 bits (93), Expect = 1e-04
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 307 HKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
G + + + Y+C+ C + +S + H
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
Score = 34.3 bits (80), Expect = 0.006
Identities = 22/116 (18%), Positives = 30/116 (25%), Gaps = 49/116 (42%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH--MH-----FLCHHCNR-FGSRDI 269
S + + RR + CD C S + +L H H + C C + F
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF----- 56
Query: 270 GDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYE 325
Q S +L H R HTG P
Sbjct: 57 -------IQRS----------------------HLIGHH-------RVHTGSGPSS 76
Score = 30.9 bits (71), Expect = 0.11
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
S+ + +H R HTG +P+ CD C + Q+ +L H
Sbjct: 29 SHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 28.2 bits (64), Expect = 0.88
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 32 KHVRKHTGEKPYE 44
H R HTG P
Sbjct: 64 GHHRVHTGSGPSS 76
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 47.1 bits (113), Expect = 2e-07
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
++C RC+ S +++ N H HTG KPY C CG +L+ H RIH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIH 68
Score = 45.1 bits (108), Expect = 8e-07
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ H KPY C C + +L H + +H
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVH 40
Score = 43.2 bits (103), Expect = 3e-06
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y+C C R+KG++ H HTGEKPY CN+C + + +++ H ++
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 43.2 bits (103), Expect = 4e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
Y+C C R+KG++ H HTGEKPY CN+C + + +++ H +
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 40.9 bits (97), Expect = 3e-05
Identities = 21/112 (18%), Positives = 30/112 (26%), Gaps = 44/112 (39%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLS 91
H +KPY+C+ C ++ H + + T E Y
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASH-----KTVHTGEKP-----------Y---- 46
Query: 92 SATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPY 143
C C F +N H R H+G KPY
Sbjct: 47 ---------RCNICGA---------QFNR------PANLKTHTRIHSGEKPY 74
Score = 39.0 bits (92), Expect = 1e-04
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
H +KPY+C+ C ++ H
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKT 38
Score = 34.0 bits (79), Expect = 0.008
Identities = 24/113 (21%), Positives = 32/113 (28%), Gaps = 47/113 (41%)
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM--H-----FLCHHCNRFGSRDIGD 271
H H +P+ CD C+ S K NL H H + C+ C
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICG--------- 52
Query: 272 LIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
F ++K H R H+GEKPY
Sbjct: 53 -------------------------AQF------NRPANLKTHTRIHSGEKPY 74
Score = 32.8 bits (76), Expect = 0.017
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R ++ H HTG +P+ C++C + NLK H
Sbjct: 28 RYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 30.1 bits (69), Expect = 0.16
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
YRC +C ++K H R H+GEKPY
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
Y C C + +KKH+R HT +PY C C++ ++ HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 46.2 bits (109), Expect = 2e-07
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
Y C C + +KKH+R HT +PY C C++ ++ HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 43.6 bits (102), Expect = 2e-06
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
+ C C K S +HIRTHT +PY CT C ++ +L KH+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 42.0 bits (98), Expect = 8e-06
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+ C C ++ + +++H+R HT RP+ C C +S K NL HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 29.3 bits (65), Expect = 0.25
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y C C + + KG++ KH++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 29.3 bits (65), Expect = 0.25
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y C C + + KG++ KH++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 26.2 bits (57), Expect = 3.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
+ C C +S K + N +H+++ K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 46.7 bits (112), Expect = 2e-07
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ C C + S ++H R HTG KPY C ECG A ++ L H +RIH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIH 65
Score = 45.9 bits (110), Expect = 4e-07
Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 36/104 (34%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESF 191
H+G KPY C ECG A S+ L +H +R+H E C+ C K +F
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTG---EKPYKCLECGK-------AF 52
Query: 192 LLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPF 235
Q++ + H R HT
Sbjct: 53 -------------------------SQNSGLINHQRIHTSGPSS 71
Score = 41.3 bits (98), Expect = 2e-05
Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 44/113 (38%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGDLS 91
H+GEKPY C C +++S + H Q + T E Y
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH-----QRVHTGEK-----------PY---- 43
Query: 92 SATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
C++C + F S + H R HT
Sbjct: 44 ---------KCLECGK---------AFSQ------NSGLINHQRIHTSGPSSG 72
Score = 39.0 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
Y C C + +H R HTGEKPY+C C +QNS + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 39.0 bits (92), Expect = 1e-04
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
Y C C + +H R HTGEKPY+C C +QNS + H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 36.7 bits (86), Expect = 8e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
H+GEKPY C C +++S + H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
Score = 32.1 bits (74), Expect = 0.037
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+S+ + QH R HTG +P+ C C + +Q L H
Sbjct: 25 SRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 27.8 bits (63), Expect = 1.1
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
Y+C C + H R HT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 27.8 bits (63), Expect = 1.1
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
Y+C C + H R HT
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
H+G +P+ C C + ++ L H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 45.6 bits (109), Expect = 3e-07
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG + ++ L KH +R+H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY C C S + H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY C C S + H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C R + KH R H+GEKP +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C R + KH R H+GEKP +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
+ C C S ++ S L+H R H+G KP +
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 28.3 bits (64), Expect = 0.36
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R ++ + +H R H+G +P
Sbjct: 23 RWASCLLKHQRVHSGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C S L H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C ECG A I + L H ER H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVH-ERTH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKPYECN C S + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPYECN C S + H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 31.7 bits (73), Expect = 0.024
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
++C C + ++S + H RTH G +
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.098
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C K + H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 29.8 bits (68), Expect = 0.098
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C K + H R H G
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 26.0 bits (58), Expect = 2.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ C+ C + K L +H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 25.2 bits (56), Expect = 4.5
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H R H G
Sbjct: 23 IWKSLLIVHERTHAGVSGPSS 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.3 bits (108), Expect = 4e-07
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C ECG S L KH R H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSH 35
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKP++C C + + S+ H++
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 36.4 bits (85), Expect = 6e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
TGEKP++C C + + S+ H++
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLR 33
Score = 34.9 bits (81), Expect = 0.002
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
FQC C + + + +H+R+H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 31.8 bits (73), Expect = 0.022
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
++C C + KH+R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 31.8 bits (73), Expect = 0.022
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
++C C + KH+R H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 27.2 bits (61), Expect = 0.95
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
TG +PF C C + + +L H+
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD 238
S + +HLR H P
Sbjct: 23 SWSCSLFKHLRSHERTDPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 4e-07
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A I + L++H +RIH
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY C C +S + H Q I T E
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH-----QRIHTGE 38
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY C C +S + H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C H +++H R HTGEKP +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C H +++H R HTGEKP +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C + S H R HTG KP +
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ +++H R HTG +P
Sbjct: 23 IHDSQLQEHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 4.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + L+ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 45.6 bits (109), Expect = 5e-07
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 296 YRCFVCPYLSRHKGDVKKHVR--KHTGEKPYECNLCDYKATQNSSIHFHMKLKHNM 349
YRC VC + H + +H K Y C C + T+ ++ H+K+ H +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVR--KHTGEKPYECNLCDYKATQNSSIHFHMKV 64
YRC VC + H + +H K Y C C + T+ ++ H+K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRT--HTGHKPYACTECGYASILSTDLRKHIERIH 166
++C C SNF RH T K Y C C ++ H+ +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV-KII 63
Score = 36.8 bits (86), Expect = 7e-04
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 207 FQCYLCLYITRQSAHMRQHLR--KHTGRRPFPCDMCEYSAAQKWNLKMHM 254
++C +C + ++ +H + +PC C +K N+ H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 35.6 bits (83), Expect = 0.001
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHI 162
T G Y C C ++ +H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 33.7 bits (78), Expect = 0.009
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
GE Y C +C T S+ H H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
Score = 32.9 bits (76), Expect = 0.017
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHM 62
GE Y C +C T S+ H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 29.8 bits (68), Expect = 0.19
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 9/46 (19%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHMH---------FLCHHCNR 263
G + C +C N H + C C +
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFK 48
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C ECG + +S+ L H +RIH
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-QRIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKP+EC C + +S + H Q I T E
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH-----QRIHTGE 38
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP+EC C + +S + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 32.9 bits (76), Expect = 0.009
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C S S H R HTG KP +
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
+ C C + H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
+ C C + H R HTGEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.99
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
S+ + H R HTG +P
Sbjct: 23 SISSQLATHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 2.5
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF C C S + L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 6e-07
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG +PY CT CG A ++L KH ++IH
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH-QKIH 35
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGE+PY C +C T S++ H K+
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 39.0 bits (92), Expect = 6e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE+PY C +C T S++ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C VC + ++ KH + HTGEKP +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C VC + ++ KH + HTGEKP +
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 32.8 bits (76), Expect = 0.009
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
+ C C + RSN ++H + HTG KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.47
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG RP+ C +C + + NL H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 25.1 bits (56), Expect = 5.2
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ +H + HTG +P
Sbjct: 23 TDRSNLIKHQKIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 6e-07
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A + L H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH-TRTH 35
Score = 38.6 bits (91), Expect = 8e-05
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG KPY CN C S + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 38.6 bits (91), Expect = 8e-05
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG KPY CN C S + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C R K + H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C R K + H R HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 32.8 bits (76), Expect = 0.010
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
+ C C + + +S + H RTHTG +
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.4 bits (62), Expect = 0.82
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R +++ H R HTG
Sbjct: 23 RSKSYLIIHTRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 2.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + K L +H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 7e-07
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C CG A LS +L +H +RIH
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
+GEKPY C+ C ++ + H Q I T E
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-----QRIHTGE 38
Score = 37.9 bits (89), Expect = 1e-04
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPY C+ C ++ + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C ++ +H R HTGEKP +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C ++ +H R HTGEKP +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C + + +RH R HTG KP +
