BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17980
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%)
Query: 147 GGRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADV 206
GGR LI+LGD VD+ P F ++L T+ P H+ P+ C ++ +NFTVT S L+ Q + +
Sbjct: 2257 GGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEA 2316
Query: 207 VRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
++ ERPD ++R+ ++ + + L+ +E ++L L + G IL
Sbjct: 2317 LKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNIL 2361
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 14 DSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKG 56
DS++M+ +E+ +R G P+L++DV E +DP L P+L K+ KG
Sbjct: 2216 DSSFMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKG 2257
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%)
Query: 147 GGRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTSSGLEEQLMADV 206
GGR LI+LGD VD+ P F ++L T+ P H+ P+ C ++ +NFTVT S L+ Q + +
Sbjct: 2379 GGRILIRLGDQDVDFSPSFMIFLFTRDPTAHFTPDLCSRVTFVNFTVTPSSLQSQCLHEA 2438
Query: 207 VRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
++ ERPD ++R+ ++ + + L+ +E ++L L + G IL
Sbjct: 2439 LKTERPDTHKKRSDLLKIQGEFQVKLRILEKSLLNALSQASGNIL 2483
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 14 DSTYMRTMEACVRLGLPVLLEDVGETLDPALGPILLKQTYTKG 56
DS++M+ +E+ +R G P+L++DV E +DP L P+L K+ KG
Sbjct: 2338 DSSFMKNLESALRFGCPLLVQDV-ENIDPVLNPVLNKEIRKKG 2379
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 143 YPPSGGRTLIKLGDTVVDYDPKFRLYLTTKLPN---PHYLPETCIQIGLINFTVTSSGLE 199
+ +G R +++GD VD F+L++ + P+ P +L ++ L++F +E
Sbjct: 2073 FNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRS---RVRLVHFVTNKESIE 2129
Query: 200 EQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
++ + E +++++R +I + K LK +E +L L S+G +L
Sbjct: 2130 TRIFDITLTEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNML 2181
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 143 YPPSGGRTLIKLGDTVVDYDPKFRLYLTTKLPN---PHYLPETCIQIGLINFTVTSSGLE 199
+ +G R +++GD VD F+L++ + P+ P +L ++ L++F +E
Sbjct: 1864 FNHAGNRVTVEIGDHEVDVSGDFKLFIHSCDPSGDIPIFLRS---RVRLVHFVTNKESIE 1920
Query: 200 EQLMADVVRLERPDLEQERNQVIVTMNKDKSMLKEIEDNILRLLFTSEGEIL 251
++ + E +++++R +I + + LK +E +L L S+G +L
Sbjct: 1921 TRIFDITLTEENAEMQRKREDLIKLNTEYRLKLKNLEKRLLEELNNSQGNML 1972
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 70 HGMVFTNRACKMTKGFLSVCFLSEIKIWTRNSHHGSLFYDETR 112
HG F M G ++ +L ++W R + G F ++ R
Sbjct: 280 HGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLR 322
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound
To The Yeast 80s Ribosome
pdb|2WWA|A Chain A, Cryo-Em Structure Of Idle Yeast Ssh1 Complex Bound To The
Yeast 80s Ribosome
Length = 490
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 182 TCIQIGLINFTVTSSGLEEQLMADVV 207
+ +QIGLINF + +G+ L+A+V+
Sbjct: 146 SVVQIGLINFQLVGAGIFTTLLAEVI 171
>pdb|2YYE|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2YYE|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus Complexed With Ampcpp
pdb|2ZOD|A Chain A, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
pdb|2ZOD|B Chain B, Crystal Structure Of Selenophosphate Synthetase From
Aquifex Aeolicus
Length = 345
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 149 RTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIG 187
+T++ G T+ D +PKF L + P Y+ ++ Q+G
Sbjct: 134 KTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVG 172
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 153 KLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIGLINFTVTS--SGLEEQL-MADVVRL 209
KLG T+ D + L LT K+ N +IGLI F +++ + ++ Q+ ++D V++
Sbjct: 192 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 251
Query: 210 ERPDLEQER 218
+R L +ER
Sbjct: 252 DRV-LREER 259
>pdb|2ZAU|A Chain A, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|B Chain B, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
pdb|2ZAU|C Chain C, Crystal Structure Of An N-Terminally Truncated
Selenophosphate Synthetase From Aquifex Aeolicus
Length = 311
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 148 GRTLIKLGDTVVDYDPKFRLYLTTKLPNPHYLPETCIQIG 187
+T++ G T+ D +PKF L + P Y+ ++ Q+G
Sbjct: 99 AKTVLLGGHTIDDKEPKFGLSVAGICPEGKYITQSGAQVG 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,971,142
Number of Sequences: 62578
Number of extensions: 333044
Number of successful extensions: 691
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 18
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)