RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1798
(353 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 43.8 bits (104), Expect = 4e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
RTH+G KPY C C S ++ HI + H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 40.0 bits (94), Expect = 9e-06
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHMKLKH 347
R H+GEKPYEC +C + TQ+ ++ H+ KH
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 37.7 bits (88), Expect = 5e-05
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHMK 63
R H+GEKPYEC +C + TQ+ ++ H+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHIL 29
Score = 35.7 bits (83), Expect = 2e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R H+G +P+ C +C Q +KMH+
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHI 28
Score = 23.0 bits (50), Expect = 8.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y C++C G +K H+ + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 23.0 bits (50), Expect = 8.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y C++C G +K H+ + E
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 39.7 bits (93), Expect = 1e-05
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 316 RKHTGEKPYECNLCDYKATQNSSIHFHMKLKHNMPF 351
R HTGEKPY C+ CD Q + H K H+ F
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36
Score = 37.7 bits (88), Expect = 6e-05
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 135 RTHTGHKPYACTECGYASILSTDLRKHIERIH 166
RTHTG KPYAC+ C L H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMH-FKRY 31
Score = 37.3 bits (87), Expect = 8e-05
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 35 RKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
R HTGEKPY C+ CD Q + H K
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR 30
Score = 34.3 bits (79), Expect = 0.001
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 227 RKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R HTG +P+ C C+ + QK L MH
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 25.0 bits (55), Expect = 1.5
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
Y C C R K + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 25.0 bits (55), Expect = 1.5
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
Y C C R K + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 24.2 bits (53), Expect = 3.1
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG 139
+ C C + + + H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 24.2 bits (53), Expect = 3.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTG 231
+ C C RQ + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHD 33
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 38.9 bits (91), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 133 HIRTHTGHKPYACTECGYASILSTDLRKHIERIHM 167
R TG KP+ C +C + S L H + HM
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALH-RKRHM 35
Score = 37.8 bits (88), Expect = 6e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 33 HVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
R TG KP++C CD +++ + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 37.0 bits (86), Expect = 8e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 314 HVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
R TG KP++C CD +++ + H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 35.1 bits (81), Expect = 5e-04
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 225 HLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
R TG +PF C C+ S ++ +L +H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 38.2 bits (89), Expect = 4e-05
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 132 RHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
R + Y C ECG + S+DL KH R H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKH-RRTH 35
Score = 37.4 bits (87), Expect = 7e-05
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 32 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
+ + + Y+C+ C + +S + H +
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 37.1 bits (86), Expect = 9e-05
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 313 KHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
+ + + Y+C+ C + +S + H +
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR 33
Score = 35.9 bits (83), Expect = 2e-04
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 224 QHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
+ + RR + CD C S + +L H
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
Score = 25.9 bits (57), Expect = 0.82
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE 40
Y+C C H D+ KH R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 25.9 bits (57), Expect = 0.82
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE 321
Y+C C H D+ KH R HTGE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
Score = 25.5 bits (56), Expect = 1.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG 139
++C C S S+ +H RTHTG