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.93
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
SA + +H R HTG +P
Sbjct: 23 GLSAELVRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ CD C + L H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 44.1 bits (105), Expect = 9e-07
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A I +T L +H H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 39.9 bits (94), Expect = 3e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
TG+KPYEC C QN+S+ H + H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG+KPYEC C QN+S+ H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECN 46
Y C C + +H R HTGEKP +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECN 327
Y C C + +H R HTGEKP +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.9 bits (63), Expect = 0.63
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 115 FQCFRCRYSNKFRSNFLRHIR-THTGHKPYACT 146
++C C + ++ +RH R HTG KP +
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 26.4 bits (59), Expect = 2.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG++P+ C C + Q +L H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 25.6 bits (57), Expect = 4.4
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 217 RQSAHMRQHLRK-HTGRRPFPC 237
Q+ + +H R HTG +P
Sbjct: 23 IQNTSLIRHWRYYHTGEKPSGP 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG I DL H +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+C C ++ H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 37.9 bits (89), Expect = 1e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C C ++ H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + D+ H HTGEKP +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + D+ H HTGEKP +
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
R + H HTG KP +
Sbjct: 25 RRDLYTHHMVHTGEKPSGPS 44
Score = 26.0 bits (58), Expect = 3.1
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ H HTG +P
Sbjct: 23 ICRRDLYTHHMVHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + +L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C++CG A + L H ++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSH 35
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+C+ C T+ S +H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C+ C T+ S +H H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C K + H + HTGE+ +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C K + H + HTGE+ +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + +S H ++HTG + +
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 29.0 bits (66), Expect = 0.26
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + +K L +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 26.3 bits (59), Expect = 2.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 218 QSAHMRQHLRKHTGRRPFPC 237
+ + + H + HTG R
Sbjct: 24 RKSGLHIHQQSHTGERHSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C++C L + L H +R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSH 35
Score = 38.7 bits (91), Expect = 8e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG KPY C+ C + S + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 38.7 bits (91), Expect = 8e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG KPY C+ C + S + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R HTG KP +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R HTG KP +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C +C + +S + H R+HTG KP +
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + + K L +H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 26.3 bits (59), Expect = 1.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H R HTG +P
Sbjct: 23 SLKSQLIVHQRSHTGVKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G KPY C+ECG A + L H R H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
GEKPY C+ C + S + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
GEKPY C+ C + S + H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C + +S + H+RTH+G KP +
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C K + H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.010
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C K + H+R H+GEKP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.91
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 218 QSAHMRQHLRKHTGRRPFPC 237
+++ H+R H+G +P
Sbjct: 24 SKSYLIIHMRTHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G +P+ C C + + K L +H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A +L +H +RIH
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY C C Q +++ H Q I T E
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH-----QRIHTGE 38
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY C C Q +++ H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
YRC C K ++ +H R HTGEKP +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
YRC C K ++ +H R HTGEKP +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + ++N +H R HTG KP +
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.17
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + AQK NL H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 27.5 bits (62), Expect = 0.77
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q A++ QH R HTG +P
Sbjct: 23 AQKANLTQHQRIHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C+EC A ++L H +R H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKP+EC+ C S++ H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 38.2 bits (90), Expect = 1e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP+EC+ C S++ H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C+ + +SN + H RTHTG KP +
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.007
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
+ C C K ++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
+ C C K ++ H R HTGEKP
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.46
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF C C+ + K NL +H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 26.7 bits (60), Expect = 1.8
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ H R HTG +P
Sbjct: 23 NTKSNLIVHQRTHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 1e-06
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C+ECG A T L +H RIH
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIH 35
Score = 36.3 bits (85), Expect = 5e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKPY+C+ C +++ ++ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 36.3 bits (85), Expect = 5e-04
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPY+C+ C +++ ++ H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + +H R HTG +P +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + +H R HTG +P +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + ++ H R HTG++P +
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 28.2 bits (64), Expect = 0.47
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ H+ +H R HTG RP
Sbjct: 23 HRHTHLNEHRRIHTGYRPSGP 43
Score = 25.5 bits (57), Expect = 4.0
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ C C + + +L H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 1e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C CG A +S+ L +H +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+C +C +S + H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C +C +S + H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C VC R + +H H+GE+P +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C VC R + +H H+GE+P +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 30.9 bits (71), Expect = 0.041
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + + S+ ++H H+G +P +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 29.0 bits (66), Expect = 0.20
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R S+H+ QH H+G RP
Sbjct: 23 RVSSHLVQHHSVHSGERPSGP 43
Score = 26.3 bits (59), Expect = 2.4
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C +C + +L H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A + + L H + IH
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TG KPY CN C + SS+ H Q I T E
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-----QVIHTGE 38
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG KPY CN C + SS+ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + H HTGEKP +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + H HTGEKP +
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.092
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 127 RSNFLRHIRTHTGHKPYAC 145
S+ H HTG KP
Sbjct: 25 YSSLTTHQVIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.1
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H HTG +P
Sbjct: 23 SVYSSLTTHQVIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 5.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + + +L H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 44.8 bits (107), Expect = 2e-06
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
RH R HTGH+P+ C +C A S L H+ + H
Sbjct: 51 DELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM-KRHF 89
Score = 39.8 bits (94), Expect = 8e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 31 KKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+H RKHTG +P++C CD +++ + HMK
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 39.8 bits (94), Expect = 9e-05
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 312 KKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+H RKHTG +P++C CD +++ + HMK
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+S + +H RKHTG RPF C C+ + ++ +L +HM
Sbjct: 49 RSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 37.1 bits (87), Expect = 8e-04
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHM--H-----FLCHHCNRFGSR 267
+S+H++ HLR HTG +P+ CD C + A+ L H H F C C+R SR
Sbjct: 19 KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR 77
Score = 36.7 bits (86), Expect = 0.001
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 127 RSNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
S+ H+RTHTG KPY C CG+ S +L +H R H
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKH 60
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 31 KKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 62
K H+R HTGEKPY C+ C +K ++ + H
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 34.8 bits (81), Expect = 0.005
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 312 KKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 343
K H+R HTGEKPY C+ C +K ++ + H
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 26.7 bits (60), Expect = 4.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 36 KHTGEKPYECNLCDYKATQNSSIHFHM 62
K T + C T++S + H+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL 27
Score = 26.7 bits (60), Expect = 4.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 317 KHTGEKPYECNLCDYKATQNSSIHFHM 343
K T + C T++S + H+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL 27
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C ECG + ++ L H +RIH
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIH 35
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKP+EC C + NS + H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP+EC C + NS + H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C + H R HTGE P +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C + H R HTGE P +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+C C S F S + H R HTG P +
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
++ + H R HTG P
Sbjct: 23 SFNSQLIVHQRIHTGENPSGP 43
Score = 25.2 bits (56), Expect = 5.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P C C S + L +H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KP+ C ECG ++ L H +R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKP++C C + TQNS +H H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKP++C C + TQNS +H H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + H R HTGEKP +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + H R HTGEKP +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.039
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C S H R HTG KP +
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.69
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++ + H R HTG +P
Sbjct: 23 TQNSQLHSHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +PF C+ C Q L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG + Y C+ECG A + L H +RIH
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH-QRIH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGE+ YEC+ C + S++ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE+ YEC+ C + S++ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R HTGEKP +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R HTGEKP +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.020
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + +S + H R HTG KP +
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG R + C C + A+K L MH
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + + H R HTG +P
Sbjct: 23 ARKSTLIMHQRIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG +PY C ECG A + L H R H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH-RRSH 35
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG++PYEC C SS+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG++PYEC C SS+ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + K + H R HTGEKP +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + K + H R HTGEKP +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
++C C + K +S+ + H R+HTG KP +
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.26
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG+RP+ C C + K +L H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 27.5 bits (62), Expect = 0.69
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + + H R HTG +P
Sbjct: 23 KTKSSLICHRRSHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A ++ L +H +RIH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+CN C +Q S + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 39.0 bits (92), Expect = 6e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C +Q S + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + +H R HTGEKP +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + +H R HTGEKP +
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.055
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S RH R HTG KP +
Sbjct: 25 TSKLARHQRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.97
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++ + +H R HTG +P
Sbjct: 23 SQTSKLARHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 3.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + +Q L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG K Y C ECG + + L KH ER+H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEK Y C C ++ + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEK Y C C ++ + H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + KH R H+GEKP +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + KH R H+GEKP +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C S L+H R H+G KP +
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.99
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
++ + +H R H+G +P
Sbjct: 23 SRAPCLLKHERLHSGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.5
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG + + C C S ++ L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C C A L +H ++ H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC +C TQ + + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 39.1 bits (92), Expect = 6e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC +C TQ + + H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C VC K + +H + HTGEKP +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C VC K + +H + HTGEKP +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
++C C + +++ +H +THTG KP +
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 28.7 bits (65), Expect = 0.28
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q AH+ QH + HTG +P
Sbjct: 23 TQKAHLAQHQKTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C +C + QK +L H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY+C CG A +LS L +H R+H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVH 35
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKPY CN+C ++ ++ H++V
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
TGEKPY CN+C ++ ++ H++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C VC + +H+R HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 32.5 bits (75), Expect = 0.015
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C VC + +H+R HT E +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 30.6 bits (70), Expect = 0.058
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C + ++ +H+R HT +
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD 238
SAH+ QHLR HT
Sbjct: 23 VLSAHLNQHLRVHTQETLSGPS 44
Score = 27.9 bits (63), Expect = 0.50
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
TG +P+ C++C + +L H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A + ++L KH ++IH
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKPY C C T S++ H K+
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY C C T S++ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + ++ KH + HT +KP +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + ++ KH + HT +KP +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+ C C + RSN ++H + HT KP +
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 25.9 bits (58), Expect = 3.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + + NL H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 25.6 bits (57), Expect = 3.6
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ +H + HT ++P
Sbjct: 23 TIRSNLIKHQKIHTKQKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H +RIH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY+CN C NS + H Q I T E
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH-----QRIHTGE 38
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C NS + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + RH + +H R HTGEKP +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 9e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + RH + +H R HTGEKP +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
++C C + S RH R HTG KP +
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.62
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
++C C + R ++++ +H R HTG +P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C ECG DL H +R+H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKPY+C C + + FH
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 39.1 bits (92), Expect = 6e-05
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPY+C C + + FH
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + D+ H R HTGEK +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + D+ H R HTGEK +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C K R + H R HTG K +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 27.5 bits (62), Expect = 0.73
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD 238
++ + H R HTG +
Sbjct: 23 KRRLDLDFHQRVHTGEKLSGPS 44
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ C C ++ +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG + I + L +H RIH
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY CN C Q S ++ H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY CN C Q S ++ H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + +H R HTGEKP +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + +H R HTGEKP +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
+ C C S +S+ RH R HTG KP +
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.60
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q +H+ +H R HTG +P
Sbjct: 23 IQKSHLNRHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C S QK +L H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 2e-06
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG +P+ C ECG + I S L +H +RIH
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGE+P++CN C Q++ + H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE+P++CN C Q++ + H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + +H R HTGEKP +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + +H R HTGEKP +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 30.9 bits (71), Expect = 0.042
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+C C S ++ ++H R HTG KP +
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.21
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
QSAH+ QH R HTG +P
Sbjct: 23 IQSAHLIQHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.80
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG RP C+ C S Q +L H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A + L H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-QATH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY+CN C SS+ H QA + E
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH-----QATHSGE 38
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C SS+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C R + + H H+GEKP +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C R + + H H+GEKP +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.011
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + + RS+ H TH+G KP +
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.81
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R + + H H+G +P
Sbjct: 23 RARSSLAIHQATHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + + +L +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A ++L H ++IH
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIH 35
Score = 38.6 bits (91), Expect = 8e-05
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY C C T S++ H Q I T E
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-----QKIHTGE 38
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY C C T S++ H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
YRC C + ++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
YRC C + ++ H + HTGEKP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
++C C + RSN H + HTG KP
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + + NL H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 25.9 bits (58), Expect = 3.0
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ H + HTG +P
Sbjct: 23 TDRSNLFTHQKIHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C++CG + + LR H ++ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCH 35
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+C+ C T S + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C+ C T S + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C K ++ H + HTGE+ +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C K ++ H + HTGE+ +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S ++S H + HTG + +
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 27.5 bits (62), Expect = 0.77
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C S K L++H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.3 bits (59), Expect = 1.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ +R H + HTG R
Sbjct: 23 TWKSRLRIHQKCHTGERHSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L H +RIH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + H R HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + H R HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 30.6 bits (70), Expect = 0.055
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S+ H R HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 27.5 bits (62), Expect = 0.71
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ H R HTG +P
Sbjct: 23 TQNSHLANHQRIHTGVKPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C Q +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.6 bits (101), Expect = 3e-06
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A ++ +H +R+H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLH 35
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKPY+C C NSS H ++
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C C NSS H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C +H R HTG++P +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C +H R HTG++P +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 31.0 bits (71), Expect = 0.041
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + S+ +H R HTG +P +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 27.2 bits (61), Expect = 0.94
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
++ QH R HTG+RP
Sbjct: 23 GDNSSCTQHQRLHTGQRPSGP 43
Score = 24.5 bits (54), Expect = 8.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 3e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C +CG A + + L H + IH
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIH 35
Score = 39.8 bits (94), Expect = 4e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPYECN C + SS+ H QAI T +
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH-----QAIHTGK 38
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYECN C + SS+ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + + H HTG+KP +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + + H HTG+KP +
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
RS+ H HTG KP +
Sbjct: 25 RSSLTTHQAIHTGKKPSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + + + +L H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 26.0 bits (58), Expect = 2.9
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H HTG++P
Sbjct: 23 SVRSSLTTHQAIHTGKKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 44.8 bits (105), Expect = 3e-06
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 2/110 (1%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHST 277
+ + + TG F C C + L +HM+ H+ + D + S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 278 QCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGDVKKHVRK--HTGEKPYE 325
+ + +C C + D+ H+ K H +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 41.7 bits (97), Expect = 4e-05
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 39/137 (28%)
Query: 30 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGD 89
K + TG + C C + HM
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNET------------------------ 42
Query: 90 LSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECG 149
D + R+S + + L K C CG
Sbjct: 43 ------GHYRDDNHETD---------NNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCG 87
Query: 150 YASILSTDLRKHIERIH 166
++ DL H+ +
Sbjct: 88 HSFESLQDLSVHMIKTK 104
Score = 40.1 bits (93), Expect = 1e-04
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 31/128 (24%)
Query: 127 RSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHN 186
S+ + TG + C +C A +L H
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH------------------------- 38
Query: 187 LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQ 246
+ + + + + + K ++ C C +S
Sbjct: 39 ------MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFES 92
Query: 247 KWNLKMHM 254
+L +HM
Sbjct: 93 LQDLSVHM 100
Score = 29.3 bits (65), Expect = 0.80
Identities = 7/49 (14%), Positives = 14/49 (28%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
+ K + + K +K +C C + + HM
Sbjct: 53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 3e-06
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C CG + + L +H +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKP++C++C S ++ H V
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP++C++C S ++ H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 35.5 bits (83), Expect = 0.001
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C +C + + +H HT EKP +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 35.5 bits (83), Expect = 0.001
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C +C + + +H HT EKP +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.007
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C S RS RH HT KP +
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.46
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF CD+C S + L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 27.8 bits (63), Expect = 0.66
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD 238
+ + +H HT +P
Sbjct: 23 CGRSRLNRHSMVHTAEKPSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.5 bits (101), Expect = 3e-06
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G KPY C CG + LR H IH
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH-VLIH 34
Score = 39.8 bits (94), Expect = 3e-05
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GEKPY+C C + Q + + H+ +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHM 343
GEKPY+C C + Q + + H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 32.5 bits (75), Expect = 0.011
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
Y+C C ++ HV HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 32.5 bits (75), Expect = 0.011
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
Y+C C ++ HV HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 29.8 bits (68), Expect = 0.12
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
G +P+ C+ C Q +L+ H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 29.4 bits (67), Expect = 0.15
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 127 RSNFLRHIRTHTGHKPYA 144
++ H+ HTG P +
Sbjct: 24 VAHLRAHVLIHTGSGPSS 41
Score = 27.5 bits (62), Expect = 0.65
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 218 QSAHMRQHLRKHTGRRPF 235
Q AH+R H+ HTG P
Sbjct: 23 QVAHLRAHVLIHTGSGPS 40
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG P+ C+ECG T+L H ++IH
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH-QKIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGE P+ C+ C T +++ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE P+ C+ C T +++ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C + HK ++ H + HTGE+P +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C + HK ++ H + HTGE+P +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F C C ++N + H + HTG +P +
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 27.5 bits (62), Expect = 0.70
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG PF C C K NL +H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
++ H + HTG RP
Sbjct: 23 THKTNLIIHQKIHTGERPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C+ CG A L H +RIH
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC++C + S+ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC++C + S+ H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C VC H+ + H R H+G+KP +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C VC H+ + H R H+G+KP +