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 24.7 bits (54), Expect = 2.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTG 231
++C C S+ + +H R HTG
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTG 37
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 37.6 bits (88), Expect = 5e-05
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 137 HTGHKPYACTECGYASILSTDLRKHIERIH 166
H+G KPY C ECG A S+ L +H +R+H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQH-QRVH 30
Score = 37.6 bits (88), Expect = 5e-05
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKV 64
H+GEKPY C C +++S + H +V
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV 29
Score = 37.2 bits (87), Expect = 7e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMK 344
H+GEKPY C C +++S + H +
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQR 28
Score = 33.4 bits (77), Expect = 0.002
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 229 HTGRRPFPCDMCEYSAAQKWNLKMHM 254
H+G +P+ C C + ++ L H
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 28.0 bits (63), Expect = 0.13
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE 40
Y C C + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 28.0 bits (63), Expect = 0.13
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE 321
Y C C + +H R HTGE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
Score = 27.6 bits (62), Expect = 0.20
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG 139
+ C C + S ++H R HTG
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
Score = 26.8 bits (60), Expect = 0.41
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTG 231
+ C C +S+ + QH R HTG
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 36.5 bits (85), Expect = 1e-04
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECNL 47
Y C C + H+++ HT E+P++C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 36.5 bits (85), Expect = 1e-04
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRK-HTGEKPYECNL 328
Y C C + H+++ HT E+P++C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 35.4 bits (82), Expect = 4e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 138 TGHKPYACTECGYASILSTDLRKHIERIH 166
+ KPY C CG L HI+++H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 115 FQCFRCRYSNKFRSNFLRHIR-THTGHKPYAC 145
+ C C + HI+ HT +P+ C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 31.9 bits (73), Expect = 0.006
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 319 TGEKPYECNLCDYKATQNSSIHFHMKLKH 347
+ KPY C C ++ ++ H+K H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 31.5 bits (72), Expect = 0.009
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 207 FQCYLCLYITRQSAHMRQHLRK-HTGRRPFPCDM 239
+ C C + H+ H+++ HT RP C +
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 29.6 bits (67), Expect = 0.042
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 38 TGEKPYECNLCDYKATQNSSIHFHMK 63
+ KPY C C ++ ++ H+K
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIK 26
Score = 27.7 bits (62), Expect = 0.19
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 230 TGRRPFPCDMCEYSAAQKWNLKMHM 254
+ +P+ C C ++ +L H+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHI 25
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 34.0 bits (78), Expect = 0.001
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 137 HTGHKPYACTECGYASILSTDLRKHIERIH 166
+G +P+ C C A + +H ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARH-LKVH 30
Score = 32.0 bits (73), Expect = 0.005
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 37 HTGEKPYECNLCDYKATQNSSIHFHMKV 64
+G++P+ C +C T ++ H+KV
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
Score = 32.0 bits (73), Expect = 0.006
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 229 HTGRRPFPCDMCEYSAAQKWNLKMHM 254
+G+RPF C +C + K N H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 31.6 bits (72), Expect = 0.007
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 318 HTGEKPYECNLCDYKATQNSSIHFHMK 344
+G++P+ C +C T ++ H+K
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLK 28
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.4 bits (74), Expect = 0.005
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 117 CFRCRYSNKFRSNFLRHIRTHTGHKPYAC 145
C S F+ + H++ H+ + Y C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 31.6 bits (72), Expect = 0.007
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 17 CFVCPYLSRHKGDVKKHVRKHTGEKPYEC 45
C K +K+H++ H+ + Y C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 31.6 bits (72), Expect = 0.007
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 298 CFVCPYLSRHKGDVKKHVRKHTGEKPYEC 326
C K +K+H++ H+ + Y C
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 31.6 bits (72), Expect = 0.009
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 209 CYLCLYITRQSAHMRQHLRKHTGRRPFPCD 238
C H+++H++ H+ R + C+
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.7 bits (70), Expect = 0.015
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
KP+ C C S L H R H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTH-IRTH 26
Score = 29.1 bits (66), Expect = 0.044
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMKV 64
+KP++C +C +++ + H++
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT 25
Score = 28.7 bits (65), Expect = 0.061
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMK 344
+KP++C +C +++ + H++
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIR 24
Score = 26.8 bits (60), Expect = 0.34
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG 139
FQC C + + HIRTHTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 25.6 bits (57), Expect = 0.79
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTG 231
FQC +C+ +S H+ H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.5 bits (54), Expect = 2.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
+PF C +C + ++ +L H+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHI 23
Score = 24.1 bits (53), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTG 39
++C +C + H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.1 bits (53), Expect = 3.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTG 320
++C +C + H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.4 bits (69), Expect = 0.017
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
+ C CP + KH++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 30.4 bits (69), Expect = 0.017
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
+ C CP + KH++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 29.6 bits (67), Expect = 0.034
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
K +AC EC + S L KH + H
Sbjct: 1 KKFACPECPKRFMRSDHLSKH-IKTH 25
Score = 28.5 bits (64), Expect = 0.080
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
F C C + +HI+TH K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 27.7 bits (62), Expect = 0.19
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRR 233
F C C +S H+ +H++ H ++
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 27.3 bits (61), Expect = 0.21
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 41 KPYECNLCDYKATQNSSIHFHMKV 64
K + C C + ++ + H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
Score = 26.9 bits (60), Expect = 0.29
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 322 KPYECNLCDYKATQNSSIHFHMK 344
K + C C + ++ + H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
Score = 25.4 bits (56), Expect = 1.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
+ F C C + +L H+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 30.3 bits (69), Expect = 0.019
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
+ + C C A L++H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH-YRSH 25
Score = 29.5 bits (67), Expect = 0.040
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGEK 41
+ C VC + +K+H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.5 bits (67), Expect = 0.040
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGEK 322
+ C VC + +K+H R HT EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.4 bits (64), Expect = 0.10
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTGHK 141
F C C + + + RH R+HT K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.8 bits (60), Expect = 0.33
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 41 KPYECNLCDYKATQNSSIHFHMKV 64
+ + C +C + + H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 26.8 bits (60), Expect = 0.40
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTGRR 233
F C +C + H+++H R HT +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.42
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
R F C++C + A++ +LK H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 26.4 bits (59), Expect = 0.46
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 322 KPYECNLCDYKATQNSSIHFHMK 344
+ + C +C + + H +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 30.1 bits (67), Expect = 0.025
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKHN 348
K Y+C C++++ +S++ H+K KH+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 25.9 bits (56), Expect = 0.73
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 41 KPYECNLCDYKATQNSSIHFHMK 63
K Y+C C++++ +S++ H+K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
Score = 24.3 bits (52), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
K Y C C + S S++L+ HI+ H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKH 26
Score = 23.6 bits (50), Expect = 4.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
+ + C CE+ +A NLK H+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHI 22
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 30.0 bits (67), Expect = 0.025
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 207 FQCYLCLYITRQSAHMRQHLRKHTG 231
F+C +C Y +R S+ + HLR HTG
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTG 28
Score = 28.1 bits (62), Expect = 0.13
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 YRCFVCPYLSRHKGDVKKHVRKHTGE 40
++C +CPY SR+ + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 28.1 bits (62), Expect = 0.13