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 31.7 bits (73), Expect = 0.027
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
R + H R H+G KP +
Sbjct: 25 RQSLSVHQRIHSGKKPSGPS 44
Score = 26.7 bits (60), Expect = 1.6
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C +C + + + +L +H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ H R H+G++P
Sbjct: 23 SHRQSLSVHQRIHSGKKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C+ CG + + L H ++IH
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIH 35
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC++C T+ S +H H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 41.0 bits (97), Expect = 1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC++C T+ S +H H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C +C K + H + HTGEKP +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C +C K + H + HTGEKP +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.029
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S +S H + HTG KP +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.51
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C +C S +K L +H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + + H + HTG +P
Sbjct: 23 TKKSQLHVHQQIHTGEKPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C C A L +H +R+H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH-QRVH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC++C + ++S+ H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC++C + ++S+ H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C VC H + +H R H+GEKP +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C VC H + +H R H+GEKP +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C CR + ++ +H R H+G KP +
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.64
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ CD+C + + +L H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
A + QH R H+G +P
Sbjct: 23 SHHASLTQHQRVHSGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KP+ C ECG A + L H RIH
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIH 35
Score = 38.6 bits (91), Expect = 9e-05
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+GEKP++C C QN + H+++
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 38.2 bits (90), Expect = 1e-04
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKP++C C QN + H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C R + H+R HTGEKP +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C R + H+R HTGEKP +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C + + + H+R HTG KP +
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.34
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
RQ+ H+ HLR HTG +P
Sbjct: 23 RQNIHLASHLRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 3.2
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +PF C C + Q +L H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ + K + C ECG L + L +H +RIH
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+ K ++C+ C T S ++ H ++
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 36.8 bits (86), Expect = 4e-04
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+ K ++C+ C T S ++ H +
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR 33
Score = 31.4 bits (72), Expect = 0.034
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
QC C +S+ +H R HTG KP +
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
++C C K + +H R HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
++C C K + +H R HTGEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+H+ QH R HTG +P
Sbjct: 23 TLKSHLNQHQRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.4
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+ + C C K +L H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C++CG + I + L H +RIH
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH-QRIH 35
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC+ C + S +H H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC+ C + S +H H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R HTGE P +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R HTGE P +
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 31.4 bits (72), Expect = 0.028
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
++C C S +S H R HTG P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 28.3 bits (64), Expect = 0.35
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C S +K L +H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + + H R HTG P
Sbjct: 23 IKKSQLHVHQRIHTGENPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C +CG A L +H RIH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIH 35
Score = 38.7 bits (91), Expect = 9e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKP++C C + + ++ H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 38.7 bits (91), Expect = 9e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP++C C + + ++ H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C + +H R HTGEKP +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C + +H R HTGEKP +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F C C + +H R HTG KP +
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.60
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF C C + + L H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 27.9 bits (63), Expect = 0.62
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ QH R HTG +P
Sbjct: 23 SDHIGLNQHRRIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG + Y C+ECG A I + L H +RIH
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGE+ YEC+ C Q S++ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE+ YEC+ C Q S++ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R H GEKP +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R H GEKP +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + +S H R H G KP +
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.28
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG R + C C + QK L MH
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q + + H R H G +P
Sbjct: 23 IQKSTLSMHQRIHRGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.2 bits (100), Expect = 4e-06
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KP+ C ECG ++ H +R H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKP++C C NS + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKP++C C NS + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 34.5 bits (80), Expect = 0.002
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECG 149
F+C C S H R+H+G KP G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP-SSG 46
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C H R H+GEKP +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C H R H+GEKP +
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.71
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCD 238
F+C C ++ H R H+G +P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 26.0 bits (58), Expect = 2.4
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +PF C+ C H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.2 bits (100), Expect = 4e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP CTECG A + L H +R H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKP +C C S + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP +C C S + H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+C C + ++S + H RTH K +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+C C K + H R H +K +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+C C K + H R H +K +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 26.0 bits (58), Expect = 2.7
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H R H +
Sbjct: 23 CWKSQLIMHQRTHVDDKHSGP 43
Score = 25.6 bits (57), Expect = 3.9
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P C C + K L MH
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C ECG + L H ++H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKP++C C ++ S+++ H K+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP++C C ++ S+++ H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + + H + HTGEKP +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + + H + HTGEKP +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C RS H + HTG KP +
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.85
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF C C +++ L +H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 27.1 bits (61), Expect = 1.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 218 QSAHMRQHLRKHTGRRPFPC 237
+ + + H + HTG +P
Sbjct: 24 RRSALNVHHKLHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG K Y C ECG ++ L +H ++IH
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEK Y+CN C ++NS + H K+
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEK Y+CN C ++NS + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + +H + HTGEKP +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + +H + HTGEKP +
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.16
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S +H + HTG KP +
Sbjct: 25 NSQLSQHQKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.92
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ + QH + HTG +P
Sbjct: 23 SRNSQLSQHQKIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG + + C+ C ++ L H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H IH
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIH 35
Score = 37.8 bits (89), Expect = 1e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+CN C TQNS + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 37.8 bits (89), Expect = 1e-04
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C TQNS + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.061
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S+ +RH HTG KP +
Sbjct: 25 NSHLVRHRGIHTGEKPSGPS 44
Score = 27.4 bits (62), Expect = 0.86
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ +H HTG +P
Sbjct: 23 TQNSHLVRHRGIHTGEKPSGP 43
Score = 24.7 bits (55), Expect = 7.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C Q +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 4e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H + IH
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKPY+C+ C +NS + H +
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
TGEKPY+C+ C +NS + H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL 33
Score = 33.2 bits (77), Expect = 0.007
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + R + +H HTGEKP +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 33.2 bits (77), Expect = 0.007
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + R + +H HTGEKP +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.025
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + S+ RH HTG KP +
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 27.4 bits (62), Expect = 0.70
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R+++H+ +H HTG +P
Sbjct: 23 RRNSHLARHQLIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 9.4
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + +L H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A +T L +H +R+H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYEC C +Q + + H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYEC C +Q + + H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + +H R HTGEKP +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + +H R HTGEKP +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 31.3 bits (72), Expect = 0.030
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + ++ ++H R HTG KP +
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.28
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q+ H+ QH R HTG +P
Sbjct: 23 SQTTHLIQHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C C + +Q +L H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ + KPY C +CG +L H +R+H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+ EKPY+C C + ++ H +V
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 37.5 bits (88), Expect = 2e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+ EKPY+C C + ++ H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 33.2 bits (77), Expect = 0.007
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + ++ H R H GEK +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 33.2 bits (77), Expect = 0.007
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + ++ H R H GEK +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 32.1 bits (74), Expect = 0.019
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C R N H R H G K +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 27.8 bits (63), Expect = 0.56
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+ +P+ C+ C ++ NL MH
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 25.9 bits (58), Expect = 2.7
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ ++ H R H G +
Sbjct: 23 NRRLNLDMHQRVHMGEKTSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C ECG ++ L H RIH
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIH 35
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKPY+CN C TQNS + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPY+CN C TQNS + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + H R HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + H R HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 127 RSNFLRHIRTHTGHKPYACTE 147
S+ H R HTG KP +
Sbjct: 25 NSHLTNHWRIHTGEKPSGPSS 45
Score = 27.8 bits (63), Expect = 0.50
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ H R HTG +P
Sbjct: 23 TQNSHLTNHWRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.4
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ C+ C Q +L H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG PY C ECG A L H +R H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH-QRTH 35
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGE PYEC+ C ++ + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGE PYEC+ C ++ + H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R H GEKP +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R H GEKP +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + + + H RTH G KP +
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.54
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG P+ C C + ++K+ L H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 27.1 bits (61), Expect = 0.97
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + H R H G +P
Sbjct: 23 SRKYQLISHQRTHAGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 42.1 bits (100), Expect = 5e-06
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ CT CG + +L H +RIH
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH-QRIH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TG+KP+EC C ++ H Q I T E
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH-----QRIHTGE 38
Score = 37.9 bits (89), Expect = 1e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG+KP+EC C ++ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C R KG++ H R HTGEK +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C R KG++ H R HTGEK +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C S + + N + H R HTG K +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 29.4 bits (67), Expect = 0.18
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
F+C C R ++ H R HTG + P
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 28.7 bits (65), Expect = 0.30
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG++PF C C S K NL H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 5e-06
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C C + + L H +RIH
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY+C++C SS+ H Q I T E
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH-----QRIHTGE 38
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C++C SS+ H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C VC R+ + H R HTGEKP +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C VC R+ + H R HTGEKP +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
++C C S ++ S+ H R HTG KP +
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.30
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ CD+C S +L +H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 25.9 bits (58), Expect = 2.4
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R + + H R HTG +P
Sbjct: 23 RYGSSLTVHQRIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G KPY C +CG A L H R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH-IRVH 34
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GEKPY C+ C +Q S+ H++V
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 39.9 bits (94), Expect = 3e-05
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
GEKPY C+ C +Q S+ H++
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
Score = 31.0 bits (71), Expect = 0.040
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
++C +C + + + + HIR HTG P +
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 31.0 bits (71), Expect = 0.044
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
YRC C KG + H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 31.0 bits (71), Expect = 0.044
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
YRC C KG + H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.5 bits (67), Expect = 0.13
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
G +P+ CD C + +QK +L +H+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 25.2 bits (56), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPF 235
++C C Q + H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 43.0 bits (102), Expect = 5e-06
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
S RH + H G+ C + T KH+ H
Sbjct: 47 SRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 38.0 bits (89), Expect = 4e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 127 RSNFLRHIRTHTGHKPYACTE--CGYASILSTDLRKHIERIH 166
+ H +HT PY C C L + L++H E++H
Sbjct: 16 HNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVH 56
Score = 34.1 bits (79), Expect = 0.008
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 312 KKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
K+H + H G + + C + + H+ H
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 34.1 bits (79), Expect = 0.008
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 31 KKHVRKHTGEKPYECN--LCDYKATQNSSIHFHMKV 64
K H HT + PYEC CD + + S + H KV
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 9/60 (15%)
Query: 217 RQSAHMRQHLRKHTGRRPFPCD--MCEYSAAQKWNLKMHMH-------FLCHHCNRFGSR 267
++ ++ H HT + P+ C C+ + LK H C+ G
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKT 73
Score = 33.7 bits (78), Expect = 0.013
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 312 KKHVRKHTGEKPYECN--LCDYKATQNSSIHFHMK 344
K H HT + PYEC CD + + S + H K
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54
Score = 33.0 bits (76), Expect = 0.024
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 31 KKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
K+H + H G + + C + + H+
Sbjct: 50 KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 31.4 bits (72), Expect = 0.074
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+ +++H + H G D C + H+
Sbjct: 45 LPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 6e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG K + CTECG A + L H ++IH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIH 35
Score = 38.7 bits (91), Expect = 9e-05
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TG K +EC C T+ S++ H Q I T E
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH-----QKIHTGE 38
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG K +EC C T+ S++ H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C K + H + HTGEKP +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C K + H + HTGEKP +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.024
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C + +S H + HTG KP +
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.77
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG + F C C + +K L MH
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 26.7 bits (60), Expect = 1.5
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ + + H + HTG +P
Sbjct: 23 TRKSTLSMHQKIHTGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG PY C ECG L H ++ H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 32 KHVRKHTGEKPYECNLCDYKA-TQNSSIHFHMKV 64
TGE PYEC C K ++ + H K
Sbjct: 2 SSGSSGTGENPYECCECG-KVFSRKDQLVSHQKT 34
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 313 KHVRKHTGEKPYECNLCDYKA-TQNSSIHFH 342
TGE PYEC C K ++ + H
Sbjct: 2 SSGSSGTGENPYECCECG-KVFSRKDQLVSH 31
Score = 30.5 bits (70), Expect = 0.064
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 127 RSNFLRHIRTHTGHKPYAC 145
+ + H +TH+G +
Sbjct: 25 KDQLVSHQKTHSGQSGPSS 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C + K + H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 29.8 bits (68), Expect = 0.13
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C + K + H + H+G+
Sbjct: 13 YECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 25.5 bits (57), Expect = 3.6
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 218 QSAHMRQHLRKHTGRRPFPC 237
+ + H + H+G+
Sbjct: 24 RKDQLVSHQKTHSGQSGPSS 43
Score = 24.8 bits (55), Expect = 7.9
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG P+ C C ++K L H
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 6e-06
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KP+ C ECG + L +H +R+H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVH 35
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
TGEKP++C C Q + H +V
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKP++C C Q + H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + + +H R HTGEKP +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + + +H R HTGEKP +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.021
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C S R + +H R HTG KP +
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.33
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
F+C C Q H+ QH R HTG +P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +PF C C S Q+ +L H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.8 bits (99), Expect = 6e-06
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G + + C++CG + +++ +H RIH
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GE+ + C+ C Q S+ H ++
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 37.5 bits (88), Expect = 2e-04
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
GE+ + C+ C Q S+ H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+C C SNF++H R HTG KP +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.035
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+RC C + +H R HTGEKP +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.035
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+RC C + +H R HTGEKP +
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.76
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
+C C Q+++ QH R HTG +P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.93
Identities = 7/30 (23%), Positives = 7/30 (23%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G R C C Q N H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 6e-06
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A ++L H + IH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIH 35
Score = 36.3 bits (85), Expect = 6e-04
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
TGEKPY+CN C +S++ H Q I T E
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-----QVIHTGE 38
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C +S++ H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C R ++ H HTGEKP +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C R ++ H HTGEKP +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.017
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C + + SN H HTG KP +
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.93
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + NL H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
R +++ H HTG +P
Sbjct: 23 RAHSNLTTHQVIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 41.7 bits (99), Expect = 6e-06
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C EC A ++L H +R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH-QRTH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPYECN C S++ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPYECN C S++ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 33.2 bits (77), Expect = 0.007
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C K ++ H R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C K ++ H R HTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.007
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
++C C+ + +SN + H RTHTG +
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 28.2 bits (64), Expect = 0.41
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C+ + K NL +H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 26.7 bits (60), Expect = 1.6
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+++ H R HTG
Sbjct: 23 NTKSNLMVHQRTHTGESGPSS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 7e-06
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C ECG + L H +R H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKPY CN C +Q S + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKPY CN C +Q S + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C K + H R HTGEKP +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C K + H R HTGEKP +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
+ C C + +S H RTHTG KP +
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q + + H R HTG +P
Sbjct: 23 SQKSILSAHQRTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +P+ C+ C + +QK L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 41.8 bits (99), Expect = 7e-06
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ + KPY C CG L HI+++H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECNLC 48
Y C C + H+++ HT E+P++C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 34.1 bits (79), Expect = 0.005
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECNLC 329
Y C C + H+++ HT E+P++C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 33.7 bits (78), Expect = 0.006
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 115 FQCFRCRYSNKFRSNFLRHI-RTHTGHKPYACTECG 149
+ C C + HI + HT +P+ C
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 32.6 bits (75), Expect = 0.015
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 217 RQSAHMRQHLRK-HTGRRPFPCDMC 240
+ H+ H+++ HT RP C +
Sbjct: 23 SRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 31.8 bits (73), Expect = 0.025
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+ KPY C C ++ ++ H+K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 30.6 bits (70), Expect = 0.067
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
+ KPY C C ++ ++ H+K
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 7e-06
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KP+ C ECG ++ L H +R+H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVH 35
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
+GEKP++C C + TQNS +H H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEKP++C C + TQNS +H H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + H R HTGEKP +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + H R HTGEKP +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.034
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
FQC C S+ H R HTG KP +
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.15
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
FQC C Q++H+ H R HTG +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.81
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +PF C+ C Q +L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 8e-06
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG A ++ L +H +R+H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVH 35
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG KPY+CN C +Q S + H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 39.1 bits (92), Expect = 6e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG KPY+CN C +Q S + H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + +H R HTGEKP +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + +H R HTGEKP +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 31.4 bits (72), Expect = 0.038
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+QC C + S RH R HTG KP +
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.94
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++ + +H R HTG +P
Sbjct: 23 SQTSKLARHQRVHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C + +Q L H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 41.3 bits (98), Expect = 9e-06
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G KPY C CG L+ H+ RIH
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL-RIH 34
Score = 39.0 bits (92), Expect = 6e-05
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GEKPY C +C + ++ H+++
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 38.6 bits (91), Expect = 8e-05
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHM 343
GEKPY C +C + ++ H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
Y C +C RH +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
Y C +C RH +K H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 34.4 bits (80), Expect = 0.002
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
G +P+PC++C LK H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 30.9 bits (71), Expect = 0.037
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 115 FQCFRCRYSNKFR--SNFLRHIRTHTGHKPYA 144
+ C C +FR H+R HTG P +
Sbjct: 12 YPCEIC--GTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 27.5 bits (62), Expect = 0.63
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPF 235
R ++ HLR HTG P
Sbjct: 22 RHLQTLKSHLRIHTGSGPS 40
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 9e-06
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G KPY C EC I L +H +R+H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVH 35
Score = 36.0 bits (84), Expect = 9e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+G+KPYEC C Q ++ H +V