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 296 YRCFVCPYLSRHKGDVKKHVRKHTGE 321
++C +CPY SR+ + H+R HTG+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.0 bits (54), Expect = 1.6
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 40 EKPYECNLCDYKATQNSSIHFHMK 63
E+P++C +C Y + +S + H++
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
Score = 25.0 bits (54), Expect = 1.6
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 321 EKPYECNLCDYKATQNSSIHFHMK 344
E+P++C +C Y + +S + H++
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
Score = 24.2 bits (52), Expect = 2.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 115 FQCFRCRYSNKFRSNFLRHIRTHTG 139
F+C C Y+++ S H+R+HTG
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTG 28
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 30.3 bits (68), Expect = 0.033
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 24 SRHKGDVKKHVRKHTGEKPYECNLCD--YKATQNSSIHFHMKV 64
+ +G + K+V K +K +EC + +I H++
Sbjct: 1 TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 29.9 bits (67), Expect = 0.042
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 305 SRHKGDVKKHVRKHTGEKPYECNLCD--YKATQNSSIHFHMK 344
+ +G + K+V K +K +EC + +I H++
Sbjct: 1 TLPRGSIDKYV-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
Score = 27.2 bits (60), Expect = 0.45
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 127 RSNFLRHIRTHTGHKPYACTEC--GYASILSTDLRKHIERIH 166
R + ++++ K + C ++R H + H
Sbjct: 4 RGSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSH-IQTH 43
Score = 25.7 bits (56), Expect = 1.3
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 216 TRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCH 259
T + ++ K + F C + K + H H
Sbjct: 1 TLPRGSIDKY-VKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 23.7 bits (51), Expect = 7.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 112 PGWFQCFRCRYSNKFRSNFLRHIRTHTGHK 141
C + K R N HI+TH +
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 29.5 bits (67), Expect = 0.041
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
KPY C ECG A ++ L H +RIH
Sbjct: 1 KPYKCLECGKAFSQNSGLINH-QRIH 25
Score = 22.9 bits (50), Expect = 6.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 41 KPYECNLCDYKATQNSSIHFHMKV 64
KPY+C C +QNS + H ++
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI 24
>d2ayxa2 c.23.1.6 (A:700-816) Sensor kinase protein RcsC
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 31.7 bits (72), Expect = 0.046
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 210 YLCLYITRQSAHMRQHLRKHTGRRPFPCDM--CEYSAAQKWNLKMHMHFLCHHCNRFGSR 267
LC ++ + + G+ P P D+ + ++KW + + F H
Sbjct: 18 SLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRH------- 70
Query: 268 DIGDLIE 274
IG +E
Sbjct: 71 -IGIPLE 76
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 29.7 bits (66), Expect = 0.061
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 120 CRYSNKFRSNFLRHIRTHTGHKPYACTECGYASILSTDLRKHIERIH 166
C S +S RH+ H G +PY C CG + L H +IH
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH 53
Score = 29.7 bits (66), Expect = 0.066
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 212 CLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHM 254
C + +H+ H G RP+ C +C K +L HM
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 26.6 bits (58), Expect = 0.66
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 20 CPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMKV 64
C HK +H+ H G +PY C +C K + HMK+
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
Score = 26.2 bits (57), Expect = 0.93
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 301 CPYLSRHKGDVKKHVRKHTGEKPYECNLCDYKATQNSSIHFHMK 344
C HK +H+ H G +PY C +C K + HMK
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.8 bits (61), Expect = 0.17
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKHN 348
KPY+C CDY A +SS++ H+++ +
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHSD 28
Score = 27.0 bits (59), Expect = 0.27
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 41 KPYECNLCDYKATQNSSIHFHMKV 64
KPY+C CDY A +SS++ H+++
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRI 25
Score = 25.1 bits (54), Expect = 1.5
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 141 KPYACTECGYASILSTDLRKHIERIH 166
KPY C C YA+ S+ L KH+ RIH
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHL-RIH 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.7 bits (57), Expect = 0.82
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 141 KPYACT--ECGYASILSTDLRKHIERIH 166
+P+ CT CG S +L++H +R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH-KRTH 27
Score = 25.0 bits (55), Expect = 1.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 15 YRCFV--CPYLSRHKGDVKKHVRKHTGEK 41
+ C C ++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.0 bits (55), Expect = 1.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 296 YRCFV--CPYLSRHKGDVKKHVRKHTGEK 322