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+G+KPYEC C Q ++ H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C G + +H R HTGE+ +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C G + +H R HTGE+ +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTE 147
++C CR + + +H R HTG + +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 30.2 bits (69), Expect = 0.091
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q H+ QH R HTG R
Sbjct: 23 IQIGHLNQHKRVHTGERSSGP 43
Score = 24.4 bits (54), Expect = 9.8
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G++P+ C C + Q +L H
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G K + C EC ++ LR H + +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVH 35
Score = 39.8 bits (94), Expect = 4e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GEK ++C CD +Q SS+ H V
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 38.7 bits (91), Expect = 7e-05
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
GEK ++C CD +Q SS+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C ++ H H GEKP +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C ++ H H GEKP +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.042
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S+ H H G KP +
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.3
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G + + C C+ +Q +L++H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 26.7 bits (60), Expect = 1.4
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++ +R H H G +P
Sbjct: 23 SQASSLRLHQNVHVGEKPSGP 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 54/416 (12%), Positives = 105/416 (25%), Gaps = 119/416 (28%)
Query: 2 GIAYLN----DRRNVIM------YRCFVCPYLSRHKG---------DVKKHVRKHTGEKP 42
I +LN + ++ + SR ++ +R+ KP
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 43 YECNLCDYKATQNSSIHFHMKVGVQAIFTSENV----VLSGLHSCVHCYGDLSSA-TETE 97
YE L QN+ + + + T+ LS + S T E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 98 LLDHCMQC--SRDTCIP--------------------------GWFQ------------C 117
+ ++ R +P W
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 118 FRCRYSNKFRSNFLR--------HIRTHT-----GHKPYACTE-----CGYASILSTDLR 159
++R F R HI T + S++ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 160 KHIERIHMPQFVEDVRHCVHCNKEMHN-LDESFLLKHCKYCPSLRTVGFQCYLCLYITRQ 218
+ I +++ + +H + + + + L Y +I
Sbjct: 423 ESTISIPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--- 477
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCN-RFGSRDIGDLIEHST 277
H HL+ + ++ L M FL + RF + I H +
Sbjct: 478 -GH---HLKN--------IEH-----PERMTL-FRMVFL----DFRF----LEQKIRHDS 511
Query: 278 QCSVMGIAYLNDRRNVIMYRCFVC---PYLSRHKGDVKKHVRKHTGEKPYECNLCD 330
+ LN + + Y+ ++C P R + + K E D
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTD 566
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C +CG +L H +++H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVH 35
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+C C ++ H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 39.4 bits (93), Expect = 5e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+C C ++ H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C K ++ H + HTGE+P +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C K ++ H + HTGE+P +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 32.5 bits (75), Expect = 0.011
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C +C + N H + HTG +P +
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 28.6 bits (65), Expect = 0.29
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C K+NL MH
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 27.1 bits (61), Expect = 0.94
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
++ H + HTG RP
Sbjct: 23 NSKFNLDMHQKVHTGERPSGP 43
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 42.2 bits (100), Expect = 2e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
RH R HTG KP+ C C + S L H+ + H
Sbjct: 65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHM-KRH 98
Score = 40.7 bits (96), Expect = 5e-05
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
++ +H RKHTG KP++C +C+ +++ + HMK
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 40.7 bits (96), Expect = 6e-05
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
++ +H RKHTG KP++C +C+ +++ + HMK
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 39.5 bits (93), Expect = 2e-04
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+S + +H RKHTG +PF C +C S ++ +L +HM
Sbjct: 59 RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 36.8 bits (86), Expect = 0.001
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 128 SNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
S+ H+RTHTG KPY CT C + S +L +H R H
Sbjct: 31 SHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKH 70
Score = 34.5 bits (80), Expect = 0.007
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 31 KKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 62
K H+R HTGEKPY+C CD++ ++ + H
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Score = 34.5 bits (80), Expect = 0.007
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 312 KKHVRKHTGEKPYECNL--CDYKATQNSSIHFHM 343
K H+R HTGEKPY+C CD++ ++ + H
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G K + C EC S+ L H +RIH
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIH 35
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
G+K ++CN C TQ+SS+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 39.4 bits (93), Expect = 4e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
G+K ++CN C TQ+SS+ H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + H R HTGEKP +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + H R HTGEKP +
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.094
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S+ H R HTG KP +
Sbjct: 25 SSSLTVHQRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G++ F C+ C+ + Q +L +H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 26.3 bits (59), Expect = 1.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
QS+ + H R HTG +P
Sbjct: 23 TQSSSLTVHQRIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ T K Y C ECG A L +H ++IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH-QKIH 35
Score = 37.2 bits (87), Expect = 3e-04
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSG 79
T K Y CN C T+ + H Q I T ++ SG
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH-----QKIHTRKSGPSSG 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
T K Y CN C T+ + H K
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQK 33
Score = 25.2 bits (56), Expect = 4.6
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
T + + C+ C + + ++L H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
+ +G K + C ECG + LR H +R+HM
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHM 36
Score = 37.2 bits (87), Expect = 3e-04
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+GEK + C+ C S++ H +V
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 36.4 bits (85), Expect = 5e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GEK + C+ C S++ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 28.7 bits (65), Expect = 0.28
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C + ++ H R H GEK +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 28.7 bits (65), Expect = 0.28
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C + ++ H R H GEK +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.9 bits (63), Expect = 0.56
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
C C + + S H R H G K +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 25.2 bits (56), Expect = 4.5
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G + CD C + L++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H IH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 39.4 bits (93), Expect = 5e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.5 bits (70), Expect = 0.054
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S+ RH HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.85
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ +H HTG +P
Sbjct: 23 TQNSHLARHRGIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 6.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C Q +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G PY C++C + L H +R+H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMH 35
Score = 38.3 bits (90), Expect = 1e-04
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
G PY+C+ C+ + + H ++
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 37.9 bits (89), Expect = 1e-04
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
G PY+C+ C+ + + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C K + H R HT EKP +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C K + H R HT EKP +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C +C S + L H R HT KP +
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G P+ C CE S + K L +H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ H R HT +P
Sbjct: 23 SGKLRLLVHQRMHTREKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H IH
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIH 35
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TG+KPY+CN C TQNS + H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TG+KPY+CN C TQNS + H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + +H HTGEKP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.091
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S+ RH HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ +H HTG +P
Sbjct: 23 TQNSHLARHRGIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.2
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG++P+ C+ C Q +L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G KPY C+ECG + S L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH-WITH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GEKPY+C+ C + + + H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 35.2 bits (82), Expect = 0.001
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
GEKPY+C+ C + + + H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + +H HT EKP +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 34.1 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + +H HT EKP +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
+QC C S +H THT KP +
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 27.1 bits (61), Expect = 1.1
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
S + QH HT +P
Sbjct: 23 SGSYRLTQHWITHTREKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G K Y C CG S+ L+ H +R+H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVH 35
Score = 38.7 bits (91), Expect = 7e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFH 61
GEK Y+C++C + +Q+S + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 38.7 bits (91), Expect = 7e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFH 342
GEK Y+C++C + +Q+S + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C VC ++ H R HTGEKP +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C VC ++ H R HTGEKP +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.077
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
++C C S+ H R HTG KP +
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.45
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
QS+H++ H R HTG +P
Sbjct: 23 SQSSHLQTHQRVHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.67
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G + + CD+C +Q +L+ H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+G PY C+ECG A L H +R H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH-QRTH 33
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFH 61
+GE PYEC+ C + + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 33.6 bits (78), Expect = 0.005
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFH 342
+GE PYEC+ C + + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISH 29
Score = 33.6 bits (78), Expect = 0.005
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
++C C + + + H RTH G +
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.7 bits (73), Expect = 0.023
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C K + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 31.7 bits (73), Expect = 0.023
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C K + H R H GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.1 bits (61), Expect = 1.1
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 218 QSAHMRQHLRKHTGRRPFPC 237
+ + H R H G
Sbjct: 22 RKDQLISHQRTHAGESGPSS 41
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.1 bits (97), Expect = 2e-05
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
RHIR HTG KP+ C C S L HI R H
Sbjct: 39 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTH 72
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+S + +H+R HTG++PF C +C + ++ +L H+
Sbjct: 33 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 18 FVCPYLSRHK-----GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
+ CP S + ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 299 FVCPYLSRHK-----GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+ CP S + ++ +H+R HTG+KP++C +C +++ + H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 26.9 bits (60), Expect = 2.4
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 216 TRQSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH-------FLCHHCNRFGS 266
++ ++ RP+ C + C+ ++ L H+ F C C R S
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 267 R 267
R
Sbjct: 61 R 61
Score = 25.3 bits (56), Expect = 7.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 128 SNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
+N L ++ +PYAC C S +L +HI RIH
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHI-RIH 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ TG KPY C ECG ++ L +H R+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVH 35
Score = 39.0 bits (92), Expect = 6e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 61
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 39.0 bits (92), Expect = 6e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
TGEKPY+CN C TQNS + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y+C C + + +H R HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 32.5 bits (75), Expect = 0.014
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y+C C + + +H R HTG KP +
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 30.2 bits (69), Expect = 0.088
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S+ RH R HTG KP +
Sbjct: 25 NSHLARHRRVHTGGKPSGPS 44
Score = 27.9 bits (63), Expect = 0.68
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
Q++H+ +H R HTG +P
Sbjct: 23 TQNSHLARHRRVHTGGKPSGP 43
Score = 24.8 bits (55), Expect = 6.5
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
TG +P+ C+ C Q +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 41.0 bits (97), Expect = 3e-05
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 42/108 (38%)
Query: 229 HTGRRPFPCDM--CEYSAAQKWNLKMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAY 286
+G PCD C + + L H +H Q
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKK-----------------YQHIHQ-------- 36
Query: 287 LNDRRNVIMYRCFVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLC 329
+ F CP + K +K+H++ H+ + Y C
Sbjct: 37 ----------KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 40.2 bits (95), Expect = 5e-05
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 128 SNFLRHIRTHTGHKPYACTECG 149
+ H++ H+ + Y C G
Sbjct: 54 KHLKEHMKLHSDTRDYICEFSG 75
Score = 40.2 bits (95), Expect = 5e-05
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 127 RSNFLRHIR-THTGHKPYACTE--CGYASILSTDLRKHIERIH 166
R H + H K ++C E CG + L++H ++H
Sbjct: 22 RQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLH 63
Score = 37.5 bits (88), Expect = 4e-04
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 18 FVCPYLS-----RHKGDVKKHVRKHTGEKPYECNLC 48
F CP + K +K+H++ H+ + Y C
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 34.8 bits (81), Expect = 0.004
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 39/108 (36%)
Query: 137 HTGHKPYACT--ECGYASILSTDLRKHIERIHMPQ--FVEDVRHCVHCNKEMHNLDESFL 192
+G C CG L H + H+ Q F C +SF
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPAC----------GKSF- 50
Query: 193 LKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
H+++H++ H+ R + C+
Sbjct: 51 ------------------------NFKKHLKEHMKLHSDTRDYICEFS 74
Score = 32.5 bits (75), Expect = 0.028
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 26 HKGDVKKHVR-KHTGEKPYECN--LCDYKATQNSSIHFHMKV 64
++ + H + +H +K + C C + HMK+
Sbjct: 21 NRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 32.1 bits (74), Expect = 0.033
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 318 HTGEKPYECNL--CDYKATQNSSIHFHMKLKH 347
+G C+ C + ++ H K +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 31.8 bits (73), Expect = 0.056
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 307 HKGDVKKHVR-KHTGEKPYECN--LCDYKATQNSSIHFHMK 344
++ + H + +H +K + C C + HMK
Sbjct: 21 NRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 29.4 bits (67), Expect = 0.37
Identities = 5/30 (16%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 37 HTGEKPYECNL--CDYKATQNSSIHFHMKV 64
+G C+ C + ++ H K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY 31
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G +P+ C ECG + L H R+H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLH 35
Score = 36.7 bits (86), Expect = 4e-04
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+GE+P++CN C + S + H+++
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 36.4 bits (85), Expect = 6e-04
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFH 342
+GE+P++CN C + S + H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 32.9 bits (76), Expect = 0.008
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
++C C + + H+R H+ EK +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 32.9 bits (76), Expect = 0.008
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
++C C + + H+R H+ EK +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 31.0 bits (71), Expect = 0.040
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F+C C RS+ H+R H+ K +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ +H+ HLR H+ +
Sbjct: 23 GRRSHLAGHLRLHSREKSSGP 43
Score = 24.8 bits (55), Expect = 8.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
+G RPF C+ C ++ +L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ +G +PY C ECG + L +H + H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRH 35
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+GE+PY CN C ++S + H+K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 33.3 bits (77), Expect = 0.006
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+GE+PY CN C ++S + H+K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK 33
Score = 32.1 bits (74), Expect = 0.020
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 127 RSNFLRHIRTHTGHKPYACT 146
S+ + H++ H K +
Sbjct: 25 HSHLIEHLKRHFREKSSGPS 44
Score = 30.2 bits (69), Expect = 0.080
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
Y C C + +H+++H EK +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.2 bits (69), Expect = 0.080
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
Y C C + +H+++H EK +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 27.9 bits (63), Expect = 0.59
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 217 RQSAHMRQHLRKHTGRRPFPC 237
+ +H+ +HL++H +
Sbjct: 23 GRHSHLIEHLKRHFREKSSGP 43
Score = 24.8 bits (55), Expect = 7.8
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+G RP+ C+ C + + +L H+
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 6e-05
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+G KPY+C EC + L +H +++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQH-QKMH 33
Score = 33.8 bits (78), Expect = 0.004
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKV 64
+GEKPY C C + N+ + H K+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 33.5 bits (77), Expect = 0.006
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMKL 345
+GEKPY C C + N+ + H K+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
Score = 26.5 bits (59), Expect = 1.6
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
+ C C+ + + ++H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 24.6 bits (54), Expect = 7.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
Y C C + +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 24.6 bits (54), Expect = 7.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
Y C C + +H + HT +
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 38.7 bits (91), Expect = 6e-05
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+G + Y C ECG + L H ERIH
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-ERIH 33
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSE 73
+G++ YEC C Q S+ H + I T
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH-----ERIHTGS 36
Score = 34.9 bits (81), Expect = 0.002
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFH 342
+G++ YEC C Q S+ H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 31.0 bits (71), Expect = 0.042
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
Y C C R KG + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 31.0 bits (71), Expect = 0.042
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
Y C C R KG + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 30.2 bits (69), Expect = 0.077
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
++C C S + + + H R HTG P +
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 26.8 bits (60), Expect = 1.1
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 217 RQSAHMRQHLRKHTGRRPF 235
RQ + H R HTG P
Sbjct: 21 RQKGSLTLHERIHTGSGPS 39
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 40.3 bits (94), Expect = 7e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 114 WFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
W +C R S K + + HIR HTG K +
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 35.3 bits (81), Expect = 0.004
Identities = 12/102 (11%), Positives = 21/102 (20%), Gaps = 27/102 (26%)
Query: 136 THTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKH 195
C +L H+ H+ ++ C
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE-------------- 64
Query: 196 CKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
C + + H+R HTG + P
Sbjct: 65 -------------CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 31.5 bits (71), Expect = 0.098
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 25/91 (27%)
Query: 247 KWNLKMHMHFLCHHCNR-FGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVC---- 301
KW + + C+R F + +L+ H T V G VC
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMH--ELVTHVTMEHVGGPEQ----------NNHVCYWEE 64
Query: 302 ------PYLSRHKGDVKKHVRKHTGEKPYEC 326
+ +++K + H+R HTGEK
Sbjct: 65 CPREGKSFKAKYK--LVNHIRVHTGEKSGPS 93
Score = 29.2 bits (65), Expect = 0.53
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 31 KKHVRKHTGEKPYEC 45
H+R HTGEK
Sbjct: 79 VNHIRVHTGEKSGPS 93
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
R TG KP+ C +C + S L H + HM
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR-KRHM 35
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 63
R TG KP++C CD +++ + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 35.4 bits (82), Expect = 0.001
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
R TG KP++C CD +++ + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 32.7 bits (75), Expect = 0.009
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R TG +PF C C+ S ++ +L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 37.6 bits (88), Expect = 2e-04
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GE PY C C TQ S+ H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 36.9 bits (86), Expect = 3e-04
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
GE PY C C TQ S+ H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 36.1 bits (84), Expect = 5e-04
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G PY C +CG + L H +R
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH-QRSC 34
Score = 30.7 bits (70), Expect = 0.050
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 43
Y C C +G + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 30.7 bits (70), Expect = 0.050
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPY 324
Y C C +G + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 27.6 bits (62), Expect = 0.57
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYA 144
+ C +C S R + H R+ + P +
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 27.6 bits (62), Expect = 0.65
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
G P+ C C S Q+ +L +H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+G KP+ C+ C A + L H ++ H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTH 33
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFH 61
+GEKP+ C+ C+ + S + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFH 342
+GEKP+ C+ C+ + S + H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 46
+ C C K + H + H EKP +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECN 327
+ C C K + H + H EKP +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACT 146
F C C + +S L H +TH KP +
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 26.7 bits (60), Expect = 1.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPC 237
F C C +++ H + H +P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 24.8 bits (55), Expect = 6.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 229 HTGRRPFPCDMCEYSAAQKWNLKMH 253
+G +PF C CE + + K L +H
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVH 29
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 6e-04
Identities = 42/281 (14%), Positives = 73/281 (25%), Gaps = 117/281 (41%)
Query: 20 CPYLS-RH--KGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIF-TSENV 75
P LS + + V+ +V K P + ++ ++N+
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLP-----------AGKQVEI-------SLVNGAKNL 377
Query: 76 VLSG----LHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSN---KFRS 128
V+SG L YG L + + G Q R +S KF +
Sbjct: 378 VVSGPPQSL------YG-L-----------NLTLRKAKAPSGLDQS-RIPFSERKLKFSN 418
Query: 129 NFLRHIRT--HTGHKPY---ACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKE 183
FL + + H+ A + +++ DL K+ + V + +
Sbjct: 419 RFLP-VASPFHS---HLLVPA------SDLINKDLVKNNVSFNAKDIQIPV-YDTFDGSD 467
Query: 184 MHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYS 243
+ L S + C I R P
Sbjct: 468 LRVLSGSISERIV-----------DC-----IIRL-----------------PVK----- 489
Query: 244 AAQKWNLKMHM---HFLCHHCNRFG---SRDIGDLIEHSTQ 278
W H L FG + +G L +
Sbjct: 490 ----WETTTQFKATHILD-----FGPGGASGLGVLTHRNKD 521
Score = 35.4 bits (81), Expect = 0.033
Identities = 28/226 (12%), Positives = 58/226 (25%), Gaps = 64/226 (28%)
Query: 56 SSIHFHMKVGVQAIFTSENVVLSGLHSCVHCY-GDLSSATETEL----LDHCMQCSRDTC 110
++ F +Q F L + D T EL L + +
Sbjct: 24 TASFFIASQ-LQEQFNKI------LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 111 IPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQF 170
+ + Q +F + +L H A+ L + + +
Sbjct: 77 VGQFDQVLNLCL-TEFENCYLEGNDIHA-----------LAAKLLQENDTTLVKTK---- 120
Query: 171 VEDVRH----CVHCNKEMHNLDESFLLKHCK------------------YCPSLRTVGFQ 208
E +++ + + S L + Y LR + +Q
Sbjct: 121 -ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL-YQ 178
Query: 209 CYLCL---YITRQSAHMRQHLRKHTGRRP-FP--CDMCEYSAAQKW 248
Y L I + + + +R F ++ +W
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI------LEW 218
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.8 bits (79), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y+C C Y S K ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 34.8 bits (79), Expect = 0.002
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y+C C Y S K ++ H+RKHTGEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.8 bits (66), Expect = 0.11
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
+P+ C C Y++A K NL +H+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHL 29
Score = 28.6 bits (63), Expect = 0.23
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
++C +C Y++ ++N H+R HTG K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.3 bits (62), Expect = 0.33
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIER 164
+ KPY C +C YAS + +L H+ +
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRK 31
Score = 28.3 bits (62), Expect = 0.42
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRR 233
++C C Y + A++ HLRKHTG +
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.9 bits (56), Expect = 2.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 38 TGEKPYECNLCDYKATQNSSIHFHMK 63
+ KPY+C C Y + ++++ H++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
Score = 25.9 bits (56), Expect = 2.5
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 319 TGEKPYECNLCDYKATQNSSIHFHMK 344
+ KPY+C C Y + ++++ H++
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLR 30
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 35.0 bits (81), Expect = 0.002
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 133 HIRTHTGHKPYACTE--CGYASILSTDLRKHIERIH 166
+ TG KP+ACT CG+ S +L +H R H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRH-RRSH 37
Score = 32.7 bits (75), Expect = 0.011
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 33 HVRKHTGEKPYECN--LCDYKATQNSSIHFHMKV 64
TGEKP+ C C ++ +++ + H +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 32.7 bits (75), Expect = 0.012
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 314 HVRKHTGEKPYECN--LCDYKATQNSSIHFHMK 344
TGEKP+ C C ++ +++ + H +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR 35
Score = 31.9 bits (73), Expect = 0.025
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 132 RHIRTHTGHKPYACT 146
RH R+H+G KP +
Sbjct: 32 RHRRSHSGVKPSGPS 46
Score = 31.1 bits (71), Expect = 0.037
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 18 FVCPYLSRHK-----GDVKKHVRKHTGEKPYECN 46
F C + ++ +H R H+G KP +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 31.1 bits (71), Expect = 0.037
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 5/34 (14%)
Query: 299 FVCPYLSRHK-----GDVKKHVRKHTGEKPYECN 327
F C + ++ +H R H+G KP +
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 30.7 bits (70), Expect = 0.065
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 225 HLRKHTGRRPFPCD--MCEYSAAQKWNLKMHM 254
TG +PF C C + ++ L H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 29.6 bits (67), Expect = 0.17