+ C C ++++H R HTGEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 25.0 bits (55), Expect = 1.8
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 120 CRYSNKFRSNFLRHIRTHTGHK 141
C RH RTHTG K
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
Score = 23.4 bits (51), Expect = 6.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 212 CLYITRQSAHMRQHLRKHTGRR 233
C +S +++H R HTG +
Sbjct: 10 CGKRFTRSDELQRHKRTHTGEK 31
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 25.9 bits (56), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 38 TGEKPYECNLCDYKATQNSSIHFH 61
TG KPYECN+C + S H H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRH 24
Score = 25.9 bits (56), Expect = 1.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 319 TGEKPYECNLCDYKATQNSSIHFH 342
TG KPYECN+C + S H H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRH 24
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 28.6 bits (63), Expect = 1.2
Identities = 9/146 (6%), Positives = 29/146 (19%)
Query: 143 YACTECGYASILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSL 202
GY + + +P+ + +L +
Sbjct: 161 AVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVH 220
Query: 203 RTVGFQCYLCLYITRQSAHMRQHLRKHTGRRPFPCDMCEYSAAQKWNLKMHMHFLCHHCN 262
+ R +A + G ++ ++ +
Sbjct: 221 VNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIR 280
Query: 263 RFGSRDIGDLIEHSTQCSVMGIAYLN 288
+ + G+ ++N
Sbjct: 281 AVLVQPAQGDSIPGIRRVETGMLWIN 306
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 27.7 bits (61), Expect = 2.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 153 ILSTDLRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLR 203
IL+TD+ +H E M F E + + + N+E L + L+K C +R
Sbjct: 179 ILATDMARHAE--IMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISNEVR 227
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 24.6 bits (54), Expect = 2.1
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 141 KPYACTE--CGYASILSTDLRKHIERIH 166
KP+ CT C + +L+ H R H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTH-LRSH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.6 bits (54), Expect = 2.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 141 KPYACTE--CGYASILSTDLRKHIERIH 166
+PYAC C S DL +H RIH
Sbjct: 1 RPYACPVESCDRRFSRSADLTRH-IRIH 27
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 24.6 bits (53), Expect = 2.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 233 RPFPCDMCEYSAAQKWNLKMHM 254
RPF C+ C + Q NL HM
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHM 22
Score = 23.8 bits (51), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 322 KPYECNLCDYKATQNSSIHFHMKLKH 347
+P++CN C + Q S++ HMK H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
Score = 23.0 bits (49), Expect = 9.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 41 KPYECNLCDYKATQNSSIHFHMK 63
+P++CN C + Q S++ HMK
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMK 23
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 292
Score = 27.1 bits (59), Expect = 3.0
Identities = 7/87 (8%), Positives = 18/87 (20%)
Query: 158 LRKHIERIHMPQFVEDVRHCVHCNKEMHNLDESFLLKHCKYCPSLRTVGFQCYLCLYITR 217
L + + + + + L L ++ L
Sbjct: 149 LNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLENFA 208
Query: 218 QSAHMRQHLRKHTGRRPFPCDMCEYSA 244
+++ RP M +
Sbjct: 209 NFKTSKKYQLADWRIRPLSKPMTAAAR 235
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 23.8 bits (52), Expect = 4.0
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 141 KPYACTE--CGYASILSTDLRKHIERIHMPQ 169
+PY+C C A + + DL +H ++ H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRH-KKSHQEK 31
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 26.9 bits (59), Expect = 4.7
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 106 SRDTCIP-----GWFQCFRCRYSNK--FRSNFLRHIRTHTGHKPYACTECGYASILSTDL 158
S DT IP W + +++ F+ F+ H+ T Y C + S +
Sbjct: 14 SIDTMIPLLSRALWNKHQVKKFNKAEDFQDRFIDHVETTLARSLYNCDDMVAYEAASMSI 73
Query: 159 RKHI 162
R ++
Sbjct: 74 RDNL 77
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.1 bits (50), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 141 KPYACTE--CGYASILSTDLRKHIERIH 166
KP+ CT CG L +LR H RIH
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH-VRIH 27
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 26.1 bits (57), Expect = 8.5
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 143 YACTECGYASILSTDLRKHIERIHMPQFV 171
+ GY+ + + + F
Sbjct: 403 HCRVNGGYSGLRDVYIARESYDDVQQSFF 431
>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
562]}
Length = 416
Score = 25.7 bits (56), Expect = 9.8
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 62 MKVGVQAIFTSENVVLSGLHSCVHCYGDLSSATETELLDHC 102
K G++A++ S V + + Y D S +
Sbjct: 80 AKAGIEAVYLSGWQVAADANLAASMYPDQSLYPANSVPAVV 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.139 0.476
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,398,879
Number of extensions: 67324
Number of successful extensions: 628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 264
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.6 bits)