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 218 QSAHMRQHLRKHTGRRPFPCD 238
+S + +H R H+G +P
Sbjct: 26 RSDELSRHRRSHSGVKPSGPS 46
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 0.003
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 128 SNFLRHIRTHTGHKPYACTECGYASILSTDLRKH 161
+ + + H G + C++CG I + L +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
Score = 33.1 bits (75), Expect = 0.014
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 28 GDVKKHVRKHTGEKPYECNLCDYKATQNSS 57
G K + H G++ +C+ C + S+
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST 33
Score = 33.1 bits (75), Expect = 0.014
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 309 GDVKKHVRKHTGEKPYECNLCDYKATQNSS 338
G K + H G++ +C+ C + S+
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRST 33
Score = 31.2 bits (70), Expect = 0.074
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 219 SAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNRFGSRD 268
S + + H G R C C ++ L +C C + ++
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQE 52
Score = 31.2 bits (70), Expect = 0.080
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
T + K C +C S L K E
Sbjct: 29 IRRSTLSRRKTPMCEKCRKDSCQEAALNKD-EGNES 63
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.004
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 100 DHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRT-HTGHK---PYACTECGYASILS 155
H ++ + G ++C C + + F H+ + H Y C EC + +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 156 TDLRKHIERIH 166
L +H + H
Sbjct: 64 DALSEHNLKYH 74
Score = 34.4 bits (78), Expect = 0.011
Identities = 9/57 (15%), Positives = 17/57 (29%)
Query: 126 FRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNK 182
+ + + Y C C + + H++ H + CV CN
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNF 58
Score = 32.1 bits (72), Expect = 0.077
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 30 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTSENVVLSGLHSCVHCYGD 89
+ + E YEC C ++ + FH+ NVVL+ + CV C +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSE------HPNVVLNSSYVCVEC--N 57
Query: 90 LSSATETELLDHCMQC 105
+ L +H ++
Sbjct: 58 FLTKRYDALSEHNLKY 73
Score = 31.3 bits (70), Expect = 0.12
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 311 VKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+ + E YEC C ++ + FH+ +H
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 30.9 bits (69), Expect = 0.20
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 206 GFQCYLCLYITRQSAHMRQHLR-KHTGRR---PFPCDMCEYSAAQKWNLKMH 253
G++C C + T H+ +H + C C + + L H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Score = 30.5 bits (68), Expect = 0.24
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 12/70 (17%)
Query: 221 HMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMH-----------FLCHHCNRFGSRDI 269
H + + + C C + H+ ++C CN F ++
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECN-FLTKRY 63
Query: 270 GDLIEHSTQC 279
L EH+ +
Sbjct: 64 DALSEHNLKY 73
Score = 28.6 bits (63), Expect = 1.2
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 251 KMHMHFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFVCPYLSRHKGD 310
K+ + C +C F + D+ H + Y C C +L++
Sbjct: 14 KVEGGYECKYCT-FQTPDLNMFTFHVDSEH-------PNVVLNSSYVCVECNFLTKRYDA 65
Query: 311 VKKHVRK-HTGEKPYECNL 328
+ +H K H GE+ ++ +
Sbjct: 66 LSEHNLKYHPGEENFKLTM 84
Score = 27.8 bits (61), Expect = 2.3
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 296 YRCFVCPYLSRHKGDVKKHVR-KHTG---EKPYECNLCDYKATQNSSIHFHMKLKH 347
Y C C + + HV +H Y C C++ + ++ H H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 26.3 bits (57), Expect = 6.6
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 15 YRCFVCPYLSRHKGDVKKHVR-KHTG---EKPYECNLCDYKATQNSSIHFH 61
Y C C + + HV +H Y C C++ + ++ H
Sbjct: 19 YECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 33.4 bits (76), Expect = 0.007
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 48
C +C + R + +H H+GEKPY
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.4 bits (76), Expect = 0.007
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLC 329
C +C + R + +H H+GEKPY
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.6 bits (74), Expect = 0.013
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTEC 148
C C + + RH +H+G KPY+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 32.2 bits (73), Expect = 0.020
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMC 240
C +C I R H+ +H H+G +P+
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 26.1 bits (57), Expect = 3.2
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R+ C++C ++L H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK 32
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 33.3 bits (76), Expect = 0.007
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
+ G P+ C++C L +H ER H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTH 35
Score = 32.9 bits (75), Expect = 0.009
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
GE P++C+ CD TQ + + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 32.5 bits (74), Expect = 0.013
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
GE P++C+ CD TQ + + H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
Score = 26.7 bits (59), Expect = 1.4
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
G PF C C+ Q+ L H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 26.0 bits (57), Expect = 2.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRP 234
F+C C + Q ++ QH R H +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 25.6 bits (56), Expect = 4.4
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHKP 142
F+C +C R+ ++H RTH
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.9 bits (78), Expect = 0.008
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 127 RSNFLRHIRTHTGHKPYACT--ECGYASILSTDLRKHIERIH 166
S+ H RTHTG KP++C+ C S +L +H R H
Sbjct: 32 SSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR-RTH 72
Score = 33.5 bits (77), Expect = 0.012
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 16 RCFVCPYLSRHK-----GDVKKHVRKHTGEKPYECN 46
R +C + K +K H R HTGEKP+ C+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 33.5 bits (77), Expect = 0.012
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 297 RCFVCPYLSRHK-----GDVKKHVRKHTGEKPYECN 327
R +C + K +K H R HTGEKP+ C+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 32.4 bits (74), Expect = 0.027
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 218 QSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH 255
+S+H++ H R HTG +PF C CE A+ L H
Sbjct: 31 KSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Score = 26.6 bits (59), Expect = 3.0
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 219 SAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMH 255
S+ + R C C + + +LK H
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR 40
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.7 bits (63), Expect = 0.24
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHMH 255
+PF C +CEY+ K NLK HM+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMN 30
Score = 28.3 bits (62), Expect = 0.41
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
++C +C Y +R K ++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.3 bits (62), Expect = 0.41
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
++C +C Y +R K ++K H+ +H+ EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 26.8 bits (58), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKHN 348
KP++C+LC+Y S++ HM +H+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM-NRHS 33
Score = 26.8 bits (58), Expect = 1.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 41 KPYECNLCDYKATQNSSIHFHM 62
KP++C+LC+Y S++ HM
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHM 29
Score = 25.6 bits (55), Expect = 3.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRR 233
F+C LC Y TR ++++ H+ +H+ +
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.5 bits (52), Expect = 7.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 141 KPYACTECGYASILSTDLRKHIER 164
KP+ C+ C YA+ ++L+ H+ R
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNR 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 28.7 bits (63), Expect = 0.25
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKHN 348
K Y+C C++++ +S++ H+K KH+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 25.2 bits (54), Expect = 4.5
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 41 KPYECNLCDYKATQNSSIHFHMK 63
K Y+C C++++ +S++ H+K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.6 bits (63), Expect = 0.30
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKV 64
+G++P+ C +C T ++ H+KV
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 27.4 bits (60), Expect = 0.68
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMKL 345
+G++P+ C +C T ++ H+K+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 25.9 bits (56), Expect = 2.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 229 HTGRRPFPCDMCEYSAAQKWNLKMHM 254
+G+RPF C +C + K N H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 24.3 bits (52), Expect = 8.8
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 137 HTGHKPYACTECGYASILSTDLRKHIERIH 166
+G +P+ C C A + +H+ ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL-KVH 30
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 30.3 bits (67), Expect = 0.37
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 287 LNDRRNVIMYRCFVCPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLK 346
L + + + C +C +K+H+R E C +C + T S H+ K
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 347 HN 348
HN
Sbjct: 124 HN 125
Score = 29.5 bits (65), Expect = 0.67
Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 103 MQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHI 162
+ + F C C + +HIR C C + H+
Sbjct: 63 LYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
Query: 163 ERIH 166
+ H
Sbjct: 121 CKKH 124
Score = 28.4 bits (62), Expect = 1.8
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 101 HCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRK 160
H + + I + S++L + + C C S L++
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQ 92
Query: 161 HIERIHMPQFVEDVRHCVHCNKEMHNLD 188
HI + C C KE + D
Sbjct: 93 HIRYTEHT------KVCPVCKKEFTSTD 114
Score = 28.0 bits (61), Expect = 2.2
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
F C LCL S ++QH+R C +C+ + H+
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 27.6 bits (60), Expect = 0.79
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+GEKPY C +C + + + +H++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.2 bits (59), Expect = 0.98
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKVGVQAIFTS 72
+GEKPY C +C + + + +H++ ++ S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 18 FVCPYLSRHK-----GDVKKHVRKHTGEK 41
F+C + K ++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.6 bits (57), Expect = 2.3
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 299 FVCPYLSRHK-----GDVKKHVRKHTGEK 322
F+C + K ++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 24.1 bits (53), Expect = 8.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 132 RHIRTHTGHK 141
RH RTHTG K
Sbjct: 22 RHKRTHTGEK 31
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 27.2 bits (59), Expect = 3.4
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 166 HMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITRQSAHMRQH 225
P ++V C CN ++ +L E H + C + C C ++H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLE--QGSHERLCRNA----AVCPYCSLRFFSPELKQEH 61
Query: 226 LRKHTGRRPFPCDMCEYSAAQKWNLKMH 253
K ++ C C + +++ H
Sbjct: 62 ESKCEYKK-LTCLECMRTFKSSFSIWRH 88
Score = 26.8 bits (58), Expect = 5.6
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 80 LHSCVHCYGDLSSATETELLDHCMQCSRDTCIPGWFQCFRCRYSNKFRSNFLRHIRTHTG 139
++ C C LSS E H C C C + +
Sbjct: 16 VYQCRLCNAKLSS--LLEQGSHERLCRNAA------VCPYCSLRFFSPE-LKQEHESKCE 66
Query: 140 HKPYACTECGYASILSTDLRKHIERIH 166
+K C EC S + +H +H
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVH 93
>3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation,
glutamine switch, hydrolase-hydrolase inhibitor CO; HET:
PDB; 2.30A {Homo sapiens} PDB: 3qi4_A*
Length = 533
Score = 28.5 bits (63), Expect = 4.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 152 SILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLR 203
IL+TD+ +H E M F E + + + N+E L + L+K C +R
Sbjct: 359 LILATDMARHAE--IMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISNEVR 408
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A;
phophodiestrase, enzyme mechanism, hydrolase, manganes
binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo
sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A*
3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
3n3z_A*
Length = 329
Score = 28.2 bits (63), Expect = 4.6
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 152 SILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLR 203
IL+TD+ +H E M F E + + + N+E L + L+K C +R
Sbjct: 182 LILATDMARHAE--IMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISNEVR 231
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.8 bits (58), Expect = 4.7
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 243 SAAQKWNLKMHM--HFLCHHCNRFGSRDIGDLIEHSTQCSVMGIAYLNDRRNVIMYRCFV 300
++W +H +C CN + + L +H C ++ +C
Sbjct: 10 GPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVC----------QKLQDALKCQH 59
Query: 301 CPYLSRHKGDVKKHVRKHTGEKP 323
C + K + H KP
Sbjct: 60 CRKQFKSKAGLNYHTMAEHSAKP 82
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 26.8 bits (58), Expect = 4.9
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 296 YRCFVCPYLSRHK-GDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKLKHN 348
C C + R +KKH+ ++ + C+ C + + + +H+ HN
Sbjct: 35 VSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHN 87
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.9 bits (61), Expect = 5.5
Identities = 5/39 (12%), Positives = 11/39 (28%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCNR 263
H G + + E +L+ +H +
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 5.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
F C C KF+ + H+R HT K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 24.3 bits (52), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y C C G +++HVR HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 24.3 bits (52), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y C C G +++HVR HTGEK
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.2 bits (53), Expect = 9.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 218 QSAHMRQHLRKHTGRR 233
+++H+R HLR HTG R
Sbjct: 22 KTSHLRAHLRWHTGER 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.139 0.476
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,382,213
Number of extensions: 307495
Number of successful extensions: 2722
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2591
Number of HSP's successfully gapped: 1295
Length of query: 353
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 258
Effective length of database: 4,049,298
Effective search space: 1044718884
Effective search space used: 1044718884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.6 bits)